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base_model: WGLab/PoreFM-RNA
tags:
- porefm
- pytorch
- nanopore
- rna
- supervised-classifier
---
# PoreFM-RNA pseU
Supervised PoreFM classifier for pseudouridine detection in Oxford Nanopore RNA reads.
Model version: **0.1.0**. Chemistry: **RNA004**. Embedding dimension: **512**.
| File | Contents |
|---|---|
| `model.pt` | Complete backbone and classification head with preprocessing and modification-tag defaults. |
Class order: `U`, `pseU` (canonical uridine, pseudouridine).
Saved BAM-tag defaults: base `T`; modification code `17802` for pseudouridine. RNA uridine is represented as `T` in BAM sequences and modification tags.
Model configuration and preprocessing are embedded in the checkpoints. Setup and usage are documented in the PoreFM code repository.
`manifest.json` records artifact identities and tensor fingerprints. `SHA256SUMS` verifies checkpoint downloads. Tensor fingerprints are independent of descriptive metadata; file hashes identify exact bytes. Documentation-only changes leave the model version unchanged.
|