| { |
| "dataset_name": "Dataset001_LiverSegmentation", |
| "plans_name": "nnUNetPlans", |
| "original_median_spacing_after_transp": [ |
| 3.4999969005584717, |
| 0.9943181872367859, |
| 0.9943181872367859 |
| ], |
| "original_median_shape_after_transp": [ |
| 64, |
| 310, |
| 352 |
| ], |
| "image_reader_writer": "SimpleITKIO", |
| "transpose_forward": [ |
| 0, |
| 1, |
| 2 |
| ], |
| "transpose_backward": [ |
| 0, |
| 1, |
| 2 |
| ], |
| "configurations": { |
| "2d": { |
| "data_identifier": "nnUNetPlans_2d", |
| "preprocessor_name": "DefaultPreprocessor", |
| "batch_size": 22, |
| "patch_size": [ |
| 384, |
| 384 |
| ], |
| "median_image_size_in_voxels": [ |
| 324.0, |
| 379.0 |
| ], |
| "spacing": [ |
| 1.0, |
| 1.0 |
| ], |
| "normalization_schemes": [ |
| "ZScoreNormalization" |
| ], |
| "use_mask_for_norm": [ |
| false |
| ], |
| "resampling_fn_data": "resample_data_or_seg_to_shape", |
| "resampling_fn_seg": "resample_data_or_seg_to_shape", |
| "resampling_fn_data_kwargs": { |
| "is_seg": false, |
| "order": 3, |
| "order_z": 0, |
| "force_separate_z": null |
| }, |
| "resampling_fn_seg_kwargs": { |
| "is_seg": true, |
| "order": 1, |
| "order_z": 0, |
| "force_separate_z": null |
| }, |
| "resampling_fn_probabilities": "resample_data_or_seg_to_shape", |
| "resampling_fn_probabilities_kwargs": { |
| "is_seg": false, |
| "order": 1, |
| "order_z": 0, |
| "force_separate_z": null |
| }, |
| "architecture": { |
| "network_class_name": "dynamic_network_architectures.architectures.unet.PlainConvUNet", |
| "arch_kwargs": { |
| "n_stages": 7, |
| "features_per_stage": [ |
| 32, |
| 64, |
| 128, |
| 256, |
| 512, |
| 512, |
| 512 |
| ], |
| "conv_op": "torch.nn.modules.conv.Conv2d", |
| "kernel_sizes": [ |
| [ |
| 3, |
| 3 |
| ], |
| [ |
| 3, |
| 3 |
| ], |
| [ |
| 3, |
| 3 |
| ], |
| [ |
| 3, |
| 3 |
| ], |
| [ |
| 3, |
| 3 |
| ], |
| [ |
| 3, |
| 3 |
| ], |
| [ |
| 3, |
| 3 |
| ] |
| ], |
| "strides": [ |
| [ |
| 1, |
| 1 |
| ], |
| [ |
| 2, |
| 2 |
| ], |
| [ |
| 2, |
| 2 |
| ], |
| [ |
| 2, |
| 2 |
| ], |
| [ |
| 2, |
| 2 |
| ], |
| [ |
| 2, |
| 2 |
| ], |
| [ |
| 2, |
| 2 |
| ] |
| ], |
| "n_conv_per_stage": [ |
| 2, |
| 2, |
| 2, |
| 2, |
| 2, |
| 2, |
| 2 |
| ], |
| "n_conv_per_stage_decoder": [ |
| 2, |
| 2, |
| 2, |
| 2, |
| 2, |
| 2 |
| ], |
| "conv_bias": true, |
| "norm_op": "torch.nn.modules.instancenorm.InstanceNorm2d", |
| "norm_op_kwargs": { |
| "eps": 1e-05, |
| "affine": true |
| }, |
| "dropout_op": null, |
| "dropout_op_kwargs": null, |
| "nonlin": "torch.nn.LeakyReLU", |
| "nonlin_kwargs": { |
| "inplace": true |
| } |
| }, |
| "_kw_requires_import": [ |
| "conv_op", |
