Delete spurs_multi

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spurs_multi/.hydra/config.yaml +0 -115
spurs_multi/checkpoints/best.ckpt +0 -3
spurs_multi/config_tree.log +0 -118
spurs_multi/multi_additive_before_train_result_25.9.25.pt +0 -3
spurs_multi/multi_additive_result_25.9.25.pt +0 -3
spurs_multi/multi_result_25.9.25.pt +0 -3

spurs_multi/.hydra/config.yaml DELETED Viewed

@@ -1,115 +0,0 @@
-datamodule:
-  _target_: megascale_multi
-  batch_size: 1
-  num_workers: 8
-  pin_memory: true
-  alphabet:
-    name: esm
-    featurizer: megascale
-trainer:
-  _target_: pytorch_lightning.Trainer
-  gpus: auto
-  min_epochs: 1
-  max_epochs: 200
-  enable_progress_bar: true
-  log_every_n_steps: 10
-  resume_from_checkpoint: null
-  strategy: ddp_sharded_fbo
-  precision: 32
-  gradient_clip_val: 0.0
-  num_sanity_val_steps: 0
-  check_val_every_n_epoch: 1
-  reload_dataloaders_every_n_epochs: 100000
-  replace_sampler_ddp: false
-  max_steps: 200000
-name: megascale/spurs_multi
-model:
-  _target_: spurs_multi
-  encoder:
-    d_model: 128
-    n_enc_layers: 3
-    n_dec_layers: 3
-    tune: true
-    use_input_decoding_order: true
-  adapter_layer_indices:
-  - -3
-  mlp:
-    flat_dim: 128
-    input_dim: 256
-    hidden_dim: 1024
-    num_layers: 4
-    output_dim: 21
-    dropout: 0.1
-  multi:
-    flat_dim: 128
-    input_dim: 384
-    hidden_dim: 768
-    num_layers: 4
-    output_dim: 1
-    dropout: 0.1
-  dropout: 0.5
-  agg_type: concate
-  agg_dim: 128
-task:
-  _target_: stability/megascale
-  criterion:
-    _target_: spurs.modules.mseloss.MSELoss
-  optimizer:
-    type: adamw
-    _partial_: true
-    lr: 0.0001
-    betas:
-    - 0.9
-    - 0.98
-    weight_decay: 0.0001
-  lr_scheduler:
-    type: plateau
-    lr: ${train.lr}
-    factor: 0.2
-    mode: min
-    monitor: val/rho_avg_mse
-train:
-  seed: 49
-  lr: 0.001
-  monitor: val/rho_avg_spearman
-  mode: max
-  patience: 10
-optimized_metric: val/rho_avg_spearman
-experiment: mpnn
-callbacks:
-  model_summary:
-    _target_: pytorch_lightning.callbacks.RichModelSummary
-    max_depth: -1
-  model_checkpoint:
-    _target_: spurs.utils.callbacks.ModelCheckpoint
-    monitor: ${train.monitor}
-    mode: ${train.mode}
-    save_top_k: 1
-    save_last: true
-    verbose: true
-    dirpath: checkpoints
-    filename: step_{global_step}-${train.monitor}_{${train.monitor}:.2f}
-    auto_insert_metric_name: false
-  early_stopping:
-    _target_: pytorch_lightning.callbacks.EarlyStopping
-    monitor: ${train.monitor}
-    mode: ${train.mode}
-    patience: ${train.patience}
-    min_delta: 0
-    check_on_train_epoch_end: false
-logger:
-  tensorboard:
-    _target_: pytorch_lightning.loggers.tensorboard.TensorBoardLogger
-    save_dir: tensorboard/
-    name: null
-    version: ${name}
-    log_graph: false
-    default_hp_metric: true
-    prefix: ''
-paths:
-  root_dir: ${oc.env:PROJECT_ROOT}
-  data_dir: ${paths.root_dir}/data/
-  log_dir: ${paths.root_dir}/logs/${name}
-  ckpt_dir: ${paths.log_dir}/checkpoints
-  psnetdata: ${paths.root_dir}/PSNet/data

