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cd0c7a9 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 | FROM python:3.11-slim
RUN apt-get update && apt-get install -y --no-install-recommends \
build-essential gcc wget ca-certificates openbabel libgomp1 && \
rm -rf /var/lib/apt/lists/*
# AutoDock Vina
RUN wget -q "https://github.com/ccsb-scripps/AutoDock-Vina/releases/download/v1.2.7/vina_1.2.7_linux_x86_64" -O /usr/local/bin/vina && \
chmod +x /usr/local/bin/vina
# minimap2 (for sequencing)
RUN wget -q https://github.com/lh3/minimap2/releases/download/v2.28/minimap2-2.28_x64-linux.tar.bz2 -O /tmp/minimap2.tar.bz2 && \
tar xjf /tmp/minimap2.tar.bz2 -C /tmp && \
cp /tmp/minimap2-2.28_x64-linux/minimap2 /usr/local/bin/minimap2 && \
chmod +x /usr/local/bin/minimap2 && \
rm -rf /tmp/minimap2*
WORKDIR /app
COPY requirements.txt .
RUN pip install --no-cache-dir -r requirements.txt
COPY . .
CMD ["python", "-m", "app.worker"]
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