Hugging Face's logo

VBoussot
/
ImpactReg

Image-to-Image
konfai
medical-imaging
registration
deformable
multimodal
ct
mri
cbct
Model card Files
xet
 Community
VBoussot commited on
Commit
31fcdb4
·
verified ·
1 Parent(s): 8c197ec

Evaluation_with_seg: cast labels to int32, not uint8

Browse files

uint8 folded every label above 255 into another (256 became background), so the segmentation metrics of a
registration scored the wrong structures for a label map with more than 255 labels.

Files changed (9) hide show
  1. ConvexAdam_Coarse/Evaluation_with_seg.yml +2 -2
  2. ConvexAdam_Composite/Evaluation_with_seg.yml +2 -2
  3. Elastix_IMPACT_Jacobian/Evaluation_with_seg.yml +2 -2
  4. Elastix_IMPACT_Static/Evaluation_with_seg.yml +2 -2
  5. FireANTs_Anatomix/Evaluation_with_seg.yml +2 -2
  6. FireANTs_IMPACT/Evaluation_with_seg.yml +2 -2
  7. FireANTs_SyN/Evaluation_with_seg.yml +2 -2
  8. Generic_Rigid/Evaluation_with_seg.yml +2 -2
  9. Generic_Rigid_BSpline/Evaluation_with_seg.yml +2 -2
ConvexAdam_Coarse/Evaluation_with_seg.yml CHANGED
@@ -15,13 +15,13 @@ Evaluator:
15
  FixedSeg:
16
  transforms:
17
  TensorCast:
18
- dtype: uint8
19
  Reference_0:
20
  groups_dest:
21
  MovingSeg:
22
  transforms:
23
  TensorCast:
24
- dtype: uint8
25
  subset: None
26
  dataset_filenames:
27
  - ./Dataset:mha
 
15
  FixedSeg:
16
  transforms:
17
  TensorCast:
18
+ dtype: int32
19
  Reference_0:
20
  groups_dest:
21
  MovingSeg:
22
  transforms:
23
  TensorCast:
24
+ dtype: int32
25
  subset: None
26
  dataset_filenames:
27
  - ./Dataset:mha
ConvexAdam_Composite/Evaluation_with_seg.yml CHANGED
@@ -15,13 +15,13 @@ Evaluator:
15
  FixedSeg:
16
  transforms:
17
  TensorCast:
18
- dtype: uint8
19
  Reference_0:
20
  groups_dest:
21
  MovingSeg:
22
  transforms:
23
  TensorCast:
24
- dtype: uint8
25
  subset: None
26
  dataset_filenames:
27
  - ./Dataset:mha
 
15
  FixedSeg:
16
  transforms:
17
  TensorCast:
18
+ dtype: int32
19
  Reference_0:
20
  groups_dest:
21
  MovingSeg:
22
  transforms:
23
  TensorCast:
24
+ dtype: int32
25
  subset: None
26
  dataset_filenames:
27
  - ./Dataset:mha
Elastix_IMPACT_Jacobian/Evaluation_with_seg.yml CHANGED
@@ -15,13 +15,13 @@ Evaluator:
15
  FixedSeg:
16
  transforms:
17
  TensorCast:
18
- dtype: uint8
19
  Reference_0:
20
  groups_dest:
21
  MovingSeg:
22
  transforms:
23
  TensorCast:
24
- dtype: uint8
25
  subset: None
26
  dataset_filenames:
27
  - ./Dataset:mha
 
15
  FixedSeg:
16
  transforms:
17
  TensorCast:
18
+ dtype: int32
19
  Reference_0:
20
  groups_dest:
21
  MovingSeg:
22
  transforms:
23
  TensorCast:
24
+ dtype: int32
25
  subset: None
26
  dataset_filenames:
27
  - ./Dataset:mha
Elastix_IMPACT_Static/Evaluation_with_seg.yml CHANGED
@@ -15,13 +15,13 @@ Evaluator:
15
  FixedSeg:
16
  transforms:
17
  TensorCast:
18
- dtype: uint8
19
  Reference_0:
20
  groups_dest:
21
  MovingSeg:
22
  transforms:
23
  TensorCast:
24
- dtype: uint8
25
  subset: None
26
  dataset_filenames:
27
  - ./Dataset:mha
 
