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Geneformer / examples /extract_and_plot_cell_embeddings.ipynb

Commit History

  1. Add classifier module and examples

    Christina Theodoris
    9e9cca9

  1. Add option to output embs as tensor

    Christina Theodoris
    624349c

  1. Fixed error with perturbing individual genes and updated ways to specify cell_states_to_model (#146)⁠

    ctheodoris +1: davidjwen
    9169bfd

  1. Rename heatmap legend to be correct label

    Christina Theodoris
    badcca6

  2. Add function to extract and plot cell embeddings

    Christina Theodoris
    d154fee