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Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Comparative_Genomics_Statistics/Orthogroups_SpeciesOverlaps.tsv

@@ -0,0 +1,6 @@
+	GCF_002008305.4	GCF_003691675.1	GCF_005280335.1	GCF_020097155.1	GCF_023573625.1
+GCF_002008305.4	2100	1994	1928	1848	1988
+GCF_003691675.1	1994	2108	1924	1850	2017
+GCF_005280335.1	1928	1924	2110	1890	1920
+GCF_020097155.1	1848	1850	1890	2039	1875
+GCF_023573625.1	1988	2017	1920	1875	2100

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Comparative_Genomics_Statistics/Statistics_Overall.tsv

@@ -0,0 +1,53 @@
+Number of species	5
+Number of genes	11784
+Number of genes in orthogroups	11076
+Number of unassigned genes	708
+Percentage of genes in orthogroups	94.0
+Percentage of unassigned genes	6.0
+Number of orthogroups	2371
+Number of species-specific orthogroups	41
+Number of genes in species-specific orthogroups	98
+Percentage of genes in species-specific orthogroups	0.8
+Mean orthogroup size	4.7
+Median orthogroup size	5.0
+G50 (assigned genes)	5
+G50 (all genes)	5
+O50 (assigned genes)	1020
+O50 (all genes)	1090
+Number of orthogroups with all species present	1719
+Number of single-copy orthogroups	1572
+Date	2026-05-20
+Orthogroups file	Orthogroups.tsv
+Unassigned genes file	Orthogroups_UnassignedGenes.tsv
+Per-species statistics	Statistics_PerSpecies.tsv
+Overall statistics	Statistics_Overall.tsv
+Orthogroups shared between species	Orthogroups_SpeciesOverlaps.tsv
+
+Average number of genes per-species in orthogroup	Number of orthogroups	Percentage of orthogroups	Number of genes	Percentage of genes
+<1	591	24.9	1734	15.7
+'1	1763	74.4	9022	81.5
+'2	8	0.3	93	0.8
+'3	3	0.1	48	0.4
+'4	1	0.0	23	0.2
+'5	3	0.1	79	0.7
+'6	1	0.0	31	0.3
+'7	0	0.0	0	0.0
+'8	0	0.0	0	0.0
+'9	1	0.0	46	0.4
+'10	0	0.0	0	0.0
+11-15	0	0.0	0	0.0
+16-20	0	0.0	0	0.0
+21-50	0	0.0	0	0.0
+51-100	0	0.0	0	0.0
+101-150	0	0.0	0	0.0
+151-200	0	0.0	0	0.0
+201-500	0	0.0	0	0.0
+501-1000	0	0.0	0	0.0
+'1001+	0	0.0	0	0.0
+
+Number of species in orthogroup	Number of orthogroups
+1	41
+2	247
+3	129
+4	235
+5	1719

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Comparative_Genomics_Statistics/Statistics_PerSpecies.tsv

@@ -0,0 +1,100 @@
+	GCF_002008305.4	GCF_003691675.1	GCF_005280335.1	GCF_020097155.1	GCF_023573625.1
+Number of genes	2256	2262	2631	2436	2199
+Number of genes in orthogroups	2196	2206	2302	2210	2162
+Number of unassigned genes	60	56	329	226	37
+Percentage of genes in orthogroups	97.3	97.5	87.5	90.7	98.3
+Percentage of unassigned genes	2.7	2.5	12.5	9.3	1.7
+Number of orthogroups containing species	2100	2108	2110	2039	2100
+Percentage of orthogroups containing species	88.6	88.9	89.0	86.0	88.6
+Number of species-specific orthogroups	1	1	13	26	0
+Number of genes in species-specific orthogroups	2	5	30	61	0
+Percentage of genes in species-specific orthogroups	0.1	0.2	1.1	2.5	0.0
+
+
+Number of genes per-species in orthogroup	Number of orthogroups	Number of orthogroups	Number of orthogroups	Number of orthogroups	Number of orthogroups
+'0	271	263	261	332	271
+'1	2048	2060	1984	1925	2069
+'2	37	33	100	87	21
+'3	7	3	15	17	2
+'4	3	2	4	7	2
+'5	3	6	2	1	3
+'6	1	1	1	0	2
+'7	0	2	1	1	0
+'8	0	0	1	0	0
+'9	0	0	1	0	0
+'10	0	0	0	0	1
+11-15	0	1	0	0	0
+16-20	1	0	1	1	0
+21-50	0	0	0	0	0
+51-100	0	0	0	0	0
+101-150	0	0	0	0	0
+151-200	0	0	0	0	0
+201-500	0	0	0	0	0
+501-1000	0	0	0	0	0
+'1001+	0	0	0	0	0
+
+Number of genes per-species in orthogroup	Percentage of orthogroups	Percentage of orthogroups	Percentage of orthogroups	Percentage of orthogroups	Percentage of orthogroups
+'0	11.4	11.1	11.0	14.0	11.4
+'1	86.4	86.9	83.7	81.2	87.3
+'2	1.6	1.4	4.2	3.7	0.9
+'3	0.3	0.1	0.6	0.7	0.1
+'4	0.1	0.1	0.2	0.3	0.1
+'5	0.1	0.3	0.1	0.0	0.1
+'6	0.0	0.0	0.0	0.0	0.1
+'7	0.0	0.1	0.0	0.0	0.0
+'8	0.0	0.0	0.0	0.0	0.0
+'9	0.0	0.0	0.0	0.0	0.0
+'10	0.0	0.0	0.0	0.0	0.0
+11-15	0.0	0.0	0.0	0.0	0.0
+16-20	0.0	0.0	0.0	0.0	0.0
+21-50	0.0	0.0	0.0	0.0	0.0
+51-100	0.0	0.0	0.0	0.0	0.0
+101-150	0.0	0.0	0.0	0.0	0.0
+151-200	0.0	0.0	0.0	0.0	0.0
+201-500	0.0	0.0	0.0	0.0	0.0
+501-1000	0.0	0.0	0.0	0.0	0.0
+'1001+	0.0	0.0	0.0	0.0	0.0
+
+Number of genes per-species in orthogroup	Number of genes	Number of genes	Number of genes	Number of genes	Number of genes
+'0	0	0	0	0	0
+'1	2048	2060	1984	1925	2069
+'2	74	66	200	174	42
+'3	21	9	45	51	6
+'4	12	8	16	28	8
+'5	15	30	10	5	15
+'6	6	6	6	0	12
+'7	0	14	7	7	0
+'8	0	0	8	0	0
+'9	0	0	9	0	0
+'10	0	0	0	0	10
+11-15	0	13	0	0	0
+16-20	20	0	17	20	0
+21-50	0	0	0	0	0
+51-100	0	0	0	0	0
+101-150	0	0	0	0	0
+151-200	0	0	0	0	0
+201-500	0	0	0	0	0
+501-1000	0	0	0	0	0
+'1001+	0	0	0	0	0
+
+Number of genes per-species in orthogroup	Percentage of genes	Percentage of genes	Percentage of genes	Percentage of genes	Percentage of genes
+'0	0.0	0.0	0.0	0.0	0.0
+'1	90.8	91.1	75.4	79.0	94.1
+'2	3.3	2.9	7.6	7.1	1.9
+'3	0.9	0.4	1.7	2.1	0.3
+'4	0.5	0.4	0.6	1.1	0.4
+'5	0.7	1.3	0.4	0.2	0.7
+'6	0.3	0.3	0.2	0.0	0.5
+'7	0.0	0.6	0.3	0.3	0.0
+'8	0.0	0.0	0.3	0.0	0.0
+'9	0.0	0.0	0.3	0.0	0.0
+'10	0.0	0.0	0.0	0.0	0.5
+11-15	0.0	0.6	0.0	0.0	0.0
+16-20	0.9	0.0	0.6	0.8	0.0
+21-50	0.0	0.0	0.0	0.0	0.0
+51-100	0.0	0.0	0.0	0.0	0.0
+101-150	0.0	0.0	0.0	0.0	0.0
+151-200	0.0	0.0	0.0	0.0	0.0
+201-500	0.0	0.0	0.0	0.0	0.0
+501-1000	0.0	0.0	0.0	0.0	0.0
+'1001+	0.0	0.0	0.0	0.0	0.0

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000026.fa

@@ -0,0 +1,70 @@
+>NZ_CP042169.1_127
+MSTSPSGSRVAETGAATADRGQLHRGLSQRHIMFIALGTAVGTGLFYGSAGGIQAAGPGV
+ILSFLVAGAAVFLVMRALGEMTLREPVSGSFAAYASRYLGPFAGYVTGWTFVFELAVVIV
+ADTAAITTYMAFWFPGVPAWAWVAATILVVGLINFTHVGNFGEAEFWLTLVKVGAIVAMI
+FGGVILLFTGASTADGTQASLANLVDHGGFLPHGILGVLTALTIVTFSFGGIETLGVAAG
+EAKNPEKVLPKAINTVPIRILLFYVLTMAVIMALVPWNQVDGKASPFVQIFEGLGVPFAP
+HLLNFVVLTAAVSAINACIYASGRLLYAMAHDGQAPRAFTHTNRGGVPWLSVAVMLGVMV
+LGAVLITVDPNAFSLVAGVASFAVVLTWAMIFLSHRAMRRRVAEQGAEPSPFPMPLGGVG
+TYLGLAFVATVVITMATIPDSRQALIIGLVWVAVLTLAWFVTGTRTSAAAHDRTGTLPVV
+RTRQSHED*
+>NZ_CP033200.1_2097
+MSTSPSGSRVAETGAATADRGQLHRGLSQRHIMFIALGTAVGTGLFYGSAGGIQAAGPGV
+ILSFLVAGAAVFLVMRALGEMTLREPVSGSFAAYASRYLGPFAGYVTGWTFVFELAVVIV
+ADTAAITTYMAFWFPGVPAWAWVAATILVVGLINFTHVGNFGEAEFWLTLVKVGAIVAMI
+FGGVILLFTGASTADGTQASLANLVDHGGFLPHGILGVLTALTIVTFSFGGIETLGVAAG
+EAKNPEKVLPKAINTVPIRILLFYVLTMAVIMALVPWNQVDGKASPFVQIFEGLGVPFAP
+HLLNFVVLTAAVSAINACIYASGRLLYAMAHDGQAPRAFTHTNRGGVPWLSVAVMLGVMV
+LGAVLITVDPNAFSLVAGVASFAVVLTWAMIFLSHRAMRRRVAEQGAEPSPFPMPLGGVG
+TYLGLAFVATVVITMATIPDSRQALIIGLVWVAVLTLAWFVTGTRTSAAAHDRTGTLPVV
+RTRQSHED*
+>NZ_CP040019.1_242
+MSTSPSGSRVAEPGAATADRGQLHRGLSQRHIMFIALGTAVGTGLFYGSAGGIQAAGPGV
+ILSFLIAGAAVFLVMRALGEMTLREPVSGSFAAYASRYLGPFAGYVTGWTFVFELAVVIV
+ADTAAITAYMAFWFPEVPAWAWVAATILVVGLINFTHVGNFGEAEFWLTLVKVGAIVAMI
+FGGVILLFTGASTADGTQAGLANLVDHGGFLPHGILGVLTALTIVTFSFGGIETLGVAAG
+EAKNPEKVLPKAINTVPIRILLFYVLTMAVIMALVPWNQVDGKASPFVQIFEGLGVPFAP
+HLLNFVVLTAAVSAINACIYASGRLLYAMAHDGQAPRAFTHTNRGGVPWLSVAVMLGVMV
+LGAVLITVDPNAFSLVAGVASFAVVLTWAMIFLSHRAMRRRVAEQGAEPSPFPMPLGGVG
+TYLGLAFVATVVITMATIPDSRQALIIGLVWVAVLTLAWFVTGVRKAAAVHDRTGTLPVA
+SGEEAAASHR*
+>NZ_CP083691.1_177
+MNASPSGAHAVDHPRDDAAHAAQSQLHRGLSQRHIMFIALGTAIGTGLFYGSAGGIQTAG
+PGVILSFLIAGFAVYLVMRALGEMTLREPVSGSFAAYASRYLGPFAGYVTGWTFVFELAV
+VIVADTAAVTKYMAFWFPGVPAWAWVAATILVIGLVNLTHVGNFGEAEFWLTLIKIGAIV
+AMIFGGLILMFTGASFTDGTPAGLHNLVDHGGFLPHGFGGVLIALTIVTFSFGGIETLGV
+AAGEAKDPETALPKAINTVPVRILLFYVLTMVVIMSLVPWSAVDGKTSPFVQIFEGLGVP
+FAPHILNFVVLTAAISAINACIYASGRLLYAMAHDGQAPRAFTRTTANGVPWLTVAVMLG
+VMVLGAILITVNPDAFGLIAGVASFAVVLTWTMIFLSHRAMRARVKEAGAPPSVYPMPFG
+IVGTVLGLAFVATVVITMATIPESRQALLIGLAWVVALTAAWFVTGVRKTAALHDRTGQL
+PVVHRHH*
+>NZ_CP083691.1_178
+MQSTPAPEAPAQAQLQRGLNPRHITFIALGTAVGTGLFYGSAAGIQAAGPGVVLAFMLAG
+AAVYLVMRALGEMAVREPISGSFVAYASRYLGPFAGFLTGWTYVFELAVVIVADTTAVTV
+YMAFWYPDVPAWVWVAATMVVLGLINVTHVGSFGEAEFWFSLIKVLAIVGMIFGGVILMF
+SGASFQDGVTPGPHNLVEHGGFLPHGLMGVLTALTIVTFSFGGTETLGIAAGEAEDPASA
+LPRAVNTVPVRILFFYIGSMLVIMSLVPWTTVDGETSPFVQIFETLGVPFAPHLLNFVVL
+TAAVSAINACIFTNARLLHHMAHDGHAPRVFTAVTRGGVPWVTVVAMLGVMAAGAVFMSV
+KEDTFGIVAGVATFAVVFTWALILASHLGMRRALARHGQAPGAFPMPGGRVGAWLGLAFV
+AVVAGTMAFDQGGAVLGALGGPDALQTALAQPFVIGVLWLAVLAAAWAVPAVRRSAHRHD
+RHGTPPPLTWDV*
+>NZ_CP083691.1_2131
+MTPERRGPGTSPGGRYGVRVNEPPALPEPTGAAPPAPSPAGGATAAPSHGAADARLRRGL
+SMRHIQFIALGSAIGTGLFYGSATAIQLAGPAVILAYLVAGAAVFMVMRALGELAVRHPV
+PGSFGQYADRYLGPFAGFVTGWTFVFEMVVVAIADVTAFGVYMGFWFPDTPRWIWVTAVI
+LFIAAVNTRHVKVFGELEFWLSIVKVSAILAMVIGGVALLVMGVSLDAATPAGVQNLVDH
+GGFAPHGAAGVLAALSVVVFAFGGVETIGITAGEAQDPGRAIPRAVNAVPARILLFYVMT
+MVVIMSLVPWDRITGEASPFVEIFSTLGVPAAPAILNLVVITAAISAINADTFSAGRMLF
+GMAQQGRAPAVFASVSRGGVPWMAAVVMGLALAVGAVLNAVIPEDVFVVVASIATFATVW
+VWLMILLAHIAMRREVARRGLPASAFPVPLWPAASWAAVAFVLLVVGLLGWFSDTRVAMI
+VGLVWLVLLGAAYRLFLHGHGRSRPDLEEGAASSP*
+>NZ_CP097650.1_135
+MSTSPFGSRVAETGAATADRGQLHRGLSQRHIMFIALGTAVGTGLFYGSAGGIQAAGPGV
+ILSFLVAGAAVFLVMRALGEMTLREPVSGSFAAYASRYLGPFAGYVTGWTFVFELAVVIV
+ADTAAITTYMAFWFPGVPAWAWVAATILVVGLINFTHVGNFGEAEFWLTLVKVGAIVAMI
+FGGVILLFTGASTADGTQASLANLVDHGGFLPHGILGVLTALTIVTFSFGGIETLGVAAG
+EAKNPEKVLPKAINTVPIRILLFYVLTMAVIMALVPWNQVDGKASPFVQIFEGLGVPFAP
+HLLNFVVLTAAVSAINACIYASGRLLYAMAHDGQAPRAFTHTNRGGVPWLSVAVMLGVMV
+LGAVLITVDPNAFSLVAGVASFAVVLTWAMIFLSHRAMRRRVAEQGAEPSPFPMPLGGVG
+TYLGLAFVATVVITMATIPDSRQALIIGLVWVAVLTLAWFVTGTRTSAAAHDRTGTLPVV
+RTRQSHED*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000053.fa

@@ -0,0 +1,35 @@
+>NZ_CP042169.1_2190
+MDHKEILHQGLRRQRDALFAKLDGLPEREVRLPRTPTGTNLLGLLKHAATCELEYFGEVF
+GRPAGIPLPWDAPGVGEEDGADLFAAEDETLEDVLDYARRCFAHADATIEALVFDARGRV
+PWWPAHLAEVTLAQILSHVALDAARHAGHADILREGIDGQAGLRGPGDNLPGWDAERWAA
+HVRRLEGIARGAGPVR*
+>NZ_CP042169.1_2205
+MDHKQILHDGLRRQRAALLQKLEGLSERDARLPRTPTGTNLLGLVKHAAVVELEYFGETF
+DRPAEVQLPWAAAGQSEEDNVDMFAAEGESLEDVLEFARRCFAHADATITALGADAHGRV
+AWWPDDKAEVTLAQIIAHVALDEARHAGHADILREQIDGQAGLRAPGNNLPVWGADRWAA
+HVDRLTAIAEGSGGPGRN*
+>NZ_CP033200.1_1904
+MDHKEILHQGLRRQRDALFAKLDGLPEREVRLPRTPTGTNLLGLLKHAATCELECFGEVF
+GRPAGIPLPWDAPGVGEEDGADLFAAEDETLEDVLDYARRCFAHADATIEALVLDARGRV
+PWWPAHLAEVTLAQILSHVALDAARHAGHADILREGIDGQAGLRGPGDNLPGWDAERWAA
+HVRRLEGIARGAGPVR*
+>NZ_CP083691.1_402
+MDHKQILHDGLRRQRAALLHKLEGLSERDARLPRTPTGTNLLGLVKHAAVIELEYFGGTF
+GRPAEVQLPWAAAGQPEEDNVDMFAAEGESLEDVLEFARRCFVHADATITALGADAPGRV
+AWWPDDKAEVTLAQIIAHVALDEARHAGHADILREQIDGQVGLRSPGNNLPPWDADRWAA
+HVDRLTAIAEGSGGVGWN*
+>NZ_CP083691.1_406
+MGFLTPQAHGELAVLTTYALQQLAQMRTTVHGLTDEQAHSVPSASALNLTGLLLHTGEVA
+VYWTAAAASAPGEPVLPEDVNEDHSLDELVADGRPLAQVLERFDRCVEVARQNLAAVADL
+SAPVPVPDAPWFPADLKTWEARWALLHVTAEVARHVGHADLIRESIDGTGSYELNDLADA
+AAQG*
+>NZ_CP097650.1_2124
+MDHKEILHQGLRRQRDALFAKLDGLPEREVRLPRTPTGTNLLGLLKHAATCELEYFDEVF
+GRPAGIPLPWDAPGVGEEDGADLFAAEDETLEDVLDYARRCFAHADATIEALVFDARGRV
+PWWPAHLAEVTLAQILSHVALDAARHAGHADILREGIDGQAGLRGPGDNLPGWDAERWAA
+HVRRLEGIARGAGPVR*
+>NZ_CP097650.1_2138
+MDHKQILHDGLRRQRAALLQKLEGLSERNARLPRTPTGTNLLGLVKHAAVVELEYFGETF
+GRPAEVQLPWAAAGQPEEDNVDMFAAEGESLEDVLEFARRCFAHADATIAALDADAPGRV
+AWWPDDKAEVTLAQIIAHVALDEARHAGHADILREQIDGQAGLRAPGNNLPPWDADRWAA
+HVDRLTAIAEGSGGPGRN*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000066.fa

