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Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/SA211.log

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+[13:28:33] This is prokka 1.15.6
+[13:28:33] Written by Torsten Seemann <torsten.seemann@gmail.com>
+[13:28:33] Homepage is https://github.com/tseemann/prokka
+[13:28:33] Local time is Sat May 23 13:28:33 2026
+[13:28:33] You are root
+[13:28:33] Operating system is linux
+[13:28:33] You have BioPerl 1.7.8
+[13:28:33] System has 128 cores.
+[13:28:33] Will use maximum of 4 cores.
+[13:28:33] Annotating as >>> Bacteria <<<
+[13:28:33] Generating locus_tag from '/225040511/project/bioagent-bench/dataset/comparative-genomics/data/GCF_003691675.1_ASM369167v1_genomic.fna' contents.
+[13:28:33] Setting --locustag MHAAABBN from MD5 61aaabb71c296516a41965ae3e32dce1
+[13:28:33] Creating new output folder: /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211
+[13:28:33] Running: mkdir -p \/225040511\/project\/Biomni\/experiments\/bioagent_bench\/runs\/scale_2000_rerun_sharded10_20260523_130637\/comparative\-genomics_20260523_130651\/prokka_SA211
+[13:28:33] Using filename prefix: SA211.XXX
+[13:28:33] Setting HMMER_NCPU=1
+[13:28:33] Writing log to: /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/SA211.log
+[13:28:33] Command: /225040511/miniconda3/envs/biomni_e1/bin/prokka --outdir /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211 --prefix SA211 --kingdom Bacteria --genus Micrococcus --species SA211 --strain SA211 --cpus 4 --quiet /225040511/project/bioagent-bench/dataset/comparative-genomics/data/GCF_003691675.1_ASM369167v1_genomic.fna
+[13:28:33] Looking for 'aragorn' - found /225040511/miniconda3/envs/biomni_e1/bin/aragorn
+[13:28:33] Determined aragorn version is v1.2 from 'ARAGORN v1.2.41 Dean Laslett'
+[13:28:33] Looking for 'barrnap' - found /225040511/miniconda3/envs/biomni_e1/bin/barrnap
+[13:28:34] Determined barrnap version is v0.9 from 'barrnap 0.9'
+[13:28:34] Looking for 'blastp' - found /225040511/miniconda3/envs/biomni_e1/bin/blastp
+[13:28:36] Determined blastp version is v2.17 from 'blastp: 2.17.0+'
+[13:28:36] Looking for 'cmpress' - found /225040511/miniconda3/envs/biomni_e1/bin/cmpress
+[13:28:36] Determined cmpress version is v1.1 from '# INFERNAL 1.1.5 (Sep 2023)'
+[13:28:36] Looking for 'cmscan' - found /225040511/miniconda3/envs/biomni_e1/bin/cmscan
+[13:28:36] Determined cmscan version is v1.1 from '# INFERNAL 1.1.5 (Sep 2023)'
+[13:28:36] Looking for 'egrep' - found /usr/bin/egrep
+[13:28:36] Looking for 'find' - found /usr/bin/find
+[13:28:36] Looking for 'grep' - found /usr/bin/grep
+[13:28:36] Looking for 'hmmpress' - found /225040511/miniconda3/envs/biomni_e1/bin/hmmpress
+[13:28:36] Determined hmmpress version is v3.4 from '# HMMER 3.4 (Aug 2023); http://hmmer.org/'
+[13:28:36] Looking for 'hmmscan' - found /225040511/miniconda3/envs/biomni_e1/bin/hmmscan
+[13:28:37] Determined hmmscan version is v3.4 from '# HMMER 3.4 (Aug 2023); http://hmmer.org/'
+[13:28:37] Looking for 'java' - found /225040511/miniconda3/envs/biomni_e1/bin/java
+[13:28:37] Looking for 'makeblastdb' - found /225040511/miniconda3/envs/biomni_e1/bin/makeblastdb
+[13:28:38] Determined makeblastdb version is v2.17 from 'makeblastdb: 2.17.0+'
+[13:28:38] Looking for 'minced' - found /225040511/miniconda3/envs/biomni_e1/bin/minced
+[13:28:41] Determined minced version is v4.2 from 'minced 0.4.2'
+[13:28:41] Looking for 'parallel' - found /225040511/miniconda3/envs/biomni_e1/bin/parallel
+[13:28:44] Determined parallel version is 20260422 from 'GNU parallel 20260422'
+[13:28:44] Looking for 'prodigal' - found /225040511/miniconda3/envs/biomni_e1/bin/prodigal
+[13:28:44] Determined prodigal version is v2.6 from 'Prodigal V2.6.3: February, 2016'
+[13:28:44] Looking for 'prokka-genbank_to_fasta_db' - found /225040511/miniconda3/envs/biomni_e1/bin/prokka-genbank_to_fasta_db
+[13:28:44] Looking for 'sed' - found /225040511/miniconda3/envs/biomni_e1/bin/sed
+[13:28:44] Looking for 'tbl2asn' - found /225040511/miniconda3/envs/biomni_e1/bin/tbl2asn
+[13:28:45] Determined tbl2asn version is v25.7 from 'tbl2asn 25.7   arguments:'
+[13:28:45] Using genetic code table 11.
+[13:28:45] Loading and checking input file: /225040511/project/bioagent-bench/dataset/comparative-genomics/data/GCF_003691675.1_ASM369167v1_genomic.fna
+[13:28:45] Wrote 1 contigs totalling 2483045 bp.
+[13:28:45] Predicting tRNAs and tmRNAs
+[13:28:45] Running: aragorn -l -gc11  -w \/225040511\/project\/Biomni\/experiments\/bioagent_bench\/runs\/scale_2000_rerun_sharded10_20260523_130637\/comparative\-genomics_20260523_130651\/prokka_SA211\/SA211\.fna
+[13:29:20] 1 tRNA-Arg c[1808,1882] 35 (acg)
+[13:29:20] 2 tRNA-Ser c[19025,19116] 35 (gct)
+[13:29:20] 3 tRNA-Ser c[27701,27789] 35 (tga)
+[13:29:20] 4 tRNA-Thr c[29506,29581] 35 (cgt)
+[13:29:20] 5 tRNA-Pro [58221,58297] 35 (cgg)
+[13:29:20] 6 tRNA-Thr [71190,71266] 35 (tgt)
+[13:29:20] 7 tRNA-Val [73193,73268] 35 (cac)
+[13:29:20] 8 tRNA-Arg c[89404,89479] 35 (cct)
+[13:29:20] 9 tRNA-Leu [193769,193845] 35 (taa)
+[13:29:20] 10 tRNA-Gln [239494,239567] 33 (ttg)
+[13:29:20] 11 tRNA-Ala [304945,305042] 36 (ggc)
+[13:29:20] 12 tRNA-Asn [348161,348234] 33 (gtt)
+[13:29:20] 13 tRNA-Met [405585,405659] 35 (cat)
+[13:29:20] 14 tmRNA [501489,501858] 96,134 AESKRTDFALAA*
+[13:29:20] 15 tRNA-Arg c[534746,534819] 34 (ccg)
+[13:29:20] 16 tRNA-Leu c[591118,591199] 35 (tag)
+[13:29:20] 17 tRNA-Lys c[591838,591915] 35 (ctt)
+[13:29:20] 18 tRNA-Gln [613023,613095] 34 (ctg)
+[13:29:20] 19 tRNA-Glu [613150,613223] 35 (ctc)
+[13:29:20] 20 tRNA-Glu [613352,613426] 35 (ctc)
+[13:29:20] 21 tRNA-Val [688216,688291] 35 (tac)
+[13:29:20] 22 tRNA-His c[706792,706867] 34 (gtg)
+[13:29:20] 23 tRNA-Arg c[714045,714120] 35 (tct)
+[13:29:20] 24 tRNA-Ala c[726298,726387] 31 (cgc)
+[13:29:20] 25 tRNA-Gly c[728393,728465] 33 (tcc)
+[13:29:20] 26 tRNA-Pro [729519,729593] 35 (tgg)
+[13:29:20] 27 tRNA-Ala [767922,767997] 34 (ggc)
+[13:29:20] 28 tRNA-Ala [769384,769460] 35 (ggc)
+[13:29:20] 29 tRNA-Gly c[819075,819153] 36 (gcc)
+[13:29:20] 30 tRNA-Val c[819180,819252] 33 (gac)
+[13:29:20] 31 tRNA-Cys c[819310,819381] 33 (gca)
+[13:29:20] 32 tRNA-Gly c[819399,819473] 35 (gcc)
+[13:29:20] 33 tRNA-Leu [856740,856823] 35 (caa)
+[13:29:20] 34 tRNA-Leu c[943927,944012] 35 (gag)
+[13:29:20] 35 tRNA-Ile [1031141,1031235] 35 (gat)
+[13:29:20] 36 tRNA-Pro c[1221167,1221243] 35 (ggg)
+[13:29:20] 37 tRNA-Met c[1323928,1324002] 35 (cat)
+[13:29:20] 38 tRNA-Trp c[1554138,1554211] 34 (cca)
+[13:29:20] 39 tRNA-Met c[1571869,1571943] 35 (cat)
+[13:29:20] 40 tRNA-Thr c[1572003,1572075] 33 (ggt)
+[13:29:20] 41 tRNA-Tyr c[1583298,1583381] 35 (gta)
+[13:29:20] 42 tRNA-Gly [1712060,1712133] 33 (ccc)
+[13:29:20] 43 tRNA-Ala c[1796278,1796351] 34 (cgc)
+[13:29:20] 44 tRNA-Ile [2161862,2161936] 35 (gat)
+[13:29:20] 45 tRNA-Ala [2162167,2162240] 34 (tgc)
+[13:29:20] 46 tRNA-Leu [2194570,2194655] 35 (cag)
+[13:29:20] 47 tRNA-Lys [2282484,2282557] 34 (ttt)
+[13:29:20] 48 tRNA-Glu [2297408,2297481] 35 (ttc)
+[13:29:20] 49 tRNA-Asp [2297597,2297671] 35 (gtc)
+[13:29:20] 50 tRNA-Phe [2297743,2297818] 34 (gaa)
+[13:29:20] 51 tRNA-Ser [2399680,2399766] 35 (gga)
+[13:29:20] 52 tRNA-Ser c[2481526,2481616] 35 (cga)
+[13:29:20] Found 52 tRNAs
+[13:29:20] Predicting Ribosomal RNAs
+[13:29:20] Running Barrnap with 4 threads
+[13:29:33] 1 NZ_CP033200.1 52172 16S ribosomal RNA
+[13:29:33] 2 NZ_CP033200.1 54136 23S ribosomal RNA
+[13:29:33] 3 NZ_CP033200.1 57419 5S ribosomal RNA
+[13:29:33] 4 NZ_CP033200.1 1248129 5S ribosomal RNA
+[13:29:33] 5 NZ_CP033200.1 1248436 23S ribosomal RNA
+[13:29:33] 6 NZ_CP033200.1 1251963 16S ribosomal RNA
+[13:29:33] Found 6 rRNAs
+[13:29:33] Skipping ncRNA search, enable with --rfam if desired.
+[13:29:33] Total of 57 tRNA + rRNA features
+[13:29:33] Searching for CRISPR repeats
+[13:29:39] Found 0 CRISPRs
+[13:29:39] Predicting coding sequences
+[13:29:39] Contigs total 2483045 bp, so using single mode
+[13:29:39] Running: prodigal -i \/225040511\/project\/Biomni\/experiments\/bioagent_bench\/runs\/scale_2000_rerun_sharded10_20260523_130637\/comparative\-genomics_20260523_130651\/prokka_SA211\/SA211\.fna -c -m -g 11 -p single -f sco -q
+[13:30:36] Excluding CDS which overlaps existing RNA (tRNA) at NZ_CP033200.1:303125..305518 on + strand
+[13:30:36] Excluding CDS which overlaps existing RNA (tRNA) at NZ_CP033200.1:348194..348526 on - strand
+[13:30:39] Excluding CDS which overlaps existing RNA (tRNA) at NZ_CP033200.1:706238..706813 on + strand
+[13:30:39] Excluding CDS which overlaps existing RNA (tRNA) at NZ_CP033200.1:726040..726513 on + strand
+[13:30:42] Excluding CDS which overlaps existing RNA (tRNA) at NZ_CP033200.1:1030719..1032098 on - strand
+[13:30:54] Found 2257 CDS
+[13:30:54] Connecting features back to sequences
+[13:30:54] Not using genus-specific database. Try --usegenus to enable it.
+[13:30:54] Annotating CDS, please be patient.
+[13:30:54] Will use 4 CPUs for similarity searching.
+[13:31:00] There are still 2257 unannotated CDS left (started with 2257)
+[13:31:00] Will use blast to search against /225040511/miniconda3/envs/biomni_e1/db/kingdom/Bacteria/IS with 4 CPUs
+[13:31:00] Running: cat \/225040511\/project\/Biomni\/experiments\/bioagent_bench\/runs\/scale_2000_rerun_sharded10_20260523_130637\/comparative\-genomics_20260523_130651\/prokka_SA211\/SA211\.IS\.tmp\.1145670\.faa | parallel --gnu --plain -j 4 --block 95321 --recstart '>' --pipe blastp -query - -db /225040511/miniconda3/envs/biomni_e1/db/kingdom/Bacteria/IS -evalue 1e-30 -qcov_hsp_perc 90 -num_threads 1 -num_descriptions 1 -num_alignments 1 -seg no > \/225040511\/project\/Biomni\/experiments\/bioagent_bench\/runs\/scale_2000_rerun_sharded10_20260523_130637\/comparative\-genomics_20260523_130651\/prokka_SA211\/SA211\.IS\.tmp\.1145670\.blast 2> /dev/null
+[13:33:24] Deleting unwanted file: /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/SA211.IS.tmp.1145670.faa
+[13:33:24] Deleting unwanted file: /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/SA211.IS.tmp.1145670.blast
+[13:33:28] There are still 2193 unannotated CDS left (started with 2257)
+[13:33:28] Will use blast to search against /225040511/miniconda3/envs/biomni_e1/db/kingdom/Bacteria/AMR with 4 CPUs
+[13:33:28] Running: cat \/225040511\/project\/Biomni\/experiments\/bioagent_bench\/runs\/scale_2000_rerun_sharded10_20260523_130637\/comparative\-genomics_20260523_130651\/prokka_SA211\/SA211\.AMR\.tmp\.1145670\.faa | parallel --gnu --plain -j 4 --block 93206 --recstart '>' --pipe blastp -query - -db /225040511/miniconda3/envs/biomni_e1/db/kingdom/Bacteria/AMR -evalue 1e-300 -qcov_hsp_perc 90 -num_threads 1 -num_descriptions 1 -num_alignments 1 -seg no > \/225040511\/project\/Biomni\/experiments\/bioagent_bench\/runs\/scale_2000_rerun_sharded10_20260523_130637\/comparative\-genomics_20260523_130651\/prokka_SA211\/SA211\.AMR\.tmp\.1145670\.blast 2> /dev/null
+[13:37:31] Deleting unwanted file: /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/SA211.AMR.tmp.1145670.faa
+[13:37:31] Deleting unwanted file: /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/SA211.AMR.tmp.1145670.blast
+[13:37:36] There are still 2191 unannotated CDS left (started with 2257)
+[13:37:36] Will use blast to search against /225040511/miniconda3/envs/biomni_e1/db/kingdom/Bacteria/sprot with 4 CPUs
+[13:37:36] Running: cat \/225040511\/project\/Biomni\/experiments\/bioagent_bench\/runs\/scale_2000_rerun_sharded10_20260523_130637\/comparative\-genomics_20260523_130651\/prokka_SA211\/SA211\.sprot\.tmp\.1145670\.faa | parallel --gnu --plain -j 4 --block 92947 --recstart '>' --pipe blastp -query - -db /225040511/miniconda3/envs/biomni_e1/db/kingdom/Bacteria/sprot -evalue 1e-09 -qcov_hsp_perc 80 -num_threads 1 -num_descriptions 1 -num_alignments 1 -seg no > \/225040511\/project\/Biomni\/experiments\/bioagent_bench\/runs\/scale_2000_rerun_sharded10_20260523_130637\/comparative\-genomics_20260523_130651\/prokka_SA211\/SA211\.sprot\.tmp\.1145670\.blast 2> /dev/null
+[13:51:34] Modify product: Uncharacterized protein Rv1276c => putative protein
+[13:51:35] Modify product: Phosphate-specific transport system accessory protein PhoU homolog 2 => Phosphate-specific transport system accessory protein PhoU 
+[13:51:35] Modify product: Uncharacterized tRNA/rRNA methyltransferase Rv3579c => putative tRNA/rRNA methyltransferase
+[13:51:35] Modify product: Probable transcriptional regulatory protein TcrX => putative transcriptional regulatory protein TcrX
+[13:51:35] Modify product: Uncharacterized ABC transporter ATP-binding protein YwjA => putative ABC transporter ATP-binding protein YwjA
+[13:51:35] Modify product: Bifunctional protein FolD => Bifunctional protein FolD protein
+[13:51:35] Modify product: Probable hydrolase sll0100 => putative hydrolase
+[13:51:35] Modify product: Uncharacterized protein YihR => putative protein YihR
+[13:51:35] Modify product: Putative transport protein Rv0205 => Putative transport protein
+[13:51:35] Modify product: Uncharacterized metal-dependent hydrolase TatD => putative metal-dependent hydrolase TatD
+[13:51:36] Modify product: Probable phosphomannomutase => putative phosphomannomutase
+[13:51:36] Modify product: pH-sensitive adenylate cyclase Rv1264 => pH-sensitive adenylate cyclase
+[13:51:36] Modify product: RNA/DNA methyltransferase Rv2966c => RNA/DNA methyltransferase
+[13:51:36] Modify product: Probable N-succinyldiaminopimelate aminotransferase DapC => putative N-succinyldiaminopimelate aminotransferase DapC
+[13:51:36] Modify product: Uncharacterized protein Rv2926c => putative protein
+[13:51:36] Modify product: Uncharacterized protein Rv2901c => putative protein
+[13:51:36] Modify product: Uncharacterized protein Rv2242 => putative protein
+[13:51:36] Modify product: Uncharacterized protein Rv2239c => putative protein
+[13:51:36] Modify product: GTP cyclohydrolase 1 type 2 homolog => GTP cyclohydrolase 1 type 2 
+[13:51:36] Modify product: Probable cadmium-transporting ATPase => putative cadmium-transporting ATPase
+[13:51:36] Modify product: Alpha-(1->6)-mannopyranosyltransferase Rv1459c => Alpha-(1->6)-mannopyranosyltransferase
+[13:51:36] Modify product: Thioredoxin-like reductase Rv2466c => Thioredoxin-like reductase
+[13:51:36] Modify product: Uncharacterized oxidoreductase Rv0484c => putative oxidoreductase
+[13:51:36] Modify product: Probable nicotinate-nucleotide adenylyltransferase => putative nicotinate-nucleotide adenylyltransferase
+[13:51:36] Modify product: Uncharacterized oxidoreductase YdgJ => putative oxidoreductase YdgJ
+[13:51:36] Modify product: Uncharacterized SufE-like protein Rv3284 => putative SufE-like protein
+[13:51:36] Modify product: Uncharacterized protein Rv2895c => putative protein
+[13:51:36] Modify product: Putative methyltransferase Rv1407 => Putative methyltransferase
+[13:51:36] Modify product: Transcriptional repressor SmtB homolog => Transcriptional repressor SmtB 
+[13:51:36] Modify product: Uncharacterized protein Rv1841c => putative protein
+[13:51:36] Modify product: UPF0053 protein Rv1842c => hypothetical protein
+[13:51:37] Modify product: Uncharacterized membrane protein Rv2723 => putative membrane protein
+[13:51:37] Modify product: Probable trans-aconitate 2-methyltransferase => putative trans-aconitate 2-methyltransferase
+[13:51:37] Modify product: Nucleotide-binding protein Rv1421 => Nucleotide-binding protein
+[13:51:37] Modify product: Probable cell division protein WhiA => putative cell division protein WhiA
+[13:51:37] Modify product: Iron-sulfur cluster assembly SufBD family protein SA0778 => Iron-sulfur cluster assembly SufBD family protein
+[13:51:37] Modify product: Iron-sulfur cluster assembly SufBD family protein Rv1462 => Iron-sulfur cluster assembly SufBD family protein
+[13:51:37] Modify product: Probable ATP-binding protein YheS => putative ATP-binding protein YheS
+[13:51:37] Modify product: Uncharacterized SURF1-like protein Rv2235 => putative SURF1-like protein
+[13:51:37] Modify product: Uncharacterized ABC transporter ATP-binding protein YlmA => putative ABC transporter ATP-binding protein YlmA
+[13:51:37] Modify product: Phosphorylated carbohydrates phosphatase TM_1254 => Phosphorylated carbohydrates phosphatase
+[13:51:37] Modify product: Probable helicase HelY => putative helicase HelY
+[13:51:37] Modify product: Uncharacterized protein Rv1488 => putative protein
+[13:51:37] Modify product: Probable cytochrome c oxidase polypeptide 4 => putative cytochrome c oxidase polypeptide 4
+[13:51:37] Modify product: Probable cytochrome c oxidase subunit 1 => putative cytochrome c oxidase subunit 1
+[13:51:37] Modify product: Protein Rv2204c => Protein
+[13:51:37] Modify product: Uncharacterized protein Rv2206 => putative protein
+[13:51:37] Modify product: UPF0053 protein Rv2366c => hypothetical protein
+[13:51:37] Modify product: Probable DNA polymerase III subunit delta => putative DNA polymerase III subunit delta
+[13:51:37] Modify product: DegV domain-containing protein SA1258 => DegV domain-containing protein
+[13:51:37] Modify product: Probable replication restart protein PriA => putative replication restart protein PriA
+[13:51:38] Modify product: Uncharacterized AAA domain-containing protein Rv2559c => putative AAA domain-containing protein
+[13:51:38] Modify product: Uncharacterized transporter Rv1999c => putative transporter
+[13:51:38] Modify product: Uncharacterized protein MSMEG_2731/MSMEI_2664 => putative protein/MSMEI_2664
+[13:51:38] Modify product: Probable transcriptional regulatory protein Rv2603c => putative transcriptional regulatory protein
+[13:51:38] Modify product: Uncharacterized protein YdhK => putative protein YdhK
+[13:51:39] Modify product: Probable cytosol aminopeptidase => putative cytosol aminopeptidase
+[13:51:39] Modify product: Uncharacterized RNA pseudouridine synthase Rv1540 => putative RNA pseudouridine synthase
+[13:51:39] Modify product: Probable peptidoglycan glycosyltransferase FtsW => putative peptidoglycan glycosyltransferase FtsW
+[13:51:40] Modify product: Uncharacterized HTH-type transcriptional regulator Rv1830 => putative HTH-type transcriptional regulator
+[13:51:40] Modify product: Uncharacterized protein Rv1829 => putative protein
+[13:51:40] Modify product: Uncharacterized HTH-type transcriptional regulator Rv1828 => putative HTH-type transcriptional regulator
+[13:51:40] Modify product: Probable cadmium-transporting ATPase => putative cadmium-transporting ATPase
+[13:51:40] Modify product: Uncharacterized protein Rv1708 => putative protein
+[13:51:40] Modify product: Probable tRNA-dihydrouridine synthase => putative tRNA-dihydrouridine synthase
+[13:51:40] Modify product: Uncharacterized protein Rv0102 => putative protein
+[13:51:40] Modify product: Transcriptional repressor SmtB homolog => Transcriptional repressor SmtB 
+[13:51:40] Modify product: Transcriptional repressor SmtB homolog => Transcriptional repressor SmtB 
+[13:51:40] Modify product: Uncharacterized oxidoreductase YghA => putative oxidoreductase YghA
+[13:51:40] Modify product: Aldo-keto reductase MSMEG_2408/MSMEI_2347 => Aldo-keto reductase/MSMEI_2347
+[13:51:40] Modify product: Probable membrane transporter protein YfcA => putative membrane transporter protein YfcA