15
  FixedSeg:
16
  transforms:
17
  TensorCast:
18
+ dtype: int32
19
  Reference_0:
20
  groups_dest:
21
  MovingSeg:
22
  transforms:
23
  TensorCast:
24
+ dtype: int32
25
  subset: None
26
  dataset_filenames:
27
  - ./Dataset:mha
FireANTs_Anatomix/Evaluation_with_seg.yml CHANGED
@@ -15,13 +15,13 @@ Evaluator:
15
  FixedSeg:
16
  transforms:
17
  TensorCast:
18
- dtype: uint8
19
  Reference_0:
20
  groups_dest:
21
  MovingSeg:
22
  transforms:
23
  TensorCast:
24
- dtype: uint8
25
  subset: None
26
  dataset_filenames:
27
  - ./Dataset:mha
 
15
  FixedSeg:
16
  transforms:
17
  TensorCast:
18
+ dtype: int32
19
  Reference_0:
20
  groups_dest:
21
  MovingSeg:
22
  transforms:
23
  TensorCast:
24
+ dtype: int32
25
  subset: None
26
  dataset_filenames:
27
  - ./Dataset:mha
FireANTs_IMPACT/Evaluation_with_seg.yml CHANGED
@@ -15,13 +15,13 @@ Evaluator:
15
  FixedSeg:
16
  transforms:
17
  TensorCast:
18
- dtype: uint8
19
  Reference_0:
20
  groups_dest:
21
  MovingSeg:
22
  transforms:
23
  TensorCast:
24
- dtype: uint8
25
  subset: None
26
  dataset_filenames:
27
  - ./Dataset:mha
 
15
  FixedSeg:
16
  transforms:
17
  TensorCast:
18
+ dtype: int32
19
  Reference_0:
20
  groups_dest:
21
  MovingSeg:
22
  transforms:
23
  TensorCast:
24
+ dtype: int32
25
  subset: None
26
  dataset_filenames:
27
  - ./Dataset:mha
FireANTs_SyN/Evaluation_with_seg.yml CHANGED
@@ -15,13 +15,13 @@ Evaluator:
15
  FixedSeg:
16
  transforms:
17
  TensorCast:
18
- dtype: uint8
19
  Reference_0:
20
  groups_dest:
21
  MovingSeg:
22
  transforms:
23
  TensorCast:
24
- dtype: uint8
25
  subset: None
26
  dataset_filenames:
27
  - ./Dataset:mha
 
15
  FixedSeg:
16
  transforms:
17
  TensorCast:
18
+ dtype: int32
19
  Reference_0:
20
  groups_dest:
21
  MovingSeg:
22
  transforms:
23
  TensorCast:
24
+ dtype: int32
25
  subset: None
26
  dataset_filenames:
27
  - ./Dataset:mha
Generic_Rigid/Evaluation_with_seg.yml CHANGED
@@ -15,13 +15,13 @@ Evaluator:
15
  FixedSeg:
16
  transforms:
17
  TensorCast:
18
- dtype: uint8
19
  Reference_0:
20
  groups_dest:
21
  MovingSeg:
22
  transforms:
23
  TensorCast:
24
- dtype: uint8
25
  subset: None
26
  dataset_filenames:
27
  - ./Dataset:mha
 
15
  FixedSeg:
16
  transforms:
17
  TensorCast:
18
+ dtype: int32
19
  Reference_0:
20
  groups_dest:
21
  MovingSeg:
22
  transforms:
23
  TensorCast:
24
+ dtype: int32
25
  subset: None
26
  dataset_filenames:
27
  - ./Dataset:mha
Generic_Rigid_BSpline/Evaluation_with_seg.yml CHANGED
@@ -15,13 +15,13 @@ Evaluator:
15
  FixedSeg:
16
  transforms:
17
  TensorCast:
18
- dtype: uint8
19
  Reference_0:
20
  groups_dest:
21
  MovingSeg:
22
  transforms:
23
  TensorCast:
24
- dtype: uint8
25
  subset: None
26
  dataset_filenames:
27
  - ./Dataset:mha
 
15
  FixedSeg:
16
  transforms:
17
  TensorCast:
18
+ dtype: int32
19
  Reference_0:
20
  groups_dest:
21
  MovingSeg:
22
  transforms:
23
  TensorCast:
24
+ dtype: int32
25
  subset: None
26
  dataset_filenames:
27
  - ./Dataset:mha