@@ -0,0 +1,33 @@
+>NZ_CP042169.1_168
+MTPPAALLLDLDGTLLDHGRAARIALGQAMQEAGLTDADHSSALLLWGELERIHFQEYLD
+GQTTFEEQRVRRVRAFLAHYGRTRLDRTSALAWFDTYRTAYERAWS*
+>NZ_CP042169.1_827
+MSRDASTTPAGGSAGAPAPPAWDAVLFDLDDTLLDLRSAQHAAFDATVRRQWAGAADVDP
+AVLAEATDAFASDAGGHYGRYVAGELTFEEQRLARVADALRALGVPEDAATPLDGLWTTD
+YEEVVRGHWALFPATADVLAEVRGTGRGVGIVTNNVEAYQRGKADALGLEWVEVLIGSDT
+AGAPKPDPAPFLAGCSRLGTDPGRTLMVGDSLRHDVEGARSAGLVPVWMSPDAPAHGGAE
+EPLWDEEHACWRMRAIGGLRTWLAA*
+>NZ_CP033200.1_558
+MSRGASTTPADGSAGAPAPPAWDAVLFDLDDTLLDLRSAQHAAFDATVRRQWAGAADVDP
+AVLAEATEAFASDAGGHFGRYVAGELTFEEQRLARVADALRALGVPEDAATPLDGLWTTD
+YEEVVRGHWALFPATADVLAEVRGTGRGVGIVTNNVEAYQRGKADALGLEWVEVLIGSDT
+AGAPKPDPAPFLAGCSRLGTDPGRTLMVGDSLRHDVEGARSAGLVPVWMSPDAPAHGGAE
+EPLWDEEHACWRMRAIGGLQTWLAA*
+>NZ_CP040019.1_2040
+MSGAPATGQATTTAAGGSPSSPAPAPPEWDAVLFDLDDTLLDLRAAQHAAFDATVRRQWA
+GAADVDPARMAEATEAFASDAAGHYERYVAGELTFEQQRLARAADALRALGAPEESATPL
+EALWTADYEDVVRGHWALFPATAEVLAQVRSSGRGVGIVTNNVEAYQRAKADALGLEWVD
+VLIGSDTAGAPKPDPAPFLAGCARLGAEPGRTLMVGDSLTHDVAGARAAGLVPVWMSPAA
+PARGAAEDPVWDPERGCWRLRAIGGLRAWLRR*
+>NZ_CP083691.1_1931
+MIRTPGTPSAPVVDGVLFDLDDTLLDLRGAQLPAFAETVRAQWPDAPPAEAGVFVRAADH
+FAADRSGHYQRYIAGELDFAGQRLARARDALAVLGAPGAVAEPDPALWTDEYEVRVRAHW
+ALFDDVVPTLATLRSSGVALGIVTNNVEAYQRAKADALGLEAITVLVGSDSAGAPKPDPA
+PFLEACRRMGTTPGRTACVGDSLSHDVRGARAAGLVPVWLRRGAGAADGGGEGRWDAAEG
+AWTIGGLGALAAWFPGSGADLASGREVL*
+>NZ_CP097650.1_785
+MSRGASTTPADGSAGAPAPPAWDAVLFDLDDTLLDLRSAQHAAFDATVRRQWAGAADVDP
+AVLAEATEAFASDAGGHFGRYVAGELTFEEQRLARVADALRALGVPEDAATPLDGLWTTD
+YEEVVRGHWALFPATADVLAEVRGTGRGVGIVTNNVEAYQRGKADALGLEWVEVLIGSDT
+AGAPKPDPAPFLAGCSRLGTDPGRTLMVGDSLRHDVEGARSAGLVPVWMSPDAPAHGGAE
+EPLWDEEHACWRMRAIGGLQTWLAA*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000072.fa

@@ -0,0 +1,54 @@
+>NZ_CP042169.1_228
+MALSVLDLFSIGIGPSSSHTVGPMRAARRFTDSMGQHGVLERTARVHAELFGSLAATGVG
+HGSDTAVLLGLAGQDPETIDPDACTGLVAEIVTGGRLPLDGRHEIAFDRQADLTLHMRES
+LPGHPNGMRLTAYDDAGEQLHTRDYYSVGGGFVVTSDELEAELDATKDVNRTDDGDTGEP
+YPFSTGAELAARCREAGLSIAELMLANEATRHDLDELRTQLLAIWAVMEECVHNGVTRTE
+PILPGGLQVRRRAPALREHLLQTTDRTDPMWAMEWVNLFALAVNEENASGGRIVTAPTNG
+AAGIIPAVMLYYMRFVLPEGATQQERDDKVVEFLLTAAAIGILYKRNASISGAEVGCQGE
+VGSACSMAAGALCAVLGGTVDQVENAAEIGIEHNLGLTCDPVGGLVQVPCIERNAIASVK
+AINAARLALLGDGSHRVTLDQAITTMRDTGADMKSKYKETSRGGLAVNVIEC*
+>NZ_CP033200.1_91
+MALSVVDLFSVGIGPSSSHTVGPMRAGRRFALGLVERGLVDATERIHVQLFGSLSATGHG
+HGSDRAVLLGLEGEDPETVDTDRANARVESMKAERRLALAAGAEQGGKDLDFDPDADLVM
+HRRRSLPYHPNGMSFTAYDGSGEVVVERVYYSVGGGFVVDDEAAGADRVVEDATEPPLPF
+SSGRELLNHCDREGISIPELMRRNEEAFRPWEAARAALLNTWRVMQECVEAGCEATGTLP
+GGLKVPRRAALLKEQLEVSAPRDGSAPPRDGGAPDALGAMEWVNLYALAVNEQNASGGRI
+VTAPTNGAAGIIPAVLHYWRDFLAREMTAEHIEDGVVDFLLTAAAIGILIKENASISGAE
+MGCQGEVGSACSMAAAGLCQLLGGTPQQVENAAEVGIEHNLGLTCDPVGGLVQIPCIERN
+AIASVKAINAARLCRRGDGRHTVSLDQAIKTMRETGQDMKVKYKETSRGGLAVNVIEC*
+>NZ_CP033200.1_2197
+MALSVLDLFSIGIGPSSSHTVGPMRAARRFTDSMGQHGVLERTARVHAELFGSLAATGVG
+HGSDTAVLLGLAGQDPETIDPDACTGLVEEIVTGGRLPLDGRHEIAFDRQGDLTLHMRES
+LPGHPNGMRLTAYDDAGEQLHTRDYYSVGGGFVVTSDELEAELDATKDVNRTDDGDTGEP
+YPFSTGAELAARCHEAGLSIAELMLANEATRHDLDELRTRLLAIWAVMEECVHNGVSRTE
+PILPGGLQVRRRAPALREHLLQTTDRTDPMWAMEWVNLFALAVNEENASGGRIVTAPTNG
+AAGIIPAVMLYYMRFVLPEGATQQERDDKVVEFLLTAAAIGILYKRNASISGAEVGCQGE
+VGSACSMAAGALCAVLGGTVDQVENAAEIGIEHNLGLTCDPVGGLVQVPCIERNAIASVK
+AINAARLALLGDGSHRVTLDQAIKTMRDTGADMKSKYKETSRGGLAVNVIEC*
+>NZ_CP040019.1_127
+MALSVLDLFSIGIGPSSSHTVGPMRAARRFTQSMDQHGVLERTARVEAELFGSLAATGIG
+HGSDTAVLLGLAGQDPETIDPDACVGLVDEILQGGRMPLDGRHEIAFDRQKDMTLHMRRT
+LPGHPNGMRLTAFDADGEQLHTRDYYSVGGGFVVTSDELEAELDESRDVSRHDDGEGGEP
+YPFATGAELAGRCRTNGLSIAELMLANEATRHDLGELRTQLLAIWDVMQECVHNGVTRTE
+PILPGGLKVRRRAPALRAHLLETTDRTDPMWAMEWVNLFALAVNEENASGGRIVTAPTNG
+AAGIIPAVLHYYMRFVLPQDATQQERDDKVVEFLLTAAAIGILYKRNASISGAEVGCQGE
+VGSACSMAAGALCAVLGGTVDQVENAAEIGIEHNLGLTCDPVGGLVQVPCIERNAIASVK
+AINAARLALLGDGSHRVTLDQAIKTMRDTGADMKSKYKETSRGGLAVNVIEC*
+>NZ_CP083691.1_92
+MALSILDLFSIGIGPSSSHTVGPMRAARRFTYALERDGLVERTARVKGELFGSLSATGVG
+HGSDMAVILGLCGNDPETIDPEAAAPQVQACVEGGTLPLDGTHEIPFDRPKDLVLHMRRS
+LPGHPNGMRLTAFDADGAELLTRDYYSVGGGFVVTGEELEAELDETRDVSRHGEEPEPHP
+FSTGADLIAQCEIHGLSIADVVRANEAARGDLADVEAKVLEIWDVMQECVAHGIHRTEPI
+LPGGLKVKRRAPGLHAQLLEKGTDGAEKDPMWAMEWVNLFALAVNEENASFGRIVTAPTN
+GAAGIIPAVLHYYDRFVLPPGTPAEERRAKILDFLFTAAAIGILFKRNASISGAEVGCQG
+EVGSACSMAAGALCAVLGGTPLQVENAAEIGIEHNLGLTCDPVGGLVQVPCIERNAIASV
+KAINAARLALVGDGDHRVTLDQAIQTMRETGADMKSKYKETSRGGLAVNVIEC*
+>NZ_CP097650.1_229
+MALSVLDLFSIGIGPSSSHTVGPMRAARRFTDSMGQHGVLERTARVHAELFGSLAATGVG
+HGSDTAVLLGLAGQDPETIDPDACTGLVEEIVTGGRLPLDGRHEIAFDRQGDLTLHMRES
+LPGHPNGMRLTAYDDAGEQLHTRDYYSVGGGFVVTSDELEAELDATKDVNRTDDGDTGEP
+YPFSTGAELAARCHEAGLSIAELMLANEATRHDLDELRTRLLAIWAVMEECVHNGVTRTE
+PILPGGLQVRRRAPALREHLLQTTDRTDPMWAMEWVNLFALAVNEENASGGRIVTAPTNG
+AAGIIPAVMLYYMRFVLPKGATQQERDDKVVEFLLTAAAIGILYKRNASISGAEVGCQGE
+VGSACSMAAGALCAVLGGTVDQVENAAEIGIEHNLGLTCDPVGGLVQVPCIERNAIASVK
+AINAARLALLGDGSHRVTLDQAIKTMRDTGADMKSKYKETSRGGLAVNVIEC*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000090.fa

@@ -0,0 +1,48 @@
+>NZ_CP042169.1_487
+MIPEAARTTPAPLTLWVVPVADLGGVARHVLDVARVGLPGLRLAVLCPEGPLAERLREQG
+AAVFTGDVGPDAGLAASVRTLRTAVRTLRPAAVHTHLAYADLAAFAALGPGRARQRAGAP
+ALLSTEHGIAPDDGLYNRAAAARVKNAAHRARLRGTDLVIAVAQSTADVLRRKWGAGAPI
+TVVRNGVDVPAVRAAAAGQRRTPGEGLRILSLSRLAPEKNLDRLIAALPALLERDPGTRL
+TLAGAGPLEGELRAQAEALGVAEAVDLPGFVEPWETMAEHDVLVQLSAWENLSYTLLDAA
+AAGLPAVATDVGGNGEILPPERLVHETTPAAIADAVVRAAADGPGEVRVGDVETMARATA
+EATLEVLGRRVGKVGTR*
+>NZ_CP033200.1_216
+MIPEDATTTPAPLTLWVVPVADLGGVARHVLDVARVGLPGLRLAVLCPEGPLAERLREQG
+AAVFTGDVGPDAGLAASVRTLRTAVRTLCPAAVHTHLAYADLAAFTALGAGRALRRAGAP
+ALLSTEHGIAPDDGLYNRAAAARVKNAAHRARLRGTDLVIAVAQSTADVLRRKWGAGAPL
+TVVRNGVDVPAVRAAAAGRRRAPGEGLRILSLSRLAPEKNLDRLIAALPALLERDPGTRV
+TLAGSGPLEGQLRAQAEDLGVADAVHLPGFVEPWGTMAEHDVLVQLSAWENLSYTLLDAA
+AAGLPAVATDVGGNGEILPPERLVRETTPEAIADAVVRAAAEGPGEVRVGDVETMARATA
+EATLEVLGRRVGKGGHR*
+>NZ_CP040019.1_1196
+MTRRLLLFANSFPYGKQEPYLMRECHYLDAFDEVYIFSLSIRKHQRDHRRDLPLERVTVV
+PIPFKSPLFYAAVSPRALVSRAFVTELRQLLRDRRFTVARAVQALSQFSRAEHEASVIGR
+FLRDNITPSPSDETVFYAYRFLYQPYLMSRLAAKFSSSRLIGRAHGIDLFEERQSTDYLP
+GRAINLGALDELHSVSRAGAEYLRARHPEFVEKIKVSYLGTEDHGVRPPRSSSQVLRLVS
+CSEVAPVKRLELLVEALREVSDSIQVEWSHYGEGPDMDRVRAMASTLPGHVSATFHGWTR
+NDEILEAYRSGRHDVFINVSSSEGLPVSIMESSSCGLPTIATDVGGTGEIVSDGVNGRLI
+SANPMPREIAAAVEEFARMAPEAFARRSAAARETWSTHFDSDRNYRQFVAKMLS*
+>NZ_CP040019.1_2395
+MTPEAATTTPAPLTLWVVPVADLGGVARHVLDVAAHGLPGLRLVVLCPEGALAERLREQG
+AAVFTGDVGPDAGLAASVRTLRTAVRTLRPAAVHTHLAYADLAAFTAFGPGRARRRAGAP
+ALVSTEHGIAPDDGLYNRAAAARVKNAAHRARLRGTDLVIAVAQSTADVLRRKWGTGAPI
+TVVRNGVDVSAVRAAAAGQRRAPGEGLRILSLSRLAPEKNLDRLIAALPALLERDPGTRL
+TLAGVGPLEGQLRAQAEALGVADAVDLPGFVEPWGAMAEHDVLVQLSAWENLSYTLLDAA
+AAGLPAVATDVGGNGEILPPERLVHETTPAAIADAVMRATVEGPGEVRVGDVETMARATA
+EATLEVLGRRAGKTSG*
+>NZ_CP083691.1_2275
+MIPEAATTTPAPLTLWVVPVADLGGVARHVLDVARVGLPGLRLAVLCPEGPLAERLREQG
+AAVFTGDVGPDAGLAASVRTLRTAVRTLRPAAVHTHLAYADLAAFTALGPGRARRRAGAP
+ALLSTEHGIAPDDGLYNRAAAARVKNAAHRARLRGTDLVIAVAQSTADVLRRKWGAGAPL
+TVVRNGVDVSAVRAAAAGQRRAPGEGLRILSLSRLAPEKGLDRLIAALPALRERDPGTRL
+TLAGSGPLEGQLRAQAEDLGVADAVDLPGFVEPWETMAEHDVLVQLSAWENLSYTLLDAA
+AAGLPAVATDVGGNGEILPPERLVHETTPAAIADAVTRAAAEGPGEVRVDDVEGMAEATA
+RAERDVVETQDARRRKTR*
+>NZ_CP097650.1_486
+MIPEAARTALAPLTLWVVPVADLGGVARHVLDVARVGLPGLRLAVLCPEGPLAERLREQG
+AAVFTGDVGPDAGLAASVRTLRTAVRTLRPAAVHTHLAYADLAAFAALGPGRARRRTSAP
+ALLSTEHGIAPDDGLYNRAAAARVKNAAHRARLRGTDLVIAVAQSTADVLRRKWGAGAPI
+TVVRNGVDVPAVRAAAAGQRRTPGEGLRILSLSRLAPEKNLDRLIAALPALLERDPGTRL
+TLAGSGPLEGQLRAQAEALGVAEAVDLPGFVEPWETMAEHDVLAQLSAWENLSYTLLDAA
+AAGLPAVATDVGGNGEILPPERLVRETTPAAIADAVVRAAADGPGEVLVGDVETMARATA
+EATLEVLGRRVGKAGTR*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000112.fa

@@ -0,0 +1,31 @@
+>NZ_CP042169.1_932
+MTEHSAAPVLRFVDDRAVRDLEQLATRARRVADTGMRLHVVPEAGRSRTPMLAQWVSVLQ
+PAGLGDGVPVVLGLRTVPLATADGVADLDAVVALGSVTERTARMRGQDPVDLAFAVPPGR
+EHVTWTALTPPRGGWTPVAEVADEELTEVATRGADAVWDALPENPGEALVRKIRAQMWGP
+LLGGDALQFPAGMAFGAHALGFLRPGGRARLSTAGPWTRLDTPGGFVLGRPAMAV*
+>NZ_CP033200.1_655
+MTEHSAAAPVLRFVDDRAVRDLEQLATRARRVADTGMRLHVVPEAGRSRTPMLAQWVSVL
+QPAGLGDGVPVVLGLRTVPLATADGVADLDAVVALGSVTERTARMRGQDPVDLAFAVPPG
+REHVTWTALTPPRGGWTPVAEVADEELAEVATRGADAVRDALPENPGEALVRKVRAQMWG
+PLLGGEALQFPAGMAFGAHALGFLRPGGRARLSTAGPWTRLDTPGGFVLGRPAMAV*
+>NZ_CP040019.1_1887
+MTEPSAAPVLRFADERAVRDLEQFATRARRVSDTGMRLHVVPAAGPSRTPMLAQWVSVLQ
+PAGLGDEVPVVLGLRTVPLATAEMAADLDAVVALGAVTERTARMRSRQPVDLDFSVPPGR
+EQVTWTALTPPRSGWTPAAEVADEELADVAERGVAAVRETLPENPGEAMVRKVRAQMWGP
+LLGGDALGFPAGMAFGAHALGFLQPGGRARLSTAGPWTRLDTPGGFVLGRPAMAV*
+>NZ_CP083691.1_692
+MPARLILADAPPARDALTFAQRAAQAGAHGVRLQAAAALTPRGPLDRTPTILVLRTLRSD
+PELQCDVTVDTLTATADPLTLALPETALAPAWTSVEPPQHGWRLIADVTSLTLMRSARAG
+IEAVAQALPDKPGDDVVRKIRGTVWGTPDTALASLPQGVAFAAYVFGFLSRGNGATISTA
+GRWTRLTLPTGHVLLRGPVASGLTPIRRTRPRVSKSVTSIE*
+>NZ_CP083691.1_1833
+MPDQPSSRRDARDAARAAVPVLRLTDERAVRDLDQFATRARRVADTGMRLHVVPEAGPRR
+TPMLAQWVSVLQPHGLGDGVPVVLGLRTVGLTSADAVEDLDAVVPLGAVTERTARMLGGT
+PVALDLPVPPGRERVTWTALTPPRAGWTVRAEVPDDELAEVAVKGAEAIRDALPQDPGEA
+MVRQVRAQMWGPRLGGEIGFPAGMAFGAHALGFLRPGGRARLSTAGPWVRLDTPGGFVLG
+RSAVGV*
+>NZ_CP097650.1_877
+MTEHSAAAPVLRFVDDRAVRDLEQLATRARRVADTGMRLHVVPEAGRSRTPMLAQWVSVL
+QPAGLGDGVPVVLGLRTVPLATADGVADLDAVVALGSVTERTARMRGQDPVDLAFAVPPG
+REHVTWTALTPPRGGWTPVAEVADEELAEVATRGADAVRDALPENPGEALVRKIRAQMWG
+PLLGGDALQFPAGMAFGAHALGFLRPGGRARLSTAGPWTRLDAPGGFVLGRPAMAV*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000124.fa

@@ -0,0 +1,36 @@
+>NZ_CP042169.1_1110
+MGEVGTREVRLERIEDLADPRLAPYTTMTDAALRRRVDAEHGVFLAESSQVVRRALDAGH
+TPRSFLLGDRYRGSFADVLAAHPDVPVFTGPDDVLEALTGFHLHRGALAAMDRPAPRPLA
+DVLAGARRVLIAEDLVDHTNLGAVVRSAVALGWDALLLTPQAADPLYRRAIRVSMGTVFR
+LPWARLPGPVAQSLPALRAAGFAVAALEVTERAVGLDSARIEPLRTAERLALVLGQEGPG
+VRPETLAQTDADVVIPMPAGVDSLNVAAAAAVALWELRAR*
+>NZ_CP033200.1_839
+MGEGGAREVRLERIEDLADPRLAPYTTMTDAALRRRVDAEHGVFLAESSQVVRRALDAGH
+TPRSFLLGDRYRGSFADVLAAHPDVPVFTGPDDVLEALTGFHLHRGALAAMDRPAPRPLA
+DVLAGARRVLIAEDLVDHTNLGAVVRSAVALGWDALLLTPQAADPLYRRAIRVSMGTVFR
+LPWARLPGPVAQSLPALRAAGFAVAALEVTERAVGLDSAWIEPLRTAERLALVLGQEGPG
+VRPETLAQTDADVVIPMPAGVDSLNVAAAAAVALWELRAR*
+>NZ_CP040019.1_1713
+MAEPAATAEPDGREVRLARAEDLADPRLVPYTTLTDAALRRRVDAEHGVFLAESSQVVRR
+ALAAGHTPRSFLLGDRYRGSFADVLAAHPDVPVFTGPDDVLEALTGFHLHRGALAAMDRP
+APRPLADVLAGARRVLIAEDLVDHTNLGAVVRSAVALGWDALLLTPQAADPLYRRAIRVS
+MGTVFRLPWARLEGPVAEAVPALREAGFAVAALEVTERAVGLDSPELEPLRSADRLALVL
+GQEGPGVRTETLEHTDADVVIPMPDGVDSLNVAAAAAVALWELRAR*
+>NZ_CP083691.1_529
+MSSESPAQPASADQPAEAPAGVIVDPKDARLRKVRELLKGKNKASRAIIVDDEENLLAAL
+AAGVELFTVFHGEDAELPAALAAVLPADQDVQVVSTHAAKELFGVERRSRVFALARRPKP
+LTVAEVLEHPGDVLVLDGVKLMGNIGAITRSARALGAAGLVLVDADLASVTDRRLIRASR
+GMVFSLPVALASADDVAAQLAEAGVPLVSLDLGSEKALDSVAEIPGRVALLLGSEKHGPS
+ARLAETAEHTVSITIHPEVESLNVSVSAALALYERRASNPLPQA*
+>NZ_CP083691.1_1605
+MPDDGAPAPFPGEVRLQSAADLADPRLAPYTTLTDAALRRDVDAAHGVFLAESSPVVRRA
+LDAGHAPRSFLLGDRYRETFADVIAAHPGVPVFTGPDEVLTALTGFHLHRGALAAMDRPA
+PRSVAEALDGAHRVLIAEDLVDHTNLGAVVRSAVALGWDALLLTPRAADPLYRRAIRVSM
+GTVFRLPWARADGPLEEALPALRAAGFATAALEVTDRAVGLDSPELEPVRTAERLALVLG
+QEGPGVRPETLAAVDAHVVIPMPAGVDSLNVAAAAAVALWELRPRDTPAA*
+>NZ_CP097650.1_1059
+MGEGGAREVRLERIEDLADPRLAPYTTMTDAALRRRVDAEHGVFLAESSQVVRRALDAGH
+TPRSFLLGDRYRGSFADVLAAHPDVPVFTGPDDVLEALTGFHLHRGALAAMDRPAPRPLA
+DVLAGARRVLIAEDLVDHTNLGAVVRSAVALGWDALLLTPQAADPLYRRAIRVSMGTVFR
+LPWARLPGPVAQSLPALRAAGFAVAALEVTERAVGLDSAWIEPLRTAERLALVLGQEGPG
+VRPETLAQTDADVVIPMPAGVDSLNVAAAAAVALWELRAR*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000157.fa

