Instructions to use cimm-kzn/endr-bert with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use cimm-kzn/endr-bert with Transformers:
# pip install -U transformers accelerate # Load model directly from transformers import AutoModel model = AutoModel.from_pretrained("cimm-kzn/endr-bert", device_map="auto") - Notebooks
- Google Colab
- Kaggle
Migrate model card from transformers-repo
Browse filesRead announcement at https://discuss.huggingface.co/t/announcement-all-model-cards-will-be-migrated-to-hf-co-model-repos/2755
Original file history: https://github.com/huggingface/transformers/commits/master/model_cards/cimm-kzn/endr-bert/README.md
README.md
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---
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language:
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- ru
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- en
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---
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## EnDR-BERT
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EnDR-BERT - Multilingual, Cased, which pretrained on the english collection of consumer comments on drug administration from [2]. Pre-training was based on the [original BERT code](https://github.com/google-research/bert) provided by Google. In particular, Multi-BERT was for used for initialization and all the parameters are the same as in Multi-BERT. Training details are described in our paper. \
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link: https://yadi.sk/d/-PTn0xhk1PqvgQ
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## Citing & Authors
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If you find this repository helpful, feel free to cite our publication:
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[1] Tutubalina E, Alimova I, Miftahutdinov Z, et al. The Russian Drug Reaction Corpus and Neural Models for Drug Reactions and Effectiveness Detection in User Reviews.//Bioinformatics. - 2020.
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preprint: https://arxiv.org/abs/2004.03659
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```
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@article{10.1093/bioinformatics/btaa675,
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author = {Tutubalina, Elena and Alimova, Ilseyar and Miftahutdinov, Zulfat and Sakhovskiy, Andrey and Malykh, Valentin and Nikolenko, Sergey},
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title = "{The Russian Drug Reaction Corpus and Neural Models for Drug Reactions and Effectiveness Detection in User Reviews}",
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journal = {Bioinformatics},
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year = {2020},
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month = {07},
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issn = {1367-4803},
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doi = {10.1093/bioinformatics/btaa675},
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url = {https://doi.org/10.1093/bioinformatics/btaa675},
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note = {btaa675},
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eprint = {https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaa675/33539752/btaa675.pdf},
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}
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```
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[2] Tutubalina, EV and Miftahutdinov, Z Sh and Nugmanov, RI and Madzhidov, TI and Nikolenko, SI and Alimova, IS and Tropsha, AE Using semantic analysis of texts for the identification of drugs with similar therapeutic effects.//Russian Chemical Bulletin. – 2017. – Т. 66. – №. 11. – С. 2180-2189.
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[link to paper](https://www.researchgate.net/profile/Elena_Tutubalina/publication/323751823_Using_semantic_analysis_of_texts_for_the_identification_of_drugs_with_similar_therapeutic_effects/links/5bf7cfc3299bf1a0202cbc1f/Using-semantic-analysis-of-texts-for-the-identification-of-drugs-with-similar-therapeutic-effects.pdf)
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```
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@article{tutubalina2017using,
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title={Using semantic analysis of texts for the identification of drugs with similar therapeutic effects},
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author={Tutubalina, EV and Miftahutdinov, Z Sh and Nugmanov, RI and Madzhidov, TI and Nikolenko, SI and Alimova, IS and Tropsha, AE},
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journal={Russian Chemical Bulletin},
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volume={66},
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number={11},
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pages={2180--2189},
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year={2017},
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publisher={Springer}
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}
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```
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