+[13:51:41] Modify product: Uncharacterized methyltransferase Rv3342 => putative methyltransferase
+[13:51:41] Modify product: Uncharacterized zinc protease Rv2782c => putative zinc protease
+[13:51:41] Modify product: Protein MG115 homolog => Protein MG115 
+[13:51:41] Modify product: Probable acetyl-CoA acetyltransferase => putative acetyl-CoA acetyltransferase
+[13:51:41] Modify product: Probable succinyl-CoA:3-ketoacid coenzyme A transferase subunit A => putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A
+[13:51:41] Modify product: Probable succinyl-CoA:3-ketoacid coenzyme A transferase subunit B => putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B
+[13:51:41] Modify product: UPF0053 protein Rv1842c => hypothetical protein
+[13:51:41] Modify product: Uncharacterized protein Rv1841c => putative protein
+[13:51:41] Modify product: Uncharacterized HIT-like protein Rv0759c => putative HIT-like protein
+[13:51:41] Modify product: Probable adenylyltransferase/sulfurtransferase MoeZ => putative adenylyltransferase/sulfurtransferase MoeZ
+[13:51:41] Modify product: Uncharacterized protein Rv1324 => putative protein
+[13:51:42] Modify product: Uncharacterized protein Rv1339 => putative protein
+[13:51:42] Modify product: Probable malate:quinone oxidoreductase => putative malate:quinone oxidoreductase
+[13:51:42] Modify product: Putative peroxiredoxin Rv2521 => Putative peroxiredoxin
+[13:51:42] Modify product: Protein Rv2993c => Protein
+[13:51:43] Modify product: UPF0182 protein MSMEG_1959/MSMEI_1915 => hypothetical protein
+[13:51:43] Modify product: Uncharacterized protein YlbL => putative protein YlbL
+[13:51:43] Modify product: Probable O-methyltransferase Rv1220c => putative O-methyltransferase
+[13:51:44] Modify product: Probable aminotransferase Rv1178 => putative aminotransferase
+[13:51:44] Modify product: Uncharacterized lipoprotein Rv2585c => putative lipoprotein
+[13:51:44] Modify product: Probable bacterial non-heme ferritin => putative bacterial non-heme ferritin
+[13:51:44] Modify product: Probable nicotinate-nucleotide pyrophosphorylase [carboxylating] => putative nicotinate-nucleotide pyrophosphorylase [carboxylating]
+[13:51:44] Modify product: Protein Rv2133c => Protein
+[13:51:44] Modify product: Uncharacterized oxidoreductase MSMEG_1603/MSMEI_1564 => putative oxidoreductase/MSMEI_1564
+[13:51:45] Modify product: Probable zinc-binding alcohol dehydrogenase Rv1895 => putative zinc-binding alcohol dehydrogenase
+[13:51:45] Modify product: Uncharacterized protein Rv3421c => putative protein
+[13:51:45] Modify product: Glycogen operon protein GlgX homolog => Glycogen operon protein GlgX 
+[13:51:46] Modify product: UPF0336 protein Rv0637 => hypothetical protein
+[13:51:46] Modify product: Probable cystathionine beta-synthase Rv1077 => putative cystathionine beta-synthase
+[13:51:46] Modify product: Nucleotide-binding protein SCO4614 => Nucleotide-binding protein
+[13:51:46] Modify product: Probable 2-succinylbenzoate--CoA ligase => putative 2-succinylbenzoate--CoA ligase
+[13:51:46] Modify product: Uncharacterized protein Rv0525 => putative protein
+[13:51:46] Modify product: Uncharacterized protein Rv0498 => putative protein
+[13:51:46] Modify product: Uncharacterized ATP-dependent helicase YprA => putative ATP-dependent helicase YprA
+[13:51:46] Modify product: Uncharacterized oxidoreductase CzcO => putative oxidoreductase CzcO
+[13:51:47] Modify product: Uncharacterized ABC transporter ATP-binding protein YwjA => putative ABC transporter ATP-binding protein YwjA
+[13:51:47] Modify product: Putative multidrug export ATP-binding/permease protein SA1683 => Putative multidrug export ATP-binding/permease protein
+[13:51:47] Modify product: Probable lipoprotein aminopeptidase LpqL => putative lipoprotein aminopeptidase LpqL
+[13:51:47] Modify product: Putative hydro-lyase PSPTO_5379 => Putative hydro-lyase
+[13:51:47] Modify product: Probable cold shock protein A => putative cold shock protein A
+[13:51:48] Modify product: Uncharacterized ABC transporter ATP-binding protein YknY => putative ABC transporter ATP-binding protein YknY
+[13:51:48] Modify product: Probable enoyl-CoA hydratase EchA8 => putative enoyl-CoA hydratase EchA8
+[13:51:48] Modify product: UPF0371 protein DIP2346 => hypothetical protein
+[13:51:49] Modify product: Putative acyltransferase Rv0859 => Putative acyltransferase
+[13:51:49] Modify product: Probable cation-transporting ATPase G => putative cation-transporting ATPase G
+[13:51:49] Modify product: Acetyltransferase PA3944 => Acetyltransferase
+[13:51:49] Modify product: Uncharacterized ABC transporter ATP-binding protein YknY => putative ABC transporter ATP-binding protein YknY
+[13:51:50] Modify product: Uncharacterized ABC transporter ATP-binding protein Rv1273c => putative ABC transporter ATP-binding protein
+[13:51:50] Modify product: Uncharacterized glycosyl hydrolase MT2062 => putative glycosyl hydrolase
+[13:51:50] Modify product: Uncharacterized ABC transporter ATP-binding protein YwjA => putative ABC transporter ATP-binding protein YwjA
+[13:51:50] Modify product: Probable transcriptional regulatory protein TcrX => putative transcriptional regulatory protein TcrX
+[13:51:50] Modify product: Probable siderophore transport system ATP-binding protein YusV => putative siderophore transport system ATP-binding protein YusV
+[13:51:50] Modify product: Uncharacterized sugar epimerase YhfK => putative sugar epimerase YhfK
+[13:51:50] Modify product: Uncharacterized N-acetyltransferase Rv2669 => putative N-acetyltransferase
+[13:51:50] Modify product: Putative glutaredoxin Rv3198A => Putative glutaredoxinA
+[13:51:50] Modify product: Uncharacterized oxidoreductase YghA => putative oxidoreductase YghA
+[13:51:50] Modify product: Probable ATP-binding protein YheS => putative ATP-binding protein YheS
+[13:51:50] Modify product: Probable zinc-binding alcohol dehydrogenase Rv1895 => putative zinc-binding alcohol dehydrogenase
+[13:51:50] Modify product: Probable glycerol uptake facilitator protein => putative glycerol uptake facilitator protein
+[13:51:51] Modify product: Probable metallo-hydrolase YflN => putative metallo-hydrolase YflN
+[13:51:51] Modify product: Probable M18 family aminopeptidase 2 => putative M18 family aminopeptidase 2
+[13:51:51] Modify product: Probable chromosome-partitioning protein ParB => putative chromosome-partitioning protein ParB
+[13:51:51] Modify product: Protein Rv0786c => Protein
+[13:51:51] Modify product: UPF0312 protein SA2479 => hypothetical protein
+[13:51:51] Modify product: Probable glycerophosphodiester phosphodiesterase 2 => putative glycerophosphodiester phosphodiesterase 2
+[13:51:51] Modify product: Putative low molecular weight protein-tyrosine-phosphatase slr0328 => Putative low molecular weight protein-tyrosine-phosphatase
+[13:51:52] Modify product: Putative 2-hydroxyacid dehydrogenase SA2098 => Putative 2-hydroxyacid dehydrogenase
+[13:51:52] Modify product: Probable glycerophosphodiester phosphodiesterase 1 => putative glycerophosphodiester phosphodiesterase 1
+[13:51:52] Modify product: UPF0045 protein Rv1898 => hypothetical protein
+[13:51:52] Modify product: Universal stress protein MT2698 => Universal stress protein
+[13:51:52] Modify product: Probable inactive lipase Rv1592c => putative inactive lipase
+[13:51:52] Modify product: Uncharacterized protein Rv2895c => putative protein
+[13:51:52] Modify product: Probable FMNH2-dependent monooxygenase SfnC => putative FMNH2-dependent monooxygenase SfnC
+[13:51:53] Modify product: Probable malonic semialdehyde reductase RutE => putative malonic semialdehyde reductase RutE
+[13:51:53] Modify product: Probable enoyl-CoA hydratase EchA8 => putative enoyl-CoA hydratase EchA8
+[13:51:53] Modify product: Probable 3-hydroxyisobutyrate dehydrogenase => putative 3-hydroxyisobutyrate dehydrogenase
+[13:51:53] Modify product: Uncharacterized oxidoreductase Rv1144 => putative oxidoreductase
+[13:51:53] Modify product: Probable glycine dehydrogenase (decarboxylating) => putative glycine dehydrogenase (decarboxylating)
+[13:51:53] Cleaned 149 /product names
+[13:51:53] Deleting unwanted file: /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/SA211.sprot.tmp.1145670.faa
+[13:51:53] Deleting unwanted file: /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/SA211.sprot.tmp.1145670.blast
+[13:51:56] There are still 1052 unannotated CDS left (started with 2257)
+[13:51:56] Will use hmmer3 to search against /225040511/miniconda3/envs/biomni_e1/db/hmm/HAMAP.hmm with 4 CPUs
+[13:51:56] Running: cat \/225040511\/project\/Biomni\/experiments\/bioagent_bench\/runs\/scale_2000_rerun_sharded10_20260523_130637\/comparative\-genomics_20260523_130651\/prokka_SA211\/SA211\.HAMAP\.hmm\.tmp\.1145670\.faa | parallel --gnu --plain -j 4 --block 39021 --recstart '>' --pipe hmmscan --noali --notextw --acc -E 1e-09 --cpu 1 /225040511/miniconda3/envs/biomni_e1/db/hmm/HAMAP.hmm /dev/stdin > \/225040511\/project\/Biomni\/experiments\/bioagent_bench\/runs\/scale_2000_rerun_sharded10_20260523_130637\/comparative\-genomics_20260523_130651\/prokka_SA211\/SA211\.HAMAP\.hmm\.tmp\.1145670\.hmmer3 2> /dev/null
+[13:55:43] Modify product: Uncharacterized Nudix hydrolase NudL => putative Nudix hydrolase NudL
+[13:55:44] Modify product: Uncharacterized MFS-type transporter YfcJ => putative MFS-type transporter YfcJ
+[13:55:44] Modify product: Uncharacterized MFS-type transporter YfcJ => putative MFS-type transporter YfcJ
+[13:55:44] Cleaned 3 /product names
+[13:55:44] Deleting unwanted file: /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/SA211.HAMAP.hmm.tmp.1145670.faa
+[13:55:44] Deleting unwanted file: /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/SA211.HAMAP.hmm.tmp.1145670.hmmer3
+[13:55:44] Labelling remaining 894 proteins as 'hypothetical protein'
+[13:55:44] Possible /pseudo 'Biotin-dependent acyl-coenzyme A carboxylase alpha3 subunit' at NZ_CP033200.1 position 293656
+[13:55:44] Possible /pseudo 'IS5 family transposase ISBli8' at NZ_CP033200.1 position 349294
+[13:55:44] Possible /pseudo 'IS5 family transposase ISBli8' at NZ_CP033200.1 position 359107
+[13:55:44] Possible /pseudo 'Fluoride-specific ion channel FluC' at NZ_CP033200.1 position 502384
+[13:55:44] Possible /pseudo 'IS5 family transposase ISBli8' at NZ_CP033200.1 position 830592
+[13:55:44] Possible /pseudo 'Iron-sulfur cluster assembly SufBD family protein' at NZ_CP033200.1 position 913532
+[13:55:44] Possible /pseudo 'IS5 family transposase ISBli8' at NZ_CP033200.1 position 1211439
+[13:55:44] Possible /pseudo 'IS481 family transposase ISKrh2' at NZ_CP033200.1 position 1212507
+[13:55:44] Possible /pseudo 'IS5 family transposase ISBli8' at NZ_CP033200.1 position 1444134
+[13:55:44] Possible /pseudo 'IS5 family transposase ISBli8' at NZ_CP033200.1 position 1787569
+[13:55:44] Possible /pseudo 'Serine/threonine-protein kinase PknD' at NZ_CP033200.1 position 2186191
+[13:55:44] Possible /pseudo 'IS5 family transposase ISBli8' at NZ_CP033200.1 position 2427741
+[13:55:44] Found 1035 unique /gene codes.
+[13:55:44] Fixed 2 duplicate /gene - pdhC_1 pdhC_2
+[13:55:44] Fixed 2 duplicate /gene - map_1 map_2
+[13:55:44] Fixed 2 duplicate /gene - lolD_1 lolD_2
+[13:55:44] Fixed 2 duplicate /gene - dabB_1 dabB_2
+[13:55:44] Fixed 2 duplicate /gene - gatA_1 gatA_2
+[13:55:44] Fixed 2 duplicate /gene - prmC_1 prmC_2
+[13:55:44] Fixed 3 duplicate /gene - gloB_1 gloB_2 gloB_3
+[13:55:44] Fixed 2 duplicate /gene - lysG_1 lysG_2
+[13:55:44] Fixed 2 duplicate /gene - liaR_1 liaR_2
+[13:55:44] Fixed 2 duplicate /gene - tagU_1 tagU_2
+[13:55:44] Fixed 3 duplicate /gene - ziaR_1 ziaR_2 ziaR_3
+[13:55:44] Fixed 2 duplicate /gene - gsiA_1 gsiA_2
+[13:55:44] Fixed 3 duplicate /gene - pepN_1 pepN_2 pepN_3
+[13:55:44] Fixed 2 duplicate /gene - fprA_1 fprA_2
+[13:55:44] Fixed 2 duplicate /gene - acp_1 acp_2
+[13:55:44] Fixed 2 duplicate /gene - trpB_1 trpB_2
+[13:55:44] Fixed 3 duplicate /gene - pknD_1 pknD_2 pknD_3
+[13:55:44] Fixed 2 duplicate /gene - hin_1 hin_2
+[13:55:44] Fixed 5 duplicate /gene - btuD_1 btuD_2 btuD_3 btuD_4 btuD_5
+[13:55:44] Fixed 2 duplicate /gene - cobB_1 cobB_2
+[13:55:44] Fixed 2 duplicate /gene - mca_1 mca_2
+[13:55:44] Fixed 2 duplicate /gene - mntH_1 mntH_2
+[13:55:44] Fixed 4 duplicate /gene - merA_1 merA_2 merA_3 merA_4
+[13:55:44] Fixed 5 duplicate /gene - acsA_1 acsA_2 acsA_3 acsA_4 acsA_5
+[13:55:44] Fixed 6 duplicate /gene - lcfB_1 lcfB_2 lcfB_3 lcfB_4 lcfB_5 lcfB_6
+[13:55:44] Fixed 2 duplicate /gene - iscS_1 iscS_2
+[13:55:44] Fixed 2 duplicate /gene - hbd_1 hbd_2
+[13:55:44] Fixed 4 duplicate /gene - merR1_1 merR1_2 merR1_3 merR1_4
+[13:55:44] Fixed 2 duplicate /gene - yheS_1 yheS_2
+[13:55:44] Fixed 5 duplicate /gene - czcD_1 czcD_2 czcD_3 czcD_4 czcD_5
+[13:55:44] Fixed 2 duplicate /gene - dnaJ_1 dnaJ_2
+[13:55:44] Fixed 2 duplicate /gene - idsA2_1 idsA2_2
+[13:55:44] Fixed 3 duplicate /gene - sasA_1 sasA_2 sasA_3
+[13:55:44] Fixed 2 duplicate /gene - abaF_1 abaF_2
+[13:55:44] Fixed 2 duplicate /gene - lepA_1 lepA_2
+[13:55:44] Fixed 2 duplicate /gene - fluC_1 fluC_2
+[13:55:44] Fixed 2 duplicate /gene - lepB_1 lepB_2
+[13:55:44] Fixed 3 duplicate /gene - acdA_1 acdA_2 acdA_3
+[13:55:44] Fixed 2 duplicate /gene - ettA_1 ettA_2
+[13:55:44] Fixed 2 duplicate /gene - gabT_1 gabT_2
+[13:55:44] Fixed 3 duplicate /gene - stp_1 stp_2 stp_3
+[13:55:44] Fixed 3 duplicate /gene - uup_1 uup_2 uup_3
+[13:55:44] Fixed 2 duplicate /gene - yfcJ_1 yfcJ_2
+[13:55:44] Fixed 2 duplicate /gene - smc_1 smc_2
+[13:55:44] Fixed 2 duplicate /gene - def_1 def_2
+[13:55:44] Fixed 2 duplicate /gene - gyrB_1 gyrB_2
+[13:55:44] Fixed 2 duplicate /gene - gyrA_1 gyrA_2
+[13:55:44] Fixed 2 duplicate /gene - yknY_1 yknY_2
+[13:55:44] Fixed 2 duplicate /gene - lspA_1 lspA_2
+[13:55:44] Fixed 2 duplicate /gene - mrpD_1 mrpD_2
+[13:55:44] Fixed 2 duplicate /gene - crt_1 crt_2
+[13:55:44] Fixed 2 duplicate /gene - citE_1 citE_2
+[13:55:44] Fixed 2 duplicate /gene - gabD1_1 gabD1_2
+[13:55:44] Fixed 2 duplicate /gene - sucD_1 sucD_2
+[13:55:44] Fixed 3 duplicate /gene - cadA_1 cadA_2 cadA_3
+[13:55:44] Fixed 2 duplicate /gene - metB_1 metB_2
+[13:55:44] Fixed 2 duplicate /gene - resA_1 resA_2
+[13:55:44] Fixed 2 duplicate /gene - sad_1 sad_2
+[13:55:44] Fixed 2 duplicate /gene - atpH_1 atpH_2
+[13:55:44] Fixed 2 duplicate /gene - uvrA_1 uvrA_2
+[13:55:44] Fixed 2 duplicate /gene - ktrB_1 ktrB_2
+[13:55:44] Fixed 2 duplicate /gene - galE_1 galE_2
+[13:55:44] Fixed 2 duplicate /gene - dapE_1 dapE_2
+[13:55:44] Fixed 2 duplicate /gene - yghA_1 yghA_2
+[13:55:44] Fixed 2 duplicate /gene - mshD_1 mshD_2
+[13:55:44] Fixed 2 duplicate /gene - lysE_1 lysE_2
+[13:55:44] Fixed 2 duplicate /gene - dinG_1 dinG_2
+[13:55:44] Fixed 6 duplicate /gene - mshA_1 mshA_2 mshA_3 mshA_4 mshA_5 mshA_6
+[13:55:44] Fixed 2 duplicate /gene - rspR_1 rspR_2
+[13:55:44] Fixed 2 duplicate /gene - guaA_1 guaA_2
+[13:55:44] Fixed 2 duplicate /gene - hutI_1 hutI_2
+[13:55:44] Fixed 2 duplicate /gene - fadB_1 fadB_2
+[13:55:44] Fixed 2 duplicate /gene - glsA_1 glsA_2
+[13:55:44] Fixed 2 duplicate /gene - menB_1 menB_2
+[13:55:44] Fixed 2 duplicate /gene - echA8_1 echA8_2
+[13:55:44] Fixed 2 duplicate /gene - ideR_1 ideR_2
+[13:55:44] Fixed 5 duplicate /gene - mmgC_1 mmgC_2 mmgC_3 mmgC_4 mmgC_5
+[13:55:44] Fixed 2 duplicate /gene - glgC_1 glgC_2
+[13:55:44] Fixed 2 duplicate /gene - rlmP_1 rlmP_2
+[13:55:44] Fixed 2 duplicate /gene - qorA_1 qorA_2
+[13:55:44] Fixed 2 duplicate /gene - bkdB_1 bkdB_2
+[13:55:44] Fixed 2 duplicate /gene - bkdA_1 bkdA_2
+[13:55:44] Fixed 2 duplicate /gene - pgsA_1 pgsA_2
+[13:55:44] Fixed 2 duplicate /gene - lnrK_1 lnrK_2
+[13:55:44] Fixed 4 duplicate /gene - cmtR_1 cmtR_2 cmtR_3 cmtR_4
+[13:55:44] Fixed 3 duplicate /gene - accA3_1 accA3_2 accA3_3
+[13:55:44] Fixed 2 duplicate /gene - paaJ_1 paaJ_2
+[13:55:44] Fixed 3 duplicate /gene - ywjA_1 ywjA_2 ywjA_3
+[13:55:44] Fixed 2 duplicate /gene - tcrX_1 tcrX_2
+[13:55:44] Fixed 89 colliding /gene names.
+[13:55:44] Adding /locus_tag identifiers
+[13:55:45] Assigned 2315 locus_tags to CDS and RNA features.
+[13:55:45] Writing outputs to /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/
+[13:55:52] Generating annotation statistics file
+[13:55:52] Generating Genbank and Sequin files
+[13:55:52] Running: tbl2asn -V b -a r10k -l paired-ends -M n -N 1 -y 'Annotated using prokka 1.15.6 from https://github.com/tseemann/prokka' -Z \/225040511\/project\/Biomni\/experiments\/bioagent_bench\/runs\/scale_2000_rerun_sharded10_20260523_130637\/comparative\-genomics_20260523_130651\/prokka_SA211\/SA211\.err -i \/225040511\/project\/Biomni\/experiments\/bioagent_bench\/runs\/scale_2000_rerun_sharded10_20260523_130637\/comparative\-genomics_20260523_130651\/prokka_SA211\/SA211\.fsa 2> /dev/null
+[13:56:28] Deleting unwanted file: /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/errorsummary.val
+[13:56:29] Deleting unwanted file: /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/SA211.dr
+[13:56:29] Deleting unwanted file: /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/SA211.fixedproducts
+[13:56:29] Deleting unwanted file: /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/SA211.ecn
+[13:56:29] Deleting unwanted file: /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/SA211.val
+[13:56:29] Repairing broken .GBK output that tbl2asn produces...
+[13:56:29] Running: sed 's/COORDINATES: profile/COORDINATES:profile/' < \/225040511\/project\/Biomni\/experiments\/bioagent_bench\/runs\/scale_2000_rerun_sharded10_20260523_130637\/comparative\-genomics_20260523_130651\/prokka_SA211\/SA211\.gbf > \/225040511\/project\/Biomni\/experiments\/bioagent_bench\/runs\/scale_2000_rerun_sharded10_20260523_130637\/comparative\-genomics_20260523_130651\/prokka_SA211\/SA211\.gbk
+[13:56:31] Deleting unwanted file: /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/SA211.gbf
+[13:56:31] Output files:
+[13:56:31] /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/SA211.ffn
+[13:56:31] /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/SA211.log
+[13:56:31] /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/SA211.gff
+[13:56:31] /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/SA211.err
+[13:56:31] /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/SA211.txt
+[13:56:31] /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/SA211.fna
+[13:56:31] /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/SA211.gbk
+[13:56:31] /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/SA211.faa
+[13:56:31] /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/SA211.sqn
+[13:56:31] /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/SA211.tbl
+[13:56:31] /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/SA211.tsv
+[13:56:31] /225040511/project/Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/comparative-genomics_20260523_130651/prokka_SA211/SA211.fsa
+[13:56:31] Annotation finished successfully.
+[13:56:31] Walltime used: 27.97 minutes
+[13:56:31] If you use this result please cite the Prokka paper:
+[13:56:31] Seemann T (2014) Prokka: rapid prokaryotic genome annotation. Bioinformatics. 30(14):2068-9.
+[13:56:31] Type 'prokka --citation' for more details.
+[13:56:31] Thank you, come again.

Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/evolution_20260523_130651/assembly/anc_assembly/checkpoints.txt

@@ -0,0 +1,46 @@
+0	done
+1	done
+2	done
+3	done
+4	done
+5	done
+6	done
+7	done
+8	done
+9	done
+10	done
+11	done
+12	done
+13	done
+14	done
+15	done
+16	done
+17	done
+18	done
+19	done
+20	done
+21	done
+22	done
+23	done
+24	done
+25	done
+26	done
+27	done
+28	done
+29	done
+30	done
+31	done
+32	done
+33	done
+34	done
+35	done
+36	done
+37	done
+38	done
+39	done
+40	done
+41	done
+42	done
+43	done
+44	done
+45	done

Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/evolution_20260523_130651/assembly/anc_assembly/intermediate_contigs/k105.addi.fa

@@ -0,0 +1,4 @@
+>k105_209 flag=0 multi=1.0000 len=283
+AAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCACTCACTGCGTTCGTGGTCTGTCCAACTGGCTGCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCACCCCCCCTGGAGTGCATTATGCGAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCACTCACTGCGTTCGTG
+>k105_58 flag=1 multi=1.0000 len=228
+CAACAAAACGGGGGCTAATCTTGAAACCAGACACTTCAAGAATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGACTTTCTGGCACGACCTGGCGGCACCGATCCTGGCGGGAATTATTACCGCAGCGATTGTCGGCTGGTGGCGTAACCGGAAGTAAGGTGAAAACGGGCGTCAGGCTGCCGTGATGGCAATATGCGC

Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/evolution_20260523_130651/assembly/anc_assembly/intermediate_contigs/k105.addi.fa.info

@@ -0,0 +1 @@
+2 56

Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/evolution_20260523_130651/assembly/anc_assembly/intermediate_contigs/k105.bubble_seq.fa

