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| """ | |
| pytorch grid_sample doesn't support second-order derivative | |
| implement custom version | |
| """ | |
| import torch | |
| import torch.nn.functional as F | |
| import numpy as np | |
| def grid_sample_2d(image, optical): | |
| N, C, IH, IW = image.shape | |
| _, H, W, _ = optical.shape | |
| ix = optical[..., 0] | |
| iy = optical[..., 1] | |
| ix = ((ix + 1) / 2) * (IW - 1); | |
| iy = ((iy + 1) / 2) * (IH - 1); | |
| with torch.no_grad(): | |
| ix_nw = torch.floor(ix); | |
| iy_nw = torch.floor(iy); | |
| ix_ne = ix_nw + 1; | |
| iy_ne = iy_nw; | |
| ix_sw = ix_nw; | |
| iy_sw = iy_nw + 1; | |
| ix_se = ix_nw + 1; | |
| iy_se = iy_nw + 1; | |
| nw = (ix_se - ix) * (iy_se - iy) | |
| ne = (ix - ix_sw) * (iy_sw - iy) | |
| sw = (ix_ne - ix) * (iy - iy_ne) | |
| se = (ix - ix_nw) * (iy - iy_nw) | |
| with torch.no_grad(): | |
| torch.clamp(ix_nw, 0, IW - 1, out=ix_nw) | |
| torch.clamp(iy_nw, 0, IH - 1, out=iy_nw) | |
| torch.clamp(ix_ne, 0, IW - 1, out=ix_ne) | |
| torch.clamp(iy_ne, 0, IH - 1, out=iy_ne) | |
| torch.clamp(ix_sw, 0, IW - 1, out=ix_sw) | |
| torch.clamp(iy_sw, 0, IH - 1, out=iy_sw) | |
| torch.clamp(ix_se, 0, IW - 1, out=ix_se) | |
| torch.clamp(iy_se, 0, IH - 1, out=iy_se) | |
| image = image.view(N, C, IH * IW) | |
| nw_val = torch.gather(image, 2, (iy_nw * IW + ix_nw).long().view(N, 1, H * W).repeat(1, C, 1)) | |
| ne_val = torch.gather(image, 2, (iy_ne * IW + ix_ne).long().view(N, 1, H * W).repeat(1, C, 1)) | |
| sw_val = torch.gather(image, 2, (iy_sw * IW + ix_sw).long().view(N, 1, H * W).repeat(1, C, 1)) | |
| se_val = torch.gather(image, 2, (iy_se * IW + ix_se).long().view(N, 1, H * W).repeat(1, C, 1)) | |
| out_val = (nw_val.view(N, C, H, W) * nw.view(N, 1, H, W) + | |
| ne_val.view(N, C, H, W) * ne.view(N, 1, H, W) + | |
| sw_val.view(N, C, H, W) * sw.view(N, 1, H, W) + | |
| se_val.view(N, C, H, W) * se.view(N, 1, H, W)) | |
| return out_val | |
| # - checked for correctness | |
| def grid_sample_3d(volume, optical): | |
| """ | |
| bilinear sampling cannot guarantee continuous first-order gradient | |
| mimic pytorch grid_sample function | |
| The 8 corner points of a volume noted as: 4 points (front view); 4 points (back view) | |
| fnw (front north west) point | |
| bse (back south east) point | |
| :param volume: [B, C, X, Y, Z] | |
| :param optical: [B, x, y, z, 3] | |
| :return: | |
| """ | |
| N, C, ID, IH, IW = volume.shape | |
| _, D, H, W, _ = optical.shape | |
| ix = optical[..., 0] | |
| iy = optical[..., 1] | |
| iz = optical[..., 2] | |