| "norm_op", |
| "dropout_op", |
| "nonlin" |
| ] |
| }, |
| "batch_dice": true |
| }, |
| "3d_lowres": { |
| "data_identifier": "nnUNetPlans_3d_lowres", |
| "preprocessor_name": "DefaultPreprocessor", |
| "batch_size": 2, |
| "patch_size": [ |
| 96, |
| 160, |
| 160 |
| ], |
| "median_image_size_in_voxels": [ |
| 154, |
| 227, |
| 266 |
| ], |
| "spacing": [ |
| 1.4257608868461793, |
| 1.4257608868461793, |
| 1.4257608868461793 |
| ], |
| "normalization_schemes": [ |
| "ZScoreNormalization" |
| ], |
| "use_mask_for_norm": [ |
| false |
| ], |
| "resampling_fn_data": "resample_data_or_seg_to_shape", |
| "resampling_fn_seg": "resample_data_or_seg_to_shape", |
| "resampling_fn_data_kwargs": { |
| "is_seg": false, |
| "order": 3, |
| "order_z": 0, |
| "force_separate_z": null |
| }, |
| "resampling_fn_seg_kwargs": { |
| "is_seg": true, |
| "order": 1, |
| "order_z": 0, |
| "force_separate_z": null |
| }, |
| "resampling_fn_probabilities": "resample_data_or_seg_to_shape", |
| "resampling_fn_probabilities_kwargs": { |
| "is_seg": false, |
| "order": 1, |
| "order_z": 0, |
| "force_separate_z": null |
| }, |
| "architecture": { |
| "network_class_name": "dynamic_network_architectures.architectures.unet.PlainConvUNet", |
| "arch_kwargs": { |
| "n_stages": 6, |
| "features_per_stage": [ |
| 32, |
| 64, |
| 128, |
| 256, |
| 320, |
| 320 |
| ], |
| "conv_op": "torch.nn.modules.conv.Conv3d", |
| "kernel_sizes": [ |
| [ |
| 3, |
| 3, |
| 3 |
| ], |
| [ |
| 3, |
| 3, |
| 3 |
| ], |
| [ |
| 3, |
| 3, |
| 3 |
| ], |
| [ |
| 3, |
| 3, |
| 3 |
| ], |
| [ |
| 3, |
| 3, |
| 3 |
| ], |
| [ |
| 3, |
| 3, |
| 3 |
| ] |
| ], |
| "strides": [ |
| [ |
| 1, |
| 1, |
| 1 |
| ], |
| [ |
| 2, |
| 2, |
| 2 |
| ], |
| [ |
| 2, |
| 2, |
| 2 |
| ], |
| [ |
| 2, |
| 2, |
| 2 |
| ], |
| [ |
| 2, |
| 2, |
| 2 |
| ], |
| [ |
| 1, |
| 2, |
| 2 |
| ] |
| ], |
| "n_conv_per_stage": [ |
| 2, |
| 2, |
| 2, |
| 2, |
| 2, |
| 2 |
| ], |
| "n_conv_per_stage_decoder": [ |
| 2, |
| 2, |
| 2, |
| 2, |
| 2 |
| ], |
| "conv_bias": true, |
| "norm_op": "torch.nn.modules.instancenorm.InstanceNorm3d", |
| "norm_op_kwargs": { |
| "eps": 1e-05, |
| "affine": true |
| }, |
| "dropout_op": null, |
| "dropout_op_kwargs": null, |
| "nonlin": "torch.nn.LeakyReLU", |
| "nonlin_kwargs": { |
| "inplace": true |
| } |
| }, |
| "_kw_requires_import": [ |
| "conv_op", |
| "norm_op", |
| "dropout_op", |
| "nonlin" |
| ] |
| }, |
| "batch_dice": false, |
| "next_stage": "3d_cascade_fullres" |
| }, |
| "3d_fullres": { |
| "data_identifier": "nnUNetPlans_3d_fullres", |
| "preprocessor_name": "DefaultPreprocessor", |
| "batch_size": 2, |
