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Geneformer / examples /tokenizing_scRNAseq_data.ipynb

Commit History

  1. Add instructions to convert gene annotations w/ Ensembl Biomart

    Christina Theodoris
    77eb432

  1. Add further explanation regarding input file format for transcriptome tokenizer

    Christina Theodoris
    c34ead6

  1. Update instructions in tokenizing example to clarify requirement for Ensembl ID

    Christina Theodoris
    d468697

  2. Update instructions in tokenizing example to clarify requirement for Ensembl ID

    Christina Theodoris
    e606e1c

  1. Add further explanation to tokenizer example script and updated tokenizer to match loompy raised error

    Christina Theodoris
    78dd83b

  1. Add example for tokenizing .loom dataset

    Christina Theodoris
    f89f796