protenix / examples /example.json
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[{
"sequences": [
{
"proteinChain": {
"sequence": "MGSSHHHHHHSSGLVPRGSHMSGKIQHKAVVPAPSRIPLTLSEIEDLRRKGFNQTEIAELYGVTRQAVSWHKKTYGGRLTTRQIVQQNWPWDTRKPHDKSKAFQRLRDHGEYMRVGSFRTMSEDKKKRLLSWWKMLRDNDLVLEFDPSIEPYEGMAGGGFRYVPRDISDDDLLIRVNEHTQLTAEGELLWSWPDDIEELLSEP",
"count": 1,
"msa": {
"precomputed_msa_dir": "./examples/7r6r/msa/1",
"pairing_db": "uniref100"
}
}
},
{
"dnaSequence": {
"sequence": "TTTCGGTGGCTGTCAAGCGGG",
"count": 1
}
},
{
"dnaSequence": {
"sequence": "CCCGCTTGACAGCCACCGAAA",
"count": 1
}
}
],
"name": "7r6r"
},
{
"sequences": [
{
"proteinChain": {
"sequence": "MASWSHPQFEKGGTHVAETSAPTRSEPDTRVLTLPGTASAPEFRLIDIDGLLNNRATTDVRDLGSGRLNAWGNSFPAAELPAPGSLITVAGIPFTWANAHARGDNIRCEGQVVDIPPGQYDWIYLLAASERRSEDTIWAHYDDGHADPLRVGISDFLDGTPAFGELSAFRTSRMHYPHHVQEGLPTTMWLTRVGMPRHGVARSLRLPRSVAMHVFALTLRTAAAVRLAEGATT",
"count": 2,
"msa": {
"precomputed_msa_dir": "./examples/7wux/msa/1",
"pairing_db": "uniref100"
}
}
},
{
"proteinChain": {
"sequence": "MGSSHHHHHHSQDPNSTTTAPPVELWTRDLGSCLHGTLATALIRDGHDPVTVLGAPWEFRRRPGAWSSEEYFFFAEPDSLAGRLALYHPFESTWHRSDGDGVDDLREALAAGVLPIAAVDNFHLPFRPAFHDVHAAHLLVVYRITETEVYVSDAQPPAFQGAIPLADFLASWGSLNPPDDADVFFSASPSGRRWLRTRMTGPVPEPDRHWVGRVIRENVARYRQEPPADTQTGLPGLRRYLDELCALTPGTNAASEALSELYVISWNIQAQSGLHAEFLRAHSVKWRIPELAEAAAGVDAVAHGWTGVRMTGAHSRVWQRHRPAELRGHATALVRRLEAALDLLELAADAVS",
"count": 2,
"msa": {
"precomputed_msa_dir": "./examples/7wux/msa/2",
"pairing_db": "uniref100"
}
}
},
{
"ligand": {
"ligand": "CCD_P4G",
"count": 1
}
},
{
"ligand": {
"ligand": "CCD_6OI",
"count": 2
}
},
{
"ligand": {
"ligand": "CCD_MG",
"count": 3
}
}
],
"name": "7wux"
},
{
"sequences": [
{
"proteinChain": {
"sequence": "MAEVIRSSAFWRSFPIFEEFDSETLCELSGIASYRKWSAGTVIFQRGDQGDYMIVVVSGRIKLSLFTPQGRELMLRQHEAGALFGEMALLDGQPRSADATAVTAAEGYVIGKKDFLALITQRPKTAEAVIRFLCAQLRDTTDRLETIALYDLNARVARFFLATLRQIHGSEMPQSANLRLTLSQTDIASILGASRPKVNRAILSLEESGAIKRADGIICCNVGRLLSIADPEEDLEHHHHHHHH",
"count": 2,
"msa": {
"precomputed_msa_dir": "./examples/7pzb/msa/1",
"pairing_db": "uniref100"
}
}
},
{
"dnaSequence": {
"sequence": "CTAGGTAACATTACTCGCG",
"count": 2
}
},
{
"dnaSequence": {
"sequence": "GCGAGTAATGTTAC",
"count": 2
}
},
{
"ligand": {
"ligand": "CCD_PCG",
"count": 2
}
}
],
"name": "7pzb"
}
]