Instructions to use NeuroTechX/zuna with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use NeuroTechX/zuna with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("feature-extraction", model="NeuroTechX/zuna", trust_remote_code=True)# Load model directly from transformers import AutoModel model = AutoModel.from_pretrained("NeuroTechX/zuna", trust_remote_code=True, device_map="auto") - Notebooks
- Google Colab
- Kaggle
File size: 7,376 Bytes
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import math
import os
from collections.abc import Generator, Iterable
from datetime import timedelta
import torch
import torch.distributed._functional_collectives as funcol
import torch.distributed.distributed_c10d as c10d
from torch import distributed as dist
from torch.distributed.device_mesh import DeviceMesh
from torch.distributed.tensor import DTensor
import matplotlib.pyplot as plt
from datetime import datetime
import torch
@torch.no_grad()
def clip_grad_norm_(
parameters: torch.Tensor | Iterable[torch.Tensor],
max_norm: float,
norm_type: float = 2.0,
error_if_nonfinite: bool = False,
foreach: bool | None = None,
pp_mesh: DeviceMesh | None = None,
) -> torch.Tensor:
"""
Clip the gradient norm of an iterable of parameters.
Gradient norm clipping requires computing the gradient norm over the entire model.
`torch.nn.utils.clip_grad_norm_` only computes gradient norm along DP/FSDP/TP dimensions.
We need to manually reduce the gradient norm across PP stages.
See https://github.com/pytorch/torchtitan/issues/596 for details.
Args:
parameters: an iterable of Tensors or a single Tensor that will have gradients normalized
max_norm (float): max norm of the gradients
norm_type (float): type of the used p-norm. Can be ``'inf'`` for
infinity norm.
error_if_nonfinite (bool): if True, an error is thrown if the total
norm of the gradients from :attr:`parameters` is ``nan``,
``inf``, or ``-inf``. Default: False (will switch to True in the future)
foreach (bool): use the faster foreach-based implementation.
If ``None``, use the foreach implementation for CUDA and CPU native tensors and silently
fall back to the slow implementation for other device types.
Default: ``None``
pp_mesh: pipeline parallel device mesh. If not None, will reduce gradient norm across PP stages.
Returns:
Total norm of the parameter gradients (viewed as a single vector).
"""
grads = [p.grad for p in parameters if p.grad is not None]
total_norm = torch.nn.utils.get_total_norm(
grads, norm_type, error_if_nonfinite, foreach
)
# If total_norm is a DTensor, the placements must be `torch.distributed._tensor.ops.math_ops._NormPartial`.
# We can simply reduce the DTensor to get the total norm in this tensor's process group
# and then convert it to a local tensor.
# NOTE: It has two purposes:
# 1. to make sure the total norm is computed correctly when PP is used (see below)
# 2. to return a reduced total_norm tensor whose .item() would return the correct value
if isinstance(total_norm, DTensor):
# Will reach here if any non-PP parallelism is used.
# If only using PP, total_norm will be a local tensor.
# Remove FT replicate dimension if it exists.
total_norm = total_norm.full_tensor()
total_norm **= norm_type
dist.all_reduce(total_norm, op=dist.ReduceOp.SUM, group=pp_mesh.get_group())
total_norm **= 1.0 / norm_type
torch.nn.utils.clip_grads_with_norm_(parameters, max_norm, total_norm, foreach)
return total_norm
def reconstruct_full_mask(mask):
"""
Utilities for testing and visualizing attention masks in EEG transformer models.
Functions:
- reconstruct_full_mask: Converts sparse block attention mask to full dense mask
- visualize_attention_mask: Creates and saves attention pattern visualization
"""
# Get the block structure (260x260 with 1s for active blocks)
block_structure = mask.to_dense()[0, 0] # 260x260 sparse block pattern
full_shape = mask.shape[-1] # Get the full sequence length (33180)
full_mask = torch.zeros(full_shape, full_shape, device=block_structure.device, dtype=torch.bool)
# Reconstruct full mask from active blocks only
block_size = mask.BLOCK_SIZE[0] # 128
active_blocks = torch.where(block_structure == 1) # Get coordinates of active blocks
for q_block, kv_block in zip(active_blocks[0], active_blocks[1]):
# Fill in the 128x128 regions for active blocks
q_start, q_end = q_block * block_size, min((q_block + 1) * block_size, full_shape)
kv_start, kv_end = kv_block * block_size, min((kv_block + 1) * block_size, full_shape)
# Use mask_mod to get actual within-block attention pattern (vectorized)
q_indices = torch.arange(q_start, q_end, device=block_structure.device)
kv_indices = torch.arange(kv_start, kv_end, device=block_structure.device)
q_grid, kv_grid = torch.meshgrid(q_indices, kv_indices, indexing='ij')
# Call mask_mod with flattened arrays for efficiency
block_mask = mask.mask_mod(0, 0, q_grid.flatten(), kv_grid.flatten())
block_mask = block_mask.reshape(q_end - q_start, kv_end - kv_start)
full_mask[q_start:q_end, kv_start:kv_end] = block_mask
return full_mask
def visualize_attention_mask(mask, sample_size=5000, title_suffix=""):
"""
Plot the attention mask.
Attentino mask needs to be constructed using reconstruct_full_mask()
"""
if mask is not None:
# Reconstruct full mask from block structure
full_mask = reconstruct_full_mask(mask)
mask_2d = full_mask.cpu().numpy()
# Create binary attention pattern plot
plt.figure(figsize=(10, 10))
# Show sample or full mask depending on size
display_mask = mask_2d[:sample_size, :sample_size] if mask_2d.shape[0] > sample_size else mask_2d
plt.imshow(display_mask, cmap='Blues', aspect='equal')
plt.xlabel('Key Position')
plt.ylabel('Query Position')
plt.title(f'Attention Mask')
plt.colorbar(label='Attention Allowed')
# Generate filename with timestamp and config values
# timestamp = datetime.now().strftime("%Y%m%d_%H%M%S")
save_path = f"figures/attention_mask/mask_{title_suffix}.png"
# Create directory if it doesn't exist
os.makedirs(os.path.dirname(save_path), exist_ok=True)
plt.savefig(save_path, dpi=300, bbox_inches='tight')
plt.close()
print(f"Attention mask saved to {save_path}")
def plot_random_samples_in_grid(data,
num_samples=100,
grid_rows=10,
grid_cols=10,
save_path='figures/enc_out_samples_grid.png',
title='100 Random Samples from encoder output'):
"""
Plot 100 random samples from xxx in a 10x10 grid and save as PNG.
"""
random_indices = torch.randperm(data.shape[0])[:num_samples].cpu().numpy()
fig, axes = plt.subplots(grid_rows, grid_cols, figsize=(20, 20))
fig.suptitle(title, fontsize=16)
for idx, ax in enumerate(axes.flat):
sample_idx = random_indices[idx]
sample = data[sample_idx, :].float().detach().cpu().numpy()
ax.plot(sample)
ax.set_title(f'S{sample_idx}', fontsize=6)
ax.tick_params(labelsize=4)
ax.grid(True, alpha=0.3)
plt.tight_layout()
plt.savefig(save_path, dpi=150, bbox_inches='tight')
plt.close() |