@@ -0,0 +1,36 @@
+>NZ_CP042169.1_1962
+MTDQQHTPDTVPSSVPAVVGVLGGGRMGGGIAHAFLVSGSSEVVVVERDPQSAEAAKERI
+EADLAASLERGKIDGDLDEWAQRLTVSVDRADFARCDLVVEAVFEDMQVKIDALTDVEAH
+LREDAWLASNTSSLSIGEIATHLQRPERFCGLHYFNPVPASKLVEVVIGEQTGAELQALS
+TEWVRGLGKTPVVVKDAPGFASSRLGVAIALEAIRMVEEGVASPEDIDAAMVLGYKFPVG
+PLALTDIVGLDVRLGIAEYLESQLGERFAPPQLMRDMVARGELGRKSGKGFFDYR*
+>NZ_CP033200.1_84
+MGQTQKVAVIGAGAMGSQIAMLAAMAGCQTTMVDVDQERLDAARDQVLQTAQRQAERGRL
+EADAVEQAAARLTTEPDLAAAVAEADVVVEAIIEDLEAKRDLFAQLGEHTRPDTILATNS
+SSIVSSRLAQIPHPERVCNMHFFNPALVMRLVEVVGGDHTSQKTIETVKALAERMGKTPV
+VVRQEIFGFIANRIVAAIFDEAISLYEQGIASAEDIDTAVTHGLGHPIGPFALLDLTGID
+VNVGIKRLEAQETGDPSRGPSQTLLDLMAQGRLGRKTGHGFYEYGDR*
+>NZ_CP033200.1_1683
+MTDQQHTPDTAPSSVPAVVGVLGGGRMGGGIAHAFLVSGSSEVVVVERDPRSAEAAQERV
+ESDLAASLDRGKIDGDLDEWAQRLTVTVDRADFARCDLVVEAVFEDMQVKIEALTDVEAH
+LREDAWLASNTSSLSIDEIATHLQRPERFCGLHYFNPVPASKLVEVVIGEQTGAELQALS
+TEWVRGLGKTPVVVKNAPGFASSRLGVAIALEAIRMVEEGVASPEDIDAAMVLGYKFPVG
+PLALTDIVGLDVRLGIAEYLESQLGERFAPPQLMRDMVARGELGRKSGKGFFDYR*
+>NZ_CP040019.1_787
+MTETPDTSRASVPAVVGVLGGGRMGGGIAHAFLTSGSSEVVVVERDPQSAEAAKERIESD
+LAASLERGKLDGDLDVWAERLTVSVDRADFARCDLVVEAVFEDMQVKIDALTDVESHLRE
+DAWLATNTSSLSVDEIATHLRRPERFCGLHYFNPVPASKLVEVVIGAQTGDELKALTTEW
+VRGLGKTPVVVKDAPGFASSRLGVAIALEAIRMVEEGVASPEDIDAAMVLGYKFPVGPLA
+LTDIVGLDVRLGIAEYLESQLGERFAPPQLMRDMVARGELGRKSGKGFFDYSKG*
+>NZ_CP083691.1_745
+MTENQQTTGSVPSIVGVLGGGRMGGGIAHAFLVSGSSEVVVVERDPQSAEAAQERIVADL
+AASLERGKIDGDLNVWAQRLTVSVDRTDFARCDLVVEAVFEDMQVKIEALTDVEAHLRED
+AWLASNTSSLSIDEIATHLQRPERFCGLHYFNPVPASKLVEVVIGEQTGAELQALSTEWV
+RGLGKTPVVVKDAPGFASSRLGVAIALEAIRMVEEGVASPEDIDAAMVLGYKFPVGPLAL
+TDIVGLDVRLGIAEYLESQLGERFAPPQLMRDMVARGELGRKSGKGFFDYR*
+>NZ_CP097650.1_1900
+MTDQQRTPDTAPSSVPAVVGVLGGGRMGGGIAHAFLVSGSSEVVVVERDPQSAQAAKERI
+EADLAASLERGKIDGDLDEWAQRLTVSVDRADFARCDLVVEAVFEDMQVKIEALTDVEAH
+LREDAWLASNTSSLSIDEIASHLQRPERFCGLHYFNPVPASKLVEVVIGEQTGAELQALS
+TEWVRGLGKTPVVVKDAPGFASSRLGVAIALEAIRMVEEGVASPEDIDAAMVLGYKFPVG
+PLALTDIVGLDVRLGIAEYLESQLGERFAPPQLMRDMVARGELGRKSGKGFFDYR*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000204.fa

@@ -0,0 +1,25 @@
+>NZ_CP042169.1_43
+MSERTTYLLIDGENIDATLGTSILQRRPQPDERPRWKRLLGYLEDRWDQPVKGLFFLAID
+GEIPIPFVQALTALGFQPIMLRGEGKVVDIGIQRTAEALLGREDDVVLVSHDADFAPQLT
+DLAATPGRRTGIMGFEEFLSHELRRIPGVEFFDLEHAVGAFDSSLPRLRVIDVEAFDPYE
+FL*
+>NZ_CP033200.1_2012
+MSERTTYLLIDGENIDATLGTSILQRRPQPDERPRWKRLLGYLEDRWDQPVKGLFFLAID
+GEIPIPFVQALTALGFQPIMLRGEGKVVDIGIQRTAEALLGREDDVVLVSHDADFAPQLT
+DLAATPGRRTGIMGFEEFLSHELRRIPGVEFFDLEHAVGAFDSSLPRLRVIDVEAFDPYE
+FL*
+>NZ_CP040019.1_336
+MGRRADAPAGPGRAVVVPTTTSSPAPASAPVHTPAPAPATSSAPAGSLGQVSESTTYLLV
+DGENIDATLGTSILQRRPQPDERPRWNRLLSFMGEHWDQPVKGLFFLAIDGDIPVPFVQA
+LTAIGYKPIMLRGAGKVVDIGIQKTMEALQEREDDVVLVSHDADFAPQLTDLAATPDRRT
+AIIGFEEFLSHELRRIPDVEFFDLEYGVGAFDTPLRRLRVIDIDEFDPLEFL*
+>NZ_CP083691.1_281
+MSRRADLPTGPATAVPAAPAAPVSPTAEDRSAATPADTLDTMSARTTYLLVDGENLDATL
+GMSVLNRRPNPEERPRWNRVLRHVERAWGQEVRPLFFLAVDEDGDIPFGFVQALTTMGYQ
+PILLRGAGKVVDIGIQRMAEALIGRDADVVLASHDADFAPQMLDLAAHGHKIAVMGFDEF
+MSAELRAVNGMEVWDLEHDVAAFDVPLPRLRVIDIDDFDPRDFL*
+>NZ_CP097650.1_38
+MSERTTYLLIDGENIDATLGTSILQRRPQPDERPRWKRLLGYLEDRWDQPVKGLFFLAID
+GEIPIPFVQALTALGFQPIMLRGEGKVVDIGIQRTAEALLGREDDVILVSHDADFAPQLT
+DLAATPGRRTGIMGFEEFLSHELRRIPGVEFFDLEHAVGAFDSSLPRLRVIDVEAFDPNE
+FL*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000205.fa

@@ -0,0 +1,40 @@
+>NZ_CP042169.1_44
+MPAPSSHAPAATHTARGRLVWVDVARGLALVAMMVAHTAPAGGPGGVLHLSEHLTAPLFA
+ALVGVGARLEAEWLGRGRAVPRALVRAAALCGAAWLTGHFGAAVVNVLAHLAVLTVIMAL
+LAALPLAAHLVLAVLAGGGGLLLAATPTADVVDRLVPLAQALGLSRATLTPYVSAFLTDG
+PYRLPLFLTWALLGAVLVRTVHGTTTAAPARSARLTGLAWAAGGIALAGVVLALSRTQTG
+AAPVPYTATPAEALLDTGLVLTVLGACAALAPRRAGLLAVPGAMTLSVYVAHLWYLGWVR
+RLGPGPWRSATGTDDTWFNLAVLVAGALLLPLLWRAVVRIGPFRAGPLEGVVRLLTAPFD
+RAR*
+>NZ_CP033200.1_2013
+MPAPSSHAPAATHTARGRLVWVDVARGLALVAMMVAHTAPAGGPGGVLHLSEHLTAPLFA
+ALVGVGARLEAEWLGRGRAVPRALVRAAALCGAAWLTGLFGAAVVNVLAHLAVLTVLMAL
+LAALPLAAHLVLAVLAGGGGLLLAATSTADVVDRLVPLAQALGLSRATLTPWVSAFLTDG
+PYRLPLFLAWALLGAVLVATVHGTTTAAPARRARLTGLAWAAGGIALAGVVLALSRTQTG
+AAPVPYTATPAEALLDTGLVLAVLGACAALAPRRAGLLAVPGAMTLSVYVAHLWYLGWVR
+RLGPGPWRSATGADDTWFNLAVLVVGALLLPLLWRAVVRVGPFRAGPLEGVVRLLTAPFD
+RAR*
+>NZ_CP040019.1_335
+MPRVSSRPHTGRDRLVWVDVARGVALVSMFVAHVAPSGGPAGVLNLSEHLTAALFAALVG
+VSARLEVQGLGVGRALVRAMVRAAALLGAAWLTSLFDAAVVDVLTHLAVITVLMALLAAL
+PLAVHLVLALLAGGGGILLTASGTLAVADALAPAARALGLDPAELVPAVAGFLTAGPYRL
+TAFLGWALLGAVLVRTVHGTTTALPRSGRLVGLGWGVGGVVLAGLVILLSRVQTGAAPVP
+YTGTAAEILVDTGLVLGVLGLCAAVVPSRPSPATDLLAVPGSMTLSVYVAHQAYLGWVLT
+AGPGPWVDGRGADDTWFNLAVLLAGGILLPLLWRGLVRVRPFRAGPLEGVVRLVTDPIGR
+RSRGEH*
+>NZ_CP083691.1_282
+MTLAAGHRLTWVDVARGLALVSMFVAHTAPTGGPGGVLNLSEHLTAALFAALVGVSAHLE
+QRRHGFWRAFLRAVVRAAALCGAAWLTSHFGAAVVDVLTHLAVLTVLMSVLALLPGLVQL
+LLVPAAAWAGVRVGALTADDVAARLEPARALVPAQVRPGPAVVAEQAAAFFTVGPYFLLF
+FTAWALLGAVVVRSVQGGGLRAALRLGGHPGPGLGGRAAGGVWAGVGLLVGGAGVALARQ
+RTEDSPVPYEATWDYALLAAGLVLIVLGACAAVVPSHVPWLTAVLAVPGSMTLSVYVAHQ
+AYLGWVLRAGPGPWLSELGTDDTWFNVGALCAAGLLLPLLWRALVRAEPWRRGPLEGPVA
+LVTHGLARR*
+>NZ_CP097650.1_39
+MPAPSSHAPAATHTARGRLVWVDVARGLALVAMMVAHTAPAGGPGGVLHLSEHLTAPLFA
+ALVGVGARLEVEWLGRGRAVPRALVRAAALFGAAWLTGLFGAAVVNVLAHLAVLTVLMAL
+LAALPLAAHLVLAVLAGGGGLLLAATPTADVVDRLLPAAQALGLSRATLTPWVSAFLTDG
+PYRLPLFLAWALLGAVLVATVHGTTTAAPARRARLTGLAWAAGGIALAGVVLALSRTQTG
+AAPVPYTATPAEALLDTGLVLIVLGACAALAPRRAGLLAVPGAMTLSVYVAHLWYLGWVR
+RLGPGPWRSATGADDTWFTLAVLVAGALLLPLLWRAVVRIGPFRAGPLEGVVRLLTAPFD
+RAR*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000214.fa

@@ -0,0 +1,35 @@
+>NZ_CP042169.1_59
+MTGTDSADATPSRLRYAFLGPAGTFTEAALRKVADPAEAEFVPAGSVLSAVAALRRGEVD
+RAVVPIENSVEGGVSATVDEIALGETLQILAEVHVAISFVLVGRPGVAIEDVRRVTTHPH
+AWAQVRGWAETALPGVEFTPAPSTAAGAGLVAQGDFDAAVCAPLVAEQTGLPVLAERIED
+VPGAVTRFVLLSRPTALPAPTGADKTTLVVPLPEDRPGALGQILAEFTTRGVNLSRIESR
+PTGEGIGRYFFSLDLEGHLAEARVGDALAALYREYPDLRFLGSYAQAEPVPTRVPAEFTD
+AAYRSGRAWVESLRSR*
+>NZ_CP033200.1_2028
+MTGTGSADATPSRLRYAFLGPAGTFTEAALRKVADPAEAEFVSAGSVLSAVAALRRGEVD
+RAVVPIENSVEGGVSATVDEIALGETLQILAEVHVPISFVLVGRPGVAMEDVRRVTTHPH
+AWAQVRGWAETALPGVDFTPAPSTAAGAGLVAQGDFDAAVCAPLVAEQTGLPVLAERIED
+VPGAVTRFVLLSRPTALPAPTGADKTTLVVPLPEDRPGALGQILAEFTTRGVNLSRIESR
+PTGEGIGRYFFSLDLEGHLAEARVGDALAALYREYPDLRFLGSYAQAEPVPTRVPAEFTD
+AAYRSGRAWVESLRSR*
+>NZ_CP040019.1_320
+MTRDDAAPLGRCTFLGPAGTFTEAALRAVPGAEQAELIPATSVPAALAAVRAGEADHAMV
+PIENSVEGGVSATLDDIASGDDLQILREELVQISFVLVGRPGVELADVRRVSTHTHAWAQ
+VRGWVEANLPGVEYTPSGSTAAAARALADAEPGSEPFDAAVCAPLVAEQTGLPVLARAIE
+DVTGAVTRFVLVGRPGPLPAHTGSDKTTLTVPLPDDHPGALREILDQFATRGINLSRIES
+RPTGEGMGKYFFSIDLEGHLAEERVAAAMGALHRIFPGVRFLGSYPRAEHRPVAVRRHTS
+DDAYRAGRAWVDGLLAR*
+>NZ_CP083691.1_261
+MSPAPRYAFLGPAGTFTEAALRQVASPEDVDLLPASSVLAALAAVRVGEAERAVVPIENS
+VEGGVTATLDDIGADEPLQILAEVLVPISFVLVGRPGVALEDVRRVTTHTHAWAQVRGWM
+EAHLPGVEFTPAGSTAAGARALLPSAGGDGAVASFDAAVCAPLVAEQTGLPVLAEAIEDV
+TGAVTRFVLVSRPGPVPEPTGADKTTLTVPLPDDHPGALREILDQFATRGINLSRIESRP
+TGEGMGRYFFSIDLEGHVAEERVGAALAALHRTFPGVRFLGSYPRAEGRPPTVPEHVTDA
+AYRRGTAWVRGLRSR*
+>NZ_CP097650.1_54
+MTGTDSADATPSRLRYAFLGPAGTFTEAALRKVADPAKAEFVSAGSVLSAVAALRRGEVD
+RAVVPIENSVEGGVSATVDEIALGETLQILAEVHVPISFVLVGRPGVAIEDVRRVTTHPH
+AWAQVRGWAETALPGVEFTPAPSTAAGAGLVAQGDFDAAVCAPLVAEQTGLPVLAERIED
+VPGAVTRFVLLSRPTALPAPTGADKTTLVVPLPEDRPGALGQILAEFTTRGVNLSRIESR
+PTGEGIGRYFFSLDLEGHLAEARVGDALAALYREYPDLRFLGSYAQAEPVPTRVPAEFTD
+AAYRSGRAWVESLRSR*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000229.fa

@@ -0,0 +1,35 @@
+>NZ_CP042169.1_79
+MTGGLDLSLDPHDPAQRPGRLGVGVVSAGRVGAVLGSALRAAGHTITGVHAVSEASRDRA
+EMLLPGVPVLEIPEILRRSEMVVFAVPDDALGELVAGLAAAGHVQTGHLLVHTSGRYGVG
+VMEPVRAHGAIPLAIHPAMTFTGLSLDVARLQDCVFGVTADPVVLPVAQALVVEMGGEPV
+VVKEADRAAYHLALSHGSNHLVTLTAQARQILETIGVADPERVLRSLMTAALENALTDGD
+GALTGPVARGDVDTLRTHRETLGELEAGGLPPDVRAVWETLARATTDRAETRGTLRADTA
+ARLREVLDDSDDPHDD*
+>NZ_CP033200.1_2048
+MTGGLDLSLDPHDPAQRPGRLGVGVVSAGRVGAVLGSALRAAGHTITGVHAVSEASRDRA
+EMLLPGVPVLEIPEILRRSEMVVFAVPDDALGELVAGLAAAGHVQTGHLLVHTSGRYGVG
+VMEPVRAHGAIPLAIHPAMTFTGLSLDVARLQDCVFGVTADPVVLPVAQALVVEMGGEPV
+VVKEADRAAYHLALSHGSNHLVTLTAQARQILETIGVADPERVLRSLMTAALENALTDGD
+GALTGPVARGDVDTLRTHRETLGELEAGGLSADVRAVWETLARATTDRAETRGALRADTA
+ARLREVLDDSDDPHDD*
+>NZ_CP040019.1_298
+MTGGLDLTLDPTDPTQRPGRLGVGVVGAGRVGAVLGAALRNAGHTITGVHAVSEASRTRA
+EALLPEAPVLEIPEILRRSEMVLFAVPDDVLPELVAGLAAAGHVQTGHLVVHTSGRHGVG
+ALNPVRAHGAIPIALHPAMTFTGLSLDLARLQDCVFGVTADPVVLPVAQALAVEMGGEPV
+VIKEADRGVYHAALSHGSNHLVTLTAQAAQLLRSIGVQDTERLLRPLMHASLENALADGD
+GALTGPVARGDVETVRGHRETLRELVAEGMPADVLAVWETLARATADRAEARGALRPDVA
+ARLREALAPDA*
+>NZ_CP083691.1_239
+MSRMDMSPELTGADPADRPGRLGVGVIGAGRVGAVLGAALRGAGHTITGVHAVSEASRTR
+AEALLPGVPVLELPEILRRSEMVLFAVPDDALPELIAGLAAAGHIQTGHLLVHTSGRHGV
+RVMDPVRAHGAIPLAVHPAMTFTGLSLDLARLQDCVFGVTADPVVLPVAQALVVEMGGDP
+VVVKEADRAAYHLALSHGSNHLVTVTAQARQILEEIGVAEPERMLRPLMQASLENALTDG
+DGALTGPVARGDVETVRGHRDTLRELVDGGMPADVLAVWESLARATAQRAARRGALRADA
+AERILAVLDGADDGPDATG*
+>NZ_CP097650.1_73
+MTGGLDLSLDPHDPAQRPGRLGVGVVSAGRVGAVLGSALRAAGHTITGVHAVSEASRDRA
+EMLLPGVPVLEIPEILRRSEMVVFAVPDDALGELVAGLAAAGHVQTGHLLVHTSGRYGVG
+VMEPVRAHGAIPLAIHPAMTFTGLSLDVARLQDCVFGVTADPVVLPVAQALVVEMGGEPV
+VVKEADRAAYHLALSHGSNHLVTLTAQARQILETIGVADPERVLRSLMTAALENALTDGD
+GALTGPVARGDVDTLRTHRETLGELEAGGLSADVRAVWETLARATTDRAETRGALRADTA
+ARLREVLDDSDDPHDD*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000252.fa

