Chainsaw / conf /model_v2 /config.json
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{
"experiment_name": "ss_c_base_no_excl",
"experiment_group": "ss_mod",
"lr": 0.0001,
"weight_decay": 0.001,
"val_freq": 1,
"epochs": 30,
"accumulation_steps": 16,
"data": {
"crop_size": null,
"crop_type": null,
"batch_size": 1,
"feature_dir": "/mnt/disk2/domdet/features/nopae/2d_features_ss_mod",
"label_dir": "/mnt/disk2/domdet/features/nopae/pairwise",
"chains_csv": null,
"evaluate_test": true,
"eval_casp_10_plus": false,
"splits_file": "splits_multi.json",
"validation_splits": [
"filt_val",
"filt_val_multi",
"filt_val_many"
],
"remove_missing_residues": false,
"using_alphafold_features": false,
"recycling": true,
"add_padding_mask": false,
"training_exclusion_json": null,
"multi_proportion": 0.65,
"train_ids": null,
"exclude_cath_test": false,
"start_end_ss": false
},
"learner": {
"uncertainty_model": false,
"save_every_epoch": true,
"model": {
"type": "trrosetta",
"kwargs": {
"filters": 32,
"kernel": 3,
"num_layers": 31,
"in_channels": 7,
"symmetrise_output": true
}
},
"assignment": {
"type": "sparse_lowrank",
"kwargs": {
"N_iters": 3,
"K_init": 4,
"linker_threshold": 30
}
},
"max_recycles": 1,
"save_val_best": true,
"x_has_padding_mask": false
},
"num_trainable_params": 577953
}