|
|
|
|
|
|
| Write-Host "==================================" -ForegroundColor Cyan
|
| Write-Host "Cancer@Home v2 - Windows Setup" -ForegroundColor Cyan
|
| Write-Host "==================================" -ForegroundColor Cyan
|
| Write-Host ""
|
|
|
|
|
| Write-Host "Checking Python installation..." -ForegroundColor Yellow
|
| try {
|
| $pythonVersion = python --version 2>&1
|
| Write-Host "✓ Python found: $pythonVersion" -ForegroundColor Green
|
| } catch {
|
| Write-Host "✗ Python not found. Please install Python 3.8+ from https://www.python.org/" -ForegroundColor Red
|
| exit 1
|
| }
|
|
|
|
|
| Write-Host "Checking Docker installation..." -ForegroundColor Yellow
|
| try {
|
| $dockerVersion = docker --version 2>&1
|
| Write-Host "✓ Docker found: $dockerVersion" -ForegroundColor Green
|
| } catch {
|
| Write-Host "✗ Docker not found. Please install Docker Desktop from https://www.docker.com/products/docker-desktop" -ForegroundColor Red
|
| exit 1
|
| }
|
|
|
|
|
| Write-Host ""
|
| Write-Host "Creating Python virtual environment..." -ForegroundColor Yellow
|
| python -m venv venv
|
| Write-Host "✓ Virtual environment created" -ForegroundColor Green
|
|
|
|
|
| Write-Host ""
|
| Write-Host "Installing Python dependencies..." -ForegroundColor Yellow
|
| & ".\venv\Scripts\Activate.ps1"
|
| pip install --upgrade pip
|
| pip install -r requirements.txt
|
| Write-Host "✓ Dependencies installed" -ForegroundColor Green
|
|
|
|
|
| Write-Host ""
|
| Write-Host "Creating directory structure..." -ForegroundColor Yellow
|
| $dirs = @(
|
| "data\gdc",
|
| "data\boinc",
|
| "data\processed\fastq",
|
| "data\processed\blast",
|
| "data\processed\variants",
|
| "data\cache",
|
| "logs"
|
| )
|
|
|
| foreach ($dir in $dirs) {
|
| New-Item -ItemType Directory -Force -Path $dir | Out-Null
|
| }
|
| Write-Host "✓ Directories created" -ForegroundColor Green
|
|
|
|
|
| Write-Host ""
|
| Write-Host "Starting Neo4j database..." -ForegroundColor Yellow
|
| docker-compose up -d
|
| Start-Sleep -Seconds 10
|
| Write-Host "✓ Neo4j started" -ForegroundColor Green
|
|
|
| Write-Host ""
|
| Write-Host "==================================" -ForegroundColor Cyan
|
| Write-Host "Setup Complete!" -ForegroundColor Green
|
| Write-Host "==================================" -ForegroundColor Cyan
|
| Write-Host ""
|
| Write-Host "To start the application:" -ForegroundColor Yellow
|
| Write-Host " 1. Activate virtual environment: .\venv\Scripts\Activate.ps1" -ForegroundColor White
|
| Write-Host " 2. Run the application: python run.py" -ForegroundColor White
|
| Write-Host ""
|
| Write-Host "Access points:" -ForegroundColor Yellow
|
| Write-Host " - Application: http://localhost:5000" -ForegroundColor White
|
| Write-Host " - Neo4j Browser: http://localhost:7474 (neo4j/cancer123)" -ForegroundColor White
|
| Write-Host " - API Docs: http://localhost:5000/docs" -ForegroundColor White
|
| Write-Host ""
|
|
|