@@ -0,0 +1,40 @@
+>NZ_CP042169.1_106
+MSTVSTSPRATEDSVTPRRHSLTEGQKPGWTWMAVAAAAAVVAAGLTVLLSGAFNVVGFV
+IIAAILYIAGLYVATRVMENRRRAADGLCRNLVWLAFLVALVPLVSVLWSVLSAGLPTLI
+ANPQIMAYDMKGITGIDDSAWVEDGKPAGGLAGGFGHALIGTVVITIIATLISVPIGMLT
+SIYLVEYSRGGWFSRAIVFFVDVMTGIPSIVAGLFAYAAITWVLTLVTGSKSTALQSVQM
+GLTAAIALSVLMIPVVVRSTEEMLRVVPNELREGAYALGVRKWQTIAKVVLPTAISGIAS
+GVTLAIARVAGETAPILVTAGFATSINWNPFDNWMTALPVYIYRQLVAPTSPTAADPSTA
+RAWAAALLLVTIVMLLNLAARFIAKAFAPKKGR*
+>NZ_CP033200.1_2075
+MSTVSTSPRATEDSVTPRRHSLTEGQKPGWTWMAVAAAAAVVAAGLTVLLSGAFNVVGFV
+IIAAILYIAGLYVATRVMENRRRAADGLCRNLVWLAFLVALVPLVSVLWSVLSAGLPTLI
+ANPQIMAYDMKGITGIDDSAWVEDGKPAGGLAGGFGHALIGTVVITIIATLISVPIGMLT
+SIYLVEYSRGGWFSRAIVFFVDVMTGIPSIVAGLFAYAAITWVLTLVTGSKSTALQSVQM
+GLTAAIALSVLMIPVVVRSTEEMLRVVPNELREGAYALGVRKWQTIAKVVLPTAISGIAS
+GVTLAIARVAGETAPILVTAGFATSINWNPFDNWMTALPVYIYRQLVAPTSPTAADPSTA
+RAWAAALLLVTIVMLLNLAARFIAKAFAPKKGR*
+>NZ_CP040019.1_268
+MSTAIDDVSTRQDTPPSKHRQNSLTAGQKPGWVWMAIAAAAVLLGLGIEALLSGAAPFSE
+DFSLARFVVLAGVLYIAGMYLVTRVMENRRRASDGLWKNLVWTAFLIALVPLVSVIWTVL
+EGGGPTLLSNPQVLWNDMDGVTGATDAAYDQAGSPAGGLPGGFAHALIGTLVITIIATLI
+AVPIGLLASIYLVEYGRDGWLSRAITFFVDVMTGIPSIVAGLFAYAAMTVLLELIMGPGP
+AALQAVKMGFTAAVALTVLMIPVVVRSTEEMLRVVPNELREGSYALGVRKWRTIFKVVLP
+TAISGIASGVTLAIARVTGETAPILVTAGYAMTTNWNAFDNWMTALPVYIYRQIVSPTSP
+TAADPSMARAWSAALVLIFIVMALNLLARVIAKAFAPKTGR*
+>NZ_CP083691.1_209
+MSTALNDTPTRENTPASKHTQNSLTAGQKPRWTWMAVAAGAVVLGLGLEALLAGGFADFS
+IARFIILAAILFVAGMYVATRVLENRRQATDGLWRNLVWAAFLIALVPLISVLWSVVADG
+GATLFGNPQLLVNDMQGVTGVTDAQYVQAGEPMGDLPGGFAHALVGTFLITVIATVIAVP
+IGLLTSIYLVEFGRDGWLSRAIIFFVDVMTGIPSIVAGLFAFAAMSVVLEMVMGSGPKAL
+QSVKMGLTAAIALTVLMIPVVVRSTEEMLRVVPNELREGSYALGVRKWRTIFKVVLPTAI
+SGIASGITLAIARVTGETAPILVTAGFASAVNWNPFDNWMTALPVYIYRQLVAPTSPTAM
+DASTSRAWAAALVLIIIVMVLNLLARIVAKAFAPKTGR*
+>NZ_CP097650.1_101
+MSTVSTSPRATEDSVTPRRHSLTEGQKPGWTWMAVAAAAAVVAAGLTVLLSGAFNVVGFV
+IIAAILYIAGLYVATRVMENRRRAADGLCRNLVWLAFLVALVPLVSVLWSVLSAGLPTLI
+ANPQIMAYDMKGITGIDDSAWVEDGKPAGGLAGGFGHALIGTVVITIIATLISVPIGMLT
+SIYLVEYSRGGWFSRAIVFFVDVMTGIPSIVAGLFAYAAITWVLTLVTGSKSTALQSVQM
+GLTAAIALSVLMIPVVVRSTEEMLRVVPNELREGAYALGVRKWQTIAKVVLPTAISGIAS
+GVTLAIARVAGETAPILVTAGFATSINWNPFDNWMTALPVYIYRQLVAPTSPTAADPSTA
+RAWAAALLLVTIVMLLNLAARFIAKAFAPKKGR*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000274.fa

@@ -0,0 +1,25 @@
+>NZ_CP042169.1_133
+MGGMTDAQTPTVPTPEQDRERLKQLIQDLAVVHGRVTLSSGKEADYYVDLRRVTLHHEAA
+PLIGRVMLRLLEENGIGCDAVGGLTMGADPVATAMMHQAGAAGRALDAFVVRKAQKSYGM
+GRQVEGPGVDGRRVVVLEDTSTTGGSALTAVEGVRNAGGDVQAVAVIVDRATGAAERVAE
+EAGVPYLYAFGKDELGLD*
+>NZ_CP033200.1_2103
+MGGMTDAQTPTVPTPEQDRERLKQLIQELAVVHGRVTLSSGKEADYYVDLRRVTLHHEAA
+PLIGRVMLRLLEENGIEFDAVGGLTMGADPVATAMMHQAGTVGRALDAFVVRKAQKSYGM
+GRQVEGPGVDGRRVVVLEDTSTTGGSALTAVEGVRNAGGDVQAVAVIVDRATGAAERVAE
+EAGVPYLYAFGKDELGLD*
+>NZ_CP040019.1_235
+MGGMTDAQTPTVPTPEQDRERLKELIQELAVVHGRVTLSSGKEADYYVDLRRVTLHHEAA
+PLIGRVMLRLLEENGVQFETMGGLTMGADPVATAMMHQAGAQGRALDAFVVRKAQKSYGM
+GRQVEGPGVDGRDVVVLEDTSTTGGSALTAVEGVRRAGGRVQAVAVIVDRATGAAERVAE
+EADVPYLYAFGKDELGLD*
+>NZ_CP083691.1_169
+MTAEHTSVAPTPEQDRERLRELIKELAVVHGRVTLSSGAEADYYVDLRRVTLHHEAAPLI
+GRVMLRLLEENGIEFETMGGLTMGADPVATAMMHQAGAQGRALDAFVVRKAQKSYGMGRQ
+VEGPGVEGRRVVVLEDTSTTGGSALTAVEGVRKAGGDVQAVAVIVDRATGAAERVAEEAG
+VPYLYAFGKDELDLD*
+>NZ_CP097650.1_141
+MGGMTDAQTPTVPTPEQDRERLKQLIQDLAVVHGRVTLSSGKEADYYVDLRRVTLHHEAA
+PLIGRVMLRLLEENGIGCDAVGGLTMGADPVATAMMHQAGAAGRALDAFVVRKAQKSYGM
+GRQVEGPGVDGRRVVVLEDTSTTGGSALTAVEGVRNAGGDVQAVAVIVDRATGAAERVAE
+EAGVPYLYAFGKDELGLD*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000333.fa

@@ -0,0 +1,40 @@
+>NZ_CP042169.1_236
+MSDAQSTATTAPAAARDGAAGEVLLEVRDGLGRITLNRPRALNALTQDMVRAIDAALTDW
+AADPAVRGVLIRGAGEKGLCAGGDVVSLRASLLAGRFAEAEEFFRDEYAMNERIAAYPKP
+YVAFMDGVVLGGGMGVSAHGSHRVATERTRAGMPETAIGFTPDVGGSFHLARAPFQAGRH
+LAATSAHASGSDAVALGLADVFVESARLDELEQALAAAFGALGPAADAGARDEAAFAAAD
+EVLARFAVAEDAQPASALVAGREWIEDVYDRETAAEVLAALDERAAAGGEHAEAAGQAAE
+AIRTKSPTAVAVAHEAQRRLAARGADLTVADALRQEFTIATHLMREPDMAEGIRALLVDK
+DKDPTWSPARLEDVSTEDVAGHFEPVSGVDPLQLG*
+>NZ_CP033200.1_2204
+MSDAQSTATTAPAAARDGAAGEVLLEVRDGLGRITLNRPRALNALTQDMVRAIDAALTDW
+AADPAVRGVLIRGAGEKGLCAGGDVVSLRASLLAGRFAEAEEFFRDEYAMNERIAAYPKP
+YVAFMDGVVLGGGMGVSAHGSHRVATERTRAGMPETAIGFTPDVGGSFHLARAPFQAGRH
+LAATSAHASGSDAVALGLADVFVESARLDELEQALAAAFGALGPAADAGARDEAAFAAAD
+EALARFAVAEDARPASALVAGREWIEDVYDRETAAEVLAALDERAAAGGEHAEAAGQAAE
+AIRTKSPTAVAVAHEAQRRLAARGADLTVADALRQEFTIATHLMREPDMAEGIRALLVDK
+DKDPTWSPARLEDVSAEDVAGHFEPVPGVDPLQLG*
+>NZ_CP040019.1_117
+MSDAQTTTTAGSAPQAGEGGDVLLEVRDGLARITLNRPRALNALTHVMVQEIDAALVAWA
+ADPAVRGVLIRGAGEKGLCAGGDVVSLHASLTGGRFEEAAQFFRDEYRMNHRISAYPKPY
+VAFMDGIVLGGGMGVSVHGSHRVATERTRAGMPETAIGFTPDVGGSYHLARAPFHAGRHL
+AATSAHASGADAVALGLADAFVESARLDELEQAMADALGSLEAPSGDAGRDGVRDEAAFA
+AADEVLARFAMAEGERPDSALAAGREWIEDAYGRQTAAEVLAALDERAAGGGEHADAARS
+AAEAIRAKSPTAVAVAHEAQNRLAAHGQDLTVAEALRQEFTVGAHLMRAPDMPEGIRALL
+VDKDKDPKWSPARLEDVTADAVATHFEPVEGVARLELS*
+>NZ_CP083691.1_86
+MSEQTSTPQAAAEDEVLFEAADGVGVITLNRPKALNALSHGMVVAVREQLAAWEEDPAVR
+AVVVRGAGERGLCAGGDVVSLHGMITTGRAAEAMGYFEDEYAMNHAISVYPKPYVAFMDG
+FVLGGGVGVSAHGSHRVVTERTRIGMPETGIGFTPDVGGSWLLARAPRNLGRHLGLTSAF
+ATGADALELGFGDVLVDSGDLDAIVAELRAEVGSAGDDADAAHAAVDAVLARHARPASEA
+PLLADAEWLEPAYAHDRVEDVFAALEATAADHADEGVRTRAAEAAETVRAKSPTAVKVTL
+EALRRLGDRAGGTGRREGVAAALEQEHTLASHLTRGHDMAEGIRAQLVDKDRNPQWSPAT
+VEEVSDEAVAAHFGPGEDAPLRLR*
+>NZ_CP097650.1_236
+MSDAQTTATTAPAAAQEGAAGEVLLEVRDGLGRITLNRPRALNALTQDMVRAIDAALTDW
+AADPAVRGVLIRGAGEKGLCAGGDVVSLRSSLLAGRFAEAEEFFRDEYAMNERIAAYPKP
+YVAFMDGVVLGGGMGVSAHGSHRVATERTRAGMPETAIGFTPDVGGSFHLARAPFQAGRH
+LAATSAHASGSDAVALGLADVFVESARLDELEQALAAAFGALGPAADAGARDEAAFAAAD
+EVLARFAVAEDARPASALVAGREWIEDVYDRETAAEVLAALDERAAAGGEHAEAAGQAAE
+AIRTKSPTAVAVAHEAQRRLAARGADLAVADALRQEFTIGTHLMREPDMAEGIRALLVDK
+DKDPTWSPARLEDVSAEDVAGHFEPVPGVDPLELG*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000341.fa

@@ -0,0 +1,20 @@
+>NZ_CP042169.1_253
+MTTPAPVASAARARRRAARSGPRPQLRMGLNGFLVAWLLPNLVMAAVVAVLAVVPGLQAF
+GSLTPLLTVVGVAGLVVGLPLCLLVNWAFRHVLNQWVHVLAYALIGMLYGLVVLTQGAAG
+ILPMLIPVIGFPAAVLMALGRTAARPLVRTVTPEPSPAEPA*
+>NZ_CP033200.1_2222
+MTTPAPVASAARARRRAARSGPRPQLRMGLNGFLVAWLLPNLVMAAVVAILAVVPGLQAF
+GSLTPLLTVVGVAGLVVGLPLCLLVNWAFRHVLNQWVHVLAYALIGMLYGLVVLTQGAAG
+ILPMLIPVIGFPAAVLMALGRTAARPLVRTVTPEPSPAEPA*
+>NZ_CP040019.1_98
+MGLNGFLVAWLLPNLVMAALVAVLAVLPGLQAFGSLTPLLTVVGIAGLVVGLPLCLLVNF
+AFRHVLNQWVHVLAYALIGMLYGLVVLTQGAAGILPMLIPVIGFPAAVLMALGRMAARPL
+VQVVTPGQEAEARSAAQTASPADPEPSERAARGA*
+>NZ_CP083691.1_68
+MTTPAPVKSTARARRKAARAVSGPRPRLRMGLNGFLVAWLLPNLLMAAVVLALTLIPSLQ
+RFGTLTPLLTVVGIAGLVIGLPLCLLVNRAFRHVLNQWVHVLAYALVGMLYGLVVLAQGV
+GGVLPMLIPVIGFPAAVLMGLGRLAARPLVDVVPGAEPRS*
+>NZ_CP097650.1_251
+MTTPAPVASAARARRRAARSGPRPQLRMGLNGFLVAWLLPNLVMAAVVAVLAVVPGLQAF
+GSLTPLLTVVGVAGLVVGLPLCLLVNWAFRHVLNQWVHVLAYALIGMLYGLVVLTQGAAG
+ILPMLIPVIGFPAAVLMALGRTAARPLVRTVTPEPSPAEPA*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000349.fa

@@ -0,0 +1,30 @@
+>NZ_CP042169.1_261
+MVAPPPHHDAAPSPVFPVAAGLQAGLTASQLRGPRFDAPHHGLRHTAGGQPSLADVVRAL
+QRTNPGTAATHATAARLWGMWLPRQWERGPIHLARTRAEGGAPRRSGVVGHELHPQDPVL
+VRARVRITTPAATWAALAQLGLPLADVVAAGDSLLQRADGPAGRRRPGDHPRCTVRDLEA
+EVLRVRGRRGTRTLRAALPLLRDGADSRAETLLRLALADAGVPEPEVNPLLMLSDGSTVR
+PDLVWREAHVCVQYEGDHHRTDPRQWRRDIERDRRMQAEGWIVLRVTASVFTRRGLDALL
+RDLAAHLRLPLPA*
+>NZ_CP033200.1_2230
+MVAPPPHHDAAPSPVFSVAAGLQAGLTASQLRGPRFDAPHHGLRHTAGGQPSLADVVRAL
+QRTNPGTAATHATAARLWGMWLPRQWERGPIHLARTRAEGGAPRRSGVVGHELHPQDPVL
+VRARVRITTPAATWAALAQLGLPLADVVAAGDSLLQRADGPAGRRRPGDHPRCTVRDLEA
+EVLRVRGRRGTRTLRAALPLLRDGADSRAETLLRLALTDAGVPGPEVNPLLLLSDGSTVR
+PDLVWREAHVCVQYEGDHHRTDPRQWRRDIERDRRMQAEGWIVLRVTASVFTRRGLDALL
+RDLAAHLRLPLPA*
+>NZ_CP040019.1_428
+MWLPAEAEQRVHLSRVRPGAQPRIAGVAGHRIRIDPVTGLTVLGVGDKAYTVTTPERTWT
+DLASMGLTREDLIVAGDALLHRRDGPGGEVAAGRQHPLSSLADLGVAVAEARGVTGWRLL
+GEALPHLRERSDSPQETRLRVRLVGAGFPEPQVNPEVPLVWDAWGRILRSTPVDLYFAAA
+KVALQFEGEHHFSRARQYRRDMRRDEELRDVGVETVRVDSAVFGAGEWARFMARLQRLLT
+TRGGA*
+>NZ_CP083691.1_381
+MDGPRDLVWREARVAIEYEGAHHFEDADQYRRDMRRDEELRALGWVVLRVDRDVWTPQGW
+EVFLGRLGAALARWSC*
+>NZ_CP097650.1_259
+MVAPPPHHDAAPSPVFPVAAGLQAGLTASQLRGPRFDAPHHGLRHTAGGQPSLADVVRAL
+QRTNPGTAATHATAARLWGMWLPRQWERGPIHLARTRAEGGAPRRSGVVGHELHPQDPVL
+VRARVRITTPAATWAALAQLGLPLADVVAAGDSLLQRADGPAGRRRPGDHPRCTVRDLEA
+EVLRVRGRRGTRTLRAALPLLRDGADSRAETLLRLALADAGVPEPEVNPLLMLSDGSTVR
+PDLVWREAHVCVQYEGDHHRTDPRQWRRDIERDRRMQAEGWIVLRVTASVFTRRGLDALL
+RDLAAHLRLPLPA*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000365.fa

@@ -0,0 +1,20 @@
+>NZ_CP042169.1_288
+MKLSAYTDVCLRVLMTLAAAEGERLTSQQIADRIQVPYNHVIKAVAELRRRGTIQVARGR
+LGGARITEAGLDQRVGELVRDLSPRAEVLDCAGHETGVPCPFAADCRLREALARAREAFM
+AELDLLTVRDLVRPGRAGATGPVSLGLPAMGSHAATV*
+>NZ_CP033200.1_5
+MKLSAYTDVCLRVLMTLAAAEGERLTSQQIADEIHVPYNHVIKAVAELRRRGTIEVLRGR
+HGGAMIAAAGLDQRVGELVRTLSSRDEVIDCAGRDSGVACPYAGDCRLRGALHRAREAFL
+AELDTLRIRDLVSAGPVGGPVLLGLPEIPVTH*
+>NZ_CP040019.1_50
+MKLNAYTDVCLRVLMTLAGDEGERLTSQQIADRIQVPYNHVIKAVAELRRRGAIDVARGR
+LGGATIAEAGLELRVGALVRDLAGWDEVIDCTGRESGVACPLAGDCRLRGALHRAREAFL
+AELDAVRVRDLVAAGPAAGPVLLGLPEIPLPADPRPRRRTCPAGA*
+>NZ_CP083691.1_28
+MKLTAFTDVCLRVLMTLGRDAGAKMTSQEIADRIGVPYNHVVKAVGELRRRGLVDVARGR
+AGGAVITEAGLDQRVGELVRALSGRPEVVDCEGLESGTPCPLLEACSLRGALARAREAFF
+AELDRQRVRDLVSLPAEFLGLRRLPGA*
+>NZ_CP097650.1_295
+MKLSAYTDVCLRVLMTLAAAEGERLTSQQIADRIQVPYNHVIKAVAELRRRGTIEVLRGR
+HGGAMIAAAGLDQRVGELVRSLSSRDEVIDCTGRDSGVACPYAGDCRLRGALHRAREAFL
+AELDTVQIRDLVSAGPVGGPVLLGLPEIPVAH*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000421.fa

