lhallee commited on
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6a1b053
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1 Parent(s): 0fcdc05

Update FastPLMs runtime files

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Add-only FastPLMs files-only publication. Checkpoint weights and complete-artifact attestations are unchanged.

Files changed (3) hide show
  1. README.md +4 -5
  2. config.json +3 -3
  3. runtime-attestation.json +5 -5
README.md CHANGED
@@ -18,11 +18,11 @@ Supported Transformers entry points are `AutoConfig`, `AutoModel`.
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  ## Install and platform requirements
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- Install FastPLMs from the exact source revision paired with this model card:
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  ```bash
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  python -m pip install \
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- "fastplms[structure] @ git+https://github.com/Synthyra/FastPLMs.git@ed38b898187ba16b64d801874decdddfe2938a58"
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  ```
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  Python 3.11-3.14, PyTorch 2.13, and Transformers 5.13 are required. Structure inference requires the `structure` extra and a CUDA device for the published execution contract. The current validated release target is the exact NVIDIA GH200 on Linux aarch64; Linux x86-64, CPU-only, Windows, and macOS structure runs are not current release evidence. The Hub quick start below requires network
@@ -236,9 +236,8 @@ or establish biological validity.
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  ## Release record
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  - FastPLMs weights: `Synthyra/ESMFold2-Fast`
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- - Runtime revision: `ed38b898187ba16b64d801874decdddfe2938a58`
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- - Runtime source-tree SHA-256: `a004b0823a77112077314f3df75fbbf734aaf4e16563511facd7f74bc613f045`
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- - Runtime bundle SHA-256: `f0f08be30a8100f0a817d561efb367d45e9360b9a6cc5894d0f65b029dc7e4a6`
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  - Generator/schema version and complete/runtime-only attestations: recorded in `provenance.json`
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  - Official checkpoint: `biohub/ESMFold2-Fast`
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  - Artifact source: `fast`
 
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  ## Install and platform requirements
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+ Install the current FastPLMs package:
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  ```bash
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  python -m pip install \
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+ "fastplms[structure] @ git+https://github.com/Synthyra/FastPLMs.git"
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  ```
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  Python 3.11-3.14, PyTorch 2.13, and Transformers 5.13 are required. Structure inference requires the `structure` extra and a CUDA device for the published execution contract. The current validated release target is the exact NVIDIA GH200 on Linux aarch64; Linux x86-64, CPU-only, Windows, and macOS structure runs are not current release evidence. The Hub quick start below requires network
 
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  ## Release record
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  - FastPLMs weights: `Synthyra/ESMFold2-Fast`
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+ - Runtime revision: recorded separately in the built artifact and published commit
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+ - Source-tree and runtime-bundle SHA-256: recorded in `provenance.json`
 
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  - Generator/schema version and complete/runtime-only attestations: recorded in `provenance.json`
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  - Official checkpoint: `biohub/ESMFold2-Fast`
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  - Artifact source: `fast`
config.json CHANGED
@@ -29,10 +29,10 @@
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  "fastplms_checkpoint_repo_id": "Synthyra/ESMFold2-Fast",
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  "fastplms_checkpoint_revision": "407875bfcaa42552bfcb25acd67ee1888b790170",
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  "fastplms_model_id": "esmfold2_fast",
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- "fastplms_release_tool_revision": "ed38b898187ba16b64d801874decdddfe2938a58",
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- "fastplms_release_tool_sha256": "6b15c1ec4a44faba83aa128452b06c617de4c4f580ca1cc91f9fce9747ca784e",
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  "fastplms_runtime_bundle_sha256": "f0f08be30a8100f0a817d561efb367d45e9360b9a6cc5894d0f65b029dc7e4a6",
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- "fastplms_runtime_revision": "ed38b898187ba16b64d801874decdddfe2938a58",
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  "fastplms_source_tree_sha256": "a004b0823a77112077314f3df75fbbf734aaf4e16563511facd7f74bc613f045",
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  "fastplms_weights_revision": "407875bfcaa42552bfcb25acd67ee1888b790170",
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  "folding_trunk": {
 
