| |
| ADENINE_TKN = 'A' |
| CYTOSINE_TKN = 'C' |
| URACIL_TKN = 'U' |
| GUANINE_TKN = 'G' |
| THYMINE_TKN = 'T' |
| INOSINE_TKN = 'I' |
|
|
| ANY_NUCLEOTIDE_TKN = 'N' |
|
|
| |
| RNA_TOKENS = [ADENINE_TKN, CYTOSINE_TKN, GUANINE_TKN, THYMINE_TKN, INOSINE_TKN, "R", "Y", "K", "M", "S", "W", "B", "D", "H", "V", ANY_NUCLEOTIDE_TKN, "-"] |
|
|
| CLS_TKN = "<cls>" |
| PAD_TKN = "<pad>" |
| BOS_TKN = "<bos>" |
| EOS_TKN = "<eos>" |
| UNK_TKN = "<unk>" |
| MASK_TKN = "<mask>" |
|
|
| CODON_DICT = { |
| 'ATA':'I', 'ATC':'I', 'ATT':'I', 'ATG':'M', |
| 'ACA':'T', 'ACC':'T', 'ACG':'T', 'ACT':'T', |
| 'AAC':'N', 'AAT':'N', 'AAA':'K', 'AAG':'K', |
| 'AGC':'S', 'AGT':'S', 'AGA':'R', 'AGG':'R', |
| 'CTA':'L', 'CTC':'L', 'CTG':'L', 'CTT':'L', |
| 'CCA':'P', 'CCC':'P', 'CCG':'P', 'CCT':'P', |
| 'CAC':'H', 'CAT':'H', 'CAA':'Q', 'CAG':'Q', |
| 'CGA':'R', 'CGC':'R', 'CGG':'R', 'CGT':'R', |
| 'GTA':'V', 'GTC':'V', 'GTG':'V', 'GTT':'V', |
| 'GCA':'A', 'GCC':'A', 'GCG':'A', 'GCT':'A', |
| 'GAC':'D', 'GAT':'D', 'GAA':'E', 'GAG':'E', |
| 'GGA':'G', 'GGC':'G', 'GGG':'G', 'GGT':'G', |
| 'TCA':'S', 'TCC':'S', 'TCG':'S', 'TCT':'S', |
| 'TTC':'F', 'TTT':'F', 'TTA':'L', 'TTG':'L', |
| 'TAC':'Y', 'TAT':'Y', 'TAA':'*', 'TAG':'*', |
| 'TGC':'C', 'TGT':'C', 'TGA':'*', 'TGG':'W' |
| } |
|
|
| CODON_TOKENS = list(CODON_DICT.keys()) |
|
|
|
|