@@ -0,0 +1,41 @@
+>NZ_CP042169.1_354
+MTSEHTSETRRLRSRTSFVLLAVFGVAAIVALLTSAVEPWPPLVLAPGLIAGLWLLSQWH
+REVAAPTRWAVLALGTLTWALSALWDLTPLGALAFALAGALEVMWSRHARAVVTLLVLTV
+GSAAGALVFVTDPQALWVYVGMGALLTGVACVTIPVSRISFDLMRLQDQRAEQERAASLD
+AERLRFSQDLHDIQGHALHVVKLKIAVAQRMLSTDTDAAQRELDEAQQTLRQTMAETKAL
+AQDGHTLTLRGELANSVALLEATGITVTTDDDGGPRGEEFEHVAGVVIREGTTNILRHSD
+ARRVEISLAPGHVVISNDGAAGVSAEDHTGGLDNLRSRLAGVGGRLDVSCVDGRFTLGAR
+WEADEEESV*
+>NZ_CP040019.1_983
+MTPPSPLAPEPVPDRAPAQDPGSGHAPSPASAALPPGHRPTGALPVAPGFDRDLHRLWWY
+TAAGLLSAVVVVAGFLVFVMARRLAVAEGPDASPLAVTVLVAGIAAAVAAAVGQTLATLR
+LRRAWEEEREPLRRTAVAALLPALLVALTPLAVPSLSAWPVLSLWLSVCLIAPQAAAHVR
+TAVLTSGAAATLGLTALALVRTPAGPADSAVGVLLWWAMVLLVVLPTVWVWRVAVRLEEA
+RAQAGELAVARERLRFAADLHDVQGHHLQVIALQAELAGRLLEKGRTDQAGAALRDVREQ
+AAEALGETRALVRGLRQVSVASEIENAREVLAATGAVVEVDVDPAAARLAREAARLVGLA
+VREATTNALRHAEPRRVRLALGPADGAAGGVRLTVTNDGARPPAAPPGTGLAGLAARAAE
+VSGRLSAGPDDDGGFRLELTVPSSSGATTRTDPTTTTGEDA*
+>NZ_CP040019.1_2540
+MTSEPTSETRRLRSRTSFVLLAVFGVAAIVALLTSAVEPWPPLVLAPGLIAGLWLLSQWH
+REVAAPTRWAVLALGTLTWALSALWELTPLGALAFALAGALEVMWSRHARAVVTLLVLTV
+GAAAGALVFVTDPPALWVYVGMGALLTGVACVTIPVSRTSFDLMRLQDQRAEQERAASLD
+AERLRFSQDLHDIQGHALHVVKLKIAVAQRMLSTDTDAARRELDEAQQTLRQTMAETKAL
+AQDGHTLTLRGELANSVALLEAAGITVTTDDDGDPRREEFEHVAGVVIREGTTNILRHSD
+ARRVEISLAPGHVVISNDGVAGAPAEDHTGGLDNLRSRLAGVGGRLDVSCGDGRFTLEAR
+WEADEEETV*
+>NZ_CP083691.1_1155
+MSPAGGPPAPARPTVGTAEHDPAVLPLHLWPSTMGFAGVWLISFGFVLVELLRRAFTPGD
+GRGEAILGVAAIAVFILVYLAAFVVPRPVRAWPAWANTVLTWFVLAGCVAVLTRILGVHA
+LLYSPFLVATWIFPHRLRVGLTGAGATMAAALATGLLFFPGDPALPVVLGNLAVLLVVLV
+GMRLAIARDDRVVEMTHELDLAGQRERLGRDLHDILGHSLTTINVKTQLVHRLIDTDPAR
+AKEEAAEVIALSRTALAEARAAVAELAAPELGGQLSLSVGALRDAGMAVEAPPPGAVTEV
+PQRRRALAAWIVREAVTNVLRHAGARRVRISLDAHHVAVLDDGAGLPAAVVAGVGPRTLA
+ERAAAEGARLEVGPGLGGAGTGVAVHWGGTTPEAARGVLPATEGRMDA*
+>NZ_CP097650.1_361
+MTSEHTSETRRLRSRTSFVLLAVFGVAAIVALLTSAVEPWPPLVLAPGLIAGLWLLSQWH
+REVAAPTRWAVLALGTLTWALSALWDLTPLGALAFALAGALEVMWSRHARAVVTLLVLTV
+GSAAGALVFVTDPQALWVYVGMGALLTGVACVTIPVSRISFDLMRLQDQRAEQERAASLD
+AERLRFSQDLHDIQGHALHVVKLKIAVAQRMLSTDTDAAQRELDEAQQTLRQTMAETKAL
+AQDGHTLTLRGELANSVALLEATGITVTTDDDGGPRGEEFEHVAGVVIREGTTNILRHSD
+ARRVEISLAPGHVVISNDGAAGVSAEDHTGGLDNLRSRLAGVGGRLDVSCVDGRFTLGAR
+WEADEEESV*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000424.fa

@@ -0,0 +1,20 @@
+>NZ_CP042169.1_360
+MDAAETPDGPETAAHDGGRPAWQHRLLAGGEEPDPRFTLANERTFLAWVRTALALLAGGV
+AVEAFTGALFAPPVRVVLSTVLLVLAALLALGAGARWLRVERAMRRGRPLPLPLIVPVLA
+GGVVLAVVVLLAAVVLPRG*
+>NZ_CP033200.1_93
+MDAAETPDGPETAAHDGGRPAWQHRLLAGGEEPDPRFTLANERTFLAWVRTALALLAGGV
+AVEAFTGALFAPPVRVVLSTVLLVLAALLALGAGARWLRVERAMRRGRPLPLPLIVPVLA
+GGVVLAVVVLMLAVVLPRG*
+>NZ_CP040019.1_2527
+MDAAETPEGPEATAYDGGRPAWQHRLLAGGDEPDPRFTLANERTFLAWVRTALALLAGGV
+AVEAFTGALFAPPVRVALSTVLLVLAALLAVGAGARWLRVERAMRRGRPLPLPLIVPVLA
+GGVVLAVVVLMLAVVLPRG*
+>NZ_CP083691.1_2395
+MDAAETPDGPEAAAYDGGRPAWQHRLLAGGDEPDPRFTLANERTFLAWVRTALALLAGGV
+AVEAFTGALFAPPVRVALSTVLLVLAALLALGAGARWLRVERAMRRGRPLPLPLIVPVLA
+GGVVLAVVVLMLAVVLPRG*
+>NZ_CP097650.1_366
+MDAAETPDGPETAAHDGGRPAWQHRLLAGGEEPDPRFTLANERTFLAWVRTALALLAGGV
+AVEAFTGALFAPPVRVVLSTVLLVLAALLALGAGARWLRVERAMRRGRPLPLPLIVPVLA
+GGVVLAVVVLLAAVVLPRG*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000454.fa

@@ -0,0 +1,35 @@
+>NZ_CP042169.1_401
+MTAKVLDGKATAAAIKEELRGRVAALAERGHTPGLGTLLVGEDAGSQKYVAGKHRDCAEV
+GIESIQRELPADATEEQILDVVRELNEDPACTGYIVQLPLPKHVDTQKVLEAIDPDKDAD
+GLHPMNLGRLVASVGGELDSPLPCTPAGCVELLRHHGVELAGKHVLVIGRGVTIGRPAGL
+VLTRREVNATVTLAHTGTTNLDELLASADVVIAAAGSAHMVTPEQVKEGVIVLDVGVSRV
+TGEDGTSRVLGDVDPAVKEKAAWMAPNPGGVGPMTRVMLLANVVEAAERAADGEDWAGER
+AGA*
+>NZ_CP033200.1_131
+MTAKVLDGKATAAAIKEELRGRVAALAERGHTPGLGTLLVGEDAGSQKYVAGKHRDCAEV
+GIESIQRELPADATEEQILDVVRELNEDPACTGYIVQLPLPKHVDIQKVLEAIDPDKDAD
+GLHPMNLGRLVASVGGELDSPLPCTPAGCVELLRHHGVGLAGKHVLVIGRGVTIGRPAGL
+VFTRREVNATVTLAHTGTTNLDELLASADVVIAAAGSAHMVKPEQVKEGVIVLDVGVSRV
+TGEDGTSRVLGDVDPAVKEKAAWMAPNPGGVGPMTRVMLLANVVEAAERAADGEDWAGER
+AGA*
+>NZ_CP040019.1_2490
+MTAKVLDGKATAAALKEELRERVSALTERGHTPGLGTVLVGEDAGSQKYVAGKHRDCAEV
+GIESIQRELPADATEEEILAVVRELNEDPACTGYIVQLPLPKHVDTQKVLEAIDPDKDAD
+GLHPMNLGRLVASVGGELDSPLPCTPAGCVELLRRHGVELAGKHVLVIGRGVTIGRPAGL
+VLTRREVNATVTLAHTGTQNLDELLGQADVVIAAAGSAHMVRPEQVKDGVIVLDVGVSCV
+TGEDGTSRVLGDVDPAVKEKAAWMAPNPGGVGPMTRVMLLSNVVEAAERAADAEDWAGER
+AEA*
+>NZ_CP083691.1_2355
+MTAKVLDGKATAAAIKEELRGRVAALAERGHTLGLGTLLVGEDAGSQKYVAGKHRDCAEV
+GIRSIQKELPGDATEEQILDVVRELNEDPECTGYIVQLPLPKHVDTQKVLEAIDPDKDAD
+GLHPMNLGRLVASVGGELDSPLPCTPAGCVELLRHHGVELAGKHVLVIGRGVTIGRPAGL
+VLTRREVNATVTLAHTGTTNLDELLASADVVIAAAGSAHMVKPEQVKEGVIVLDVGVSRV
+TGEDGKSRVLGDVDPAVKEKAAWMAPNPGGVGPMTRVMLLANVVEAAERAADGEDWAGER
+AGA*
+>NZ_CP097650.1_404
+MTAKVLDGKATAAAIKEELRGRVAALAERGHTPGLGTLLVGEDAGSQKYVAGKHRDCAEV
+GIESIQRELPADATEEQILDVVRELNEDPACTGYIVQLPLPKHVDTQKVLEAIDPDKDAD
+GLHPMNLGRLVASVGGELDSPLPCTPAGCVELLRHHGVELAGKHVLVIGRGVTIGRPAGL
+VLTRREVNATVTLAHTGTTNLDELLASADVVIAAAGSAHMVKPEQVKEGVIVLDVGVSRV
+TGEDGKSRVLGDVDPAVKEKAAWMAPNPGGVGPMTRVMLLANVVEAAERAAEDDGRAGER
+AGA*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000479.fa

@@ -0,0 +1,28 @@
+>NZ_CP042169.1_429
+MSPRRPRVPRVDPTTGAPRRTAVAAPAAPTTASPKADAPTPTPEATTPTPAATGAEVIDL
+HSVQERRQAGHHGHLDGHPDADRADTAPAAPASPSAPPRRTAPARPAGRRTRPAPRRAAS
+AAATAARRRAPLPEPVPARQITGRSLIVVAVLLVAAVLVAPTLRAFLNQQLEISAAREEI
+ATMQAQREDYERRIQLWDDPAYVTQQARERLELVMPGETLYSVTGRPSETETETDTEAED
+TPAARADEVVNTRLPWAEGLWDSAVRAGLE*
+>NZ_CP033200.1_159
+MSPRRPRVPRVDPTTGAPRRTAVAAPAAPTTAFPEADTPTPTPAAPTPAPAATDAEVIDL
+QSIQERRQAGHPDVDRADTAPAGDTAAPASPSAPPRRTAPARPAGRRPRPAPRGAASAAA
+TAARRRAPLPEPVPARQITGRSLIVVAVLLVAAVLVAPTLRAFLNQQLEISAAREEIATM
+QAQREDYERRIQLWDDPAYVTQQARERLELVMPGETLYSVTGRPSETDTATETEDTPAAG
+ADEVVNTRLPWAEGLWDSAVRAGLE*
+>NZ_CP040019.1_2459
+MAARRRAPLPDPVPARQITGRSLLVVAVLLVAAVLVAPTLRAFLNQQLEIAAAEEEIAAM
+QAQREDYEERIRLWDDPGYVTQQARERLQLVMPGETLYSVTGVPEEAPRDPRPEAPAGEP
+VNTRLPWAEGLWDSAVRAGPRVSPGPRPDPGSGPARP*
+>NZ_CP083691.1_2327
+MSARRPRVPRVAVPDTAPERATPAVVEPVVVEPAPVAPAAPEAPAPPAPPGPQVIDLQEA
+AQRRRHEATRPSPRPDAERAAAQRVARLREERRRATVREHAAARRRVPLPEPVPARQLTG
+RSLVVLAVLIIAAVLVAPTARLMLNQQLEISAAQQDIAEQQRRKAEYEEQIRRWDDPGYV
+AQQARQRLELVMPGETLYTVTGLPDESGAVPADSVPQEKVNDRLPWVEGLWDSAVRAATE
+*
+>NZ_CP097650.1_432
+MSPRRPRVPRVDPTTGAPRRTAVAAPAAPTTAFPEADTPTPTPAAPTPAPAATDAEVIDL
+QSVQERRQAGHPGHLDGHPDADRADTAPAGDTAAPASPSAPPRRTAPARPAGRRPRPAPR
+RAASAAATAARRRAPLPEPVPARQITGRSLIVVAVLLVAAVLVAPTLRAFLNQQLEISAA
+REEIATMQAQREDYERRIQLWDDPAYVTQQARERLELVMPGETLYSVTGRPSETDTATET
+EDTPAAGADEVVNTRLPWAEGLWDSAVRAGLE*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000517.fa

@@ -0,0 +1,60 @@
+>NZ_CP042169.1_473
+MAHLLGAENIGIAFGTRTVLEGLSLGVDEGDRIGLVGRNGDGKSTLMRILAGLQEPDTGR
+VTRRGGVRVGVLDQQDRLDPEHTVRQAVVGDVDDHVWASDPKVRDVLGGLLDGFDLEQSV
+RGLSGGQRRRVALARLLAGDDDVLFLDEPTNHLDVEGVAWLARHLKPRWRPTDGGLVVVT
+HDRWFLDEVCTRTWEVHDATVDPFDGGYAAWVLARAERSRQAAVTEQKRQQLVKKELAWL
+RRGAPARTSKPKFRIEAANAIIEDVPAPRDSVSLAKMATARLGKDVLDLEHVSLTLGEKP
+ILDDVTLRLAPGERLGVVGVNGAGKSTLLRLLDGRIAPDSGRVKRGKTVVSATLTQDVKE
+LDDVAHLRVAEVMAREGSSFQVGDREMSSGQLLEMLGFGTSRQWTQVSELSGGERRRLQL
+LRLLVGEPNVLMLDEPTNDLDTDTLAAVEDVLDGWPGTLVVVSHDRYLLERVTDHQVALL
+GDGKVRGLPGGVDQYLELRAAMDEAGGPARGAGPVRGRNDVVGTCAGMGGPEEDTGPTEA
+ERRLARKEMARLEKQMTRLRDRRSGLEARMAALGQAQDFDALTAASADLKDLDAQLDVLE
+EEWLRAAELAEGD*
+>NZ_CP033200.1_203
+MAHLLGAENIGIAFGTRTVLEGLSLGVDEGDRIGLVGRNGDGKSTLMRILAGLQEPDTGR
+VTRRGGVRVGVLDQQDRLDPEHTVRQAVVGDVDDHVWASDPKVRDVLGGLLDGFDLEQSV
+RGLSGGQRRRVALARLLAGDDDVLFLDEPTNHLDVEGVAWLARHLKQRWRPTDGGLVVVT
+HDRWFLDEVCTRTWEVHDATVDPFDGGYAAWVLARAERSRQAAVTEQKRQQLVKKELAWL
+RRGAPARTSKPKFRIEAANAIIEDVPAPRDSVSLAKMATARLGKDVLDLEHVSLTLGEKP
+ILDDVTLRLAPGERLGVVGVNGAGKSTLLRLLDGRIAPDSGRVKRGKTVVSATLTQDVKE
+PDDVAHLRVAEVMAREGSSFQVGDREMSSGQLLEMLGFGTSRQWTQVSELSGGERRRLQL
+LRLLVGEPNVLMLDEPTNDLDTDTLAAVEDVLDGWPGTLVVVSHDRYLLERVTDHQVALL
+GDGKVRGLPGGVDQYLELRAAMADAGGPARGAGVARGRNDVVGTCAGMGGPEEDTGPTEA
+ERRLARKEMARLEKQMTRLRDRRSGLEARMAELGQAQDFDALTAASADLKDLDAQLDVLE
+EEWLQAAELAEGD*
+>NZ_CP040019.1_2406
+MAHLLGAENIGIAFGTRTVLEGLSLGVDEGDRIGLVGRNGDGKSTLMRILAGLQEPDTGR
+VTRRGGVRVGVLDQQDRLDPTHTVRQAVVGDVEDHVWASDPKVRDVLGGLLDGLDLEQTV
+EGLSGGQRRRVALARLLAGDDDVLFLDEPTNHLDVEGVAWLARHLKDRWRPTDGGLVVVT
+HDRWFLDEVCTRTWEVHDATVDPFDGGYAAWILARAERARQAAVVEQKRQQLMKKELAWL
+RRGAPARTSKPKFRIEAANAIIADVPEPRDSVSLAKTATARLGKDVLDLEHVGLSLGEKR
+ILDDVTLRLAPGERLGVVGVNGAGKSTLLRLLDGRLEPDSGRVKRGKTVVTATLTQDVKE
+LDEVAHLRVAEVMAREGSAFQVGDKEMSAGQLLEMLGFGTSRQWTQVSELSGGERRRLQL
+LRLLVGEPNVLMLDEPTNDLDTDTLAAVEDVLDGWPGTLVVVSHDRYLLERVTDHQVALL
+GDGKVRGLPGGVDQYLELRAAMDAAGASGGPARGAGAARGRNDVVGTCAGMGGPEEDTGP
+TEAERRLARKEMARLEKQMTRLRDSRSVLEARMAELGQAQDFDALTAASADLKDLDAQLD
+VLEEEWLQAAELTEGD*
+>NZ_CP083691.1_2286
+MAHLLGAENIGISFGTRTVLDGLSLGVDEGDRIGLVGRNGDGKSTLMRILAGLQEPDTGR
+VTRRGGVHVGVLDQRDVLDPQDTVRRAVVGDVEDHVWASDARIRDVLGGLLAGMDLEQRV
+EGLSGGQRRRVALARLLAGDDDVLFLDEPTNHLDVEGVAWLAGHLNARWRPNDGGLVVVT
+HDRWFLDAVCTRTWEVHDAAVDPFDGGYAAWILARAERARQAQVTEQKRQQLMKKELAWL
+RRGAPARTSKPKFRIEAANAIIADVPEPRDTVSLAKTATARLGKDVIDLEDVTLTLGDRT
+ILDDVTLRLAPGERLGVVGVNGAGKSTLLRLLDGRLQPDSGRMKRGKTVVSATLTQDVKE
+LDEVADLRVAEVMAREGSAFQVGDREMSPGQLLEMLGFGPTRQWTAVSELSGGERRRLQL
+LRLLVGEPNVLMLDEPTNDLDTDTLAAVEDVLDGWPGTLVVVSHDRYLLERVTDHQVALL
+GDGRVRDLPGGVDQYLELRVLMDDAGGAAPAPGSSRGRGDAQGTCAGMVVDIPEVSEAER
+RQARKDMARLERQMQRLRESRGGIEARMAELGQAQKYDELGAATAELTAVDAELEDLEEQ
+WLEAAERDA*
+>NZ_CP097650.1_472
+MAHLLGAENIGIAFGTRTVLEGLSLGVDEGDRIGLVGRNGDGKSTLMRILAGLQEPDTGR
+VTRRGGVRVGVLDQQDRLDPEHTVRQAVVGDVDDHVWASDPKARDVLGGLLDGFDLDQPV
+RGLSGGQRRRVALARLLAGDDDVLFLDEPTNHLDVEGVAWLARHLKQRWRPTDGGLVVVT
+HDRWFLDEVCTRTWEVHDATVDPFDGGYAAWVLARAERSRQAAVTEQKRQQLVKKELAWL
+RRGAPARTSKPKFRIEAANAIIQDVPAPRDSVSLAKMATARLGKDVLDLEHVSLTLGEKP
+ILDDVTLRLAPGERLGVVGVNGAGKSTLLRLLDGRIAPDSGRVKRGKTVVSATLTQDVKE
+LDDVAHLRVAEVMAREGSSFQVGDREMSSGQLLEMLGFGTSRQWTQVSELSGGERRRLQL
+LRLLVGEPNVLMLDEPTNDLDTDTLAAVEDVLDGWPGTLVVVSHDRYLLERVTDHQVALL
+GDGKVRGLPGGVDQYLELRAAMDDAGGPARGAGAARGRNDVVGTCAGMGGPEEDTGPTEA
+ERRLARKEMARLEKQMTRLRDRRSGLEARMAELGQAQDFDALTAASADLKDLDAQLDVLE
+EEWLQAAELAEGD*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000531.fa