@@ -0,0 +1,30 @@
+>k105_0 flag=0 multi=1.0000 len=211
+AAAACAGGGCGGTGATTATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCAAGACAGTTACGCAATGAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAA
+>k105_0 flag=0 multi=1.0000 len=249
+GACAGTTACGCAATGAGTGAAAAGAGTCACGGCAGAGAAGAAATCCGTCTTCATATTGTTTGCGATGTCCCTGATGAACTTATTGATTTCACGTTTGAATGGAAAGGACTGAAGAAATTATGCGTGGCAGTCTCCTTTCGGTCAATAATAGCAGAACAAAAGAAAGAGCCAGAAATGACGGTCAGATATTATATCAGTTCTGCTGATTTAACCGCAGAAAAGTTCGCCACAGCAATCCGAAACCACTGG
+>k105_0 flag=0 multi=1.9688 len=297
+CCGCAGGGGAGCGATTCATGTCATTAGTGCGTTCTCAACAATGCACAGTCTGGTCATCGGACAGATCAAGACGGATGAGAAATCTAATGAGATTACAGCCATTCCTGAACTTCTTAACATGCTGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGATGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGCGGTGATTATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCA
+>k105_0 flag=0 multi=1.0000 len=211
+GAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGATACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGACTGCCATTCTTCAGATGATAAAGACGTCATTGCAATTGATGGAAAAACGCTCCGGCACTCTTATGACAAGAGTCGCCGCAGGGGAGCGATTCATGTC
+>k105_0 flag=0 multi=2.0000 len=151
+ATGCGTGACTGCCATTCTTCAGATGATAAAGACGTCATTGCAATTGATGGAAAAACGCTCCGGCACTCTTATGACAAGAGTCGCCGCAGGGGAGCGATTCATGTCATTAGTGCGTTCTCAACAATGCACAGTCTGGTCATCGGACAGATCA
+>k105_0 flag=0 multi=8.6522 len=197
+CAGTTAATAAAGCACTCGTGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCAAAATCACCATATTGCTTCAAAAAATCGAGATGTGTTTCCCCAAAATCCTCTATATCTTCCCAACCTTCCGCACCAGAAATAACGGCACAAATAGTCAACAGTAGAATATC
+>k105_0 flag=0 multi=3.8117 len=551
+CGTCAATATTCGATAAATACGCGGTTGTTGTTGAGCATCAACTTCGTGGCTGGATGTGAGGGAGACAAATGGCTACATCGACAGTAATTCCAGGAGATATCACCACGCTAAAGGGAGATGTCAGTAAAACTAAGGAAGATATTTCCTCAATTAACGGAAAAGTATCAACGCTTCAGACTGATATGACCAGTGCAAAGCAGGATATCAGCACCAGATACACAAAAACTGAAGTTGATAATAAGCTGAAAAACAAACTGGAAGTGAACGATCTGGAAAGCGGTCGTTATGGTGGAGATTTTTACCCGTTGACTGGCCGTGAAGCGTTTTATATGTGGGGATTGGGCACGACTACAGCGGCGGCAAACCTTTATCTTAATCCTGACCCTGCAATTTCGTCTGTACTGCGGTCAACATCGTCTATTCGCTATAAACATTCAGTAGAGACGATAGATTCAGAGCACGCCGATCTCATTTTCAGGATGCGCCCTGTGTGGTACAGGTCGCAATGCGAAAATGACAGGCGTGACTGGGGATTCTACGGATTGATTGCC
+>k105_0 flag=0 multi=13.0000 len=2026
+GAATGCAGCAGCCGAAAGCGAGAGCGCGGCAGCCGGTTCTGCGACTGCAGCAGCTGGATCAGCAACTGCTGCGGCTAACAGCCAGAAAGCAGCGAAGACGAGCGAAACTAACGCAAAGTCCAGCCAGACGGCAGCGAAGACCAGCGAAACAAATGCCAAAGCCAGCGAAACTGCGGCGAAAAGCAGTCAGGATGCAGCAGCCGAAAGCGAGAGTGCTGCAGCTGGTTCTGCAAGTGCGGCGGCTGCTTCTGCCACTGCATCAGCAAACAGTCAAAAAGCTGCAAAAACCAGTGAAACCAATGCAAAGACAAGCGAGACTGCAGCGGCGAACTCGGCGCAAGCATCGGCAGCAAGCCAGACAGCAGCTAAAGCAAGTGAGGATGCAGCCAGAGAGTATGCAAGCCAGGCAGCAGAGCCGTATAAATATGTCTTACAGCCACTGCCTGATGTGTGGATACCGTTTAACGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCAAATAACCGTAGGTGATGATGTTATTAAAATGCCATCCGATAAGGTTGTTAGCTTCAAACGCGCATCAGGTGCAACATACATTAATAAATCAGGTGTATTAACCGTTGCTGAAGTTGACGAACCGCGATTTGAACGAGAAGGTTTGCTGATTGAAGGACAGAGAACAAACTATTTCAGAAATTCAAATACACCAGAAGCATGGAATAACACGGGTAGTGTGTCTGTTGAGTCGTTCGACAGTGATAAGGGGTTTAACTATGGAAGGATAACTGTTATTAATGAAAATCCGACAGCACAAGGATATCAGGCAATTGCTGTAAACACGAATGATGCTTACACCTGCCCGGCAGGTTCTTATACGACGATATCGTGTCTGACGAAAAGTGATAATTCCCGGTGTCGTGCAAGGTTCGGAAAAATGTCTGATAATGGTGCGTTTGTTTTTCATTCAGATGCAGTTCTGGATCCTGTTACGGGAAATGTTGTTCATGGAAATAATGTGACGGTGACGGCAGAAAGAGTCGGTGAATGGTGGTTGTTTACCGCCACTCTTTTTGCAGATGCGGAAATGATAATCAGCTCAAGATTTGAAATCCTGGCGATGCCTGGAATCAGTATTATCCCCAATGGCTCTACGTTAGATATTGCGATGCCTCAGGCGGAGATTGGGTCGTACAGGACGTCATTTATCATTACTGAAGGGGCTCCTGGCACTCGCTCCAGCGACATGGTGACAATACCTGTAAGAAACAATATTCACCGATTACCATTCAGTGCTCTTGTTGAAGTTAATAAAAACTGGGATATCCCTCCCAGCAAATCACCATTAATCTTTAATGTTAAAGATTATCAGGAAAATGGTCTGTTCACGCATGGATTCCGTGGTAATAATTTCTCTGATGCCGGTTCTCCTTTTATTTCTATGGGAGGGTGTAATAAATATGTGGCAACAACCCAGAGGAAAATCATTTCAGGCTTCCGTTGTGGCGCTGATGGAGATGTTCAGGCCGTATGTAATGGTGAATTATCTGTTGCGGCAAAAACAACATGGACTTCAATTGTTCCACGGGCAGTATTGCGAATTGGAGGGCAGGGCACTAATGGGGAGTATCATCTTTTTGGTCATATCCGTAATCTGCGTATCTGGCATAAAGAATTAACTGATGCGCAAATGGGGGAGAGTATTAAATGAAAGATTTAACACTCAAATTTGCAGACAGGGCCGACTTTTCGGCCTTTATGGAGAGTATTGGCTATTATGATGACGAGTCGATGCAGGATGATATTCTTATTGACGTGATAGGTAACGTGTACAAAGAAACCGGAGAACTGACTGAAGATGGCGAACCGGTATGTGTTAAGGAAGACGGATATTTTGTAAACGTGCGCATCATTAATGATGTAAAAAAATCGTCAATATTCGATAAATACGCGGTTGTTGTTGAGCATCAACTTCGTGGCTGGATGTGAGGGAGACAAATGGCTACATCGACAGTAATTCCAGGAGATATCACCA
+>k105_0 flag=0 multi=23.0000 len=254
+ATAGATTCAGAGCACGCCGATCTCATTTTCAGGATGCGCCCTGTGTGGTACAGGTCGCAATGCGAAAATGACAGGCGTGACTGGGGATTCTACGGATTGATTGCCGAGGAAGTAGGAGAAATTGCCCCTCAGTTTGTACACTGGCGACCAGCTAACGAAGATGATGCTCCTGAAGCTATTTCCAGCAATGGCCTTGTTGCCGAAGGTGTAATGTACGAACGTCTGGTTGTTCCACTGATTCACCATATCCAGAA
+>k105_0 flag=0 multi=3.7852 len=496
+GCAACGAGAATACGGTCCCTAAACCCCAGGTCGCGCGCCTCTCACCTGGCGTCATTTTATAATCGTTCATTACCACCCCTTAAAAAAATGCCCACATAGTGTAGTAATAAGCACACATTTAGCCTGAAACATTATCATCCATGTCACCAAATCGTTTATTTAGTGAGATAAAACTAGCATATTCGTAAGATAAAAAATGCACATGGCAATCAAGAAATGATATTATTACTTTTTTGATGTAAAACTATTTAGTTTTAAAATTCATTTTTTCAACATATAGAGCATTCATTTTATGAATGCAAAAAAACATACCTGACACACAAATTACTCTCCTCTGTAATATCTGTAATATTTTCTCATTAACACTCTGTTTACCCAACATGCGCTCCGCACTACACTATGTGGGCATTTTTTTAAGGGGTGGTAATGAACGATTATAAAATGACGCCAGGTGAGAGGCGCGCGACCTGGGGTTTAGGGACCGTATTCTCGTTGC
+>k105_0 flag=0 multi=12.0000 len=13602
+ACTACACTATGTGGGCATTTTTTTAAGGGGTGGTAATGAACGATTATAAAATGACGCCAGGTGAGAGGCGCGCGACCTGGGGTTTAGGGACCGTATTCTCGTTGCGCATGCTGGGCATGTTTATGGTTCTGCCGGTTCTGACCACGTACGGCATGGCTCTGCAAGGTGCCAGCGAAGCATTAATCGGTATTGCCATTGGTATTTATGGTCTGACTCAGGCCGTTTTTCAGATTCCGTTTGGCCTGCTTTCCGACCGCATTGGTCGCAAACCATTAATTGTCGGTGGGCTGGCGGTGTTTGCCGCCGGTAGCGTTATCGCTGCGCTTTCCGACTCCATCTGGGGAATTATTCTGGGCCGGGCGCTACAAGGCTCTGGAGCAATTGCCGCCGCCGTTATGGCGCTGCTTTCCGATCTCACGCGCGAACAAAACCGCACCAAAGCGATGGCGTTTATCGGCGTGAGCTTTGGCATTACCTTTGCCATTGCGATGGTGCTTGGCCCGATCATCACTCACAAACTTGGGCTGCACGCGCTGTTCTGGATGATCGCTATTCTGGCAACAACCGGCATTGCGTTGACCATTTGGGTTGTGCCCAACAGTAGCACTCACGTACTTAATCGTGAGTCCGGAATGGTGAAAGGCAGTTTCAGTAAAGTGCTGGCGGAACCGCGGCTGCTAAAACTCAACTTTGGCATTATGTGTCTGCACATGCTTCTGATGTCTACGTTTGTTGCCCTGCCCGGACAGCTAGCTGATGCGGGGTTCCCGGCGGCTGAACACTGGAAGGTCTATCTGGCGACGATGTTAATCGCCTTTGGCTCGGTCGTGCCTTTCATTATCTACGCTGAAGTTAAGCGCAAAATGAAGCAAGTCTTTGTCTTCTGCGTCGGGTTGATCGTGGTTGCGGAAATTGTGTTGTGGAACGCACAAACGCAGTTCTGGCAACTGGTGGTCGGCGTGCAGCTTTTCTTTGTGGCGTTTAATTTGATGGAAGCCCTTCTGCCCTCACTTATCAGTAAAGAGTCGCCAGCAGGTTACAAAGGTACGGCGATGGGTGTCTACTCCACCAGCCAGTTTCTTGGCGTGGCGATTGGCGGTTCGCTGGGCGGCTGGATTGACGGCATGTTTGACGGTCAGGGGGTATTTCTCGCTGGCGCAATGCTGGCCGCAGTGTGGCTGGCAGTCGCCAGTACCATGAAAGAACCGCCGTATGTCAGCAGTTTGCGCATTGAAATCCCGGCGGACATTGCCGCAAACGAAGCGTTAAAAGTGCGTTTGCTGGAAACTGAAGGCGTCAAAGAAGTGTTGATTGCAGAAGAAGAGCATTCAGCTTATGTGAAAATCGACAGCAAAGTGACAAATCGCTTTGAGGTTGAACAGGCAATTCGTCAGGCATAAAAAACGCGGCGAATTGCCTGCTGCGCTACGCTTACCAGGCCTACAAAGTTCTTGAGTTACAAACCGTTGTAGGCCGAATCAGGCGTTCATGCCGCATCTGACATGAACAAAACGCACATTGTCGCGATTAATCGCGGAAGTTTTTGAACTGGAACGGCTGGCCGAGATCGCCACCACGTACCATCGCCATGACAGCCTGCAAATCATCACGAGATTTGCCAGTCACACGGATCTCATCGCCCTGAATTTGCGCCTGCACTTTCAGTTTGCTGTCTTTAATCATCTTGACGATTTTCTTCTGGGTCGCGCTCTCAATGCCCTGTTTCAGTTTCGCTTCCACAAACCAGGTTTTACCGCTATGAACGATATTTTCCGGTACATCCAGTGAACTGCCTTCAATGCCGCGCTTCAGCAGCTTGGCACGCAGAATATCCAGCAACTGATTGACCTGGAAGTCGGACTCGCTCAACACTTTGATGGTTTTGCTGGCGTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGAAGTCAAAACGGGACTCCACTTCGCGACTCGCGTTATCGACCGCGTTACGTGCTTCCTGAAGATCAACTTCAGAGACAATATCGAAAGATGGCATCTTTTCCTCTCCCTTCATTTTTGATGCGAAGCATAATACCTGCAAAGTTAAATAACCAACAGTCCTGCACCAGGACGTATCCCTTAATTGTGCATAGTCGCAACAGCATGCACAATTAAGGGATAGCCTTATTGAACACCCGGAGTGGTTGCGGGTGAGGAGGAACAATGAAAATTACCGTATTGGGATGCGGTGCCTTAGGGCAATTATGGCTTACAGCACTTTGTAAACAGGGTCATGAAGTTCAGGGCTGGCTGCGCGTACCGCAACCTTATTGTAGTGTGAATCTGGTTGAGACAGATGGTTCGATATTTAACGAATCGCTGACCGCCAACGATCCCGATTTTCTCGCCACCAGCGATCTGCTCCTGGTGACGCTGAAAGCATGGCAGGTTTCCGATGCCGTCAAAAGCCTCGCATCCACACTGCCTGTAGCTACGCCAATACTGTTAATTCACAACGGCATGGGCACCATCGAAGAATTGCAAAACATTCAGCAGCCATTACTGATGGGCACCACCACCCATGCCGCCCGCCGCGACGGCAATGTCATTATTCATGTGGCAAACGGAATCACGCATATCGGTCCGGCACGGCAACAGGATGGCGATTACAGTTATCTGGCGGATATTTTGCAAACCGTGTTGCCTGACGTTGCCTGGCACAACAATATTCGCGCCGAGCTGTGGCGCAAGCTGGCCGTCAACTGTGTGATTAATCCACTGACTGCCATCTGGAATTGCCCGAACGGTGAATTACGTCATCATCCGCAAGAAATTATGCAAATATGCGAAGAAGTCGCGGCAGTGATCGAGCGCGAAGGGCATCATACTTCAGCGGAAGATTTGCGTGATTACGTGATGCAGGTGATTGATGCCACAGCGGAAAATATCTCGTCGATGTTGCAGGATATCCGCGCGCTGCGCCACACCGAAATCGACTATATCAATGGTTTTCTCTTACGCCGCGCCCGCGCGCATGGGATTGCCGTACCGGAAAACACCCGCCTGTTTGAAATGGTAAAAAGAAAGGAGAGTGAATATGAGCGCATCGGCACTGGTTTGCCTCGCCCCTGGTAGTGAAGAGACTGAAGCCGTCACCACTATCGATCTGCTGGTTCGCGGCGGTATCAAAGTCACCACTGCCAGCGTCGCCAGCGATGGCAACCTGGCCATTACCTGCTCGCGCGGCGTGAAGCTGCTGGCGGATGCGCCGCTGGTCGAGGTGGCTGATGGCGAATATGACGTGATCGTACTGCCTGGTGGCATTAAAGGCGCAGAGTGTTTTCGCGATAGTACCCTGCTGGTTGAAACCGTTAAACAGTTCCACCGTTCCGGGCGTATCGTCGCGGCTATTTGCGCCGCGCCAGCCACCGTGCTGGTACCGCACGATATCTTCCCGATTGGCAATATGACCGGCTTCCCGACGCTGAAAGACAAAATTCCCGCCGAACAATGGCAGGACAAGCGCGTCGTCTGGGATGCACGGGTAAAATTGCTGACCAGCCAGGGGCCGGGTACGGCTATTGATTTTGGTCTGAAAATTATCGACCTGCTGGTTGGGCGCGAGAAAGCCCATGAAGTGGCATCACAACTGGTGATGGCGGCAGGGATTTATAATTATTACGAGTAGTGTCGGATGCGGCAAACGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTATGGGCGATACACCTTCACATTGTTAAAGCCCTGCTCGCGCAGATAGAGCGCCTGCAGACGGCTCATCACCCCGCGCTCACACCACAGTAGCCAGGTTCTGTTCTGGTCGAGATCGCCAAATTTGGTGCTCAGTTTATAGAACGGCAGAGAAACCACGTCAATCCCTTCGACTTTCAGTGGCTTATCTTCCTGCTCATCGACAGAACGGATATCGAGGATCACGTCGTTCGGGCCAAAGCCATTGACGGTTTCCACTTCCACCACTTCCTGCTCGGTCTGCTGGGCGATTTCGCGGATATCAACGTTATTCGCTTCCTCAACCACTTTATCGAGAATACTGAAGTCGAACTTCTCTTCTTCCGCTTCAATCTTCGATTTAACCGCTTTCACCGTCGGGCTTTTGGAGATCACGCCACAATATTCTGGCATCGTGCGAGCAAAGTCTTCAGTGCCAATCTGGCGGGCCAGGTTGATGATGTGCTCTTTGTCGTAAGAAATCAGCGGACGCAGGATCAGCGTGTCAGAGACGTTATCAATCAGGCGCAGGTTGGTCAGCGTCTGACTGGACACCTGGCCGAGCGCTTCGCCGGTGACCAGCGCCTGTACGCCGTAACGTTCAGCCACTTTAGACGCGGCACGCACCATCATACGTTTGAGGATAACGCCCATCTGACCGTCGTCGATTTTCTCGAGAATTTCCCCAACGACCGGTTCGAAATTAATAGCGACAAAACGCACGCGGTGGGAGCTGCCAAAACGGTTCCACAGATAATGCGCCACCTGACGCACGCCAATTTCATGCGCCGCGCCGCCAAGGTTAAAGAAACAGTAATGCACGCGGCAGCCGCGACGCATCAACATATAACTGGAAACACCGGAGTCGAAACCACCGGAAATGAGCGACAGCACGTCTTCCTGGGTGCCGATCGGGAAACCGCCAATACCTTCGTAGCGGCCTTTAATCAGCAGGAGACGATCGTCTTCCACTTCCAGATGGACAGTCACTTCCGGATTGGTCAGCTTCACGCGCGCGGACTCAATATGCTGATTTAAACCGCCGCCGACGTAACGTTCCACATCAATCGAGCTAAAATCATGTTTGCCACGACGCTTCACGCGTACGCAGAAGGTTTTGCCTTCCAGCTGATCGCGGTACTGAACCAACGCTTTCTCGAAAATATCGTGCATGTCGGTAAACGGCACGTCTTCGACTTCGAGAATATGGTGGATACCCGGAATACGGGTCAGAGCGTCGCGAATAGCCAGACGCTGGTTTTCATCTTTCGCGCGAACTTCGATGTTATCCCAGTGGCGGACGACAGCGAGCGTCTCATCATAGTGCTTTAAAACGTTACGAATGTTCCCGGTAAGGATTTTTATAAAGCGCAAGCGCACAGATTGGCTTTTGATGGTGATTTCCGGGAACAATTTAATGATAAACTTCATGGCGGCAATGGTTCGTTGGCAAGCCTTAAGCGACTTGTATAGGGAAAAATACAGCAGCCCACACCTGCGGCTGCATCCAGGCGCGGAAGTATACCACTAACATCGCTTTGCTGCGCACATCACCTTACCATTGCGCGTTATTTGCTATTTGCCCTGAGTCCGTTACCATGACGGGGCGAAAAATATTGAGAGTCAGACATTCATTATGCCGAAGAAAAATGAGGCGCCCGCCAGCTTTGAAAAGGCGCTGAGCGAGCTGGAACAGATTGTAACCCGTCTGGAAAGTGGCGACCTGCCGCTGGAAGAGGCGCTGAACGAGTTCGAACGCGGCGTGCAGCTGGCACGTCAGGGGCAGGCCAAATTACAACAAGCCGAACAGCGCGTACAAATTCTGCTGTCTGACAATGAAGACGCCTCTCTAACCCCTTTTACACCGGACAATGAGTAATGGACTTTCCGCAGCAACTCGAAGCCTGCGTTAAGCAGGCCAACCAGGCGCTGAGCCGTTTTATCGCCCCACTGCCCTTTCAGAACACTCCCGTGGTCGAAACCATGCAGTATGGCGCATTATTAGGTGGTAAGCGCCTGCGACCTTTCCTGGTTTATGCCACCGGTCATATGTTTGGCGTTAGCACAAACACGCTGGACGCACCCGCTGCTGCCGTAGAGTGTATCCACGCTTACTCATTAATTCATGATGATTTACCGGCGATGGATGATGACGATCTGCGCCGCGGTTTGCCGACCTGCCATGTGAAGTTTGGCGAAGCAAACGCGATTCTCGCTGGCGACGCTTTACAAACGCTGGCGTTCTCGATTCTAAGCGATGCCGATATGCCGGAAGTGTCGGATCGCGACAGAATTTCGATGATTTCTGAACTGGCGAGCGCCAGCGGTATTGCCGGAATGTGCGGTGGTCAGGCACTAGATTTAGACGCGGAAGGCAAACACGTACCTCTGGACGCGCTTGAGCGTATTCATCGTCATAAAACCGGCGCATTGATTCGCGCCGCCGTTCGCCTTGGTGCATTAAGCGCCGGAGATAAAGGGCGTCGTGCTCTGCCAGTACTCGACAAGTACGCAGAGAGCATCGGCCTTGCCTTCCAGGTTCAAGATGACATCCTGGATGTGGTAGGAGATACTGCAACGTTGGGAAAACGCCAGGGTGCCGACCAGCAACTTGGTAAAAGTACCTACCCTGCACTTCTGGGTCTTGAGCAAGCCCGGAAGAAAGCCCGGGATCTGATCGACGATGCCCGTCAGTCGCTGAAACAACTGGCTGAACAGTCACTCGATACCTCGGCACTGGAAGCGCTAGCGGACTACATCATCCAGCGTAATAAATAAACAATAAGTATTAATAGGCCCCTGATGAGTTTTGATATTGCCAAATACCCGACCCTGGCACTGGTCGACTCCACCCAGGAGTTACGACTGTTGCCGAAAGAGAGTTTACCGAAACTCTGCGACGAACTGCGCCGCTATTTACTCGACAGCGTGAGCCGTTCCAGCGGGCACTTCGCCTCCGGGCTGGGCACGGTCGAACTGACCGTGGCGCTGCACTATGTCTACAACACCCCGTTTGACCAATTGATTTGGGATGTGGGGCATCAGGCTTATCCGCATAAAATTTTGACCGGACGCCGCGACAAAATCGGCACCATCCGTCAGAAAGGCGGTCTGCACCCGTTCCCGTGGCGCGGCGAAAGCGAATATGACGTATTAAGCGTCGGGCATTCATCAACCTCCATCAGTGCCGGAATTGGTATTGCGGTTGCTGCCGAGAAAGAAGGCAAAAATCGCCGCACCGTCTGTGTAATCGGCGATGGTGCGATTACCGCAGGCATGGCGTTTGAAGCGATGAATCACGCGGGCGATATCCGTCCTGATATGCTGGTGGTTCTCAACGACAATGAAATGTCGATTTCCGAAAATGTCGGCGCGCTCAACAACCATCTGGCGCAGCTGCTTTCCGGTAAGCTTTACTCTTCACTGCGCGAAGGCGGGAAAAAAGTTTTCTCTGGCGTTCCGCCAATTAAAGAGCTGCTCAAACGCACCGAAGAACATATTAAAGGCATGGTAGTGCCTGGCACGTTGTTTGAAGAGCTGGGCTTTAACTACATCGGCCCGGTTGACGGTCACGATGTGCTGGGGCTTATCACCACGCTTAAGAACATGCGCGACCTGAAAGGCCCGCAGTTCCTGCATATCATGACCAAAAAAGGTCGTGGTTATGAACCGGCAGAAAAAGACCCAATCACTTTCCACGCCGTGCCTAAATTTGATCCCTCCAGCGGTTGTTTGCCGAAAAGTAGCGGCGGTTTGCCGAGCTATTCAAAAATCTTTGGCGACTGGTTGTGTGAAACGGCAGCGAAAGACAACAAGCTGATGGCGATTACTCCGGCAATGCGTGAAGGTTCCGGCATGGTCGAGTTTTCACGTAAATTCCCGGATCGCTACTTCGACGTGGCAATTGCCGAGCAACACGCAGTGACCTTTGCCGCCGGTCTGGCGATTGGTGGGTACAAACCCATTGTCGCGATTTACTCCACTTTCCTGCAACGCGCCTATGATCAGGTGCTGCATGACGTGGCGATTCAAAAGCTACCGGTCCTGTTCGCCATTGACCGCGCGGGCATTGTTGGTGCTGACGGTCAAACTCACCAGGGCGCTTTTGATCTCTCTTACCTGCGCTGCATACCAGAAATGGTCATTATGACCCCGAGCGATGAAAACGAATGTCGCCAGATGCTCTATACCGGCTATCACTATAACGATGGCCCGTCCGCGGTGCGCTACCCGCGCGGCAACGCGGTTGGCGTGGAACTGACGCCGCTGGAAAAACTACCAATTGGCAAAGGCATTGTGAAGCGTCGTGGCGAGAAACTGGCGATCCTTAACTTTGGTACGCTGATGCCAGAAGCGGCGAAAGTCGCCGAATCGCTGAACGCCACGCTGGTCGATATGCGTTTTGTGAAACCGCTTGATGAAGCGTTAATTCTGGAAATGGCCACCAGCCATGAAGCGCTGGTCACCGTAGAAGAAAACGCCATTATGGGCGGCGCAGGTAGCGGAGTGAACGAAGTGCTGATGGCCCATCGTAAACCAGTACCCGTGCTGAACATTGGTCTGCCGGACTTCTTTATTCCGCAAGGAACTCAGGAAGAAATGCGCGCCGAACTCGGCCTCGATGCCGCCGGTATGGAAGCCAAAATCAAGGCCTGGCTGGCATAATCCCTACTCCACTCCTGCTATGCTTAACAAATTATTCATAGACTCTAAATAATTCGAGTTGCAGGAAGGCGGCAAACGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAACGAATGCAGCCGCAGCACATGCAACTTGAAGTATGACGAGTATGGCAGGAGTGGCAGCATGCAATACAACCCCTTAGGAAAAACCGACCTTCGCGTTTCCCGACTTTGCCTCGGCTGTATGACCTTTGGCGAGCCAGATCGTGGTAATCACGCATGGACACTGCCGGAAGAGAGTAGCCGTCCCATCATTAAACGCGCGCTGGAAGGCGGCATAAATTTCTTTGATACCGCCAATAGCTATTCCGATGGTAGCAGCGAAGAGATCGTTGGTCGCGCACTGCGGGATTTCGCCCGTCGTGAAGACGTGGTCGTTGCCACCAAAGTGTTCCATCGCGTTGGTGATTTACCGGAAGGATTATCCCGTGCACAAATTTTGCGCTCTATCGACGACAGCCTGCGACGTCTCGGCATGGATTATGTCGATATCCTGCAAATTCATCGCTGGGATTACAACACGCCGATCGAAGAGACGCTGGAAGCTCTGAACGACGTGGTAAAAGCCGGGAAAGCGCGTTATATCGGCGCGTCATCAATGCACGCTTCGCAGTTTGCTCAGGCACTGGAACTCCAAAAACAGCACGGCTGGGCGCAGTTTGTCAGTATGCAGGATCACTACAATCTGATTTATCGCGAAGAAGAGCGCGAGATGCTGCCACTGTGTTATCAGGAGGGCGTGGCGGTGATTCCGTGGAGCCCGCTGGCGCGGGGGCGACTGACGCGTCCGTGGGGAGAAACTACCGCACGACTGGTGTCTGATGAGGTGGGGAAAAATCTCTATAAAGAAAGCGATGAAAATGACGCGCAGATCGCAGAGCGGTTAACGGGCGTCAGTGAAGAACTCGGTGCAACACGAGCACAAGTTGCGCTGGCCTGGTTGTTGAGTAAACCGGGCATTGCCGCACCGATTATCGGTACATCGCGGGAAGAACAGCTTGATGAGCTGCTGAACGCGGTGGATATCACTTTGAAGCCGGAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATGCGGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGCAACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGAATGCCCAGCGGCCAGTGATGACCAATAAAGTACAGGATGCCAGCGGAGATCACCCCGGCGACAATATCATCTATCATGATCCCCATGCCGCCATGCACATTGCGATCAAACCAGCGGATCGGCCACGGTTTCCACATATCCAGAATACGGAAAATCACAAACCCGGCGGCAACCCACTGCCAGTCATTGGTCGGCAGCGCCATGAGCGTGATCCACATACCAATAAATTCGTCCCAGACAATGCTGCCGTGATCGTGCACGCCCATATCTTTTGCGGTCTGATGACAAAGATAGACGCCGATACAGATCCCCAGCATCACCACCAGCGAGTAGAGCTGCCAGGGCAAAAAGGTCATCAGATACCAGAACGGAATCGCTGCCAGCGAGCCCATCGTCCCAGGAACGATCGGGCTTAATCCACTTCCGAATCCGACAGCAAGTAGATGCCACGGATTACTCATCTTCAGGCGACTTTTCGCGACATCTTTATGGCGTGGCAAAATGGTCATATCCTTTCCAGTCTAATGTAACAGGTTCGCCGTCACGAATAAAACAAAGCCCTTCGATATCGGCGGTCATTTGCCCGATACAGGTAAACGGTACGCCCAGGTGTCCGAGAGCCACATCCAGCGCGCCACGGTTCAGTTCCGGCACAGTGAAACACAACTCGTAATCTTCACCGCCAGAGAGCGCCCAGCGCAGCGCCTGTTCCGGTTCAACATGGCGAGAAAGCGCATCAGAAAACGGCAGCAATGCCAGGTCAATACGTGCGCCGCAGTCGCTGGCTTTCACGATATGCCCGAGATCGGAAATCAGACCGTCAGAGAGATCGATAGCTGAATTTGCCAGATCGCGCAGTGCCTGCCCCTGTAAAATACGCGGCGATGGACGGAGATGACGTTTGATCAAGTAGTCAGCATCTTTAGCATCGGCAACCTGCAAACGGTTTTGCAAAATCGCCAGCCCGGCGGCGCTATCGCCCGGTGTACCGGTCACATAGATCCAGTCACCCGGTTTCGCCCCAGAGCGCGTTAAGGCTCGTCCCATCGGAACAAAGCCGTGGATACCCAACGTCATTGATAATGGCCCACGCGTGGTATCGCCGCCAATGAGTTGCATATCGTAATAATTGAGAAGATCAAACAAACTGTCGCTGAAGGACTCAAGCCACGCTTCGTCTACGTCCGGCAAGGTTAATGCCAGCGTCAGCCAGGCCGGATCGGCCCCCATCGCTGCCAGATCGCTTAGGTTCACCGCCAGTGCTTTATACGCCAGATCAGCAGGATCGATATCAGGGAGGAAGTGGTTGCCCGCCACCAGCGTATCAGTGCTGATCGCCAGGGTCTGTTTCTCGGGGATATTGAGAAGTGCGCAATCGTCGCCGATGCCCAGTTCGACATCAAGACGAGAACTTCTTACACGGTCAAAATAACGGGCAATCAGGGAGAACTCGCCACATGCCATACGTTATGCCTCAGCAGGTAAAAAAGAAAAGGCCGGCGATCATGGAACGGTCTTCCGTGAATCTACCGGCCTGGATATCACTTTTTGTTAGGGCGAATCACAGGTGCTGCTTTATCGAGTACGCCGTTGACGAACTTATGGCTGTCTTCTGCGCCGAACGATTTCGCCAGTTCGATCGCTTCGTTAATGGCCACTTTGTATGGCACATCGCTACGTTTAGACAGTTCGTACAGCGCAATGCGCAGTACTGCTTTTTCTACCTGTCCCAGTTCTTCCAGCAGGCGGGACAGGTATGGCTTCATCAGTCCGTCGAGGTATGCGGTATTAGTCGCCACCCCGGCCAGCAGCTCACGGAAGTACAGGACGTCAACGTCTTTTACATCCTGTTCAGCCAGGAACTGGTATTCAACATCAGCGATGTCGTTCTGGGACAACTGCCAGGAGTAGAGCGCCTGGACGGCACACTCACGAGCGCGGCGACGAGCAGCAGGTTTCACGGATTTCCCCTTACTAATTTCAGGCCTTGATGGCTTTCAATACATTAATCATTTCAAGCGCGGTCAGTGCAGCTTCTGCACCTTTGTTGCCAGCTTTGGTGCCAGCACGTTCGATCGCTTGTTCAATGCTTTCAGTGGTCAGAACCCCAAAAGCAACCGGAATTTCGCTGTCCTGGGCAACATGCGCCAGGCCGTTGCTTGCACCACCAGCGACATATTCAAAGTGGGCAGTGCCACCACGAATAACCGTACCCAGCGCAATCACCGCGTCGTATTTACCGGTTTTAGCCAGTGCACCCGCCGCCAGCGGCAGCTCATAGGCACCAGGCACCCAAACAACGGTAATGTTTTCATCTTTTACCTGACCGATACGTTTCAGTGCGTCAATTGCACCTTCCAGCAGGCTGTCATTGATAAAGTTGTTGAAACGCGCGATGGTGATGGCGACGCGAGCGTCCGGGGTAGCAACGTTAGCTTCAATAATGTTCATTTTCTTCCTTCGGGTTCGAGTATGGCCCCGCAGGGGGGCGGATTTTAGCATAATATTTCGTGCGCTGCTTCCCTTTCGAGCCGGGAGATCATGCACCTACTAAATGCAGGCAAACATCCGGGCCTACATGACGTATCTCTTTGAATTTAAATTGGGGGGCGTCGGCTAATTTCTCAAGCCCTGGCAGCGAGCATAATCCACGGGCGTCGCTGCCTAATAGTTTAGGTGCGATATAGACAATCAGCTCATCGACTAAACCCGCCTGCAGCAATGCGCCAGCGAGCGTTGGCCCCGCTTCCACCCAGATGCTGTTAATTTGCTGTTTACCCAGTTGCATCATCAGTACAACCAGATCCAGATGACCTTTATGCGCTGGAATCAGCAAGGTACGCACCGTTTCCGGCCACTCACGAGAATCTTCCTGCGTACGCGCGAACCAGGTTTCGCCGGGCTGCTGCACAATGCGATGTACCGGCGTCACGCGATTTTGGCTATCAATCACAATACGTATCGGCTGACGGAGATTTTGTTGCGGATAGAGCGCCTGAGTTTGTTCATCCAGTTCAGACCAACGCACCGTTAAGGCAGGATCATCCGCCAGCACCGTGGCGCTGCTGGTTAAAATGGCATGACTTTGCGCGCGCAGTAGTTGTACATCACGCCGCGCCTGGGGCGAAGTGATCCACTGGCTTTCGCCGCTCGCCATCGCCGTGCGACCATCAAGCGATGCGCCAAGTTTTAACTGAATATAAGGAAAGCCGGTGCGCATCCGCTTGAGAAAGCCTTTATTCAATTGCTCGGCTTCACTCATCATCAGGCCGTGGCTGACGTCAATGCCAGCCTGTTGCAGACGGTAAAGTCCACGCCCAGCGACCTGCGGGTTAGGATCTTGCATCGAGGCAACCACGCGCGCTACGCCAGCGGCGATGAGTGCGTCACAGCACGGTGGCGTACGACCATGATGGCTACAGGGTTCGAGTGTGACATAGGCGGTCGCACCTTTGGCTTTTTCACCCGCCATACGCAACGCGTGTACTTCGGCATGTGGTTCACCCGCACGTTGGTGGTAACCTTCACCGACAATTTCGCCATCTTTGACAATGACGCACCCGACATTCGGGTTGGGATGCGTGGTAAAACGTCCTCGTTGCGCCAGCTTTAGCGCCCGCGCCATGTAATACTCGTCCTGCACGGCTTAGTCCTCCAGGCGCGCGATCTCTTCGCCAAATTCTTTGATATCTTCGAAACTGCGGTAGACAGAGGCAAAACGGATATAGGCGACTTTATCGAGCTTTTTCAATTGCTCCATCACCAGATTGCCAATCATCTTGCTCGGCACTTCGCGCTCACCGGTGGCGCGCAGCTGCGATTTAATATGATTGATTGCCATTTCGACGTCATCGGAACTCACCGGACGTTTTTCCAGCGCCCGCAGCATTCCGCTACGCAATTTCTCTTCATTAAACGGTTCACGCACGTCGTTGCTTTTTACAACACGCGGCATAACCAGCTCCGCCACTTCAAAGGTGGTGAAACGTTCATTACAC
