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Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/Resolved_Gene_Trees/OG0000078_tree.txt

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Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/Resolved_Gene_Trees/OG0000287_tree.txt

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Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/Resolved_Gene_Trees/OG0000719_tree.txt

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Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/Resolved_Gene_Trees/OG0001070_tree.txt

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Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/Resolved_Gene_Trees/OG0001101_tree.txt

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Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/Resolved_Gene_Trees/OG0001198_tree.txt

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Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/Resolved_Gene_Trees/OG0001264_tree.txt

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Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/Resolved_Gene_Trees/OG0001757_tree.txt

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Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/Resolved_Gene_Trees/OG0001822_tree.txt

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Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000000_tree_id.txt

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Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000001_tree_id.txt

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Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000002_tree_id.txt

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Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000004_tree_id.txt

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Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000006_tree_id.txt

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Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000009_tree_id.txt

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Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000010_tree_id.txt

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Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000011_tree_id.txt

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Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000014_tree_id.txt

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Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000015_tree_id.txt

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Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000016_tree_id.txt

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Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000019_tree_id.txt

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Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000020_tree_id.txt

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Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000021_tree_id.txt

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Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000022_tree_id.txt

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Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000026_tree_id.txt

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Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000028_tree_id.txt

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Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000029_tree_id.txt

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Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000030_tree_id.txt

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+((4_1950:0.00188381,(1_344:-0.00027381,((2_2167:0.85778456,2_181:1.29451344):0.31294919,2_161:0.52549931):0.69657606):0.00112606):0.00381069,2_2283:0.00266569,0_161:0.00704631);
+

Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000032_tree_id.txt

@@ -0,0 +1,2 @@
+(((1_84:0.64215019,1_88:0.96025081):0.33458081,3_84:0.18483869):0.17312881,((4_236:0.01456513,2_115:0.01158787):0.01153969,1_2199:0.00155281):0.00141406,0_236:0.00111569);
+

Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000034_tree_id.txt

@@ -0,0 +1,2 @@
+((((4_1943:0.16990516,2_700:0.01777684):0.00107886,(3_2162:0.00000000,1_324:0.00000000):0.01088379):0.00699889,1_1730:0.00283550):0.00418850,0_592:0.00000000,0_2014:0.00000000);
+

Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000035_tree_id.txt

@@ -0,0 +1,2 @@
+(((4_579:0.00000000,1_356:0.00000000):0.00116114,(0_602:0.00758284,3_2137:0.04633916):0.00165752):0.00100654,(2_373:0.00090960,2_377:0.04208040):0.01706028,2_394:0.00046546);
+

Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000038_tree_id.txt

@@ -0,0 +1,2 @@
+((3_1003:0.05988475,((1_1437:0.00726013,(0_1720:0.00569369,4_1649:0.00439331):0.00177587):0.06023988,2_1078:0.07905762):0.00863038):0.66502275,0_806:0.44481738,0_807:0.13195263);
+

Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000040_tree_id.txt

@@ -0,0 +1,2 @@
+(((4_918:0.09708395,(2_1837:0.00352750,1_697:0.00112550):0.00052400):0.00899222,0_974:-0.00694217):1.19028617,(4_917:-0.68772370,3_2203:1.31174070):0.03769970,2_804:1.30472800);
+

Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000041_tree_id.txt

@@ -0,0 +1,2 @@
+(((0_1134:-0.01789897,((2_1678:0.66886616,1_862:-0.01859916):0.03596197,4_1084:-0.02181497):0.02542697):0.38494822,3_1575:0.46061678):0.07313222,3_300:0.93003472,2_1677:0.27866528);
+

Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000042_tree_id.txt

@@ -0,0 +1,2 @@
+(0_1240:0.00000000,((((0_1573:0.01725019,4_1502:0.00237081):0.27317431,2_602:0.25932919):0.12537306,3_694:0.19311619):0.13524031,4_1197:0.01048381):0.00914119,1_968:0.00000000);
+

Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000043_tree_id.txt

@@ -0,0 +1,2 @@
+((((3_2164:0.00000000,3_631:0.00000000):0.01171738,(2_396:0.03020512,3_311:0.02041888):0.00376613):0.00558413,4_1298:0.00511887):0.00439462,1_1091:0.01393088,0_1349:0.00028712);
+

Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000044_tree_id.txt

@@ -0,0 +1,2 @@
+((3_312:0.08377256,3_2165:-0.00373256):0.00373256,((1_1092:0.00071144,(0_1353:0.13095931,4_1302:0.36028569):0.04558656):0.01033281,2_397:0.01965469):0.00575931,3_632:-0.00373256);
+

Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000050_tree_id.txt

@@ -0,0 +1,2 @@
+((((3_645:1.81551912,4_1968:-0.17046712):0.19431437,2_676:-0.13629337):0.15651787,(1_1744:0.01053269,0_2028:0.01525831):0.03120325):0.30734975,2_1283:0.00842769,3_2185:0.03767031);
+

Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000051_tree_id.txt

@@ -0,0 +1,2 @@
+(((((2_666:0.05828863,0_2033:0.03951137):0.00386081,1_1752:0.01924019):0.02766956,3_582:0.33358244):0.28745206,3_583:0.29333481):0.15742419,4_1971:0.76443844,3_2050:0.70680156);
+

Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000052_tree_id.txt

@@ -0,0 +1,2 @@
+(((4_2044:0.00158944,(0_2099:0.00000000,1_1823:0.00000000):0.00916856):0.03637194,2_580:0.03779156):0.04152094,(2_2524:1.60355419,2_571:0.37239781):0.39913194,3_503:0.07621006);
+

Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000053_tree_id.txt

@@ -0,0 +1,2 @@
+((4_2132:0.01101675,((1_1898:0.01185187,(4_2118:0.00688531,0_2185:-0.00064731):0.00196763):0.19826725,3_405:1.64472925):0.09859525):0.00460275,0_2200:0.03587081,3_401:0.04619419);
+

Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000054_tree_id.txt

@@ -0,0 +1,2 @@
+(((2_470:0.01530531,(4_2124:0.00430931,3_417:0.00631569):0.00174669):0.00470219,(1_1902:0.00431900,0_2192:0.00831700):0.00616081):0.12850119,2_475:0.13837944,0_2214:0.72640956);
+

Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000055_tree_id.txt

@@ -0,0 +1,2 @@
+(2_989:0.88488431,((((2_836:0.06745370,1_1646:0.20090630):0.06452505,3_774:0.12521059):0.16959534,4_708:0.26459935):0.29607888,3_851:0.79018170):0.02650430,3_923:0.56945369);
+

Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000057_tree_id.txt

@@ -0,0 +1,2 @@
+(((2_446:1.44313107,3_410:1.57250193):0.09227583,(4_2148:0.19384638,0_2213:0.25098762):0.53974128):0.08640290,0_544:1.44500744,0_33:1.24672156);
+

Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000059_tree_id.txt

@@ -0,0 +1,2 @@
+(((1_2013:0.01009569,(4_44:0.01313569,0_49:0.01309531):0.04873081):0.10272481,3_279:0.18316219):0.10450031,2_331:0.01886881,3_270:0.04642919);
+

Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000060_tree_id.txt

@@ -0,0 +1,2 @@
+((((0_59:0.01029091,1_2023:0.02548309):0.01065043,4_54:0.01943298):0.11405682,3_259:0.12408396):0.06457935,2_317:0.03592237,2_191:1.90909163);
+

Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000061_tree_id.txt

@@ -0,0 +1,2 @@
+((2_311:0.05624506,((1_2028:0.00378656,0_64:0.00132244):0.01840394,4_58:0.01560856):0.01871144):0.02724744,3_252:0.04386931,3_667:0.71686069);
+

Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000062_tree_id.txt

@@ -0,0 +1,2 @@
+(((1_2036:0.00795127,(4_66:0.00000000,0_72:0.00000000):0.00241173):0.00309078,2_302:0.01884497):0.25774774,3_244:0.14167525,2_2287:1.34913975);
+

Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000066_tree_id.txt

@@ -0,0 +1,2 @@
+((3_139:-0.07142019,((1_1974:1.14174644,4_190:-0.05792844):0.07503194,1_2137:-0.05750094):0.07318719):0.07590019,2_187:0.51692156,0_190:-0.07330556);
+

Biomni/experiments/bioagent_bench/runs/scale_750/comparative-genomics_20260519_131022/orthofinder_input/OrthoFinder/Results_May19/WorkingDirectory/Trees_ids/OG0000070_tree_id.txt

@@ -0,0 +1,2 @@
+((((1_2179:0.00000000,0_215:0.00000000):0.00430212,4_216:0.00279487):0.13498288,2_147:0.11807963):0.04799588,2_570:1.38933087,3_105:0.19680412);
+