@@ -0,0 +1,45 @@
+>NZ_CP042169.1_500
+MRITETAIPGLLVLDLDVHGDNRGWFKENWQREKIRALAAEHPRLAALAPVQNNISFNDA
+VGTTRGIHAEPWDKYVAVAHGRIFGAWVDLREGPSFGAVATVELGPEKAVFVPRGVGNSY
+QTLEPDTAYTYLVNDHWSADAQGRYTFLNLADPTAAIAWPIPLEDAELSDKDRAHPMLAD
+VTPMPSAPILVLGAGGQLGRALVARAEAAGIPVEAHGRDTWDMTDPASWPREHFRGLRAV
+VNASAMTAVDAAETPEGRAQAWAVNAAAVAELARRCTKAGVPLAHVSTDYVFDGALPVGQ
+EHPVDHPLAPLGVYGQSKAAGEAAVRTVPRHWIVRTSWVIGEGKNFVATMASLAERGIDP
+AVVADQHGRLTFADDLADALLHLVTTDAPTGTFHMTNSGDVVTWHDVARWVFEDTGHDAA
+RVSATTTAAYLAGKEGVAPRPTNSALDLGPLAAVGYTAPDQRERLRDHLTEFKAGTC*
+>NZ_CP033200.1_231
+MRITETAIPGLLVLDLDVHGDNRGWFKENWQREKIRALAAGHPRLASLAPVQNNISFNDA
+VGTTRGIHAEPWDKYVAVAHGRIFGAWVDLREGPSFGAVATVELGPEKAVFVPRGVGNSY
+QTLEPDTAYTYLVNDHWSADAQGQYTFLNLADPTAAIAWPIPLEDAELSDKDRAHPMLAD
+VTPMPPAPILVLGAGGQLGRALVVRAEAAGIPVEAHGRDTWDMTDPASWPREHFRGLRAV
+VNASAMTAVDAAETPEGRAQAWAVNATAVAELARRCTEAGVPLAHVSTDYVFDGTLPVGQ
+EHPVDHPLAPLGVYGQSKAAGEAAVRTVPRHWIVRTSWVIGEGKNFVATMASLAERGIDP
+AVVADQHGRLTFADDLADALLHLVTTDAPTGTFHMTNSGDVVTWHDVARWVFEDTGHDAG
+HVSATTTAAYLAGKEGVAPRPTNSALDLGPLAAVGYTAPDQRERLRTYLRR*
+>NZ_CP040019.1_2381
+MKITETAIPGLLVIDLDVHGDNRGWFKENWQREKIRALAAEHPRLATLAPVQNNISFNDA
+VGTTRGIHAEPWDKYVAVAHGRIFGAWVDLREGPSFGAVATVELGPEKAVFVPRGVGNSY
+QTLEPDTAYTYLVNDHWSADAQSQYTFLNLADPTAAIAWPIPLEEAELSDKDRAHPMLAD
+VTPMPPAPILVLGAGGQLGRALVARAEAAGIPVEAHDRTTWDLEDPDSWPREHFRGLRAV
+VNASAMTAVDAAETPEGRAQAWAVNATAVAELARRCAEAGVPLAHVSTDYVFDGTLPVGQ
+EHPVDHPLAPLGVYGQSKAAGEAAVRTVPRHWIVRTSWVIGEGRNFVATMASLAERGIDP
+AVVDDQHGRLTFADDLADALLHLVTTDAPTGTFHMTNSGDVVTWHDVARWVFEDTGHDAA
+RVSATTTAAYTAGKEGVAPRPTNSALDLGPLAVVGYTAPDQRGRLRDHLSELTGDAR*
+>NZ_CP083691.1_2260
+MKITETAIPGLLVLDLDVHGDNRGWFKENWQREKIRALAAEHPRLASLAPVQNNISFNDA
+VGTTRGIHAEPWDKYVAVAHGRIFGAWVDLREGPSFGAVATVELGPEKAVFVPRGVGNSY
+QTLEPDTAYTYLVNDHWSADAQGQYTFLNLADPTAAIAWPIPLEDAELSDKDRAHPMLAD
+VTPMPPAPILVLGAGGQLGRALVARAEAAGIPVEAHGRDTWDMTDPASWPREHFRGLRAV
+VNASAMTAVDAAETPEGRAQAWAVNATAVAELARRCTEAGVPLAQVSTDYVFDGTLPVGQ
+EHPVDHPLAPLGVYGQSKAAGEAAVRTVPRHWIVRTSWVIGEGKNFVATMASLAERGIDP
+AVVADQHGRLTFADDLADALLHLVTTDAPTGTFHMTNSGDVVTWHDVARWVFEDTGHDAA
+RVSAATTAEYMAGKEGAAPRPTNSALDLGPLAAVGYTAPDQRERLRDHLSEAAGGTR*
+>NZ_CP097650.1_500
+MRITETAIPGLLVLDLDVHGDNRGWFKENWQREKIRALAAEHPRLASLAPVQNNISFNDA
+VGTTRGIHAEPWDKYVAVAHGRIFGAWVDLREGPSFGAVATVELGPEKAVFVPRGVGNSY
+QTLEPDTAYTYLVNDHWSADAQGQYTFLNLADPTAAIAWPIALEDAELSDKDRAHPMLDD
+VVPMPPAPILVLGAGGQLGRALVARAEAAGIPVEAHGRDTWDMADPASWPREHFRGLRAV
+VNASAMTAVDTAETTEGRAQAWAVNATAVAELARRCTEAGVPLAHVSTDYVFDGALPVGQ
+EHPVDHPLAPLGVYGQSKAAGEAAVRTVPRHWIVRTSWVIGEGKNFVATMASLAERGIDP
+AVVADQHGRLTFADDLADALLHLVTTDAPTGTFHMTNSGDVVTWHDVARWVFEDTGHDAA
+RVSATTTAAYLAGKEGVAPRPTNSALDLGPLAAVGYTAPDQRERLRDHLTEFKAGTC*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000534.fa

@@ -0,0 +1,20 @@
+>NZ_CP042169.1_507
+MAFSAQQSIPHPPAAVAAALASEDFHRSVVESFGGSLVSFSVEGSPEGPMTVTAVRSLPA
+DRIPDRVPDMARKLIGSALQVEQVERWDAPAADGSRAGTTTITVPSAKATADGALRLTAA
+GEGSQFSVDGTLVCRIPLVGSKLAAKAEPMVGKVVNRQARALSSWLERDGGAARG*
+>NZ_CP033200.1_237
+MAFSAQQSIPHPPAAVAAALASEDFHRSVVESFGGSLVSFSVEGSPEGPMTVTAVRSLPA
+DRIPDRVPDMARKLIGSALQVEQVERWDAPAADGSRAGTTTITVPSAKATADGSLRLTAA
+GEGSQFSVDGTLVCRIPLVGSKLAAKAEPMVGKVVDRQARALSSWLERDGGAARS*
+>NZ_CP040019.1_2377
+MAFSAQQSIPHPPAAVAAALASEEFHRSVVEQLGGSLVSFRVEGSPEGPMTVTTVRSAPA
+DRLPEMARKFIGSSLQVEQVERWEAPAADGSRVGTTTITVPAAKATAEGAQRLTAAGEGS
+QYSVDGTVTCKIPLVGSKLAAKAEPMVGKVVNRQARALTSWIGRDGGAAGA*
+>NZ_CP083691.1_2255
+MAFSAQQTIPHPPAAVAEALFSEDFHRSVAESLGGGLVSFARQDQADGGVELTIVRSGPT
+DRLPDMVRKVVGENLNIEQVERWSAPAADGSRTGTTTIRVPKAKATAEGTLRLAAAPAGT
+EYGVNGDLQVKIPLVGSKMAQMAEPMVGKVVARAGREVSAWIDRGGRG*
+>NZ_CP097650.1_507
+MAFSAQQPIPHPPSAVAAALASEDFHRSVVESFGGSLVSFSVEGSPEGPMTVTAVRSLPA
+DRIPDRVPDMARKLIGSALQVEQVERWDAPAADGSRTGTTTITVPSAKATADGSLRLTAA
+GEGSQFSVDGTLVCRIPLVGSKLAAKAEPMVGKVVNRQARALSSWLERDGGAARG*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000546.fa

@@ -0,0 +1,45 @@
+>NZ_CP042169.1_519
+MSHSTPPVNPGAPTDLTSDAVATAEEVPRSRVIIASLVGTSIEFYDFYIYATAAVSVFPL
+IFFAGGDDNTALLASMATFGAAFIARPLGAVVFGHLGDRVGRKTTLIGSLLTMGIATFLI
+GLLPTYFQIGLWAPAMLTLLRFFQGLGLGGEWSGAALLATEYAKDGKRAQAAMWPQLGAP
+IGFLLANGLFLALVLGFDHDSTNPVLDGPFLTWVWRVPFLLSIVMVAVGLYVRVKLEETP
+VFQRALDRDQRVKAPLSEVFRRNWWELILGTFVMYATYVLFYLMTTWILSYAIGKPANGF
+LGVPYAEFLVLQLVGILFFAAFVPVSGLLADRFGRRPTLIVISVLMVLFGLSFGLWLSPE
+NMGVGAELNGPLMVAFLATGMTLMGLTFGPMSAVLPELFPTNTRYTGSGIAYNVSSILGA
+ALTPFIAAWLVQKFDVSYVGYYLAAASAITVIALVLSPETRHTDLDTVTSARERRAAR*
+>NZ_CP033200.1_252
+MSHSTPPVNPGAPTDLTSDAVATAEEVPRSRVIIASLVGTSIEFYDFYIYATAAVSVFPL
+IFFAGGDDNTALLASMATFGAAFIARPLGAVVFGHLGDRVGRKTTLIGSLLTMGIATFLI
+GLLPTYFQIGLWAPAMLTLLRFFQGLGLGGEWSGAALLATEYAKDGKRAQAAMWPQLGAP
+IGFLLANGLFLALVLGFDHDSTNPVLDGPFLTWVWRVPFLLSIVMVAVGLYVRVKLEETP
+VFQRALDRDQRVKAPLGEVFRRNWWELILGTFVMYATYVLFYLMTTWILSYAIGKPANGF
+LGVPYAEFLVLQLVGILFFAAFVPVSGLLADRFGRRPTLIVISVLMVLFGLSFGLWLSPE
+NMGVGAELNVPLMLAFLATGMTLMGLTFGPMSAVLPELFPTNTRYTGSGIAYNVSSILGA
+ALTPFIAAWLVQKFDVAYVGYYLAAASAITVIALALSPETRHTDLDTVTSARERRAAR*
+>NZ_CP040019.1_2362
+MSRTTTPADGTAAGLEAAAEVPRGRVITASLVGTSIEFYDFYVYATAAVSVFPLIFFPGD
+DQTTALLASFAVFGTAFVARPIGSVLFGHFGDIMGRKVTLIGSLLTMGIATFLIGLLPTA
+FQIGLWAPAMLVVLRFCQGLGLGGEWSGAALLATEYAAEGKRARAAMWPQLGAPIGFFLA
+NGLFLALVIGFGHDSTNPDHDGAFLNWVWRLPFLLSIVMVAVGLYVRVKLEETPVFQRAI
+ANDTRVKAPLGEVFKRNWWELILGTFIMYATYVLFYLMTTWILSYAIGKTENGMLGVPYA
+EFLVLQLIGILFFAAFVPASGWLADRFGRKPTLLTVSALMVLFGLSFGLWLSAERMGTGA
+GVNVPLMLAFLAVGMALMGLTFGPMSAVLPELFPTNTRYTGSGISYNVSSILGAALTPFL
+AAWLVKEYGVAYVGYYLAAASVITMIALALAPETRHTDLDGVTSARERRAASV*
+>NZ_CP083691.1_2240
+MSHTTARSAEAPSVEDVPKSRVILASLVGTSIEFYDFYVYATAAVSVFPLIFFPGDDPTT
+ALLASFAVFGTAFVARPIGSILFGHFGDRMGRKVTLIGSLLTMGIATFLIGLLPTAFQIG
+LWAPAMLVVLRFCQGLGLGGEWSGAALLATEYADHGKRARAAMWPQLGAPIGFLLANGLF
+LILVRAFGHDSTNPQLEGSFLTWVWRVPFLLSIVMVAVGLYVRVKLEETPVFQRALEDDT
+RVKAPLGEVFKRNWWELILGTFVMYATYVLFYLMTTWILSYAIGKTQNGMLGVKYADFLV
+LQLVGILFFAAFVPVSGWLADRFGRKPTLLVVSGLMVVFGLSFGAWLSPAAMGQGDALNV
+PSMLAFLAVGMALMGLTFGPMSAVLPELFPTNTRYTGSGIAYNVSSILGAALTPFLAGWL
+VKEFGVATVGWYLAIASVITMAALALSPETRHADLHEVTSARERRAAAR*
+>NZ_CP097650.1_522
+MSHSTPPVNPGAPTDLTSDAVATAEEVPRSRVIIASLVGTSIEFYDFYIYATAAVSVFPL
+IFFAGGDDNTALLASMATFGAAFIARPLGAVVFGHLGDRVGRKTTLIGSLLTMGIATFLI
+GLLPTYFQIGLWAPAMLTLLRFFQGLGLGGEWSGAALLATEYAKDGKRAQAAMWPQLGAP
+IGFLLANGLFLALVLGFDHDSTSPVLDGPFLTWVWRVPFLLSIVMVAVGLYVRVKLEETP
+VFQRALDRDQRVKAPLGEVFRRNWWELILGTFVMYATYVLFYLMTTWILSYAIGKPANGF
+LGVPYAEFLVLQLVGILFFAAFVPVSGLLADRFGRRPTLIVISVLMVLFGLSFGLWLSPE
+NMGVGAELNVPLMLAFLATGMTLMGLTFGPMSAVLPELFPTNTRYTGSGIAYNVSSILGA
+ALTPFIAAWLVQRFDVSYVGYYLAAASAITVIALALSPETRHADLDTVTSARERRAAR*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000632.fa

@@ -0,0 +1,33 @@
+>NZ_CP042169.1_682
+MTRSRRNVGGGAAHRSETTGRSGSASGASAFDDARDSDVGRMWLDLAGAPEPTSSDADAS
+DAARDAAPARDAGAPAEDVPDPAPGAAPDLGALLTRASDLPSPAPGAGPRSLPWSGREDT
+RADTERRGRRRAPAKRSGRTRPREDGRAPAEPAPQTDRPRRRPGPAPLPTAPREREEAAR
+EVVLRQLALGPRSRGQLERKLAERQAEPELIERVLDRFEEVRLVDDAAFAEVWVRSRHRS
+KGLARRALGHELQQKGVDREIAAEALEAIDGEDERAAALDLVRRRLRGRTVPGGASPEAR
+AERDKVTRRLVGMLGRKGYGGGLAFAVVKEVLAEHEE*
+>NZ_CP033200.1_425
+MTRSRRNVGGGAAHRSETTGRSGSASGASAFDDARDSDVGRMWLDLAGAPEPTSSDADAA
+RDAVPARDAGTPAGDGSDPAPGAAPDLGALLTRASDLPSPAPGAGPRALPWSGREDTRAD
+TERRGRKRATTPPRRGRPRDEGRPAVDPRPAVETDRPRRRPGPAPLPTAPREREEAAREV
+VLRQLALGPRSRGQLERKLAERQAEPELIERVLDRFEEVRLVDDAAFAEVWVRSRHRSKG
+LARRALGHELQQKGVDREIAAEALEAIDGEDERTAALDLVRRRLRGRTVPGGASPEARAE
+RDKVTRRLVGMLGRKGYGGGLAFAVVKEVLAEHEE*
+>NZ_CP040019.1_2208
+MTRARRDAGGGAARRSERNGRSGAASGASAFDDARDTDAARMWLELAGVPEADAPAAARS
+VDEPPAAPTDGPDDPPLATAENGSSAAPSGPAAAPDEAGPPDLGSLLGRASDLPSPAPGA
+AARVLPWSADARPERGGRGARGTSSEARRARRRTARLAAADVASAPEAASTPEEANARED
+ARPRRRPGPAPLPAEPREREEAAREVVLRQLALGPRSRGQLEAKLADREAEPELIARVLD
+RFEEVRLVDDAAFAEVWVRSRHRSKGLARRAIGHELRQKGVDRDVAAEALEAIDGEDERA
+AALELVRRRLRGRRVPAGNGPHARAERDKVTRRLVGMLGRKGYGGGLAFAVVKEVLGELE
+E*
+>NZ_CP083691.1_2076
+MPEDPREREEAARQVVLRQLAMGPRSRRQLERKLADREAEPELVERVLDRFEEVSLVDDA
+AFAEVWVRSRARGKRLSRRAISRELHDKGVDRDVAEEALAAIEPEDERQAALELVRSKMR
+GRPAPAADGPEGRAERDKVTRRLVGMLGRKGYGPGLAFGVVKEVLAELDEA*
+>NZ_CP097650.1_648
+MTRSRRNVGGGAAHRSETTGRSGSASGASAFDDARDSDVGRMWLDLAGAPEPTSSDADAA
+RDAVPARDAGTPAGDVPDPAPGVAPDLGALLTRASDLPSPAPGAGPRTLPWSGREDTRAD
+IERRGRKRATTPPRRGRPRDEGRPAVDPRPAVETDRPRRRPGPAPLPTAPREREEAAREV
+VLRQLALGPRSRGQLERKLAERQAEPELIERVLDRFEEVRLVDDAAFAEVWVRSRHRSKG
+LARRALGHELQQKGVDREIAAEALEAIDGEDERAAALDLVRRRLRGRTVPGGASPEARAE
+RDKVTRRLVGMLGRKGYGGGLAFAVVKEVLAEHEE*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000639.fa

@@ -0,0 +1,65 @@
+>NZ_CP042169.1_692
+MSGGAEEVGAGGAQPRTEHEREALRLLDAAVQATGGQHRAGQREMVLQVARALESRRHLL
+VQAGTGTGKSLAYLIPAIQHAMTQEDPVVVATATLALQAQIMKRDAPRLVEALKDELPRE
+PVVALVKGRSNYLCRHKVDGGYPGDEGEEALFTVADDGGMIGSATDGAAGPSSLLGKEVM
+YLRAWADQTETGDRDDLEVPVTDRAWRQVSVSAVDCLGASRCPQAEECFSERARADAADA
+DVVVTNHAMLAISAFEGLAVLPAYSAVVVDEAHELQDRVTGAVTGQLSGSIVHGAATSLR
+RHTTVAVEDLIEAGAALDRAFTDTPSGLIAAGPDEVQEQALTGVLTAARQCLSDLGQDKD
+KEADADGGRQMARSRILEVLEVVERMLAARPEADFPEVLWATRPGHFEPGVGWQPGDETD
+PPQLYVAPLSVAGKLREGLFGKATTVLTSATLTVGSGERRFDSVAGDVGLAGPDAPKFEA
+LDVGSPFDYPRQGVLYVARHLPRPGRTASPESLDELEALLRASRGGALGLFSSRRAAEDA
+AAEMRRRLGPKTTILCQGDATLSALVRQFSEEPDTSLFGTMSLWQGVDVPGNSLRLVVID
+RIPFPRPDDPLSQARTRDVARHGGNGFMRISATHAAVRMAQGAGRLVRSVTDRGVVAVLD
+PRLATERYGGYITSALPDFWRTTDRDVVRGVLARLASGD*
+>NZ_CP033200.1_432
+MSEEEQEAGAGGAQPRTEHEREALRLLDAAVQATGGQHRAGQREMVLQVARALESRRHLL
+VQAGTGTGKSLAYLIPAIQHAMTQEDPVVVATATLALQAQIMKRDAPRLVEALKDELPRE
+PVVALVKGRSNYLCRHKVDGGYPGDEGEEALFTVADDGGVIGSATDGAAGPSSLLGKEVM
+YLRAWADQTETGDRDDLEVPVTDRAWRQVSVSAVDCLGASRCPQAEECFSERARADAADA
+DVVVTNHAMLAISAFEGLAVLPAYSAVIVDEAHELQDRVTGAVTGQLSGSIVHGAATSLR
+RHTTVAVEDLIEAGAALDRAFTDTPSGLIAAGPDEVQEQALTGVLTAARQCLSDLGQDKD
+KEADADGGRQMARSRILEVLEVVERMLAARPEADFPEVLWATRPGHFEPGVGWQPGDETD
+PPQLYVAPLSVAGKLREGLFGKATTVLTSATLTVGSGERRFDSVAGDVGLAGPDAPKFEA
+LDVGSPFDYPRQGVLYVARHLPRPGRTASPESLDELEALLRASRGGALGLFSSRRAAEDA
+AAEMRRRLGPKTTILCQGDATLSALVRQFAEEPDTSLFGTMSLWQGVDVPGNSLRLVVID
+RIPFPRPDDPLSQARTRDVARHGGNGFMRISATHAAVRMAQGAGRLVRSVTDRGVVAVLD
+PRLATERYGGYITSALPDFWRTTDRDVVRGVLARLASGD*
+>NZ_CP040019.1_2199
+MSGAGTEGTTPAGEGAQPRTDHEREALRLLDAAVEATGGQQRAGQREMVLQVARALESRR
+HLLVQAGTGTGKSLAYLIPALQHAMTQEDPVVVATATLALQAQIMKRDAPRLVEALKDEL
+PREPVVALVKGRSNYLCRHKVDGGYPGDEGEEALFTVADDGGLLGSAADGTGGPSSLLGK
+EVMYLRAWADQTETGDRDDLDVPVTDRAWRQVSVSAIDCLGASRCPMAEECFSERARADA
+ADADVVVTNHAMLAISAFEGLAVLPAYSAVVVDEAHELQDRVTGAVTGQLSGSIVHGAAT
+SLRKHTTVAVEDLMEAGAGLDRAFTDAPSGLLAAGPDEVQEQALNAVLAAARQCLSDLGQ
+DKDKEADADGGRQMARSRVLEVLEVVERMLAARPEADFPEVLWATRPGHFEPGVGWQPGD
+ESDPPQLFVAPISVAGKLREGLFGKATTVLTSATLTVGAGERRFDSVAGDVGLAGPDAPR
+FEALDVGSPFDYPRQGVLYVARHLPRPGRTASPESLDELEALLRASGGGALGLFSSRRAA
+EDAAAEMRRRLGPKATVLCQGDATLSALVRQFAEEPDTSLFGTMSLWQGVDVPGNSLRLV
+AIDRIPFPRPDDPLSQARTRDVARHGGNGFMRISATHAAVRMAQGAGRLVRSVHDRGVVA
+VLDSRLATERYGGYITSALPDFWRTTDRAVVLGVLGRLAETGS*
+>NZ_CP083691.1_2067
+MTDSTTGPAGAVPTTDREEEALRLLDVVVEATGGQQRAGQREMVLQVARALESRRHLLVQ
+AGTGTGKSLAYLIPALQHAMDQEDPVVVATATLALQAQIMKRDAPRLVQALAGELPREPV
+VALVKGRSNYLCRHKVDGGYPGDEGEETLFEVADDGGLIGSGEDGEPSSPLGKEVMYLRA
+WADVTETGDRDDLEVPVTDRAWRQVSVNAVDCLGATRCPLAEECFSERARADAADADVVV
+TNHAMLAISAFEGLAVLPAYSAVIVDEAHELQDRVTGAVTGQLSGSIVHGAATSLRRHTS
+VAVEDLAQAAAGLDRAFTDTPSGLIQGGPDDVQEQALTAVLSAARQCFSDLGKDKEGEAD
+AGRQMARSRLLEVVEVAERMLAAHPEADFPEVLWATRPGRFEPGSGWQPGDEADPPQLYV
+APISVAGRLREGLFGKATTVLTSATLTVGQGERRFDSVAGDVGLAGPDAPRFTALDVGSP
+FDYPRQGVLYVARHLPKPGRTASPESLDELEALLRASNGGALGLFSSRRAAEDAAEHMRR
+RLGRGHTVLCQGDATLSALVRQFADEPDTSLFGTMSLWQGVDVPGPSLRLVVIDRIPFPR
+PDDPLSQARTRDVARHGGNGFMRVSATHAAVRMAQGAGRLVRSVEDRGVVAVLDSRLATE
+RYGGYITSALPDFWRTTDRAVVRGVLERLAREAH*
+>NZ_CP097650.1_655
+MSEEEQEAGAGGAQPRTEHEREALRLLDAAVQATGGQHRAGQREMVLQVARALESRRHLL
+VQAGTGTGKSLAYLIPAIQHAMTQEDPVVVATATLALQAQIMKRDAPRLVEALKDELPRE
+PVVALVKGRSNYLCRHKVDGGYPGDEGEEALFTVADDGGVIGSATDGAAGPSSLLGKEVM
+YLRAWADQTETGDRDDLEVPVTDRAWRQVSVSAVDCLGASRCPQAEECFSERARADAADA
+DVVVTNHAMLAISAFEGLAVLPAYSAVIVDEAHELQDRVTGAVTGQLSGSIVHGAATSLR
+RHTTVAVEDLIEAGAALDRAFTDTPSGLIAAGPDEVQEQALTGVLTAARQCLSDLGQDKD
+KEADADGGRQMARSRILEVLEVVERMLAARPEADFPEVLWATRPGHFEPGVGWQPGDETD
+PPQLYVAPLSVAGKLREGLFGKATTVLTSATLTVGSGERRFDSVAGDVGLAGPDAPKFEA
+LDVGSPFDYPRQGVLYVARHLPRPGRTASPESLDELEALLSASRGGALGLFSSRRAAEDA
+AAEMRRRLGPKTTILCQGDATLSALVRQFAEEPDTSLFGTMSLWQGVDVPGNSLRLVVID
+RIPFPRPDDPLSQARTRDVARNGGNGFMRISATHAAVRMAQGAGRLVRSVTDRGVVAVLD
+PRLATERYGGYITSALPDFWRTTDRDVVRGVLARLASGD*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000673.fa