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  "fastplms_checkpoint_repo_id": "Synthyra/ESMFold2-Fast",
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  "fastplms_checkpoint_revision": "407875bfcaa42552bfcb25acd67ee1888b790170",
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  "fastplms_model_id": "esmfold2_fast",
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+ "fastplms_release_tool_revision": "95691a87c781f052f65b6ab3ca99dfce4ebb59c7",
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+ "fastplms_release_tool_sha256": "19b4247aba04a74de5069397518374ab2c3b9e0ce18ba9f36de34f0f4c5d1ceb",
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  "fastplms_runtime_bundle_sha256": "f0f08be30a8100f0a817d561efb367d45e9360b9a6cc5894d0f65b029dc7e4a6",
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+ "fastplms_runtime_revision": "95691a87c781f052f65b6ab3ca99dfce4ebb59c7",
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  "fastplms_source_tree_sha256": "a004b0823a77112077314f3df75fbbf734aaf4e16563511facd7f74bc613f045",
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  "fastplms_weights_revision": "407875bfcaa42552bfcb25acd67ee1888b790170",
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  "folding_trunk": {
runtime-attestation.json CHANGED
@@ -6,9 +6,9 @@
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  "LICENSES/biohub-transformers/LICENSE": "sha256:77fd4710def9ec3c0f6225800e0235f15a425abd4a8b03559127fcd782612049",
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  "LICENSES/protein-ttt/LICENSE": "sha256:bb01e7d5554f9e2e117172e56551452f68a7818df7bc8e71cd7a776a1d4ba3df",
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  "LICENSES/protein-ttt/PROVENANCE.md": "sha256:dc641c37353c2efd50ccbdb316ca4aae495ec02c1563e0e15bac92f75fc482e5",
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- "README.md": "sha256:1cb91e163ef9511c682c64bbb83c15f558c3393ae6790e7025dda28e00d05abc",
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  "THIRD_PARTY_NOTICES.md": "sha256:25704b3c76404696cae52e7fca13088d329f70f412687340351259e86cd62baa",
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- "config.json": "sha256:e40c9dd51b9d7f423f23a01d283d9fb35e2c684a6aee8995d78c7ba8e5b0c9df",
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  "fastplms/__init__.py": "sha256:4fb3196022ca8ec699d59d09bdbc5f0184195552b773698ab9b061fe3cd7df12",
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  "fastplms/attention/__init__.py": "sha256:f60b9fecfb4bcb37a4e7c26dc2f752b9035f9cbad627b4a84213f3a92ec88f7d",
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  "fastplms/attention/_core.py": "sha256:8f7ec5b65bd8b6c6fa4951d50d1c0e499abf03ae00914794b51fc410201e3e33",
@@ -69,10 +69,10 @@
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  },
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  "model_id": "esmfold2_fast",
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  "redistributable": true,
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- "release_tool_revision": "ed38b898187ba16b64d801874decdddfe2938a58",
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- "release_tool_sha256": "6b15c1ec4a44faba83aa128452b06c617de4c4f580ca1cc91f9fce9747ca784e",
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  "runtime_bundle_sha256": "f0f08be30a8100f0a817d561efb367d45e9360b9a6cc5894d0f65b029dc7e4a6",
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- "runtime_revision": "ed38b898187ba16b64d801874decdddfe2938a58",
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  "schema_version": 2,
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  "scope": "runtime-only",
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  "source_tree_sha256": "a004b0823a77112077314f3df75fbbf734aaf4e16563511facd7f74bc613f045",
 
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  "LICENSES/biohub-transformers/LICENSE": "sha256:77fd4710def9ec3c0f6225800e0235f15a425abd4a8b03559127fcd782612049",
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  "LICENSES/protein-ttt/LICENSE": "sha256:bb01e7d5554f9e2e117172e56551452f68a7818df7bc8e71cd7a776a1d4ba3df",
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  "LICENSES/protein-ttt/PROVENANCE.md": "sha256:dc641c37353c2efd50ccbdb316ca4aae495ec02c1563e0e15bac92f75fc482e5",
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+ "README.md": "sha256:4d264f1e38fc6eb3a3a13945e638b83546d4d5be529156f6a02cce22aaa4f564",
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  "THIRD_PARTY_NOTICES.md": "sha256:25704b3c76404696cae52e7fca13088d329f70f412687340351259e86cd62baa",
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+ "config.json": "sha256:f8db78eae20948a1d1cede00f6f07f77e2a8c74d057151609e234834e4a00f58",
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  "fastplms/__init__.py": "sha256:4fb3196022ca8ec699d59d09bdbc5f0184195552b773698ab9b061fe3cd7df12",
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  "fastplms/attention/__init__.py": "sha256:f60b9fecfb4bcb37a4e7c26dc2f752b9035f9cbad627b4a84213f3a92ec88f7d",
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  "fastplms/attention/_core.py": "sha256:8f7ec5b65bd8b6c6fa4951d50d1c0e499abf03ae00914794b51fc410201e3e33",
 
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  },
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  "model_id": "esmfold2_fast",
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  "redistributable": true,
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+ "release_tool_revision": "95691a87c781f052f65b6ab3ca99dfce4ebb59c7",
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+ "release_tool_sha256": "19b4247aba04a74de5069397518374ab2c3b9e0ce18ba9f36de34f0f4c5d1ceb",
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  "runtime_bundle_sha256": "f0f08be30a8100f0a817d561efb367d45e9360b9a6cc5894d0f65b029dc7e4a6",
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+ "runtime_revision": "95691a87c781f052f65b6ab3ca99dfce4ebb59c7",
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  "schema_version": 2,
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  "scope": "runtime-only",
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  "source_tree_sha256": "a004b0823a77112077314f3df75fbbf734aaf4e16563511facd7f74bc613f045",