| ix = ((ix + 1) / 2) * (IW - 1) | |
| iy = ((iy + 1) / 2) * (IH - 1) | |
| iz = ((iz + 1) / 2) * (ID - 1) | |
| mask_x = (ix > 0) & (ix < IW) | |
| mask_y = (iy > 0) & (iy < IH) | |
| mask_z = (iz > 0) & (iz < ID) | |
| mask = mask_x & mask_y & mask_z # [B, x, y, z] | |
| mask = mask[:, None, :, :, :].repeat(1, C, 1, 1, 1) # [B, C, x, y, z] | |
| with torch.no_grad(): | |
| # back north west | |
| ix_bnw = torch.floor(ix) | |
| iy_bnw = torch.floor(iy) | |
| iz_bnw = torch.floor(iz) | |
| ix_bne = ix_bnw + 1 | |
| iy_bne = iy_bnw | |
| iz_bne = iz_bnw | |
| ix_bsw = ix_bnw | |
| iy_bsw = iy_bnw + 1 | |
| iz_bsw = iz_bnw | |
| ix_bse = ix_bnw + 1 | |
| iy_bse = iy_bnw + 1 | |
| iz_bse = iz_bnw | |
| # front view | |
| ix_fnw = ix_bnw | |
| iy_fnw = iy_bnw | |
| iz_fnw = iz_bnw + 1 | |
| ix_fne = ix_bnw + 1 | |
| iy_fne = iy_bnw | |
| iz_fne = iz_bnw + 1 | |
| ix_fsw = ix_bnw | |
| iy_fsw = iy_bnw + 1 | |
| iz_fsw = iz_bnw + 1 | |
| ix_fse = ix_bnw + 1 | |
| iy_fse = iy_bnw + 1 | |
| iz_fse = iz_bnw + 1 | |
| # back view | |
| bnw = (ix_fse - ix) * (iy_fse - iy) * (iz_fse - iz) # smaller volume, larger weight | |
| bne = (ix - ix_fsw) * (iy_fsw - iy) * (iz_fsw - iz) | |
| bsw = (ix_fne - ix) * (iy - iy_fne) * (iz_fne - iz) | |
| bse = (ix - ix_fnw) * (iy - iy_fnw) * (iz_fnw - iz) | |
| # front view | |
| fnw = (ix_bse - ix) * (iy_bse - iy) * (iz - iz_bse) # smaller volume, larger weight | |
| fne = (ix - ix_bsw) * (iy_bsw - iy) * (iz - iz_bsw) | |
| fsw = (ix_bne - ix) * (iy - iy_bne) * (iz - iz_bne) | |
| fse = (ix - ix_bnw) * (iy - iy_bnw) * (iz - iz_bnw) | |
| with torch.no_grad(): | |
| # back view | |
| torch.clamp(ix_bnw, 0, IW - 1, out=ix_bnw) | |
| torch.clamp(iy_bnw, 0, IH - 1, out=iy_bnw) | |
| torch.clamp(iz_bnw, 0, ID - 1, out=iz_bnw) | |
| torch.clamp(ix_bne, 0, IW - 1, out=ix_bne) | |
| torch.clamp(iy_bne, 0, IH - 1, out=iy_bne) | |
| torch.clamp(iz_bne, 0, ID - 1, out=iz_bne) | |
| torch.clamp(ix_bsw, 0, IW - 1, out=ix_bsw) | |
| torch.clamp(iy_bsw, 0, IH - 1, out=iy_bsw) | |
| torch.clamp(iz_bsw, 0, ID - 1, out=iz_bsw) | |
| torch.clamp(ix_bse, 0, IW - 1, out=ix_bse) | |
| torch.clamp(iy_bse, 0, IH - 1, out=iy_bse) | |
| torch.clamp(iz_bse, 0, ID - 1, out=iz_bse) | |
| # front view | |
| torch.clamp(ix_fnw, 0, IW - 1, out=ix_fnw) | |
| torch.clamp(iy_fnw, 0, IH - 1, out=iy_fnw) | |
| torch.clamp(iz_fnw, 0, ID - 1, out=iz_fnw) | |
| torch.clamp(ix_fne, 0, IW - 1, out=ix_fne) | |
| torch.clamp(iy_fne, 0, IH - 1, out=iy_fne) | |
| torch.clamp(iz_fne, 0, ID - 1, out=iz_fne) | |
| torch.clamp(ix_fsw, 0, IW - 1, out=ix_fsw) | |
