File size: 1,237 Bytes
63929b9 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 | user_config: null
dataset:
path: null
initsurf_root: null
split_file: /path/to/datasets/splits/dataset_split.csv
split_name: test
session_label: "01"
space: "MNI152"
# Multi-dataset mode.
roots:
HCP_YA: /path/to/datasets/hcpya-u100/derivatives/sc-preproc
OASIS1: /path/to/datasets/oasis-1/derivatives/sc-preproc
initsurf_roots:
HCP_YA: /path/to/datasets/hcpya-u100/derivatives/sc-initsurf
OASIS1: /path/to/datasets/oasis-1/derivatives/sc-initsurf
surface_name: ["lh_pial", "lh_white", "rh_pial", "rh_white"]
prob_clip_min: 0.0
prob_clip_max: 1.0
prob_gamma: 1.0
add_prob_grad: false
inference:
device: "cuda:0"
batch_size: 1
num_workers: 2
log_level: "INFO"
overwrite: true
model:
ckpt_path: /path/to/deform_best_rmse.pth
strict_load: true
c_in: 2
sigma: 1
n_steps: 8
inshape: [184, 224, 184]
c_hid: [8, 16, 32, 64, 128, 128]
geom_ratio: 0.5
geom_depth: 6
gn_groups: 8
gate_init: -3.0
outputs:
out_root: null
# Multi-dataset mode outputs.
out_roots:
HCP_YA: /path/to/datasets/hcpya-u100/derivatives/sc-deform
OASIS1: /path/to/datasets/oasis-1/derivatives/sc-deform
log_dir: /path/to/simcortex-runs/deform/exp01_hcpya+oasis1/logs_infer
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