Feature Extraction
Transformers
Safetensors
English
bert
text-classification
icd10
healthcare
medical
custom_code
text-embeddings-inference
Instructions to use UMCU/ICD10_classifier_base_English with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use UMCU/ICD10_classifier_base_English with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("feature-extraction", model="UMCU/ICD10_classifier_base_English", trust_remote_code=True)# pip install -U transformers accelerate # Load model directly from transformers import AutoTokenizer, AutoModelForSequenceClassification tokenizer = AutoTokenizer.from_pretrained("UMCU/ICD10_classifier_base_English", trust_remote_code=True) model = AutoModelForSequenceClassification.from_pretrained("UMCU/ICD10_classifier_base_English", trust_remote_code=True, device_map="auto") - Notebooks
- Google Colab
- Kaggle
Upload modeling.py
Browse files- modeling.py +111 -0
modeling.py
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import torch
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import torch.nn as nn
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from transformers import AutoModel, PreTrainedModel
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from transformers.modeling_outputs import SequenceClassifierOutput
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class CustomSequenceClassificationModel(PreTrainedModel):
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"""Sequence classification model with a configurable GELU + dropout dense head."""
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def __init__(
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self,
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config,
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head_layers: int = 1,
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head_dropout: float = 0.1,
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):
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super().__init__(config)
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self.num_labels = config.num_labels
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self.config = config
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self.backbone = AutoModel.from_config(config)
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hidden_size = getattr(config, "hidden_size", None)
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if hidden_size is None:
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raise ValueError(
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"Backbone config is missing 'hidden_size'; cannot build custom head."
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)
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self.classifier = self._build_head(
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input_dim=hidden_size,
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output_dim=self.num_labels,
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head_layers=head_layers,
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head_dropout=head_dropout,
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)
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self.post_init()
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@staticmethod
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def _build_head(
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input_dim: int, output_dim: int, head_layers: int, head_dropout: float
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) -> nn.Module:
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if head_layers < 1:
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raise ValueError("head_layers must be >= 1")
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# head_layers includes the final projection layer.
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# For head_layers=1 this is equivalent to a single linear classifier.
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if head_layers == 1:
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return nn.Linear(input_dim, output_dim)
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layers = []
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for _ in range(head_layers - 1):
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layers.extend(
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[
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nn.Linear(input_dim, input_dim),
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nn.GELU(),
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nn.Dropout(head_dropout),
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]
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)
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layers.append(nn.Linear(input_dim, output_dim))
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return nn.Sequential(*layers)
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def _pooled_representation(self, outputs) -> torch.Tensor:
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if hasattr(outputs, "pooler_output") and outputs.pooler_output is not None:
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return outputs.pooler_output
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return outputs.last_hidden_state[:, 0]
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def forward(
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self,
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input_ids=None,
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attention_mask=None,
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token_type_ids=None,
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labels=None,
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**kwargs,
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):
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backbone_inputs = {
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"input_ids": input_ids,
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"attention_mask": attention_mask,
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**kwargs,
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}
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if token_type_ids is not None:
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backbone_inputs["token_type_ids"] = token_type_ids
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backbone_outputs = self.backbone(**backbone_inputs)
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pooled = self._pooled_representation(backbone_outputs)
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logits = self.classifier(pooled)
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loss = None
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if labels is not None:
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if self.config.problem_type is None:
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if self.num_labels == 1:
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self.config.problem_type = "regression"
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elif torch.is_floating_point(labels):
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self.config.problem_type = "multi_label_classification"
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else:
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self.config.problem_type = "single_label_classification"
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if self.config.problem_type == "regression":
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loss_fct = nn.MSELoss()
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loss = loss_fct(logits.squeeze(), labels.squeeze())
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elif self.config.problem_type == "single_label_classification":
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loss_fct = nn.CrossEntropyLoss()
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loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
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else:
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loss_fct = nn.BCEWithLogitsLoss()
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loss = loss_fct(logits, labels)
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return SequenceClassifierOutput(
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loss=loss,
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logits=logits,
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hidden_states=backbone_outputs.hidden_states,
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attentions=backbone_outputs.attentions,
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)
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