| "patch_size": [ |
| 96, |
| 160, |
| 160 |
| ], |
| "median_image_size_in_voxels": [ |
| 220.0, |
| 324.0, |
| 379.0 |
| ], |
| "spacing": [ |
| 1.0, |
| 1.0, |
| 1.0 |
| ], |
| "normalization_schemes": [ |
| "ZScoreNormalization" |
| ], |
| "use_mask_for_norm": [ |
| false |
| ], |
| "resampling_fn_data": "resample_data_or_seg_to_shape", |
| "resampling_fn_seg": "resample_data_or_seg_to_shape", |
| "resampling_fn_data_kwargs": { |
| "is_seg": false, |
| "order": 3, |
| "order_z": 0, |
| "force_separate_z": null |
| }, |
| "resampling_fn_seg_kwargs": { |
| "is_seg": true, |
| "order": 1, |
| "order_z": 0, |
| "force_separate_z": null |
| }, |
| "resampling_fn_probabilities": "resample_data_or_seg_to_shape", |
| "resampling_fn_probabilities_kwargs": { |
| "is_seg": false, |
| "order": 1, |
| "order_z": 0, |
| "force_separate_z": null |
| }, |
| "architecture": { |
| "network_class_name": "dynamic_network_architectures.architectures.unet.PlainConvUNet", |
| "arch_kwargs": { |
| "n_stages": 6, |
| "features_per_stage": [ |
| 32, |
| 64, |
| 128, |
| 256, |
| 320, |
| 320 |
| ], |
| "conv_op": "torch.nn.modules.conv.Conv3d", |
| "kernel_sizes": [ |
| [ |
| 3, |
| 3, |
| 3 |
| ], |
| [ |
| 3, |
| 3, |
| 3 |
| ], |
| [ |
| 3, |
| 3, |
| 3 |
| ], |
| [ |
| 3, |
| 3, |
| 3 |
| ], |
| [ |
| 3, |
| 3, |
| 3 |
| ], |
| [ |
| 3, |
| 3, |
| 3 |
| ] |
| ], |
| "strides": [ |
| [ |
| 1, |
| 1, |
| 1 |
| ], |
| [ |
| 2, |
| 2, |
| 2 |
| ], |
| [ |
| 2, |
| 2, |
| 2 |
| ], |
| [ |
| 2, |
| 2, |
| 2 |
| ], |
| [ |
| 2, |
| 2, |
| 2 |
| ], |
| [ |
| 1, |
| 2, |
| 2 |
| ] |
| ], |
| "n_conv_per_stage": [ |
| 2, |
| 2, |
| 2, |
| 2, |
| 2, |
| 2 |
| ], |
| "n_conv_per_stage_decoder": [ |
| 2, |
| 2, |
| 2, |
| 2, |
| 2 |
| ], |
| "conv_bias": true, |
| "norm_op": "torch.nn.modules.instancenorm.InstanceNorm3d", |
| "norm_op_kwargs": { |
| "eps": 1e-05, |
| "affine": true |
| }, |
| "dropout_op": null, |
| "dropout_op_kwargs": null, |
| "nonlin": "torch.nn.LeakyReLU", |
| "nonlin_kwargs": { |
| "inplace": true |
| } |
| }, |
| "_kw_requires_import": [ |
| "conv_op", |
| "norm_op", |
| "dropout_op", |
| "nonlin" |
| ] |
| }, |
| "batch_dice": true |
| }, |
| "3d_cascade_fullres": { |
| "inherits_from": "3d_fullres", |
| "previous_stage": "3d_lowres" |
| } |
| }, |
| "experiment_planner_used": "ExperimentPlanner", |
| "label_manager": "LabelManager", |
| "foreground_intensity_properties_per_channel": { |
| "0": { |
| "max": 32767.0, |
| "mean": 362.50750732421875, |
| "median": 167.0, |
| "min": -371.0, |
| "percentile_00_5": 3.0, |
| "percentile_99_5": 3696.0, |
| "std": 575.3319702148438 |
| } |
| } |
| } |