| torch.clamp(iy_fsw, 0, IH - 1, out=iy_fsw) | |
| torch.clamp(iz_fsw, 0, ID - 1, out=iz_fsw) | |
| torch.clamp(ix_fse, 0, IW - 1, out=ix_fse) | |
| torch.clamp(iy_fse, 0, IH - 1, out=iy_fse) | |
| torch.clamp(iz_fse, 0, ID - 1, out=iz_fse) | |
| # xxx = volume[:, :, iz_bnw.long(), iy_bnw.long(), ix_bnw.long()] | |
| volume = volume.view(N, C, ID * IH * IW) | |
| # yyy = volume[:, :, (iz_bnw * ID + iy_bnw * IW + ix_bnw).long()] | |
| # back view | |
| bnw_val = torch.gather(volume, 2, | |
| (iz_bnw * ID ** 2 + iy_bnw * IW + ix_bnw).long().view(N, 1, D * H * W).repeat(1, C, 1)) | |
| bne_val = torch.gather(volume, 2, | |
| (iz_bne * ID ** 2 + iy_bne * IW + ix_bne).long().view(N, 1, D * H * W).repeat(1, C, 1)) | |
| bsw_val = torch.gather(volume, 2, | |
| (iz_bsw * ID ** 2 + iy_bsw * IW + ix_bsw).long().view(N, 1, D * H * W).repeat(1, C, 1)) | |
| bse_val = torch.gather(volume, 2, | |
| (iz_bse * ID ** 2 + iy_bse * IW + ix_bse).long().view(N, 1, D * H * W).repeat(1, C, 1)) | |
| # front view | |
| fnw_val = torch.gather(volume, 2, | |
| (iz_fnw * ID ** 2 + iy_fnw * IW + ix_fnw).long().view(N, 1, D * H * W).repeat(1, C, 1)) | |
| fne_val = torch.gather(volume, 2, | |
| (iz_fne * ID ** 2 + iy_fne * IW + ix_fne).long().view(N, 1, D * H * W).repeat(1, C, 1)) | |
| fsw_val = torch.gather(volume, 2, | |
| (iz_fsw * ID ** 2 + iy_fsw * IW + ix_fsw).long().view(N, 1, D * H * W).repeat(1, C, 1)) | |
| fse_val = torch.gather(volume, 2, | |
| (iz_fse * ID ** 2 + iy_fse * IW + ix_fse).long().view(N, 1, D * H * W).repeat(1, C, 1)) | |
| out_val = ( | |
| # back | |
| bnw_val.view(N, C, D, H, W) * bnw.view(N, 1, D, H, W) + | |
| bne_val.view(N, C, D, H, W) * bne.view(N, 1, D, H, W) + | |
| bsw_val.view(N, C, D, H, W) * bsw.view(N, 1, D, H, W) + | |
| bse_val.view(N, C, D, H, W) * bse.view(N, 1, D, H, W) + | |
| # front | |
| fnw_val.view(N, C, D, H, W) * fnw.view(N, 1, D, H, W) + | |
| fne_val.view(N, C, D, H, W) * fne.view(N, 1, D, H, W) + | |
| fsw_val.view(N, C, D, H, W) * fsw.view(N, 1, D, H, W) + | |
| fse_val.view(N, C, D, H, W) * fse.view(N, 1, D, H, W) | |
| ) | |
| # * zero padding | |
| out_val = torch.where(mask, out_val, torch.zeros_like(out_val).float().to(out_val.device)) | |
| return out_val | |
| # Interpolation kernel | |
| def get_weight(s, a=-0.5): | |
| mask_0 = (torch.abs(s) >= 0) & (torch.abs(s) <= 1) | |
| mask_1 = (torch.abs(s) > 1) & (torch.abs(s) <= 2) | |
| mask_2 = torch.abs(s) > 2 | |
| weight = torch.zeros_like(s).to(s.device) | |
| weight = torch.where(mask_0, (a + 2) * (torch.abs(s) ** 3) - (a + 3) * (torch.abs(s) ** 2) + 1, weight) | |
