| dataset: | |
| # Single-dataset mode: | |
| # Set dataset.path and outputs.pred_root. | |
| # Multi-dataset mode: | |
| # Keep dataset.path: null and use dataset.roots + outputs.pred_roots. | |
| path: null | |
| name: null | |
| split_file: /path/to/datasets/splits/dataset_split.csv | |
| split_name: test | |
| session_label: "01" | |
| space: MNI152 | |
| roots: | |
| HCP_YA: /path/to/datasets/hcpya-u100/derivatives/sc-preproc | |
| OASIS1: /path/to/datasets/oasis-1/derivatives/sc-preproc | |
| evaluation: | |
| num_classes: 9 | |
| exclude_background: true | |
| eps: 1.0e-6 | |
| compute_nsd: true | |
| nsd_tolerance_vox: 1.0 | |
| nsd_include_background: false | |
| spacing: [1.0, 1.0, 1.0] | |
| outputs: | |
| # Single-dataset prediction root: | |
| pred_root: null | |
| # Multi-dataset prediction roots produced by seg/inference.py. | |
| pred_roots: | |
| HCP_YA: /path/to/datasets/hcpya-u100/derivatives/sc-seg | |
| OASIS1: /path/to/datasets/oasis-1/derivatives/sc-seg | |
| eval_dir: /path/to/simcortex-runs/seg/exp01_hcpya+oasis1/evals | |
| log_dir: ${outputs.eval_dir}/logs | |
| eval_csv: ${outputs.eval_dir}/seg_eval_test.csv | |
| eval_xlsx: ${outputs.eval_dir}/seg_eval_test.xlsx | |
| failed_csv: ${outputs.eval_dir}/seg_eval_test_failed.csv | |
| summary_csv: ${outputs.eval_dir}/seg_eval_test_summary_by_dataset.csv | |
| summary_json: ${outputs.eval_dir}/seg_eval_test_summary.json | |
| hydra: | |
| run: | |
| dir: ${outputs.log_dir} | |
| output_subdir: null | |
| job: | |
| chdir: false | |