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base_model: WGLab/PoreFM-DNA
tags:
- porefm
- pytorch
- nanopore
- dna
- prototype
---
# PoreFM-DNA prototype
PoreFM prototype model for Oxford Nanopore DNA modification detection using fitted residual effects.
Model version: **0.1.0**. Chemistry: **R10.4.1 (E8.2, 400 bps)**. Embedding dimension: **384**.
| File | Contents |
|---|---|
| `R10.4.1_prototype.pt` | Complete backbone and fitted effects model in one inference bundle. |
Class order: `A`, `C`, `G`, `T`, `5mC`, `5hmC`, `6mA`.
Model configuration and preprocessing are embedded in the checkpoints. Setup and usage are documented in the PoreFM code repository.
`manifest.json` records artifact identities and tensor fingerprints. `SHA256SUMS` verifies checkpoint downloads. Tensor fingerprints are independent of descriptive metadata; file hashes identify exact bytes. Documentation-only changes leave the model version unchanged.
|