| weight = torch.where(mask_1, | |
| a * (torch.abs(s) ** 3) - (5 * a) * (torch.abs(s) ** 2) + (8 * a) * torch.abs(s) - 4 * a, | |
| weight) | |
| # if (torch.abs(s) >= 0) & (torch.abs(s) <= 1): | |
| # return (a + 2) * (torch.abs(s) ** 3) - (a + 3) * (torch.abs(s) ** 2) + 1 | |
| # | |
| # elif (torch.abs(s) > 1) & (torch.abs(s) <= 2): | |
| # return a * (torch.abs(s) ** 3) - (5 * a) * (torch.abs(s) ** 2) + (8 * a) * torch.abs(s) - 4 * a | |
| # return 0 | |
| return weight | |
| def cubic_interpolate(p, x): | |
| """ | |
| one dimensional cubic interpolation | |
| :param p: [N, 4] (4) should be in order | |
| :param x: [N] | |
| :return: | |
| """ | |
| return p[:, 1] + 0.5 * x * (p[:, 2] - p[:, 0] + x * ( | |
| 2.0 * p[:, 0] - 5.0 * p[:, 1] + 4.0 * p[:, 2] - p[:, 3] + x * ( | |
| 3.0 * (p[:, 1] - p[:, 2]) + p[:, 3] - p[:, 0]))) | |
| def bicubic_interpolate(p, x, y, if_batch=True): | |
| """ | |
| two dimensional cubic interpolation | |
| :param p: [N, 4, 4] | |
| :param x: [N] | |
| :param y: [N] | |
| :return: | |
| """ | |
| num = p.shape[0] | |
| if not if_batch: | |
| arr0 = cubic_interpolate(p[:, 0, :], x) # [N] | |
| arr1 = cubic_interpolate(p[:, 1, :], x) | |
| arr2 = cubic_interpolate(p[:, 2, :], x) | |
| arr3 = cubic_interpolate(p[:, 3, :], x) | |
| return cubic_interpolate(torch.stack([arr0, arr1, arr2, arr3], dim=-1), y) # [N] | |
| else: | |
| x = x[:, None].repeat(1, 4).view(-1) | |
| p = p.contiguous().view(num * 4, 4) | |
| arr = cubic_interpolate(p, x) | |
| arr = arr.view(num, 4) | |
| return cubic_interpolate(arr, y) | |
| def tricubic_interpolate(p, x, y, z): | |
| """ | |
| three dimensional cubic interpolation | |
| :param p: [N,4,4,4] | |
| :param x: [N] | |
| :param y: [N] | |
| :param z: [N] | |
| :return: | |
| """ | |
| num = p.shape[0] | |
| arr0 = bicubic_interpolate(p[:, 0, :, :], x, y) # [N] | |
| arr1 = bicubic_interpolate(p[:, 1, :, :], x, y) | |
| arr2 = bicubic_interpolate(p[:, 2, :, :], x, y) | |
| arr3 = bicubic_interpolate(p[:, 3, :, :], x, y) | |
| return cubic_interpolate(torch.stack([arr0, arr1, arr2, arr3], dim=-1), z) # [N] | |
| def cubic_interpolate_batch(p, x): | |
| """ | |
| one dimensional cubic interpolation | |
| :param p: [B, N, 4] (4) should be in order | |
| :param x: [B, N] | |
| :return: | |
| """ | |
| return p[:, :, 1] + 0.5 * x * (p[:, :, 2] - p[:, :, 0] + x * ( | |
| 2.0 * p[:, :, 0] - 5.0 * p[:, :, 1] + 4.0 * p[:, :, 2] - p[:, :, 3] + x * ( | |
| 3.0 * (p[:, :, 1] - p[:, :, 2]) + p[:, :, 3] - p[:, :, 0]))) | |
