Feature Extraction
Transformers
Safetensors
English
bert
text-classification
icd10
healthcare
medical
custom_code
text-embeddings-inference
Instructions to use UMCU/ICD10_classifier_base_English with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use UMCU/ICD10_classifier_base_English with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("feature-extraction", model="UMCU/ICD10_classifier_base_English", trust_remote_code=True)# pip install -U transformers accelerate # Load model directly from transformers import AutoTokenizer, AutoModelForSequenceClassification tokenizer = AutoTokenizer.from_pretrained("UMCU/ICD10_classifier_base_English", trust_remote_code=True) model = AutoModelForSequenceClassification.from_pretrained("UMCU/ICD10_classifier_base_English", trust_remote_code=True, device_map="auto") - Notebooks
- Google Colab
- Kaggle
Update README.md
Browse files
README.md
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@@ -96,8 +96,68 @@ def reform(features, how='softmax'):
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return torch.nn.functional.normalize(features.reshape(1,-1))
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feature_vector = reform(get_feature_vector(text))
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```
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return torch.nn.functional.normalize(features.reshape(1,-1))
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feature_vector = reform(get_feature_vector(text))
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```
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or with multiple texts
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```python
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def get_feature_vectors_with_stride(
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texts,
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stride=16,
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max_context_length=128,
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reformer=None
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):
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"""
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Extract one feature vector per document.
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Long documents are split into overlapping windows.
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Logits from all windows belonging to the same document are averaged.
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Returns:
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Tensor [n_documents, n_features]
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"""
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inputs = tokenizer(
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texts,
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return_tensors="pt",
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truncation=True,
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max_length=max_context_length,
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stride=stride,
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return_overflowing_tokens=True,
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padding=True,
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)
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# Maps each generated chunk back to its original document.
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sample_mapping = inputs.pop("overflow_to_sample_mapping")
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inputs = {
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key: value.to(device)
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for key, value in inputs.items()
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}
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with torch.no_grad():
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logits = model(**inputs).logits
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# logits:
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# [n_chunks, n_features]
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sample_mapping = sample_mapping.to(logits.device)
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features = []
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for sample_idx in range(len(texts)):
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mask = sample_mapping == sample_idx
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# Mean over all windows belonging to this document.
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if reformer is None:
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document_features = logits[mask].mean(dim=0)
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else:
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document_features = reform(logits[mask].mean(dim=0).flatten(), how=reformer)
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features.append(document_features)
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return torch.stack(features).cpu()
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```
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