+>k105_0 flag=0 multi=12.0000 len=13602
+ACTACACTATGTGGGCATTTTTTTAAGGGGTGGTAATGAACGATTATAAAATGACGCCAGGTGAGAGGCGCGCGACCTGGGGTTTAGGGACCGTATTCTCGTTGCGCATGCTGGGCATGTTTATGGTTCTGCCGGTTCTGACCACGTACGGCATGGCTCTGCAAGGTGCCAGCGAAGCATTAATCGGTATTGCCATTGGTATTTATGGTCTGACTCAGGCCGTTTTTCAGATTCCGTTTGGCCTGCTTTCCGACCGCATTGGTCGCAAACCATTAATTGTCGGTGGGCTGGCGGTGTTTGCCGCCGGTAGCGTTATCGCTGCGCTTTCCGACTCCATCTGGGGAATTATTCTGGGCCGGGCGCTACAAGGCTCTGGAGCAATTGCCGCCGCCGTTATGGCGCTGCTTTCCGATCTCACGCGCGAACAAAACCGCACCAAAGCGATGGCGTTTATCGGCGTGAGCTTTGGCATTACCTTTGCCATTGCGATGGTGCTTGGCCCGATCATCACTCACAAACTTGGGCTGCACGCGCTGTTCTGGATGATCGCTATTCTGGCAACAACCGGCATTGCGTTGACCATTTGGGTTGTGCCCAACAGTAGCACTCACGTACTTAATCGTGAGTCCGGAATGGTGAAAGGCAGTTTCAGTAAAGTGCTGGCGGAACCGCGGCTGCTAAAACTCAACTTTGGCATTATGTGTCTGCACATGCTTCTGATGTCTACGTTTGTTGCCCTGCCCGGACAGCTAGCTGATGCGGGGTTCCCGGCGGCTGAACACTGGAAGGTCTATCTGGCGACGATGTTAATCGCCTTTGGCTCGGTCGTGCCTTTCATTATCTACGCTGAAGTTAAGCGCAAAATGAAGCAAGTCTTTGTCTTCTGCGTCGGGTTGATCGTGGTTGCGGAAATTGTGTTGTGGAACGCACAAACGCAGTTCTGGCAACTGGTGGTCGGCGTGCAGCTTTTCTTTGTGGCGTTTAATTTGATGGAAGCCCTTCTGCCCTCACTTATCAGTAAAGAGTCGCCAGCAGGTTACAAAGGTACGGCGATGGGTGTCTACTCCACCAGCCAGTTTCTTGGCGTGGCGATTGGCGGTTCGCTGGGCGGCTGGATTGACGGCATGTTTGACGGTCAGGGGGTATTTCTCGCTGGCGCAATGCTGGCCGCAGTGTGGCTGGCAGTCGCCAGTACCATGAAAGAACCGCCGTATGTCAGCAGTTTGCGCATTGAAATCCCGGCGGACATTGCCGCAAACGAAGCGTTAAAAGTGCGTTTGCTGGAAACTGAAGGCGTCAAAGAAGTGTTGATTGCAGAAGAAGAGCATTCAGCTTATGTGAAAATCGACAGCAAAGTGACAAATCGCTTTGAGGTTGAACAGGCAATTCGTCAGGCATAAAAAACGCGGCGAATTGCCTGCTGCGCTACGCTTACCAGGCCTACAAAGTTCTTGAGTTACAAACCGTTGTAGGCCGAATCAGGCGTTCATGCCGCATCTGACATGAACAAAACGCACATTGTCGCGATTAATCGCGGAAGTTTTTGAACTGGAACGGCTGGCCGAGATCGCCACCACGTACCATCGCCATGACAGCCTGCAAATCATCACGAGATTTGCCAGTCACACGGATCTCATCGCCCTGAATTTGCGCCTGCACTTTCAGTTTGCTGTCTTTAATCATCTTGACGATTTTCTTCTGGGTCGCGCTCTCAATGCCCTGTTTCAGTTTCGCTTCCACAAACCAGGTTTTACCGCTATGAACGATATTTTCCGGTACATCCAGTGAACTGCCTTCAATGCCGCGCTTCAGCAGCTTGGCACGCAGAATATCCAGCAACTGATTGACCTGGAAGTCGGACTCGCTCAACACTTTGATGGTTTTGCTGGCGTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGAAGTCAAAACGGGACTCCACTTCGCGACTCGCGTTATCGACCGCGTTACGTGCTTCCTGAAGATCAACTTCAGAGACAATATCGAAAGATGGCATCTTTTCCTCTCCCTTCATTTTTGATGCGAAGCATAATACCTGCAAAGTTAAATAACCAACAGTCCTGCACCAGGACGTATCCCTTAATTGTGCATAGTCGCAACAGCATGCACAATTAAGGGATAGCCTTATTGAACACCCGGAGTGGTTGCGGGTGAGGAGGAACAATGAAAATTACCGTATTGGGATGCGGTGCCTTAGGGCAATTATGGCTTACAGCACTTTGTAAACAGGGTCATGAAGTTCAGGGCTGGCTGCGCGTACCGCAACCTTATTGTAGTGTGAATCTGGTTGAGACAGATGGTTCGATATTTAACGAATCGCTGACCGCCAACGATCCCGATTTTCTCGCCACCAGCGATCTGCTCCTGGTGACGCTGAAAGCATGGCAGGTTTCCGATGCCGTCAAAAGCCTCGCATCCACACTGCCTGTAGCTACGCCAATACTGTTAATTCACAACGGCATGGGCACCATCGAAGAATTGCAAAACATTCAGCAGCCATTACTGATGGGCACCACCACCCATGCCGCCCGCCGCGACGGCAATGTCATTATTCATGTGGCAAACGGAATCACGCATATCGGTCCGGCACGGCAACAGGATGGCGATTACAGTTATCTGGCGGATATTTTGCAAACCGTGTTGCCTGACGTTGCCTGGCACAACAATATTCGCGCCGAGCTGTGGCGCAAGCTGGCCGTCAACTGTGTGATTAATCCACTGACTGCCATCTGGAATTGCCCGAACGGTGAATTACGTCATCATCCGCAAGAAATTATGCAAATATGCGAAGAAGTCGCGGCAGTGATCGAGCGCGAAGGGCATCATACTTCAGCGGAAGATTTGCGTGATTACGTGATGCAGGTGATTGATGCCACAGCGGAAAATATCTCGTCGATGTTGCAGGATATCCGCGCGCTGCGCCACACCGAAATCGACTATATCAATGGTTTTCTCTTACGCCGCGCCCGCGCGCATGGGATTGCCGTACCGGAAAACACCCGCCTGTTTGAAATGGTAAAAAGAAAGGAGAGTGAATATGAGCGCATCGGCACTGGTTTGCCTCGCCCCTGGTAGTGAAGAGACTGAAGCCGTCACCACTATCGATCTGCTGGTTCGCGGCGGTATCAAAGTCACCACTGCCAGCGTCGCCAGCGATGGCAACCTGGCCATTACCTGCTCGCGCGGCGTGAAGCTGCTGGCGGATGCGCCGCTGGTCGAGGTGGCTGATGGCGAATATGACGTGATCGTACTGCCTGGTGGCATTAAAGGCGCAGAGTGTTTTCGCGATAGTACCCTGCTGGTTGAAACCGTTAAACAGTTCCACCGTTCCGGGCGTATCGTCGCGGCTATTTGCGCCGCGCCAGCCACCGTGCTGGTACCGCACGATATCTTCCCGATTGGCAATATGACCGGCTTCCCGACGCTGAAAGACAAAATTCCCGCCGAACAATGGCAGGACAAGCGCGTCGTCTGGGATGCACGGGTAAAATTGCTGACCAGCCAGGGGCCGGGTACGGCTATTGATTTTGGTCTGAAAATTATCGACCTGCTGGTTGGGCGCGAGAAAGCCCATGAAGTGGCATCACAACTGGTGATGGCGGCAGGGATTTATAATTATTACGAGTAGTGTCGGATGCGGCAAACGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTATGGGCGATACACCTTCACATTGTTAAAGCCCTGCTCGCGCAGATAGAGCGCCTGCAGACGGCTCATCACCCCGCGCTCACACCACAGTAGCCAGGTTCTGTTCTGGTCGAGATCGCCAAATTTGGTGCTCAGTTTATAGAACGGCAGAGAAACCACGTCAATCCCTTCGACTTTCAGTGGCTTATCTTCCTGCTCATCGACAGAACGGATATCGAGGATCACGTCGTTCGGGCCAAAGCCATTGACGGTTTCCACTTCCACCACTTCCTGCTCGGTCTGCTGGGCGATTTCGCGGATATCAACGTTATTCGCTTCCTCAACCACTTTATCGAGAATACTGAAGTCGAACTTCTCTTCTTCCGCTTCAATCTTCGATTTAACCGCTTTCACCGTCGGGCTTTTGGAGATCACGCCACAATATTCTGGCATCGTGCGAGCAAAGTCTTCAGTGCCAATCTGGCGGGCCAGGTTGATGATGTGCTCTTTGTCGTAAGAAATCAGCGGACGCAGGATCAGCGTGTCAGAGACGTTATCAATCAGGCGCAGGTTGGTCAGCGTCTGACTGGACACCTGGCCGAGCGCTTCGCCGGTGACCAGCGCCTGTACGCCGTAACGTTCAGCCACTTTAGACGCGGCACGCACCATCATACGTTTGAGGATAACGCCCATCTGACCGTCGTCGATTTTCTCGAGAATTTCCCCAACGACCGGTTCGAAATTAATAGCGACAAAACGCACGCGGTGGGAGCTGCCAAAACGGTTCCACAGATAATGCGCCACCTGACGCACGCCAATTTCATGCGCCGCGCCGCCAAGGTTAAAGAAACAGTAATGCACGCGGCAGCCGCGACGCATCAACATATAACTGGAAACACCGGAGTCGAAACCACCGGAAATGAGCGACAGCACGTCTTCCTGGGTGCCGATCGGGAAACCGCCAATACCTTCGTAGCGGCCTTTAATCAGCAGGAGACGATCGTCTTCCACTTCCAGATGGACAGTCACTTCCGGATTGGTCAGCTTCACGCGCGCGGACTCAATATGCTGATTTAAACCGCCGCCGACGTAACGTTCCACATCAATCGAGCTAAAATCATGTTTGCCACGACGCTTCACGCGTACGCAGAAGGTTTTGCCTTCCAGCTGATCGCGGTACTGAACCAACGCTTTCTCGAAAATATCGTGCATGTCGGTAAACGGCACGTCTTCGACTTCGAGAATATGGTGGATACCCGGAATACGGGTCAGAGCGTCGCGAATAGCCAGACGCTGGTTTTCATCTTTCGCGCGAACTTCGATGTTATCCCAGTGGCGGACGACAGCGAGCGTCTCATCATAGTGCTTTAAAACGTTACGAATGTTCCCGGTAAGGATTTTTATAAAGCGCAAGCGCACAGATTGGCTTTTGATGGTGATTTCCGGGAACAATTTAATGATAAACTTCATGGCGGCAATGGTTCGTTGGCAAGCCTTAAGCGACTTGTATAGGGAAAAATACAGCAGCCCACACCTGCGGCTGCATCCAGGCGCGGAAGTATACCACTAACATCGCTTTGCTGCGCACATCACCTTACCATTGCGCGTTATTTGCTATTTGCCCTGAGTCCGTTACCATGACGGGGCGAAAAATATTGAGAGTCAGACATTCATTATGCCGAAGAAAAATGAGGCGCCCGCCAGCTTTGAAAAGGCGCTGAGCGAGCTGGAACAGATTGTAACCCGTCTGGAAAGTGGCGACCTGCCGCTGGAAGAGGCGCTGAACGAGTTCGAACGCGGCGTGCAGCTGGCACGTCAGGGGCAGGCCAAATTACAACAAGCCGAACAGCGCGTACAAATTCTGCTGTCTGACAATGAAGACGCCTCTCTAACCCCTTTTACACCGGACAATGAGTAATGGACTTTCCGCAGCAACTCGAAGCCTGCGTTAAGCAGGCCAACCAGGCGCTGAGCCGTTTTATCGCCCCACTGCCCTTTCAGAACACTCCCGTGGTCGAAACCATGCAGTATGGCGCATTATTAGGTGGTAAGCGCCTGCGACCTTTCCTGGTTTATGCCACCGGTCATATGTTTGGCGTTAGCACAAACACGCTGGACGCACCCGCTGCTGCCGTAGAGTGTATCCACGCTTACTCATTAATTCATGATGATTTACCGGCGATGGATGATGACGATCTGCGCCGCGGTTTGCCGACCTGCCATGTGAAGTTTGGCGAAGCAAACGCGATTCTCGCTGGCGACGCTTTACAAACGCTGGCGTTCTCGATTCTAAGCGATGCCGATATGCCGGAAGTGTCGGATCGCGACAGAATTTCGATGATTTCTGAACTGGCGAGCGCCAGCGGTATTGCCGGAATGTGCGGTGGTCAGGCACTAGATTTAGACGCGGAAGGCAAACACGTACCTCTGGACGCGCTTGAGCGTATTCATCGTCATAAAACCGGCGCATTGATTCGCGCCGCCGTTCGCCTTGGTGCATTAAGCGCCGGAGATAAAGGGCGTCGTGCTCTGCCAGTACTCGACAAGTACGCAGAGAGCATCGGCCTTGCCTTCCAGGTTCAAGATGACATCCTGGATGTGGTAGGAGATACTGCAACGTTGGGAAAACGCCAGGGTGCCGACCAGCAACTTGGTAAAAGTACCTACCCTGCACTTCTGGGTCTTGAGCAAGCCCGGAAGAAAGCCCGGGATCTGATCGACGATGCCCGTCAGTCGCTGAAACAACTGGCTGAACAGTCACTCGATACCTCGGCACTGGAAGCGCTAGCGGACTACATCATCCAGCGTAATAAATAAACAATAAGTATTAATAGGCCCCTGATGAGTTTTGATATTGCCAAATACCCGACCCTGGCACTGGTCGACTCCACCCAGGAGTTACGACTGTTGCCGAAAGAGAGTTTACCGAAACTCTGCGACGAACTGCGCCGCTATTTACTCGACAGCGTGAGCCGTTCCAGCGGGCACTTCGCCTCCGGGCTGGGCACGGTCGAACTGACCGTGGCGCTGCACTATGTCTACAACACCCCGTTTGACCAATTGATTTGGGATGTGGGGCATCAGGCTTATCCGCATAAAATTTTGACCGGACGCCGCGACAAAATCGGCACCATCCGTCAGAAAGGCGGTCTGCACCCGTTCCCGTGGCGCGGCGAAAGCGAATATGACGTATTAAGCGTCGGGCATTCATCAACCTCCATCAGTGCCGGAATTGGTATTGCGGTTGCTGCCGAGAAAGAAGGCAAAAATCGCCGCACCGTCTGTGTAATCGGCGATGGTGCGATTACCGCAGGCATGGCGTTTGAAGCGATGAATCACGCGGGCGATATCCGTCCTGATATGCTGGTGGTTCTCAACGACAATGAAATGTCGATTTCCGAAAATGTCGGCGCGCTCAACAACCATCTGGCGCAGCTGCTTTCCGGTAAGCTTTACTCTTCACTGCGCGAAGGCGGGAAAAAAGTTTTCTCTGGCGTTCCGCCAATTAAAGAGCTGCTCAAACGCACCGAAGAACATATTAAAGGCATGGTAGTGCCTGGCACGTTGTTTGAAGAGCTGGGCTTTAACTACATCGGCCCGGTTGACGGTCACGATGTGCTGGGGCTTATCACCACGCTTAAGAACATGCGCGACCTGAAAGGCCCGCAGTTCCTGCATATCATGACCAAAAAAGGTCGTGGTTATGAACCGGCAGAAAAAGACCCAATCACTTTCCACGCCGTGCCTAAATTTGATCCCTCCAGCGGTTGTTTGCCGAAAAGTAGCGGCGGTTTGCCGAGCTATTCAAAAATCTTTGGCGACTGGTTGTGTGAAACGGCAGCGAAAGACAACAAGCTGATGGCGATTACTCCGGCAATGCGTGAAGGTTCCGGCATGGTCGAGTTTTCACGTAAATTCCCGGATCGCTACTTCGACGTGGCAATTGCCGAGCAACACGCAGTGACCTTTGCCGCCGGTCTGGCGATTGGTGGGTACAAACCCATTGTCGCGATTTACTCCACTTTCCTGCAACGCGCCTATGATCAGGTGCTGCATGACGTGGCGATTCAAAAGCTACCGGTCCTGTTCGCCATTGACCGCGCGGGCATTGTTGGTGCTGACGGTCAAACTCACCAGGGCGCTTTTGATCTCTCTTACCTGCGCTGCATACCAGAAATGGTCATTATGACCCCGAGCGATGAAAACGAATGTCGCCAGATGCTCTATACCGGCTATCACTATAACGATGGCCCGTCCGCGGTGCGCTACCCGCGCGGCAACGCGGTTGGCGTGGAACTGACGCCGCTGGAAAAACTACCAATTGGCAAAGGCATTGTGAAGCGTCGTGGCGAGAAACTGGCGATCCTTAACTTTGGTACGCTGATGCCAGAAGCGGCGAAAGTCGCCGAATCGCTGAACGCCACGCTGGTCGATATGCGTTTTGTGAAACCGCTTGATGAAGCGTTAATTCTGGAAATGGCCACCAGCCATGAAGCGCTGGTCACCGTAGAAGAAAACGCCATTATGGGCGGCGCAGGTAGCGGAGTGAACGAAGTGCTGATGGCCCATCGTAAACCAGTACCCGTGCTGAACATTGGTCTGCCGGACTTCTTTATTCCGCAAGGAACTCAGGAAGAAATGCGCGCCGAACTCGGCCTCGATGCCGCCGGTATGGAAGCCAAAATCAAGGCCTGGCTGGCATAATCCCTACTCCACTCCTGCTATGCTTAACAAATTATTCATAGACTCTAAATAATTCGAGTTGCAGGAAGGCGGCAAACGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAACGAATGCAGCCGCAGCACATGCAACTTGAAGTATGACGAGTATGGCAGGAGTGGCAGCATGCAATACAACCCCTTAGGAAAAACCGACCTTCGCGTTTCCCGACTTTGCCTCGGCTGTATGACCTTTGGCGAGCCAGATCGTGGTAATCACGCATGGACACTGCCGGAAGAGAGTAGCCGTCCCATCATTAAACGCGCGCTGGAAGGCGGCATAAATTTCTTTGATACCGCCAATAGCTATTCCGATGGTAGCAGCGAAGAGATCGTTGGTCGCGCACTGCGGGATTTCGCCCGTCGTGAAGACGTGGTCGTTGCCACCAAAGTGTTCCATCGCGTTGGTGATTTACCGGAAGGATTATCCCGTGCACAAATTTTGCGCTCTATCGACGACAGCCTGCGACGTCTCGGCATGGATTATGTCGATATCCTGCAAATTCATCGCTGGGATTACAACACGCCGATCGAAGAGACGCTGGAAGCTCTGAACGACGTGGTAAAAGCCGGGAAAGCGCGTTATATCGGCGCGTCATCAATGCACGCTTCGCAGTTTGCTCAGGCACTGGAACTCCAAAAACAGCACGGCTGGGCGCAGTTTGTCAGTATGCAGGATCACTACAATCTGATTTATCGCGAAGAAGAGCGCGAGATGCTGCCACTGTGTTATCAGGAGGGCGTGGCGGTGATTCCGTGGAGCCCGCTGGCGCGGGGGCGACTGACGCGTCCGTGGGGAGAAACTACCGCACGACTGGTGTCTGATGAGGTGGGGAAAAATCTCTATAAAGAAAGCGATGAAAATGACGCGCAGATCGCAGAGCGGTTAACGGGCGTCAGTGAAGAACTCGGTGCAACACGAGCACAAGTTGCGCTGGCCTGGTTGTTGAGTAAACCGGGCATTGCCGCACCGATTATCGGTACATCGCGGGAAGAACAGCTTGATGAGCTGCTGAACGCGGTGGATATCACTTTGAAGCCGGAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATGCGGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGCAACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGAATGCCCAGCGGCCAGTGATGACCAATAAAGTACAGGATGCCAGCGGAGATCACCCCGGCGACAATATCATCTATCATGATCCCCATGCCGCCATGCACATTGCGATCAAACCAGCGGATCGGCCACGGTTTCCACATATCCAGAATACGGAAAATCACAAACCCGGCGGCAACCCACTGCCAGTCATTGGTCGGCAGCGCCATGAGCGTGATCCACATACCAATAAATTCGTCCCAGACAATGCTGCCGTGATCGTGCACGCCCATATCTTTTGCGGTCTGATGACAAAGATAGACGCCGATACAGATCCCCAGCATCACCACCAGCGAGTAGAGCTGCCAGGGCAAAAAGGTCATCAGATACCAGAACGGAATCGCTGCCAGCGAGCCCATCGTCCCAGGAACGATCGGGCTTAATCCACTTCCGAATCCGACAGCAAGTAGATGCCACGGATTACTCATCTTCAGGCGACTTTTCGCGACATCTTTATGGCGTGGCAAAATGGTCATATCCTTTCCAGTCTAATGTAACAGGTTCGCCGTCACGAATAAAACAAAGCCCTTCGATATCGGCGGTCATTTGCCCGATACAGGTAAACGGTACGCCCAGGTGTCCGAGAGCCACATCCAGCGCGCCACGGTTCAGTTCCGGCACAGTGAAACACAACTCGTAATCTTCACCGCCAGAGAGCGCCCAGCGCAGCGCCTGTTCCGGTTCAACATGGCGAGAAAGCGCATCAGAAAACGGCAGCAATGCCAGGTCAATACGTGCGCCGCAGTCGCTGGCTTTCACGATATGCCCGAGATCGGAAATCAGACCGTCAGAGAGATCGATAGCTGAATTTGCCAGATCGCGCAGTGCCTGCCCCTGTAAAATACGCGGCGATGGACGGAGATGACGTTTGATCAAGTAGTCAGCATCTTTAGCATCGGCAACCTGCAAACGGTTTTGCAAAATCGCCAGCCCGGCGGCGCTATCGCCCGGTGTACCGGTCACATAGATCCAGTCACCCGGTTTCGCCCCAGAGCGCGTTAAGGCTCGTCCCATCGGAACAAAGCCGTGGATACCCAACGTCATTGATAATGGCCCACGCGTGGTATCGCCGCCAATGAGTTGCATATCGTAATAATTGAGAAGATCAAACAAACTGTCGCTGAAGGACTCAAGCCACGCTTCGTCTACGTCCGGCAAGGTTAATGCCAGCGTCAGCCAGGCCGGATCGGCCCCCATCGCTGCCAGATCGCTTAGGTTCACCGCCAGTGCTTTATACGCCAGATCAGCAGGATCGATATCAGGGAGGAAGTGGTTGCCCGCCACCAGCGTATCAGTGCTGATCGCCAGGGTCTGTTTCTCGGGGATATTGAGAAGTGCGCAATCGTCGCCGATGCCCAGTTCGACATCAAGACGAGAACTTCTTACACGGTCAAAATAACGGGCAATCAGGGAGAACTCGCCACATGCCATACGTTATGCCTCAGCAGGTAAAAAAGAAAAGGCCGGCGATCATGGAACGGTCTTCCGTGAATCTACCGGCCTGGATATCACTTTTTGTTAGGGCGAATCACAGGTGCTGCTTTATCGAGTACGCCGTTGACGAACTTATGGCTGTCTTCTGCGCCGAACGATTTCGCCAGTTCGATCGCTTCGTTAATGGCCACTTTGTATGGCACATCGCTACGTTTAGACAGTTCGTACAGCGCAATGCGCAGTACTGCTTTTTCTACCTGTCCCAGTTCTTCCAGCAGGCGGGACAGGTATGGCTTCATCAGTCCGTCGAGGTATGCGGTATTAGTCGCCACCCCGGCCAGCAGCTCACGGAAGTACAGGACGTCAACGTCTTTTACATCCTGTTCAGCCAGGAACTGGTATTCAACATCAGCGATGTCGTTCTGGGACAACTGCCAGGAGTAGAGCGCCTGGACGGCACACTCACGAGCGCGGCGACGAGCAGCAGGTTTCACGGATTTCCCCTTACTAATTTCAGGCCTTGATGGCTTTCAATACATTAATCATTTCAAGCGCGGTCAGTGCAGCTTCTGCACCTTTGTTGCCAGCTTTGGTGCCAGCACGTTCGATCGCTTGTTCAATGCTTTCAGTGGTCAGAACCCCAAAAGCAACCGGAATTTCGCTGTCCTGGGCAACATGCGCCAGGCCGTTGCTTGCACCACCAGCGACATATTCAAAGTGGGCAGTGCCACCACGAATAACCGTACCCAGCGCAATCACCGCGTCGTATTTACCGGTTTTAGCCAGTGCACCCGCCGCCAGCGGCAGCTCATAGGCACCAGGCACCCAAACAACGGTAATGTTTTCATCTTTTACCTGACCGATACGTTTCAGTGCGTCAATTGCACCTTCCAGCAGGCTGTCATTGATAAAGTTGTTGAAACGCGCGATGGTGATGGCGACGCGAGCGTCCGGGGTAGCAACGTTAGCTTCAATAATGTTCATTTTCTTCCTTCGGGTTCGAGTATGGCCCCGCAGGGGGGCGGATTTTAGCATAATATTTCGTGCGCTGCTTCCCTTTCGAGCCGGGAGATCATGCACCTACTAAATGCAGGCAAACATCCGGGCCTACATGACGTATCTCTTTGAATTTAAATTGGGGGGCGTCGGCTAATTTCTCAAGCCCTGGCAGCGAGCATAATCCACGGGCGTCGCTGCCTAATAGTTTAGGTGCGATATAGACAATCAGCTCATCGACTAAACCCGCCTGCAGCAATGCGCCAGCGAGCGTTGGCCCCGCTTCCACCCAGATGCTGTTAATTTGCTGTTTACCCAGTTGCATCATCAGTACAACCAGATCCAGATGACCTTTATGCGCTGGAATCAGCAAGGTACGCACCGTTTCCGGCCACTCACGAGAATCTTCCTGCGTACGCGCGAACCAGGTTTCGCCGGGCTGCTGCACAATGCGATGTACCGGCGTCACGCGATTTTGGCTATCAATCACAATACGTATCGGCTGACGGAGATTTTGTTGCGGATAGAGCGCCTGAGTTTGTTCATCCAGTTCAGACCAACGCACCGTTAAGGCAGGATCATCCGCCAGCACCGTGGCGCTGCTGGTTAAAATGGCATGACTTTGCGCGCGCAGTAGTTGTACATCACGCCGCGCCTGGGGCGAAGTGATCCACTGGCTTTCGCCGCTCGCCATCGCCGTGCGACCATCAAGCGATGCGCCAAGTTTTAACTGAATATAAGGAAAGCCGGTGCGCATCCGCTTGAGAAAGCCTTTATTCAATTGCTCGGCTTCACTCATCATCAGGCCGTGGCTGACGTCAATGCCAGCCTGTTGCAGACGGTAAAGTCCACGCCCAGCGACCTGCGGGTTAGGATCTTGCATCGAGGCAACCACGCGCGCTACGCCAGCGGCGATGAGTGCGTCACAGCACGGTGGCGTACGACCATGATGGCTACAGGGTTCGAGTGTGACATAGGCGGTCGCACCTTTGGCTTTTTCACCCGCCATACGCAACGCGTGTACTTCGGCATGTGGTTCACCCGCACGTTGGTGGTAACCTTCACCGACAATTTCGCCATCTTTGACAATGACGCACCCGACATTCGGGTTGGGATGCGTGGTAAAACGTCCTCGTTGCGCCAGCTTTAGCGCCCGCGCCATGTAATACTCGTCCTGCACGGCTTAGTCCTCCAGGCGCGCGATCTCTTCGCCAAATTCTTTGATATCTTCGAAACTGCGGTAGACAGAGGCAAAACGGATATAGGCGACTTTATCGAGCTTTTTCAATTGCTCCATCACCAGATTGCCAATCATCTTGCTCGGCACTTCGCGCTCACCGGTGGCGCGCAGCTGCGATTTAATATGATTGATTGCCATTTCGACGTCATCGGAACTCACCGGACGTTTTTCCAGCGCCCGCAGCATTCCGCTACGCAATTTCTCTTCATTAAACGGTTCACGCACGTCGTTGCTTTTTACAACACGCGGCATAACCAGCTCCGCCACTTCAAAGGTGGTGAAACGTTCATTACAC
+>k105_0 flag=0 multi=12.0000 len=324
+CGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACAGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACGGATGATGAGCGGACTCACCGGTACCATTACGACAGTCAGCACCGGCTGGTGCACTACACGCGGACACAATATGAAGAGCCGCTGGTCGAAAGTCGCTATCTTTACGACCCGCTGGGCCGCAGGGTGGCAAAACGGGTATGGCGACGTGAACGGGACCTGACGGGCTGGATGTCGCTGTC
+>k105_0 flag=0 multi=13.0455 len=3755
+ACCATATTGCTTCAAAAAATCGAGATGTGTTTCCCCAAAATCCTCTATATCTTCCCAACCTTCCGCACCAGAAATAACGGCACAAATAGTCAACAGTAGAATATCTGACAATTTATGTTCTACTTTCCAGGCTTGTCTGTAATCGGGGATAATAGAAATATGTTCCATCAGTTTTTTAAGTTCCATTTTGTTCTCCTTAATTATGTAAGGAGTATTTGATCATGTATAAGCAATAAAAACAGCTTCAGGTAATGAGGAATATCTCAATTTTTAAACATAAAATGCGAATTATTTAGTACAAAAAGTGAACTTCTGATGATCTTTCCCTGGCAGGTTGCCCCACTCATCGTATTCTGCGCACCATTCTATTGCCCCTTCCGTGCTGATAAGCACTAGCGGCAGGTTATTCGGTTTGCGTCGTTGAGTTCACTACACTAAAAATCCGTGCCCATATAACCCAAGTCGGAGGCATGCCTTCCTCTGGTTCGTTCCATCTAAAATGTCTATACATAACATGGTTATTCAATTATTTTTTCTTTGAATTTATTCTCAATCCAGCTGTGTTTATACCTGATGAAAATTTGACACTCACCAATATTATCAATGTCTCCAGAATTTGTATTTGGAATTTGTCCAACTGCAACTATAGTTGATTCAAAATATTCAACATTGACATTATCTGTAATTATTGAAATTATATAATCATCTGGAATAGAGCCATTAGGAGTTATATTGAAGAAACTAACATCTGAAAATACCAAATAACCATCTTCTAAGTCTTCATTATCATAAAAAATCCATTCTGTTGTACCATAGGCTATCCTTGAGATTAAATTAACCTGAATTCTAATTTGTTTACTCCATAAATCAAATTCAATTTTTTTATTGCTCGATCACCAAGATATATTCTATCAAACATATTACCCCCCTATTCTAAAAATACTCAGGCATCCCGCACATTATATCAGCCTCATCTTGATTGCTTCCCGTTTTCCGATACGGCGGCGCGGGGAGTCATAAAGGTAAGAAATTTCCAGCAGTACGGCGTCCTATTGTTCACGATGGTAATGCACCAGCCAGTATTGGCTATCGTAGTGATAACCGTGTAACCTGCCGCCGCATCGCGTATCTAATGTTCATTCTTTTCCATAAACCGTCCGTACACATTGTGATAGTAAAAATACAATACATCTTCGCTGATGCGGTTATTCAGCTGCATGTGGGAAGCGCCGAATACTGCTCCCGGTATGGCCAGTAATTACTATTTAGTACGACGTTAGGGGGAGTCACTTAATCTCACAGATACTTCAAGTAACAGATGAAAATCGCTCCTGAAATGAAAAAAGAAATTTTTTGAATGTGTTCCTGTCAAATCAAGTGGTTTTTTCGTCGATATGTAGAGTCATATTGTACACAAAATAGTTACGAAACACACCTTGGTAAAATATTTGAATCGACTGTACAGTGGATTATTTTGTGTGTATTACATGCAACACTTGCCCATCTTTTTTCGCTATTAGTATTGTAAAATTTCCTCCTAACGTCTTCGGTTGTTTTCCCTCGATTTTCCAACAATTATTGTCATCTGTAATACTATATGGTTTCTGAAATTCTGCTTTTTCTTTCCCGTATACATATTTAATGTAAACATATGATAATTCCAAAGCCATTTCACGACTATTTACTAAAATTTCCACTGGATTTTCTTTTCCAAATACTGAGTGTGATATTGTAAACAATATCATAATAAGTAATATTAGTGAGTTTCTCGTGTTCTACACCTATCGAATCTCAAAAGTTGAGGGTAAAACATTACATTCAGAATATATGATATTCTTACCATCGGAATCCATTTTTCCAAATCGACCTTCTGGTGTACCTGGATATCCATTAAGAACATGTTTTTCCGAATGGTTAATTTATTTTCTCAGGAAGATGTTTTATTTTTCTTCACTACGAAGCAGTTCATGCTGTATTTTTGTTAAACATTCGTAAGACTCATCTTTGTTCGGGAGATGTGCTGTCATTCGAGCATAAGTTGGCTTCTCTTCTTTAAAATATTTAACCATGATTGAATTATCAAGGACTGCCAACAACTGAGCTGGATCACTGCTCTTTTTTTGATAGATACCCGCTCTTATATAACTTCTAAACCGATCGCCGAGAAACGCCGTTTTTTCTGCTGTATTTATCAACTCCTGCAACGTTCCTTTGATGGCATGATTTTCATTAAGGCGTAGTGACCCAACGCGAATTAAGAGTCTCGCCCCGCTTGGTGTGAATTTATTATTTTTACATGTGCCCAGTTCTGTTTGCCAATAATACTCACCGATGTCCTCATTCTGATACCATCTCCACATGGCTTTATTATTTAAGACAGGAAACGCGGAAAAAATAGTACCCTTAGCGAAAATAGTAAAACAATCATGATCTTTAGCTTGTATTTCGCAATCAGCTATAACACCAAAACTAACAAATATCATCAGCAAAAAGAACAAAACTCTTTTCATTTTCTTATTCCTCTCGATGTTCTCTGTTTCATCTTAGCTAAAATTTCACCCAAATCATCTATCCCTGCTGTTGCTGGCCCATCGGGTTTATTAATGTCTGGGAATAAATAGGGTTCTGCACAAGTATATCCTGGTGGTAATTGAGTTGTTGGCCAATTTGTCTGTGGCAGGTAATCACTTGCTGTCTTTGTATCCATCCCTGGATACTGGGAATCATCCTGTGGCGTACAAGTCAGATTTGGTTTTACCCACTTCCTGCAATACAGTGTGTAGTCGTAAGGGCTTAATGCTCTGAAGAATGTTTTGAAAACATTAGGCGCACTACTGGCCTGGTCAATAGGATATGGCAGTCTTAATTGTTTCGCTATGTCCGGCAATTTACTTGGATCGGGCGTAGGCGGTTTGTTGGGTCTCGCTCCATATCCGCCATTATTTAAGTGTCCATATTTTGATGCCAGTCCCATTGAATCTATATACTGAACCGGATTCAGCGGATACTGATAAAAATTCCATCCCCCCTTCAGCCCAATCGGATCCTGAGTGATATACCTCCCCTGCAGCGGGTCATAATAGCGGTGGCGGTTGTAATACAGGCCGGACTCCTCATCATACTGCTGCCCCGGCAGGCGGATAAGCTGCTGCAGCTGATGCGGGTTCTCTTCATTCAGCAGGTTGCCCCACTCATCGTATTCTGCGCACCATTCTGTTGCCCCTTCCTTACTGATAAGGGCCAGCGGCAGGCCGCGATGGTCGCAGTGGTACAGGTGGATTTTTCGCGCCGGCGTGTACACCGGGTCCATCTGGTTTTGCATCTGCTCCACAGTCAGGCCGCACGATGCCAGCCAGCGGCGGCTTTCCTCACTCACCCGGTCAGCCAGGATTTCACTTTCCAGCCGGTCGAGCATCTGCACCAGCACCGGCGGGAACACCACACTGCCACCGTCTTCGCCGCCGGACTGCTGAAGGGTATCCGCCAGGCTGCGGCGCTGCGTTTTCGCCAGCTCACCGGTGGCGGTTTCAACTCTGATGAGTGGCGTGAAGCTCCCCGGCTGATAAATCGTCTGGATGCGGGTTCTGTCGTTCTGTATCGTGGTCAGCCGGTCGCCGTCCCAGCCGTACCAGGTCACTTCCGGTTTCCGTGACAGCGACATCCAGCCCGTCAGGTCCCGTTCACGTCGCCATACCCGTTTTGCCACCCTGCGGCCCAGCGGGTCGTAAAGATAGCGACTTTCGACCAGCGGCTCT
+>k105_0 flag=0 multi=33.0000 len=143
+ATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGAC

Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/evolution_20260523_130651/assembly/anc_assembly/intermediate_contigs/k105.bubble_seq.fa.info

@@ -0,0 +1 @@
+15 420

Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/evolution_20260523_130651/assembly/anc_assembly/intermediate_contigs/k105.contigs.fa.info

@@ -0,0 +1 @@
+291 8148

Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/evolution_20260523_130651/assembly/anc_assembly/intermediate_contigs/k105.final.contigs.fa.info

@@ -0,0 +1 @@
+0 0

Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/evolution_20260523_130651/assembly/anc_assembly/intermediate_contigs/k105.local.fa.info

@@ -0,0 +1 @@
+276 165721

Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/evolution_20260523_130651/assembly/anc_assembly/intermediate_contigs/k117.addi.fa

@@ -0,0 +1,2 @@
+>k117_156 flag=0 multi=1.0000 len=295
+AAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCACTCACTGCGTTCGTGGTCTGTCCAACTGGCTGCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCACCCCCCCTGGAGTGCATTATGCGAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCACTCACTGCGTTCGTGGTCTGTCCAACT

Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/evolution_20260523_130651/assembly/anc_assembly/intermediate_contigs/k117.addi.fa.info

@@ -0,0 +1 @@
+1 28

Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/evolution_20260523_130651/assembly/anc_assembly/intermediate_contigs/k117.bubble_seq.fa

@@ -0,0 +1,12 @@
+>k117_0 flag=0 multi=4.6356 len=235
+TAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACAGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACGGATGATGAGCGCACCCACCAGTACCATTACGACAGTCAGCACCGGCTGGTGCACTACACGCGGACACAATATGCAGAG
+>k117_0 flag=0 multi=33.0000 len=143
+GTCAGCCTGCCGTGACGGTCATACCGGTAAAGATAGTGCGCGTCACGGGCGATACGGTTATCCGGCCACATGCTGAGGGTGCTGTCCGGGTGCAGCTCCGGGTCGGGCAGGCGGTTACCTGCCGGGTCTGTGGCATACGGGAT
+>k117_0 flag=0 multi=13.0000 len=629
+GCCAGCGGCAGGCCGCGATGGTCGCAGTGGTACAGGTGGATTTTTCGCGCCGGCGTGTACACCGGGTCCATCTGGTTTTGCATCTGCTCCACAGTCAGGCCGCACGATGCCAGCCAGCGGCGGCTTTCCTCACTCACCCGGTCAGCCAGGATTTCACTTTCCAGCCGGTCGAGCATCTGCACCAGCACCGGCGGGAACACCACACTGCCACCGTCTTCGCCGCCGGACTGCTGAAGGGTATCCGCCAGGCTGCGGCGCTGCGTTTTCGCCAGCTCACCGGTGGCGGTTTCAACTCTGATGAGTGGCGTGAAGCTCCCCGGCTGATAAATCGTCTGGATGCGGGTTCTGTCGTTCTGTATCGTGGTCAGCCGGTCGCCGTCCCAGCCGTACCAGGTCACTTCCGGTTTCCGTGACAGCGACATCCAGCCCGTCAGGTCCCGTTCACGTCGCCATACCCGTTTTGCCACCCTGCGGCCCAGCGGGTCGTAAAGATAGCGACTTTCGACCAGCGGCTCTGCATATTGTGTCCGCGTGTAGTGCACCAGCCGGTGCTGACTGTCGTAATGGTACTGGTGGGTGCGCTCATCATCCGTGCGGATAACCCCTTCCGGGATGAGGTCGGTTTTCTC
+>k117_0 flag=0 multi=3.8166 len=575
+ATGTAAAAAAATCGTCAATATTCGATAAATACGCGGTTGTTGTTGAGCATCAACTTCGTGGCTGGATGTGAGGGAGACAAATGGCTACATCGACAGTAATTCCAGGAGATATCACCACGCTAAAGGGAGATGTCAGTAAAACTAAGGAAGATATTTCCTCAATTAACGGAAAAGTATCAACGCTTCAGACTGATATGACCAGTGCAAAGCAGGATATCAGCACCAGATACACAAAAACTGAAGTTGATAATAAGCTGAAAAACAAACTGGAAGTGAACGATCTGGAAAGCGGTCGTTATGGTGGAGATTTTTACCCGTTGACTGGCCGTGAAGCGTTTTATATGTGGGGATTGGGCACGACTACAGCGGCGGCAAACCTTTATCTTAATCCTGACCCTGCAATTTCGTCTGTACTGCGGTCAACATCGTCTATTCGCTATAAACATTCAGTAGAGACGATAGATTCAGAGCACGCCGATCTCATTTTCAGGATGCGCCCTGTGTGGTACAGGTCGCAATGCGAAAATGACAGGCGTGACTGGGGATTCTACGGATTGATTGCCGAGGAAGTAGGA
+>k117_0 flag=0 multi=14.0000 len=2026
+GAATGCAGCAGCCGAAAGCGAGAGCGCGGCAGCCGGTTCTGCGACTGCAGCAGCTGGATCAGCAACTGCTGCGGCTAACAGCCAGAAAGCAGCGAAGACGAGCGAAACTAACGCAAAGTCCAGCCAGACGGCAGCGAAGACCAGCGAAACAAATGCCAAAGCCAGCGAAACTGCGGCGAAAAGCAGTCAGGATGCAGCAGCCGAAAGCGAGAGTGCTGCAGCTGGTTCTGCAAGTGCGGCGGCTGCTTCTGCCACTGCATCAGCAAACAGTCAAAAAGCTGCAAAAACCAGTGAAACCAATGCAAAGACAAGCGAGACTGCAGCGGCGAACTCGGCGCAAGCATCGGCAGCAAGCCAGACAGCAGCTAAAGCAAGTGAGGATGCAGCCAGAGAGTATGCAAGCCAGGCAGCAGAGCCGTATAAATATGTCTTACAGCCACTGCCTGATGTGTGGATACCGTTTAACGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCAAATAACCGTAGGTGATGATGTTATTAAAATGCCATCCGATAAGGTTGTTAGCTTCAAACGCGCATCAGGTGCAACATACATTAATAAATCAGGTGTATTAACCGTTGCTGAAGTTGACGAACCGCGATTTGAACGAGAAGGTTTGCTGATTGAAGGACAGAGAACAAACTATTTCAGAAATTCAAATACACCAGAAGCATGGAATAACACGGGTAGTGTGTCTGTTGAGTCGTTCGACAGTGATAAGGGGTTTAACTATGGAAGGATAACTGTTATTAATGAAAATCCGACAGCACAAGGATATCAGGCAATTGCTGTAAACACGAATGATGCTTACACCTGCCCGGCAGGTTCTTATACGACGATATCGTGTCTGACGAAAAGTGATAATTCCCGGTGTCGTGCAAGGTTCGGAAAAATGTCTGATAATGGTGCGTTTGTTTTTCATTCAGATGCAGTTCTGGATCCTGTTACGGGAAATGTTGTTCATGGAAATAATGTGACGGTGACGGCAGAAAGAGTCGGTGAATGGTGGTTGTTTACCGCCACTCTTTTTGCAGATGCGGAAATGATAATCAGCTCAAGATTTGAAATCCTGGCGATGCCTGGAATCAGTATTATCCCCAATGGCTCTACGTTAGATATTGCGATGCCTCAGGCGGAGATTGGGTCGTACAGGACGTCATTTATCATTACTGAAGGGGCTCCTGGCACTCGCTCCAGCGACATGGTGACAATACCTGTAAGAAACAATATTCACCGATTACCATTCAGTGCTCTTGTTGAAGTTAATAAAAACTGGGATATCCCTCCCAGCAAATCACCATTAATCTTTAATGTTAAAGATTATCAGGAAAATGGTCTGTTCACGCATGGATTCCGTGGTAATAATTTCTCTGATGCCGGTTCTCCTTTTATTTCTATGGGAGGGTGTAATAAATATGTGGCAACAACCCAGAGGAAAATCATTTCAGGCTTCCGTTGTGGCGCTGATGGAGATGTTCAGGCCGTATGTAATGGTGAATTATCTGTTGCGGCAAAAACAACATGGACTTCAATTGTTCCACGGGCAGTATTGCGAATTGGAGGGCAGGGCACTAATGGGGAGTATCATCTTTTTGGTCATATCCGTAATCTGCGTATCTGGCATAAAGAATTAACTGATGCGCAAATGGGGGAGAGTATTAAATGAAAGATTTAACACTCAAATTTGCAGACAGGGCCGACTTTTCGGCCTTTATGGAGAGTATTGGCTATTATGATGACGAGTCGATGCAGGATGATATTCTTATTGACGTGATAGGTAACGTGTACAAAGAAACCGGAGAACTGACTGAAGATGGCGAACCGGTATGTGTTAAGGAAGACGGATATTTTGTAAACGTGCGCATCATTAATGATGTAAAAAAATCGTCAATATTCGATAAATACGCGGTTGTTGTTGAGCATCAACTTCGTGGCTGGATGTGAGGGAGACAAATGGCTACATCGACAGTAATTCCAGGAGATATCACCA
+>k117_0 flag=0 multi=23.0000 len=254
+ATAGATTCAGAGCACGCCGATCTCATTTTCAGGATGCGCCCTGTGTGGTACAGGTCGCAATGCGAAAATGACAGGCGTGACTGGGGATTCTACGGATTGATTGCCGAGGAAGTAGGAGAAATTGCCCCTCAGTTTGTACACTGGCGACCAGCTAACGAAGATGATGCTCCTGAAGCTATTTCCAGCAATGGCCTTGTTGCCGAAGGTGTAATGTACGAACGTCTGGTTGTTCCACTGATTCACCATATCCAGAA

Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/evolution_20260523_130651/assembly/anc_assembly/intermediate_contigs/k117.bubble_seq.fa.info

@@ -0,0 +1 @@
+6 168

Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/evolution_20260523_130651/assembly/anc_assembly/intermediate_contigs/k117.contigs.fa.info

@@ -0,0 +1 @@
+267 7476

Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/evolution_20260523_130651/assembly/anc_assembly/intermediate_contigs/k117.final.contigs.fa.info

@@ -0,0 +1 @@
+0 0

Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/evolution_20260523_130651/assembly/anc_assembly/intermediate_contigs/k117.local.fa.info

@@ -0,0 +1 @@
+231 142103

Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/evolution_20260523_130651/assembly/anc_assembly/intermediate_contigs/k129.addi.fa.info

@@ -0,0 +1 @@
+0 0

Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/evolution_20260523_130651/assembly/anc_assembly/intermediate_contigs/k129.bubble_seq.fa.info

@@ -0,0 +1 @@
+0 0

Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/evolution_20260523_130651/assembly/anc_assembly/intermediate_contigs/k129.contigs.fa.info

@@ -0,0 +1 @@
+234 6552

Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/evolution_20260523_130651/assembly/anc_assembly/intermediate_contigs/k129.final.contigs.fa.info

@@ -0,0 +1 @@
+0 0

Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/evolution_20260523_130651/assembly/anc_assembly/intermediate_contigs/k129.local.fa.info

@@ -0,0 +1 @@
+191 118279

Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/evolution_20260523_130651/assembly/anc_assembly/intermediate_contigs/k141.addi.fa.info

@@ -0,0 +1 @@
+0 0

Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/evolution_20260523_130651/assembly/anc_assembly/intermediate_contigs/k141.bubble_seq.fa.info

@@ -0,0 +1 @@
+0 0

Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/evolution_20260523_130651/assembly/anc_assembly/intermediate_contigs/k141.contigs.fa.info

@@ -0,0 +1 @@
+226 6328

Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/evolution_20260523_130651/assembly/anc_assembly/intermediate_contigs/k141.final.contigs.fa.info

@@ -0,0 +1 @@
+0 0

Biomni/experiments/bioagent_bench/runs/scale_2000_rerun_sharded10_20260523_130637/evolution_20260523_130651/assembly/anc_assembly/intermediate_contigs/k21.addi.fa.info

@@ -0,0 +1 @@
+318 8904