@@ -0,0 +1,25 @@
+>NZ_CP042169.1_731
+MHNRRIRIAAVGDQLLAGAGDARAIGWWGRVLARTQAPDVELENYVLAVPHETTEDLNER
+WWGEASRRFSEETENRLVVALSDADLDLEATSTARSRLNLANVLDTASQRNIPVLVVGPT
+PTLDEQRNARLAELNAAYLDVADRRNHVYVDTFTPLVGHEQWRSDLASGQGRPGQAGHGL
+IAWLVLHRGWYQWLGLPEPTA*
+>NZ_CP033200.1_470
+MHNRRIRIAAVGDHLLAGAGDARAIGWWGRVLARTQAPDVELENYVLAVPHETTEDLNER
+WWGEASRRFSEETENRLVVALSDADLDLEATSTARSRLNLANVLDTASQRNIPVLVVGPT
+PTLDEQRNARLAELNAAYLDVADRRNHVYVDTFTPLVGHEQWRSDLASGQGRPGQAGHGL
+IAWLVLHRGWYQWLGLPEPTA*
+>NZ_CP040019.1_2132
+MNDRRIRIAAVGDHLLAGAGDARAIGWWGRVLARTQAPGVELENYVLAVPHETTEDLNER
+WWGEASRRYSEDTENRLVVALSDADLDLEASSTARSRLNLANVLDTASQRGIPVLVVGPT
+PTLDEERNARLAELNAAYLDVADRRSHVYVDTFTPLQGHEQWRADLAAGEGRPGQAGHGL
+IAWLVLHRGWYQWLGLPEPTA*
+>NZ_CP083691.1_2023
+MQNRRIRIAAVGDHILAGAGDPRSIGWWGRVLARTAAPEVTLENYVLAVPHETTEQLNER
+WWGEASRRFSESAENRLVVALSDADLDLEASSSARSRLNLANVLDTASQRGITALVVGPV
+PTLDEARNDRLADLNTAYQDVAARRGHLYVDAFTPLRTHEQWRADLAAGDGVPGQAGHGL
+IAWLVLHRGWYQWLGVPEPTA*
+>NZ_CP097650.1_694
+MHNRRIRIAAVGDHLLAGAGDARAIGWWGRVLARTQAPDVELENYVLAVPHETTEDLNER
+WWGEASRRFSEETENRLVVALSDADLDLEATSTARSRLNLANVLDTASQRNIPVLVVGPT
+PTLDEQRNARLAELNAAYLDVADRRNHVYVDTFTPLVGHEQWRSDLASGQGRPGQAGHGL
+IAWLVLHRGWYQWLGLPEPTA*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000695.fa

@@ -0,0 +1,50 @@
+>NZ_CP042169.1_756
+MRTPQPAPASPLAPAWLPAPGDPDALVPGLWAAGVDRAADGELTVQGLRASALAAEFGTP
+LLVVDEDDFRARARAFRKGFDAAFADLCGGADVYYAGKSMLTLSTARWAAEEGLRVDTAS
+GGELAIALAAGIDPAHIGLHGNNKSDAELRTALEAGVGRIIVDSLDELTHLAALAAEAGR
+RAPVMLRLTPGVHAHTHDFIATAHEDQKFGLSLAPASTDRDGNVAGRSPAAVAVAAALAA
+ESIELLGVHCHIGSQIFEAEGFGLAAGRVLEFLAEVKAEHGVELAELDLGGGHGIAYTAV
+DEPRPAAEIADALADDVQKTVERLGLACPRISLEPGRAISGPAGLTLYTVGVTKTVDVDA
+PDGGTAARRYVAVDGGMSDNPRPVLYDADYTAVSARRTSEAEPVLSRVVGKHCESGDILV
+RDVYLPADLGRGDLLAVPATGAYTHVMSSNYNALARPAVVAVSGGQARVIIRRETQEDLF
+ARETDPRLAR*
+>NZ_CP033200.1_496
+MRTPQPAPASPLAPAWLPAPGDPDALVPGLWAAGVDRAADGELTVQGLRASALAAEFGTP
+LLVVDEDDFRARARAFRKGFDAAFADLCGGADVYYAGKSMLTLSTARWAAEEGLRVDTAS
+GGELAIALAAGIDPAHIGLHGNNKSDAELRTALEAGVGRIIVDSLDELTHLAALAAEAGR
+RAPVMLRLTPGVHAHTHDFIATAHEDQKFGLSLAPASTDRDGNVAGRSPAAVAVAAALAA
+ESIELLGVHCHIGSQIFEAEGFGLAAGRVLEFLAEVKAEHGVELAELDLGGGHGIAYTAV
+DEPRPAAEIADALADDVQKTVERLGLACPRISLEPGRAISGPAGLTLYTVGVTKTVDVDA
+PDGGTAARRYVAVDGGMSDNPRPVLYDADYTAVSARRTSEAEPVLSRVVGKHCESGDILV
+RDVYLPADLGRGDLLAVPATGAYTHVMSSNYNALARPAVVAVSDGQARVIIRRETQEDLF
+AREADPRLAR*
+>NZ_CP040019.1_2107
+MTTPQPAPASPLAPAWLPAPGDPDALAPGLWAAGVDRAADGELTVQGLRASALAVEFGTP
+LLVVDEDDFRARARAFREGFDAAFADLCGGADVYYAGKSMLTLSTARWAAEEGLRVDTAS
+GGELAIALAAGVDPAHIGLHGNNKSDAELRTALEAGVGRIIVDSLDELEHLAALAAEAGH
+RAPVMLRLTPGVHAHTHDFIATAHEDQKFGLSLAPATTDRDGNVAGRSPAAVAVAAALAA
+ESIDLLGVHCHIGSQIFEAEGFGLAAGRVLEFLAEVKAEHGVELAELDLGGGHGIAYTAV
+DEPRPAAEIADALADDVQKTVERLGLACPRISLEPGRAISGPAGLTLYTVGVTKTVDADT
+PDGGTAARRYVAVDGGMSDNPRPVLYDADYTAVSAARTSDAQAVLTRVVGKHCESGDVLV
+RDVYLPEDLGRGDLLAVPATGAYTHVMASNYNALTRPAVVAVAGGRARVIIRRETQEDLF
+AREADPRLGR*
+>NZ_CP083691.1_1997
+MNAGSVNLEETVTETAPQSAHPLAPAWLPAPADPDALAPLVWSSGVARDAAGELAVQGVP
+ASVLAERFGTPVLVLDEDDFRARARAFREGFDAAFESLCGGADVYFAGKSMLTLSTARWA
+AEEGLRVDTASGGELAIALRAGVLPEHIGLHGNNKSAAELATALDAGVGRIIVDSVDELE
+FLAALAAERGQIAPVMLRVTPGVHAHTHDFIATAHEDQKFGLSLTPSATGRDGNEAGVAP
+AAVAVRTALQADSIRLLGLHCHIGSQIFEADGFGLAAERVLGFLAEVKDEHGVELPELDL
+GGGHGIAYTAVDEPRPAAEIADALADDVQKAVERLGLTCPRISIEPGRAISGPAGLTLYS
+VGVTKTVDVDAPDDGTASRRYVAVDGGMSDNPRPVLYDADYTAALASRTSDAAPALSRVV
+GKHCESGDILVRDVWLPEDVARGDLLAVPATGAYTHSMSSNYNALLRPAVVAVRDGEARE
+IVRRETLDDLLRREVDPQNPA*
+>NZ_CP097650.1_722
+MTTPQPAPASPLAPAWLPAPGDPDALVPGLWAAGVDRAADGELTVQGLRASALAAEFGTP
+LLVVDEDDFRARARAFREGFDAAFADLCGGADVYYAGKSMLTLSTARWAAEEGLRVDTAS
+GGELAIALAAGVDPAHIGLHGNNKSDAELRTALEAGVGRIIVDSLDELTHLAALAAEAGR
+RAPVMLRLTPGVHAHTHDFIATAHEDQKFGLSLAPASSDRDGNVAGRSPAAVAVAAALAA
+ESIDLLGVHCHIGSQIFEAEGFGLAAGRVLEFLAEVKAEHGVELAELDLGGGHGIAYTAV
+DEPRPAAEIADALADDVQKTVERLGLRCPRVSLEPGRAISGPAGLTLYTVGVTKTVDADA
+PDGGTAARRYVAVDGGMSDNPRPVLYDADYTAVSARRTSEAEPVLSRVVGKHCESGDILV
+RDVYLPADLGRGDLLAVPATGAYTHVMSSNYNALARPAVVAVSGGQARVIIRRETQEDLF
+AREADPRLAR*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000719.fa

@@ -0,0 +1,15 @@
+>NZ_CP042169.1_781
+MSVTGEPDLNDPFAPAGGGTSVLEREELRQEIEPGDHERFAHYVRKEKITESAVTGAPVI
+ALCGKVWVPGRDPNKFPVCPTCKEIYEGLREPQDGGDGDGGGKRGGWFGGRGRG*
+>NZ_CP033200.1_521
+MSVTGEPDLNDPFAPAGGGTSVLEREELRQEIEPGDHERFAHYVRKEKITESAVTGAPVI
+ALCGKVWVPGRDPNKFPVCPTCKEIYEGLREPQDGGDGDGGGKRGGWFGGRGRG*
+>NZ_CP040019.1_2082
+MSVTGEPDLTDPFSPAGGGTSVLEREQQLQDVEPGDHERFAHYVRKEKITESAVTGAPVI
+ALCGKVWVPGRDPQKFPVCPTCQEIYEGLREPQDGDDAGAGGGRRGGWFGGRGRG*
+>NZ_CP083691.1_1971
+MSISDPFQNDPLSPSGGGTSVLEREEQLQDVEPGDHERFAHYVRKEKIMESALSGEPVIA
+LCGKVWVPGRDPNKFPVCPLCQEIYDGLRDPQDGDDAGSGGGRRGGFFGRGRG*
+>NZ_CP097650.1_747
+MSVTGEPDLNDPFAPAGGGTSVLEREELRQEIEPGDHERFAHYVRKEKITESAVTGAPVI
+ALCGKVWVPGRDPNKFPVCPTCKEIYEGLREPQDGGDGDGKRGGWFGGRGRG*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000758.fa

@@ -0,0 +1,30 @@
+>NZ_CP042169.1_836
+MSGVDAQSPAAAGGRPTRTARAPYVIPGVIVRPAMRALVRQVWEGTEHLPETGAILAVNH
+ISEVDPLSVAHMVYNQGLLPTFLAKAELWKVPVLKQVLEATRMIPVERTRDGGRSLAAAR
+EAVATGRAIIVYPEGTVTRDPDGWPMAGRNGAVRLALQTGAPLIPVGQWGIQELLPYGGR
+SLRVLPRKTARIRVGAPVDLADLRDRPVTAGTLREGTGRMMGAITDLVAELRGEPAPEGR
+WDPTAGARVAEA*
+>NZ_CP033200.1_567
+MSGVDAQSPAAAGGRPTRAARAPYVIPGVIVRPAMRALVRQVWEGTEHLPETGAILAVNH
+ISEVDPLSVAHMVYNQGLLPTFLAKAELWKVPVLKQVLEATRMIPVERTRDGGRSLAAAR
+EAVATGRAIIVYPEGTVTRDPDGWPMAGRNGAVRLALQTGAPLIPVGQWGIQELLPYGGR
+SLRVLPRKTARIRVGAPVDLADLRDRPVTAATLREGTGRMMAAITDLVAELRGEPAPEGR
+WDPTTGARVTGA*
+>NZ_CP040019.1_2031
+MSTVDPQTPAPAAGRPSRAARAGYVIPAAIVRPALRGLVSQVWEGTENLPETGAILAVNH
+ISELDPLSVAHMVYNQGLLPTFLAKAELWKVPGFKQALQATRTIPVERSRDGGRSLAAAR
+EALATGRAIIVYPEGTVTRDPDGWPMAAQSGAVRLALQTGAPLIPVGQWGIQELLPYGGR
+APRPFPRKTARIRVGTPVDLDDLRGGPLTATALRAGTERMMDAITAIVADLRGEPAPAGR
+WDPRTGRREPGA*
+>NZ_CP083691.1_1922
+MNDGERPIAQPSRGLRRGFVAPAAVVRPALRALVRQEWLHAERIPRTGAILAVNHISELD
+PLSVAHMVYNQGLLPAVLAKAELWKVPVLRRVLQSTRMIPVERSRDGGRSLAAAQAALDE
+GRVIIVYPEGTVTRDPEGWPMSARSGAVRLALQTGAPLIPVGQWGMQELLPYPGFRLSPF
+PRKTARVLVGEPVDLDDLRGGPLTAAVLRVGTERMMDAVTELVAQLRGEPAPAWRWDLRT
+GRREGAA*
+>NZ_CP097650.1_794
+MSGVDAQSPAAAGGRPTRAARAAYVIPGVIVRPAMRALVRQVWEGTEHLPETGAILAVNH
+ISEVDPLSVAHMVYNQGLLPTFLAKAELWKVPVLKQVLEATRMIPVERTRDGGRSLAAAR
+EAVATGRAIIVYPEGTVTRDPDGWPMAGRNGAVRLALQTGAPLIPVGQWGIQELLPYGGR
+SLRVLPRKTARIRVGAPVDLADLRDRPVTAATLREGTGRMMAAITDLVAELRGEPAPEGR
+WDPTAGARVIGA*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000790.fa

@@ -0,0 +1,30 @@
+>NZ_CP042169.1_882
+MTARRGGGRPTVRAGLDVEAGLAAPALAARGADRVLVAGMDEVGRGALAGPVVVGVCAAW
+LPAAGQIPPVRDSKALTDRRRRALVPQIEDWAAGVALGEAGPAEIDALGISAALGLAGRR
+AWAALCAAVGQEPVALVLDGRDDWLSRSDPDAGPAPAPRPLPPEPTMLVRAEDRCATVAA
+ASIAAKVARDDVMIALDAAHPGYGWAGNKGYGSAAHRAALAERGASEQHRRSWNLGLPGA
+PAQAPPTLFD*
+>NZ_CP033200.1_610
+MTARRGGGRPTVRAGLDVEAGLAAPALAARGADRVLVAGMDEVGRGALAGPVVVGVCAAW
+LPAAGQIPPVRDSKALTDRRRRALVPQIEDWAAGVALGEAGPAEIDALGISAALGLAGRR
+AWAALCAAVGQEPVALVLDGRDDWLSRSDPDAGPAPAPRPLPPEPTMLVRAEDRCATVAA
+ASIAAKVARDDVMIALDAAHPGYGWAGNKGYGSAAHRAALAERGASEQHRRSWNLGLPGA
+PAQAPPTLFD*
+>NZ_CP040019.1_1992
+MTGSERAPRAGARTAVRAGLDVEAGLAAPFLAAGGTDRVLVAGMDEVGRGALAGPVVVGV
+CAAWLPAEGEIPAVRDSKALTDRRRRALVPEIRAWAAAVALGEANPAEIDALGISAALGL
+AGRRAWAAVCAAAGQEPVALVLDGRDDWLTRSDPDAGPAPAPRPVPPVPTMLVKAEDRCA
+TVAAASIAAKVARDDTMIALHADHPAYGWAGNKGYGAAAHRAAILDHGAGEHHRRSWSLG
+LPAAPADEPPTLFD*
+>NZ_CP083691.1_1887
+MSPRPPVVRAGLDVEASLAEAAIGPGASALVAGMDEVGRGALAGPVTVGVCAARVPALGV
+VPAVRDSKALTDRRRRALASEIEAWAAGVVLGEASPAEIDRLGITRALALAGCRAWAGLL
+AALGEEPVALILDGSDDWLRHARGGGMDDVVTGPVPPAPHMMVKAEDRCATVAAASIAAK
+VGRDDAMIALSAAHPAYGWAGNKGYGAAAHRSALVELGVTEHHRRSWNLGVPGTGAEPDV
+LF*
+>NZ_CP097650.1_829
+MTARRGGGRPTVRAGLDVEAGLAAPALAARGADRVLVAGMDEVGRGALAGPVVVGVCAAW
+LPAAGQIPPVRDSKALTDRRRRALVPQIEDWAAGVALGEAGPAEIDALGISAALGLAGRR
+AWAALCAAVGQEPVALVLDGRDDWLSRSDPDAGPAPAPRPLPPEPTMLVRAEDRCATVAA
+ASIAAKVARDDVMIALDAAHPGYGWAGNKGYGSAAHRAALAERGASEQHRRSWNLGLPGA
+PAQAPPTLFD*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000848.fa

