Download model/src/mrl_te_optimization/models/popen.py from OneScience-Group/UTRGAN: direct link, hf CLI and curl.
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https://huggingface.co/OneScience-Group/UTRGAN/resolve/main/model/src/mrl_te_optimization/models/popen.py
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hf download hf://OneScience-Group/UTRGAN/model/src/mrl_te_optimization/models/popen.py
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curl -L -o popen.py https://huggingface.co/OneScience-Group/UTRGAN/resolve/main/model/src/mrl_te_optimization/models/popen.py
6.18 kB
| import os,sys | |
| sys.path.append(os.path.dirname(os.path.dirname(__file__))) | |
| import numpy as np | |
| import utils | |
| import json | |
| from models import Modules | |
| import configparser | |
| import logging | |
| class Auto_popen(object): | |
| def __init__(self,config_file): | |
| """ | |
| read the config_fiel | |
| """ | |
| # machine config path | |
| self.shuffle = True | |
| self.script_dir = utils.script_dir | |
| self.data_dir = utils.data_dir | |
| self.data_dir = '/mnt/sina/run/ml/gan/motif/MTtrans/test.csv' | |
| self.log_dir = utils.log_dir | |
| self.pth_dir = utils.pth_dir | |
| self.set_attr_as_none(['te_net_l2','loss_fn','modual_to_fix','other_input_columns','pretrain_pth','kfold_index']) | |
| self.split_like = False | |
| self.loss_schema = 'constant' | |
| # transform to dict and convert to specific data type | |
| self.config = configparser.ConfigParser() | |
| self.config.read(config_file) | |
| self.config_file = config_file | |
| self.config_dict = {item[0]: eval(item[1]) for item in self.config.items('DEFAULT')} | |
| print(self.config_dict) | |
| # assign some attr from config_dict | |
| self.set_attr_from_dict(self.config_dict.keys()) | |
| self.check_run_and_setting_name() # check run name | |
| self._dataset = "_" + self.dataset if self.dataset != '' else self.dataset | |
| # the saving direction | |
| self.path_category = self.config_file.split('/')[-4] | |
| self.vae_log_path = config_file.replace('.ini','.log') | |
| self.Resumable = False | |
| # covariates for other input | |
| self.n_covar = len(self.other_input_columns) if self.other_input_columns is not None else 0 | |
| # generate self.model_args | |
| self.get_model_config() | |
| def vae_pth_path(self): | |
| save_to = os.path.join(self.pth_dir,self.model_type+self._dataset,self.setting_name) | |
| if self.kfold_index is None: | |
| pth = os.path.join(save_to, self.run_name + '-model_best.pth') | |
| elif type(self.kfold_index) == int: | |
| k = self.kfold_index | |
| pth = os.path.join(save_to, self.run_name + f'-model_best_cv{k}.pth') | |
| return pth | |
| def vae_pth_path(self, path): | |
| self._vae_pth_path = path | |
| def set_attr_from_dict(self,attr_ls): | |
| for attr in attr_ls: | |
| self.__setattr__(attr,self.config_dict[attr]) | |
| def set_attr_as_none(self,attr_ls): | |
| for attr in attr_ls: | |
| self.__setattr__(attr,None) | |
| def check_run_and_setting_name(self): | |
| file_name = self.config_file.split("/")[-1] | |
| dir_name = self.config_file.split("/")[-2] | |
| self.setting_name = dir_name | |
| assert self.run_name == file_name.split(".")[0] | |
| def get_model_config(self): | |
| """ | |
| assert we type in the correct model type and group them into model_args | |
| """ | |
| if self.model_type in dir(Modules): | |
| self.Model_Class = eval("Modules.{}".format(self.model_type)) | |
| else: | |
| raise NameError("not such model type") | |
| # conv_args define the soft-sharing part | |
| conv_args = ["channel_ls","kernel_size","stride","padding_ls","diliation_ls","pad_to"] | |
| self.conv_args = tuple([self.__getattribute__(arg) for arg in conv_args]) | |
| # left args dfine the tower part in which the arguments are different among tasks | |
| left_args={# Backbone models | |
| 'RL_regressor':["tower_width","dropout_rate"], | |
| 'RL_clf':["n_class","tower_width","dropout_rate"], | |
| 'RL_gru':["tower_width","dropout_rate"], | |
| 'RL_FACS': ["tower_width","dropout_rate"], | |
| 'RL_hard_share':["tower_width","dropout_rate", "activation","cycle_set" ], | |
| 'RL_covar_reg':["tower_width","dropout_rate", "activation", "n_covar", "cycle_set" ], | |
| 'RL_covar_intercept':["tower_width","dropout_rate", "activation", "n_covar", "cycle_set" ], | |
| 'RL_mish_gru':["tower_width","dropout_rate"], | |
| # GP models | |
| 'GP_net': ['tower_width', 'dropout_rate', 'global_pooling', 'activation', 'cycle_set'], | |
| 'Frame_GP': ['tower_width', 'dropout_rate', 'activation', 'cycle_set'], | |
| 'RL_Atten': ['qk_dim', 'n_head', 'n_atten_layer', 'tower_width', 'dropout_rate', 'activation', 'cycle_set'], | |
| # Koo net | |
| 'Conf_CNN' : ['pool_size'], | |
| }[self.model_type] | |
| self.model_args = [self.conv_args] + [self.__getattribute__(arg) for arg in left_args] | |
| def check_experiment(self,logger): | |
| """ | |
| check any unfinished experiment ? | |
| """ | |
| log_save_dir = os.path.dirname(self.vae_log_path) | |
| pth_save_dir = os.path.join(self.pth_dir,self.model_type+self._dataset,self.setting_name) | |
| # make dirs | |
| if not os.path.exists(log_save_dir): | |
| os.makedirs(log_save_dir) | |
| if not os.path.exists(pth_save_dir): | |
| os.makedirs(pth_save_dir) | |
| # check resume | |
| if os.path.exists(self.vae_log_path) & os.path.exists(self.vae_pth_path): | |
| self.Resumable = True | |
| logger.info(' \t \t ==============<<< Experiment detected >>>============== \t \t \n') | |
| def update_ini_file(self,E,logger): | |
| """ | |
| E is the dict contain the things to update | |
| """ | |
| # update the ini file | |
| self.config_dict.update(E) | |
| strconfig = {K: repr(V) for K,V in self.config_dict.items()} | |
| self.config['DEFAULT'] = strconfig | |
| with open(self.config_file,'w') as f: | |
| self.config.write(f) | |
| logger.info(' ini file updated ') | |
| def chimera_weight_update(self): | |
| # TODO : progressively update the loss weight between tasks | |
| # TODO : 1. scale the loss into the same magnitude | |
| # TODO : 2. update the weight by their own learning progress | |
| return None |