| def bicubic_interpolate_batch(p, x, y): | |
| """ | |
| two dimensional cubic interpolation | |
| :param p: [B, N, 4, 4] | |
| :param x: [B, N] | |
| :param y: [B, N] | |
| :return: | |
| """ | |
| B, N, _, _ = p.shape | |
| x = x[:, :, None].repeat(1, 1, 4).view(B, N * 4) # [B, N*4] | |
| arr = cubic_interpolate_batch(p.contiguous().view(B, N * 4, 4), x) | |
| arr = arr.view(B, N, 4) | |
| return cubic_interpolate_batch(arr, y) # [B, N] | |
| # * batch version cannot speed up training | |
| def tricubic_interpolate_batch(p, x, y, z): | |
| """ | |
| three dimensional cubic interpolation | |
| :param p: [N,4,4,4] | |
| :param x: [N] | |
| :param y: [N] | |
| :param z: [N] | |
| :return: | |
| """ | |
| N = p.shape[0] | |
| x = x[None, :].repeat(4, 1) | |
| y = y[None, :].repeat(4, 1) | |
| p = p.permute(1, 0, 2, 3).contiguous() | |
| arr = bicubic_interpolate_batch(p[:, :, :, :], x, y) # [4, N] | |
| arr = arr.permute(1, 0).contiguous() # [N, 4] | |
| return cubic_interpolate(arr, z) # [N] | |
| def tricubic_sample_3d(volume, optical): | |
| """ | |
| tricubic sampling; can guarantee continuous gradient (interpolation border) | |
| :param volume: [B, C, ID, IH, IW] | |
| :param optical: [B, D, H, W, 3] | |
| :param sample_num: | |
| :return: | |
| """ | |
| def get_shifts(x): | |
| x1 = -1 * (1 + x - torch.floor(x)) | |
| x2 = -1 * (x - torch.floor(x)) | |
| x3 = torch.floor(x) + 1 - x | |
| x4 = torch.floor(x) + 2 - x | |
| return torch.stack([x1, x2, x3, x4], dim=-1) # (B,d,h,w,4) | |
| N, C, ID, IH, IW = volume.shape | |
| _, D, H, W, _ = optical.shape | |
| device = volume.device | |
| ix = optical[..., 0] | |
| iy = optical[..., 1] | |
| iz = optical[..., 2] | |
| ix = ((ix + 1) / 2) * (IW - 1) # (B,d,h,w) | |
| iy = ((iy + 1) / 2) * (IH - 1) | |
| iz = ((iz + 1) / 2) * (ID - 1) | |
| ix = ix.view(-1) | |
| iy = iy.view(-1) | |
| iz = iz.view(-1) | |
| with torch.no_grad(): | |
| shifts_x = get_shifts(ix).view(-1, 4) # (B*d*h*w,4) | |
| shifts_y = get_shifts(iy).view(-1, 4) | |
| shifts_z = get_shifts(iz).view(-1, 4) | |
| perm_weights = torch.ones([N * D * H * W, 4 * 4 * 4]).long().to(device) | |
| perm = torch.cumsum(perm_weights, dim=-1) - 1 # (B*d*h*w,64) | |
| perm_z = perm // 16 # [N*D*H*W, num] | |
| perm_y = (perm - perm_z * 16) // 4 | |
| perm_x = (perm - perm_z * 16 - perm_y * 4) | |
| shifts_x = torch.gather(shifts_x, 1, perm_x) # [N*D*H*W, num] | |
| shifts_y = torch.gather(shifts_y, 1, perm_y) | |
| shifts_z = torch.gather(shifts_z, 1, perm_z) | |
| ix_target = (ix[:, None] + shifts_x).long() # [N*D*H*W, num] | |