spurs_multi/checkpoints/best.ckpt DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:018081b900a77958f67355f0d323dfdc3e18d63f61c8764f0b268e7c1e32080c
-size 2697880281

spurs_multi/config_tree.log DELETED Viewed

@@ -1,118 +0,0 @@
-CONFIG
-├── datamodule
-│   └── _target_: megascale_multi
-│       batch_size: 1
-│       num_workers: 8
-│       pin_memory: true
-│       alphabet:
-│         name: esm
-│         featurizer: megascale
-│
-├── task
-│   └── _target_: stability/megascale
-│       criterion:
-│         _target_: spurs.modules.mseloss.MSELoss
-│       optimizer:
-│         type: adamw
-│         _partial_: true
-│         lr: 0.0001
-│         betas:
-│         - 0.9
-│         - 0.98
-│         weight_decay: 0.0001
-│       lr_scheduler:
-│         type: plateau
-│         lr: 0.001
-│         factor: 0.2
-│         mode: min
-│         monitor: val/rho_avg_mse
-│
-├── model
-│   └── _target_: spurs_multi
-│       encoder:
-│         d_model: 128
-│         n_enc_layers: 3
-│         n_dec_layers: 3
-│         tune: true
-│         use_input_decoding_order: true
-│       adapter_layer_indices:
-│       - -3
-│       mlp:
-│         flat_dim: 128
-│         input_dim: 256
-│         hidden_dim: 1024
-│         num_layers: 2
-│         output_dim: 21
-│         dropout: 0.1
-│       multi:
-│         flat_dim: 128
-│         input_dim: 384
-│         hidden_dim: 768
-│         num_layers: 4
-│         output_dim: 1
-│         dropout: 0.1
-│       dropout: 0.5
-│       agg_type: concate
-│       agg_dim: 128
-│
-├── callbacks
-│   └── model_summary:
-│         _target_: pytorch_lightning.callbacks.RichModelSummary
-│         max_depth: -1
-│       model_checkpoint:
-│         _target_: spurs.utils.callbacks.ModelCheckpoint
-│         monitor: val/rho_avg_spearman
-│         mode: max
-│         save_top_k: 1
-│         save_last: true
-│         verbose: true
-│         dirpath: checkpoints
-│         filename: step_{global_step}-val/rho_avg_spearman_{val/rho_avg_spearman:.2f}
-│         auto_insert_metric_name: false
-│       early_stopping:
-│         _target_: pytorch_lightning.callbacks.EarlyStopping
-│         monitor: val/rho_avg_spearman
-│         mode: max
-│         patience: 10
-│         min_delta: 0
-│         check_on_train_epoch_end: false
-│
-├── trainer
-│   └── _target_: pytorch_lightning.Trainer
-│       gpus: auto
-│       min_epochs: 1
-│       max_epochs: 10
-│       enable_progress_bar: true
-│       log_every_n_steps: 10
-│       resume_from_checkpoint: null
-│
-├── experiment_path
-│   └── /nethome/zli3161/DATA-nash/SPURS/data/checkpoints/spurs_multi
-├── ckpt_path
-│   └── best.ckpt
-├── data_split
-│   └── test
-├── mode
-│   └── predict
-├── name
-│   └── megascale/spurs_multi
-├── train
-│   └── seed: 49
-│       lr: 0.001
-│       monitor: val/rho_avg_spearman
-│       mode: max
-│       patience: 10
-│
-├── print_config
-│   └── True
-├── ignore_warnings
-│   └── True
-├── seed
-│   └── 42
-└── paths
-    └── root_dir: /work/ziang/SPURS
-        data_dir: /work/ziang/SPURS/data/
-        log_dir: /nethome/zli3161/DATA-nash/SPURS/data/checkpoints/spurs_multi
-        ckpt_dir: /nethome/zli3161/DATA-nash/SPURS/data/checkpoints/spurs_multi/checkpoints
-        psnetdata: /work/ziang/SPURS/PSNet/data

spurs_multi/multi_additive_before_train_result_25.9.25.pt DELETED Viewed

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spurs_multi/multi_additive_result_25.9.25.pt DELETED Viewed

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spurs_multi/multi_result_25.9.25.pt DELETED Viewed

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