Hugging Face's logo

ctheodoris
/
Geneformer

Fill-Mask
Transformers
Safetensors
bert
single-cell
genomics
Model card Files
xet
 Community
597
Geneformer

Commit History

  1. Fix bug with metadata when processing multiple .loom files

    davidjwen
    36a4b06

  1. Update token_dictionary.pkl

    ctheodoris
    1987df4

  2. Delete geneformer/token_dictionary.pkl

    ctheodoris
    870b99b

  1. Update README.md⁠

    ctheodoris
    5e1ff99

  1. Add data collator for gene classification and example for gene classification

    Christina Theodoris
    edacd12

  1. Add data collator for cell classification and example for cell classification

    Christina Theodoris
    088ea6e

  1. update model card with installation instructions

    ctheodoris
    f0de016

  1. Add alternative methods comparison examples

    Christina Theodoris
    277b470

  1. Update README.md⁠

    ctheodoris
    c33c308

  1. Add Geneformer trainer and pretraining example

    Christina Theodoris
    bcc03e8

  2. Add Geneformer tokenizer and updated model card

    Christina Theodoris
    5426788

  3. Add setup.py

    ctheodoris
    b73028f

  4. Add MANIFEST.in

    ctheodoris
    1163e5e

  1. update README.md

    Christina Theodoris
    1ff02e6

  1. create Geneformer model card

    Christina Theodoris
    453894a

  1. upload training args for Geneformer 6L-30M

    Christina Theodoris
    4cfe5a6

  2. upload Geneformer 6L-30M config

    Christina Theodoris
    c45a71b

  3. upload Geneformer 6L-30M

    Christina Theodoris
    3c8dcdc

  4. initial commit

    Christina Theodoris
    c6d4a49