| iy_target = (iy[:, None] + shifts_y).long() | |
| iz_target = (iz[:, None] + shifts_z).long() | |
| torch.clamp(ix_target, 0, IW - 1, out=ix_target) | |
| torch.clamp(iy_target, 0, IH - 1, out=iy_target) | |
| torch.clamp(iz_target, 0, ID - 1, out=iz_target) | |
| local_dist_x = ix - ix_target[:, 1] # ! attention here is [:, 1] | |
| local_dist_y = iy - iy_target[:, 1 + 4] | |
| local_dist_z = iz - iz_target[:, 1 + 16] | |
| local_dist_x = local_dist_x.view(N, 1, D * H * W).repeat(1, C, 1).view(-1) | |
| local_dist_y = local_dist_y.view(N, 1, D * H * W).repeat(1, C, 1).view(-1) | |
| local_dist_z = local_dist_z.view(N, 1, D * H * W).repeat(1, C, 1).view(-1) | |
| # ! attention: IW is correct | |
| idx_target = iz_target * ID ** 2 + iy_target * IW + ix_target # [N*D*H*W, num] | |
| volume = volume.view(N, C, ID * IH * IW) | |
| out = torch.gather(volume, 2, | |
| idx_target.view(N, 1, D * H * W * 64).repeat(1, C, 1)) | |
| out = out.view(N * C * D * H * W, 4, 4, 4) | |
| # - tricubic_interpolate() is a bit faster than tricubic_interpolate_batch() | |
| final = tricubic_interpolate(out, local_dist_x, local_dist_y, local_dist_z).view(N, C, D, H, W) # [N,C,D,H,W] | |
| return final | |
| if __name__ == "__main__": | |
| # image = torch.Tensor([[1, 2, 3], [4, 5, 6], [7, 8, 9]]).view(1, 3, 1, 3) | |
| # | |
| # optical = torch.Tensor([0.9, 0.5, 0.6, -0.7]).view(1, 1, 2, 2) | |
| # | |
| # print(grid_sample_2d(image, optical)) | |
| # | |
| # print(F.grid_sample(image, optical, padding_mode='border', align_corners=True)) | |
| from ops.generate_grids import generate_grid | |
| p = torch.tensor([x for x in range(4)]).view(1, 4).float() | |
| v = cubic_interpolate(p, torch.tensor([0.5]).view(1)) | |
| # v = bicubic_interpolate(p, torch.tensor([2/3]).view(1) , torch.tensor([2/3]).view(1)) | |
| vsize = 9 | |
| volume = generate_grid([vsize, vsize, vsize], 1) # [1,3,10,10,10] | |
| # volume = torch.tensor([x for x in range(1000)]).view(1, 1, 10, 10, 10).float() | |
| X, Y, Z = 0, 0, 6 | |
| x = 2 * X / (vsize - 1) - 1 | |
| y = 2 * Y / (vsize - 1) - 1 | |
| z = 2 * Z / (vsize - 1) - 1 | |
| # print(volume[:, :, Z, Y, X]) | |
| # volume = volume.view(1, 3, -1) | |
| # xx = volume[:, :, Z * 9*9 + Y * 9 + X] | |
| optical = torch.Tensor([-0.6, -0.7, 0.5, 0.3, 0.5, 0.5]).view(1, 1, 1, 2, 3) | |
| print(F.grid_sample(volume, optical, padding_mode='border', align_corners=True)) | |
| print(grid_sample_3d(volume, optical)) | |
| print(tricubic_sample_3d(volume, optical)) | |
| # target, relative_coords = implicit_sample_3d(volume, optical, 1) | |
| # print(target) | |