Update doc

README.md

@@ -1,39 +1,39 @@
----
-license: mit
----
-
-# Models for MF-Design
-
-This repository hosts the pre-trained model checkpoints for the paper **"Repurposing AlphaFold3-like Protein Folding Models for Antibody Sequence and Structure Co-design" (MF-Design)**.
-
-The main code repository can be found at [MF-Design](https://github.com/yangnianzu0515/mfdesign).
-
-## Directory Structure
-
-The `./model` directory contains various trained model checkpoints.
-
-The following files are sourced from the [Boltz-1](https://github.com/jwohlwend/boltz) repository:
-* `boltz1.ckpt`
-* `boltz1_conf.ckpt`
-* `ccd.pkl`
-* `symmetry.pkl`
-
-We provide the following checkpoints for our MFDesign models:
-
-* **MFDesign-D**: Checkpoints for all four training stages are provided.
-* **MFDesign-C**: The checkpoint for the final stage is provided.
-
-For the final stage of both `MFDesign-D` and `MFDesign-C`, we also provide an additional checkpoint for models that were trained without epitope information.
-
-## Citation
-
-If you use MFDesign in your research, please cite our paper:
-
-```bibtex
-@article{mf_design_2025,
-  title={Repurposing AlphaFold3-like Protein Folding Models for Antibody Sequence and Structure Co-design},
-  author={Nianzu Yang and Songlin Jiang and Jian Ma and Huaijin Wu and Shuangjia Zheng and Wengong Jin and Junchi Yan},
-  journal={ICLR 2025 GEM Workshop},
-  year={2025},
-  url={[https://openreview.net/pdf/fa449e7c0c04e638dab5d8b500e85cbb30f29694.pdf](https://openreview.net/pdf/fa449e7c0c04e638dab5d8b500e85cbb30f29694.pdf)}
+---
+license: mit
+---
+
+# Models for MF-Design
+
+This repository hosts the pre-trained model checkpoints for the paper **"Repurposing AlphaFold3-like Protein Folding Models for Antibody Sequence and Structure Co-design" (MF-Design)**.
+
+The main code repository can be found at [MF-Design](https://github.com/yangnianzu0515/mfdesign).
+
+## Directory Structure
+
+The `./model` directory contains various trained model checkpoints.
+
+The following files are sourced from the [Boltz-1](https://github.com/jwohlwend/boltz) repository:
+* `boltz1.ckpt`
+* `boltz1_conf.ckpt`
+* `ccd.pkl`
+* `symmetry.pkl`
+
+We provide the following checkpoints for our MFDesign models:
+
+* **MFDesign-D**: Checkpoints for all four training stages are provided.
+* **MFDesign-C**: The checkpoint for the final stage is provided.
+
+For the final stage of both `MFDesign-D` and `MFDesign-C`, we also provide an additional checkpoint for models that were trained without epitope information.
+
+## Citation
+
+If you use MFDesign in your research, please cite our paper:
+
+```bibtex
+@article{mf_design_2025,
+  title={Repurposing AlphaFold3-like Protein Folding Models for Antibody Sequence and Structure Co-design},
+  author={Nianzu Yang and Songlin Jiang and Jian Ma and Huaijin Wu and Shuangjia Zheng and Wengong Jin and Junchi Yan},
+  journal={NeurIPS 2025},
+  year={2025},
+  url={[https://openreview.net/pdf?id=M96edY67nS)}
 }