Feature Extraction
Transformers
Safetensors
malecns
connectome
fruit-fly
drosophila
neuroscience
graph
custom_code
Instructions to use QuixiAI/MaleCNS with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use QuixiAI/MaleCNS with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("feature-extraction", model="QuixiAI/MaleCNS", trust_remote_code=True)# pip install -U transformers accelerate # Load model directly from transformers import AutoModel model = AutoModel.from_pretrained("QuixiAI/MaleCNS", trust_remote_code=True, device_map="auto") - Notebooks
- Google Colab
- Kaggle
Model card: BibTeX for Berg et al. 2026 and for this repository
Browse files
README.md
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tags: [connectome, fruit-fly, drosophila, malecns, neuroscience, graph, custom_code]
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---
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# QuixiAI/MaleCNS
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The **MaleCNS v1.0** connectome, the complete wiring diagram of an adult male *Drosophila melanogaster* central
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nervous system (brain, optic lobes, and ventral nerve cord), packaged as Hugging Face `safetensors` so it loads as
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@@ -173,6 +173,34 @@ license; attribute the original authors:
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> Sexual dimorphism in the complete *Drosophila* male central nervous system connectome. *Cell* 189, 5504–5526.e15.
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> https://doi.org/10.1016/j.cell.2026.08.015 (preprint: https://doi.org/10.1101/2025.10.09.680999)
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Official site: https://male-cns.janelia.org · neuPrint dataset `male-cns:v1.0`.
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This repository is the data backbone of [FlyGPT](https://github.com/QuixiAI/FlyGPT), which trains a language model
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tags: [connectome, fruit-fly, drosophila, malecns, neuroscience, graph, custom_code]
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---
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# QuixiAI/MaleCNS
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The **MaleCNS v1.0** connectome, the complete wiring diagram of an adult male *Drosophila melanogaster* central
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nervous system (brain, optic lobes, and ventral nerve cord), packaged as Hugging Face `safetensors` so it loads as
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> Sexual dimorphism in the complete *Drosophila* male central nervous system connectome. *Cell* 189, 5504–5526.e15.
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> https://doi.org/10.1016/j.cell.2026.08.015 (preprint: https://doi.org/10.1101/2025.10.09.680999)
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BibTeX:
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```bibtex
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@article{berg2026malecns,
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title = {Sexual dimorphism in the complete {Drosophila} male central nervous system connectome},
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author = {Berg, Stuart and Beckett, Isabella R. and Costa, Marta and Schlegel, Philipp and Januszewski, Michał and Marin, Elizabeth C. and Nern, Aljoscha and Preibisch, Stephan and Qiu, Wei and Takemura, Shin-ya and Fragniere, Alexandra M.C. and Champion, Andrew S. and Adjavon, Diane-Yayra and Cook, Michael and Gkantia, Marina and Hayworth, Kenneth J. and Huang, Gary B. and Katz, William T. and Kämpf, Florian and Lu, Zhiyuan and Ordish, Christopher and Paterson, Tyler and Stürner, Tomke and Trautman, Eric T. and Whittle, Catherine R. and Burnett, Laura E. and Hoeller, Judith and Li, Feng and Loesche, Frank and Morris, Billy J. and Pietzsch, Tobias and Pleijzier, Markus W. and Silva, Valeria and Yin, Yijie and Ali, Iris and Badalamente, Griffin and Bates, Alexander Shakeel and Beresford, Rory J. and Bogovic, John and Brooks, Paul and Cachero, Sebastian and Canino, Brandon S. and Chaisrisawatsuk, Bhumpanya and Clements, Jody and Crowe, Arthur and de Haan Vicente, Inês and Dempsey, Georgia and Donà, Erika and Dos Santos, Márcia and Dreher, Marisa and Dunne, Christopher R. and Eichler, Katharina and Finley-May, Samantha and Flynn, Miriam A. and Hameed, Imran and Hopkins, Gary Patrick and Hubbard, Philip M. and Kiassat, Ladann and Kovalyak, Julie and Lauchie, Shirley A. and Leonard, Meghan and Lohff, Alanna and Longden, Kit D. and Maldonado, Charli A. and Moitra, Ilina and Moon, Sung Soo and Mooney, Caroline and Munnelly, Eva J. and Okeoma, Nneoma and Olbris, Donald J. and Pai, Anika and Patel, Birava and Phillips, Emily M. and Plaza, Stephen M. and Richards, Alana and Rivas Salinas, Jennifer and Roberts, Ruairí J.V. and Rogers, Edward M. and Scott, Ashley L. and Scuderi, Louis A. and Seenivasan, Pavithraa and Serratosa Capdevila, Laia and Smith, Claire and Svirskas, Rob and Takemura, Satoko and Tastekin, Ibrahim and Thomson, Alexander and Umayam, Lowell and Walsh, John J. and Whittome, Holly and Xu, C. Shan and Yakal, Emily A. and Yang, Tansy and Zhao, Arthur and George, Reed and Jain, Viren and Jayaraman, Vivek and Korff, Wyatt and Meissner, Geoffrey W. and Romani, Sandro and Funke, Jan and Knecht, Christopher and Saalfeld, Stephan and Scheffer, Louis K. and Waddell, Scott and Card, Gwyneth M. and Ribeiro, Carlos and Reiser, Michael B. and Hess, Harald F. and Rubin, Gerald M. and Jefferis, Gregory S.X.E.},
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journal = {Cell},
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volume = {189},
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number = {18},
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pages = {5504-5526.e15},
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year = {2026},
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month = {9},
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publisher = {Elsevier},
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doi = {10.1016/j.cell.2026.08.015},
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url = {https://doi.org/10.1016/j.cell.2026.08.015},
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note = {Preprint: bioRxiv 10.1101/2025.10.09.680999. Data: MaleCNS v1.0, CC-BY 4.0, https://male-cns.janelia.org}
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}
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@misc{quixiai2026malecns,
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title = {MaleCNS: the MaleCNS v1.0 fruit-fly connectome as lossless safetensors},
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author = {Hartford, Eric},
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year = {2026},
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publisher = {Hugging Face},
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howpublished = {\url{https://huggingface.co/QuixiAI/MaleCNS}},
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note = {Repackaging of Berg et al. (2026), CC-BY 4.0}
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}
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```
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Official site: https://male-cns.janelia.org · neuPrint dataset `male-cns:v1.0`.
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This repository is the data backbone of [FlyGPT](https://github.com/QuixiAI/FlyGPT), which trains a language model
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