@@ -0,0 +1,35 @@
+>NZ_CP042169.1_955
+MRTDTPTLDAPGRAPGAATDDELRELDSGLDALQAVDSTRRTGLAGWDWSRVLLPVAAVV
+LLVAIWQAFAWLAGARGEPITGPGDVVGAFGTLWAQGLVQQAVATSVGRAVVGFALAVVV
+GVGLGLLLGQVSVLRRAFGPLLTALMVLPNVAWVPLAVLWFGLSDATAYFVMLTGAVPAV
+VAGLTTGTDQVPPQLRRAARVLGASRLETALLVVLPAALPAFVSGLRQGWAFAWRGLMAA
+EIIAVGGPMGVGLGTLLHEGRAESDLAVVLCAVLAILAVGVLVELTAFGPAERRMLRRRG
+LLEGSTR*
+>NZ_CP033200.1_679
+MRTDTPTLDAPGRAPGAATDDELRELDSGLDALQAVDSTRRTGLAGWDWSRVLLPVAAVV
+LLVAIWQAFAWLAGARGEPITGPGDVVGAFGTLWAQGLVQQAVATSVGRAVVGFALAVVV
+GVGLGLVLGQVGVLRRAFGPLLTALMVLPNVAWVPLAVLWFGLSDATAYFVMLTGAVPAV
+VAGLTTGTDQVPPQLRRAARVLGASRLETALLVVLPAALPAFVSGLRQGWAFAWRGLMAA
+EIIAVGGPMGVGLGTLLHEGRAASDLAVVLCAVLTILAVGVLVELAAFGPVERRMLRRRG
+LLEGSTR*
+>NZ_CP040019.1_1866
+MRTDTPTLDAPGRAPGAAADDELRELDSGLDALQAVDSARRTGLAGWDWSRVLLPVAAVV
+LLVAIWQVAAWLAGARGEPITGPGDVLGAFGALWAQGLVQQAVATSVGRAVVGFALAVVA
+GVGLGLLLAQVGVLRRAFGPLLTALMVLPNVAWVPLAVLWFGLSDATAYFVILTGAVPAV
+VAGLTTGTDQVPPQLRRAARVLGASRLETALLVVLPAALPAFVSGLRQGWAFAWRGLMAA
+EIIAVGAPMGVGLGTLLHQGRTESDLAVVLCAVLAILAVGVLVELTAFGPVERRMLRRQG
+LLEGSTR*
+>NZ_CP083691.1_1810
+MRTDTPTLDAPGRAPGAAADDELRELDSGLDALQAVDSTRRTGLAGWDWSRVLLPVAAVV
+LLVAIWQVAAWLAAARGEPITGPGDVLRAFGTLWAQGLVQQAVATSVGRAVVGFALAVVV
+GVGLGLLLGQVSVLRRAFGPLLTALMVLPNVAWVPLAVLWFGLSDATAYFVMLTGAVPAV
+VAGLTTGTDQVPPQLRRAARVLGASRLETALLVVLPAALPAFVSGLRQGWAFAWRGLMAA
+EIIAVGGPMGVGLGTLLHQGRAESDLAVVLCAVLAILAVGVLVELTAFGPVERRMLRRQG
+LLEGSTR*
+>NZ_CP097650.1_897
+MRTDTPTLDAPGRAPGAATDDELRELDSGLDALQAVDSTRRTGLAGWDWSRVLLPVAAVV
+LLVAIWQAFAWLAGARGEPITGPGDVLGAFGTLWAQGLVQQAVATSVGRAVVGFALAVVV
+GVGLGLVLGQVSVLRRAFGPLLTALMVLPNVAWVPLAVLWFGLSDATAYFVMLTGAVPAV
+VAGLTTGTDQVPPQLRRAARVLGASRLETALLVVLPAALPAFVSGLRQGWAFAWRGLMAA
+EIIAVGGPMGVGLGTLLHEGRAASDLAVVLCAVLTILAVGVLVELAAFGPVERRMLRRRG
+LLEGSTR*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000926.fa

@@ -0,0 +1,25 @@
+>NZ_CP042169.1_1065
+MTETDPVAERPRVHVGLTGGIAAGKSAVARVLQERGALLVDSDALARLVLEKGTDGLAAV
+QDEFGDRVITADGELDRVEMARIVFGDEGARQRLNRIVHPRIRAAARRIVAEAGPDAVVV
+QDVPLLVETGQADAFDLVIVVEAPLEERLRRMVEDRGMSRADAEARIAAQATDEQRRAVA
+DVVIVNDADLERLASVANQVWDRFLAPGAAEPSAD*
+>NZ_CP033200.1_794
+MTETDPVAERPRVHVGLTGGIAAGKSAVARVLQERGALLVDSDALARLVLEKGTDGLAAV
+QDEFGDRVITADGELDRVEMARIVFGDEGARQRLNRIVHPRIRAAARRIVAEAGPDAVVV
+QDVPLLVETGQADAFDLVIVVEAPLEERLRRMVEDRGMSRADAEARIAAQATDEQRRAVA
+DVVIVNDADLERLASVANQVWDRFLAPGAAEPSAD*
+>NZ_CP040019.1_1759
+MTESVPVADRPRVHVGLTGGIAAGKSAVARVLQERGALLVDSDALARLVLEKGTDGLAAV
+QDEFGDRVLTSDGELDRVALAHIVFSDPQARQRLNRIVHPRIRAAARRIVAAAGPDAVVV
+QDVPLLVETGQQDAFDLVIVVEAPLEERLRRMVEDRGMTPEDAQARIDAQATDDQRRAAA
+DVVIVNDADLERLASVANQVWDRFLAPDAAEPSAD*
+>NZ_CP083691.1_1649
+MTDAVTDVTLRPRLHVGLTGGIAAGKSAVAAELERCGALLVDSDALARLVLEPGTEGLAA
+VQDAFGDRVIAADGSLDRAALAQIVFADPAARQRLNGIVHPRVRRMAREIVAQAGPDAVV
+VQDVPLLVETGQADAFDLVIVVEAPAEERIRRMVEDRGMSREDALARMAAQATDEERAAV
+ADVVIVNDGDLDRLREITRRVWEGMAA*
+>NZ_CP097650.1_1013
+MTETDPVAERPRVHVGLTGGIAAGKSAVARVLQERGALLVDSDALARLVLEKGTDGLAAV
+QDEFGDRVITADGELDRVEMARIVFGDEGARQRLNRIVHPRIRAAARRIVAEAGPDAVVV
+QDVPLLVETGQADAFDLVIVVEAPLEERLRRMVEDRGMSRADAEARIAAQATDEQRRAVA
+DVVIVNDADLERLASVANQVWDRFLAPGAAEPSAD*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000936.fa

@@ -0,0 +1,35 @@
+>NZ_CP042169.1_1079
+MTSPLTGQLPLPPGMGSEGRGVGAGMSRPTARVTALGGGHGLSASLAALRHVAGHLTAIV
+TVADDGGSSGTIRREMAVLPPGDLRMALAALCDDTDWGRTWAHVMQHRFHSTEVPADQAT
+LDNHALGNLLIVALWELLGDPVDGLRWAGALLRAHGEVLPVSRVPLTIGGDVLSAGPDGR
+LRTRCVEGQVALAVAAFEGRVTDVRLSPSDAPATPEALSAIEMADWVVLGPGSLYTSVLP
+HLLMPDVRAALAATTARRLMVLNLRTGDQETTGLTHADHLKVLRSYAPDLRLDVVIADVD
+AVTDRAAVEAEAARMGARVAFSRVSSAQDPQVHDPLRLAVSIGEAMTH*
+>NZ_CP033200.1_808
+MTSPLTGQLPLPPGMGSEGRGVGAGMSRPTARVTALGGGHGLSASLAALRHVAGHLTAVV
+TVADDGGSSGTIRREMAVLPPGDLRMALAALCDDTDWGRTWAHVMQHRFRSTEVPADQAT
+LDNHALGNLLIVALWELLGDPVDGLRWAGALLRAHGEVLPVSRVPLTIGGDVLSAGPDGR
+LRTRCVEGQVALAVAAFEGRVTDVRLSPSDAPATPEALSAIELADWVVLGPGSLYTSVLP
+HLLMPEVRSALAATAARRLMVLNLRTGDQETTGLAHADHLKVLRSYAPDLRLDVVIADVD
+AVTDRAAVEAEAARMGARVAFSRVSSAQDPQVHDPLRLAVAIDEAMTH*
+>NZ_CP040019.1_1745
+MTSPLTGQLPLPPGVGTAVRGPAGGMARPAIRVTALGGGHGLSASLTALRHVAGHLTAIV
+TVADDGGSSGTIRREMAVLPPGDLRMALAALCDDTDWGRTWAQVMQHRFRSTEVDAEEAT
+LDNHALGNLLIVALWELLGDPVDGLRWAGALLRAHGEVLPVSRVPLTIGGDVLSAGPDGG
+LRTRRVEGQVALAVAAFEGRVTDVRLSPSDAPATPEALAAIELADWVVLGPGSLYTSVLP
+HLLMPEVCQALDATAARRLMVLNLRTGDQETTGLTHADHLRVLHSHAPDLRLDVVIADVD
+AVTDRAAVEAEAARMGARVAFSRVSSAQDPQVHDPLRLAVAIDEAMTD*
+>NZ_CP083691.1_1636
+MTGPVTGPSTSSLPLPPAAARGAWATTSGTVRPQVRVTALGGGHGLSASLAALRLVAGHL
+TAVVTVADDGGSSGTIRREMAVLPPGDLRMALAALCDDTDWGRTWAQVMQHRFRSTEVPE
+AEATLDGHALGNLLIVALWELIGDPVDGLRWAGALLRAHGEVLPVSRVPLTIGGDLLAED
+DAGRLVRRHVEGQVALAQAAHDGRVVDVRLSPADAPATPEALAAIELADWVVIGPGSLYT
+SVLPHLLMPEVRGALEVTTARRIFVLNIDTGTQETTGMTHADHLKVLREHAPGLQLDVVI
+ADADAVADRAAVVQEARRLGARVAFSRVAHAANRLAHDPLRLAVAIDEAMSS*
+>NZ_CP097650.1_1028
+MTSPLTGQLPLPPGMGSEGRGVGAGMSRPTARVTALGGGHGLSASLAALRHVAGHLTAIV
+TVADDGGSSGTIRREMAVLPPGDLRMALAALCDDTDWGRTWAHVMQHRFRSTEVPADQAT
+LDNHALGNLLIVALWELLGDPVDGLRWAGALLRAHGEVLPVSRVPLTIGGDVLSAGPDGR
+LRTRCVEGQVALAVAAFEGRVTDVRLSPSDAPATPEALSAIELADWVVLGPGSLYTSVLP
+HLLMPDVRAALAATTARRLMVLNLRTGDQETTGLTHADHLKVLRSYAPDLRLDVVIADVD
+AVTDRAAVEAEAARMGARVAFSRVSSAQDPQVHDPLRLAVAIDEAMTH*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000941.fa

@@ -0,0 +1,30 @@
+>NZ_CP042169.1_1084
+MAEQTTRVPLIAGNWKMNLDHLEAVTLVQRLTWLLSDADHDQEAVEVAVFPPFTGLRSVQ
+TLVTGDRLDLVYGAQDLSPEDAGAYTGDVSGAFLAALGCRYAIVGHSERRTLHGEDDALV
+ARKAAAALRHGLTPVICVGEGLEVRQAGRHVEHTLAQLEGSIAGLSAQDVAGVVVAYEPV
+WAIGTGEVAGPEDAQQMCAALRARVAALHGDDVAAGLRILYGGSVKSSSAPALLAQPDVD
+GALVGGASLDADEFAKIVRFDQA*
+>NZ_CP033200.1_813
+MAEQTTRVPLIAGNWKMNLDHLEAVTLVQRLTWLLTDADHDQEAVEVAVFPPFTGLRSVQ
+TLVTGDRLDLVYGAQDLSPEDAGAYTGDVSGAFLAALGCRYAIVGHSERRTLHGEDDALV
+ARKAAAALRHGLTPVICVGEGLEVRQAGRHVEHTLAQLEGSIAGLSAQDVAGVVVAYEPV
+WAIGTGEVAGPEDAQQMCAALRARVAALHGDDVAAGLRILYGGSVKSSSAPALLAQPDVD
+GALVGGASLDADEFAKIVRFDQA*
+>NZ_CP040019.1_1739
+MAETAARVPLIAGNWKMNLDHREAVTLVQRLAWLLTDADHDHEDVEVAVFPPFTDLRAVQ
+VLVTGDRLDVAYGAQDLSPEDSGAYTGDVSGAFLAALGCRYAIVGHSERRTIHGEDDALV
+ARKAAAALRHGLSPVVCVGEGLDVRQAGRHVAHTVAQLEGSLVGLSAEDVARTVVAYEPV
+WAIGTGEVAGAGDAQEMCAALRARVGELHGDDVAAGLRILYGGSVKSTSAPELLAQPDVD
+GALVGGASLDAEEFARIVRFDQA*
+>NZ_CP083691.1_1631
+MSVVQPVRVPLIAGNWKMNLDHQEAVTLVQRLGWLLGDADHEQGNVEAAVFPPFTDLRSV
+QTLVAADRIGVAYGAQDVSAEDSGAFTGEVSGAFLAKLGCAYAIVGHSERRTLHHEDDAL
+VARKAAAALRHGLVPVVCVGEGLDVRQAGRHVEHTVAQLRGSLDGLSSEDVARVVVAYEP
+VWAIGTGEVASAADAQEMCAALRADLAERHGAEVAERVRVLYGGSVKSSSAPELLAQPDV
+DGALVGGASLDADEFARIVRSDAAH*
+>NZ_CP097650.1_1033
+MAEQTTRVPLIAGNWKMNLDHLEAVTLVQRLTWLLTDADHDQEAVEVAVFPPFTGLRAVQ
+TLVTGDRLDLAYGAQDLSPEDAGAYTGDVSGAFLAALGCRYAIVGHSERRTLHGEDDALV
+ARKAAAALRHGLTPVICVGEGLEVRQAGRHVEHTLAQLEGSIAGLSAQDVAGVVVAYEPV
+WAIGTGEVAGPEDAQQMCAALRARVAALHGDDVAAGLRILYGGSVKSSSAPALLAQPDVD
+GALVGGASLDADEFAKIVRFDQA*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000950.fa

@@ -0,0 +1,30 @@
+>NZ_CP042169.1_1093
+MSTPVVDHRAPAGTGAHAGAAPLAARVLRQAGYETGTALRNGEQLLVTVVLPLLALVGVH
+VTGLLDAPGRSGLDVAVPGVLALAVISSAFTATAIATGFERRYDVLAALATTPLGTLGLV
+AGKALAVVALLLVQVSVIGGVGLALGWRPDPEGILPALVALALGAAAFTALGLLLAGTAR
+PEATLAVANLLWVLFGAVGGTVFPARVPGVDLLPSGALGTALRAALLDGAWSPVPLLVLT
+LWGAVAVAAALRWFRWRP*
+>NZ_CP033200.1_822
+MSTPVVDHRAPAGTGAHAGAAPLAARVLRQAGYETGTALRNGEQLLVTVVLPLLALVGVH
+VTGLLDAPGRSGLDVAVPGVLALAVISSAFTATAIATGFERRYDVLAALATTPLGTLGLV
+AGKALAVVALLLVQVSVIGGVGLALGWRPDPEGILPALVALALGAAAFTALGLLLAGTAR
+PEATLAVANLLWVLFGAVGGTVFPARVPGVDLLPSGALGTALRAALLDGAWSPVPLLVLT
+LWGAVAVAAALRWFRWRP*
+>NZ_CP040019.1_1730
+MSAPIAPGSAEPRTAGQVPEPGTAPHAGAAPLATRVLRQAAYETGTALRNGEQLLVTVVL
+PLLALVGVHVTGLLDEPGRSGLDVAVPGVLALAVISSAFTATAIATGFERRYDVLAALAT
+TPLGTLGLVAGKALSVVALLLVQVAVIGGVGLALGWRPEAAGILPAVVALALGAAAFTAL
+GLLLAGTARPEATLAAANLLWVLFGAVGGTVFPSRVPGVDLLPSGALGSALRAALVDGAG
+APIPLLVLALWCAVAVAAALRWFRWRP*
+>NZ_CP083691.1_1622
+MSAPAAPIPASHAGAAPLGARILAQARYETVTALRNGEQLLVTLVLPLLALVGVHVTGLL
+DAPGRNGLDLAVPGVLALAVISAAFTATAISTGFERRYDVLAALATTPLGTGGLVAGKAA
+AVAAVLLLQTIVIGGVGLALGWSPDPAGIPPAVVALLLGAAAFTALGLLLAGTARPEATL
+AVANLVWVLLGALGGTVFPSRWAWMDLLPSGALGTALRSALQDGAWAPSALAVLAAWTVM
+AVAAALRWFRWRP*
+>NZ_CP097650.1_1042
+MSTPVVDHRAPAGTGAHAGAAPLAARVLRQAGYETGTALRNGEQLLVTVVLPLLALVGVH
+VTGLLDAPGRSGLDVAVPGVLALAVISSAFTATAIATGFERRYDVLAALATTPLGTLGLV
+AGKALAVVALLLVQVSVIGGVGLALGWRPDPEGILPALVALALGAAAFTALGLLLAGTAR
+PEATLAVANLLWVLFGAVGGTVFPARVPGVGLLPSGALGTALRAALLDGAWSPVPLLVLT
+LWGAVAVAAALRWFRWRP*

Biomni/experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260520_114207/orthofinder_output/Results_May20/Orthogroup_Sequences/OG0000966.fa

@@ -0,0 +1,35 @@
+>NZ_CP042169.1_1112
+MTTLHGEYKVIGGKLVAADLSLADGRIATASINGDFYLEPDEALEDLNAAVAGLSADAEH
+RVIREAVERGLRPEAELFGVDAFAVASAVRRALGKATTWGDHEWEVIGPEPMPIALTVAL
+DEVLTRQVAEGRRKPTMRLWQWNEPAVVIGAFQSLANEVDPEGARRHGINVVRRISGGGA
+MFMEADNCVTYSMHVPSSLVDGLETAESYPFLDEWTMDALSRLGVHAFYQPLNDIATDQG
+KIGGAAQKRVGTAGLLHHVTMSYDIDADKMLEVLRIGREKLRGKGVTSAKKRVDPLRRQT
+GVSRAEIWETMMTTFEERYGARRVELDEATREEAEQLARTKFATPEWTARVP*
+>NZ_CP033200.1_841
+MTTLHGEYKVIGGKLVAADLSLADGRIATASINGDFYLEPDEALEDLNAAVAGLSADAEH
+RVIREAVERGLRPEAELFGVDAFAVASAVRRALGKATTWGDHEWEVIGPEPMPIALTVAL
+DEVLTRQVAEGRRKPTMRLWQWNEPAVVIGAFQSLANEVDPEGARRHGINVVRRISGGGA
+MFMEADNCVTYSMHVPSSLVDGLETAESYPFLDEWTMDALSRLGVHAFYQPLNDIATDQG
+KIGGAAQKRVGTAGLLHHVTMSYDIDADKMLEVLRIGREKLRGKGVTSAKKRVDPLRRQT
+GVSRAEIWETMMTTFEERYGARRVELDEATREEAEQLARTKFATPEWTARVP*
+>NZ_CP040019.1_1709
+MTTHHGEYKVIGGKLVAADLTIDDGRIAAASINGDFFLEPDEALEDLNAAVTGLSADAEH
+RVIQAAVEAGLREDAELFGVDAHAIATAVRRALGKATTWEDHEWEIIPPEPLPIALTVAL
+DEVLTRQVAEGRRRPTMRLWQWNEPAVVIGAFQSLANEVDPEGASRHGINVVRRISGGGA
+MFMEADNCVTYSLHVPRSLVDGLETAESYPFLDEWTMDALSRLGVQAFYQPLNDIATDQG
+KIGGAAQKRVGQDGLLHHVTMSYDIDADKMLEVLRIGREKLKGKGVASAKKRVDPLRRQT
+GVARPEIWETMMATFEERYGARRVELDDATRAEAEELARTKFGTQEWTARVP*
+>NZ_CP083691.1_1603
+MSTQTTHHGEFKVLGGKLVAADLEVQDGVIVRASVNGDFFLEPDDALEDINAALTGLPAD
+TEHHVLAERVRAGLRPEARLFGFDAEAVATAVRRAVGLATTWESHRWEILPPEPLPIEMN
+TALDQILTEDVAAGRRNPVMRLWQWTEPAVVIGAFQSLANEVDPDGVTRHGIHVVRRVSG
+GGAMFMEADNCVTFALSAPASLVDGIDTAESYPFLDEWVMEALRELGVQAFYQPLNDIAT
+DQGKIGGAAQKRFGATGLLHHVTMSYDIDADKMTEVLRIGREKLRGKGVASAKKRVDPLR
+RQTGVPREQIWETMMAVFERRYGARRVELDADTRARAEELARTKFSSPEWTARVP*
+>NZ_CP097650.1_1061
+MTTLHGEYKVIGGKLVAADLSLADGRIATASINGDFYLEPDEALEDLNAAVAGLSADAEH
+RVIREAVERGLRPEAELFGVDAFAVASAVRRALGKATTWGDHEWEVIGPEPMPIALTVAL
+DEVLTRQVAEGRRKPTMRLWQWNEPAVVIGAFQSLANEVDPEGARRHGINVVRRISGGGA
+MFMEADNCVTYSMHVPSSLVDGLETAESYPFLDEWTMDALSRLGVHAFYQPLNDIATDQG
+KIGGAAQKRVGTAGLLHHVTMSYDIDADKMLEVLRIGREKLRGKGVTSAKKRVDPLRRQT
+GVSRAEIWETMMTTFEERYGARRVELDEATREEAEQLARTKFATPEWTARVP*