| { |
| "metric_params": { |
| "analyzer_0": { |
| "quality_metric_params": { |
| "metric_names": [ |
| "amplitude_cutoff", |
| "amplitude_cv", |
| "amplitude_median", |
| "d_prime", |
| "drift", |
| "firing_range", |
| "firing_rate", |
| "isi_violation", |
| "isolation_distance", |
| "l_ratio", |
| "nearest_neighbor", |
| "num_spikes", |
| "presence_ratio", |
| "rp_violation", |
| "sd_ratio", |
| "silhouette", |
| "sliding_rp_violation", |
| "snr", |
| "synchrony" |
| ], |
| "peak_sign": null, |
| "seed": null, |
| "qm_params": { |
| "presence_ratio": { |
| "bin_duration_s": 60, |
| "mean_fr_ratio_thresh": 0.0 |
| }, |
| "snr": { |
| "peak_sign": "neg", |
| "peak_mode": "extremum" |
| }, |
| "isi_violation": { |
| "isi_threshold_ms": 1.5, |
| "min_isi_ms": 0 |
| }, |
| "rp_violation": { |
| "refractory_period_ms": 1.0, |
| "censored_period_ms": 0.0 |
| }, |
| "sliding_rp_violation": { |
| "min_spikes": 0, |
| "bin_size_ms": 0.25, |
| "window_size_s": 1, |
| "exclude_ref_period_below_ms": 0.5, |
| "max_ref_period_ms": 10, |
| "contamination_values": null |
| }, |
| "synchrony": { |
| "synchrony_sizes": [ |
| 2, |
| 4, |
| 8 |
| ] |
| }, |
| "firing_range": { |
| "bin_size_s": 5, |
| "percentiles": [ |
| 5, |
| 95 |
| ] |
| }, |
| "amplitude_cv": { |
| "average_num_spikes_per_bin": 50, |
| "percentiles": [ |
| 5, |
| 95 |
| ], |
| "min_num_bins": 10, |
| "amplitude_extension": "spike_amplitudes" |
| }, |
| "amplitude_cutoff": { |
| "peak_sign": "neg", |
| "num_histogram_bins": 100, |
| "histogram_smoothing_value": 3, |
| "amplitudes_bins_min_ratio": 5 |
| }, |
| "amplitude_median": { |
| "peak_sign": "neg" |
| }, |
| "drift": { |
| "interval_s": 60, |
| "min_spikes_per_interval": 100, |
| "direction": "y", |
| "min_num_bins": 2 |
| }, |
| "nearest_neighbor": { |
| "max_spikes": 10000, |
| "n_neighbors": 5 |
| }, |
| "nn_isolation": { |
| "max_spikes": 10000, |
| "min_spikes": 10, |
| "min_fr": 0.0, |
| "n_neighbors": 4, |
| "n_components": 10, |
| "radius_um": 100, |
| "peak_sign": "neg" |
| }, |
| "nn_noise_overlap": { |
| "max_spikes": 10000, |
| "min_spikes": 10, |
| "min_fr": 0.0, |
| "n_neighbors": 4, |
| "n_components": 10, |
| "radius_um": 100, |
| "peak_sign": "neg" |
| }, |
| "silhouette": { |
| "method": [ |
| "simplified" |
| ] |
| } |
| }, |
| "skip_pc_metrics": false |
| }, |
| "template_metric_params": { |
| "metric_names": [ |
| "half_width", |
| "num_negative_peaks", |
| "num_positive_peaks", |
| "peak_to_valley", |
| "peak_trough_ratio", |
| "recovery_slope", |
| "repolarization_slope" |
| ], |
| "sparsity": null, |
| "peak_sign": "neg", |
| "upsampling_factor": 10, |
| "metrics_kwargs": { |
| "recovery_window_ms": 0.7, |
| "peak_relative_threshold": 0.2, |
| "peak_width_ms": 0.1, |
| "depth_direction": "y", |
| "min_channels_for_velocity": 5, |
| "min_r2_velocity": 0.5, |
| "exp_peak_function": "ptp", |
| "min_r2_exp_decay": 0.5, |
| "spread_threshold": 0.2, |
| "spread_smooth_um": 20, |
| "column_range": null |
| } |
| } |
| } |
| }, |
| "spikeinterface_info": { |
| "version": "0.101.0rc0" |
| }, |
| "label_conversion": { |
| "accept": "accept", |
| "reject": "accept" |
| } |
| } |
