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Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000007.fa

@@ -0,0 +1,103 @@
+>AS2_ACLBLIBL_01214
+----MACRLVGLSRSAYRRPLKGDTVADPDRALRQWLRAWAKDHPRYGYRRAYHDARAEG
+WVVNHKKIQRLWRDEGLRVPQRRRRKRVGSSTVDAPTADAPNVVWAVDFQFDADEHGRPI
+KICSIVDEHTRECIGGLVERSITADRLTAHLEDLVAARGAPAVLRSDNGPEFISEAMADW
+AGTRTGLSYIPPGSPWRNGYVESFNSRIRDECLNINSFYSLLHAQVIIGDWKDEYNHHRR
+HSSLGYLTPAEYARQCTHQMETDDSQNVRTE
+>KBS0714_MOLHKGIG_00157
+----MACRLVGLSRSAYRRPLKGDTVADPDRALREWLRAWAKDHPRYGYRRAYHDARAEG
+WVVNHKKIQRLWRDEGLRVPQRRRRKRVGSSTVDAPTADAPNVVWAVDFQFDADEHGRPI
+KICSIVDEHTRECIGGLVERSITADRLTAHLEDLVAARGAPAVLRSDNGPEFISEAMADW
+AGTRTGLSYIPPGSPWRNGYVESFNSRIRDECLNINSFYSLLHAQVIIGDWKDEYNHHRR
+HSSLGYLTPAEYARQCTHQMETDDSQNVRTE
+>KBS0714_MOLHKGIG_01034
+----MACRLVGLSRSAYRRPLKGDTVADPDRALREWLRAWAKDHPRYGYRRAYHDARAEG
+WVVNHKKIQRLWRDEGLRVPQRRRRKRVGSSTVDAPTADAPNVVWAVDFQFDADEHGRPI
+KICSIVDEHTRECIGGLVERSITADRLTAHLEDLVAARGAPAVLRSDNGPEFISEAMADW
+AGTRTGLSYIPPGSPWRNGYVESFNSRIRDECLNINSFYSLLHAQVIIGDWKDEYNHHRR
+HSSLGYLTPAEYARQCTHQMETDDSQNVRTE
+>KBS0714_MOLHKGIG_01292
+----MACRLVGLSRSAYRRPLKGDTVADPDRALREWLRAWAKDHPRYGYRRAYHDARAEG
+WVVNHKKIQRLWRDEGLRVPQRRRRKRVGSSTVDAPTADAPNVVWAVDFQFDADEHGRPI
+KICSIVDEHTRECIGGLVERSITADRLTAHLEDLVAARGAPAVLRSDNGPEFISEAMADW
+AGTRTGLSYIPPGSPWRNGYVESFNSRIRDECLNINSFYSLLHAQVIIGDWKDEYNHHRR
+HSSLGYLTPAEYARQCTHQMETDDSQNVRTE
+>KBS0714_MOLHKGIG_01384
+----MACRLVGLSRSAYRRPLKGDTVADPDRALREWLRAWAKDHPRYGYRRAYHDARAEG
+WVVNHKKIQRLWRDEGLRVPQRRRRKRVGSSTVDAPTADAPNVVWAVDFQFDADEHGRPI
+KICSIVDEHTRECIGGLVERSITADRLTAHLEDLVAARGAPAVLRSDNGPEFISEAVADW
+AGTRTGLSYIPPGSPWRNGYVESFNSRIRDECLNINSFYSLLHAQVIIGDWKDEYNHHRR
+HSSLGYLTPAEYARQCTHQMETGDSQNVRTE
+>KBS0714_MOLHKGIG_02077
+----MACRLVGLSRSAYRRPLKGDTVADPDRALREWLRAWAKDHPRYGYRRAYHDARAEG
+WVVNHKKIQRLWRDEGLRVPQRRRRKRVGSSTVDAPTADAPNVVWAVDFQFDADEHGRPI
+KICSIVDEHTRECIGGLVERSITADRLTAHLEDLVAARGAPAVLRSDNGPEFISEAMADW
+AGTRTGLSYIPPGSPWRNGYVESFNSRIRDECLNINSFYSLLHAQVIIGDWKDEYNHHRR
+HSSLGYLTPAEYARQCTHQMETDDSQNVRTE
+>SA211_MHAAABBN_01011
+------------------------------------------------------------
+-MVNHKKIQRLWRDEGLRVPQRRRRKRVGSSTVDAPTADAPNVVWAVDFQFDADEHGRPI
+KICSIVDEHTRECIGGLVERSITADRLTAHLEDLVAARGAPAVLRSDNGPEFISEAMADW
+AGTRTGLSYIPPGSPWRNGYVESFNSRIRDECLNINSFYSLLHAQVIIGDWKDEYNHHRR
+HSSLGYLTPAEYARQCTHQMETDDSQNVRTE
+>SA211_MHAAABBN_01104
+----MACRLVGLSRSAYRRPLKGDTVADPDRALREWLRAWAKDHPRYGYRRAYHDARAEG
+WVVNHKKIQRLWRDEGLRVPQRRRRKRVGSSTVDAPTADAPNVVWAVDFQFDADEHGRPI
+KICSIVDEHTRECIGGLVERSITADRLTAHLEDLVAARGAPAVLRSDNGPEFISEAMADW
+AGTRTGLSYIPPGSPWRNGYVESFNSRIRDECLNINSFYSLLHAQVIIGDWKDEYNHHRR
+HSSLGYLTPAEYARQCTHQMETDDSQNVRTE
+>SA211_MHAAABBN_01112
+----MACRLVGLSRSAYRRPLKGDTVADPDRALREWLRAWAKDHPRYGYRRAYHDARAEG
+WVVNHKKIQRLWRDEGLRVPQRRRRKRVGSSTVDAPTADAPNVVWAVDFQFDADEHGRPI
+KICSIVDEHTRECIGGLVERSITADRLTAHLEDLVAARGAPAVLRSDNGPEFISEAVADW
+AGTRTGLSYIPPGSPWRNGYVESFNSRIRDECLNINSFYSLLHAQVIIGDWKDEYNHHRR
+HSSLGYLTPAEYARQCTHQMETDDSQNVRTE
+>SA211_MHAAABBN_01114
+MSERIACRLVGLSRSAYRRPLKGDTVADPDRALREWLRAWAKDHPRYGYRRAYHDARAEG
+WVVNHKKIQRLWRDEGLRVPQRRRRKRVGSSTVDAPTADAPNVVWAVDFQFDADEHGRPI
+KICSIVDEHTRECIGGLVERSITADRLTAHLEDLVAARGAPAVLRSDNGPEFISEAMADW
+AGTRTGLSYIPPGSPWRNGYVESFNSRIRDECLNINRFYSLLHAQVIIGDWKDEYNHHRR
+HSSLGYLTPAEYARQCTHQMETDDSQNVRTE
+>SA211_MHAAABBN_02023
+----MACRLVGLSRSAYRRPLKGDTVADPDRALREWLRAWAKDHPRYGYRRAYHDARAEG
+WVVNHKKIQRLWRDEGLRVPQRRRRKRVGSSTVDAPTADAPNVVWAVDFQFDADEHGRPI
+KICSIVDEHTRECIGGLVERSITADRLTAHLEDLVAARGAPAVLRSDNGPEFISEAVADW
+AGTRTGLSYIPPGSPWRNGYVESFNSRIRDECLNINSFYSLLHAQVIIGDWKDEYNHHRR
+HSSLGYLTPAEYARQCTHQMEIGDSQNVRTE
+>TT9_LFPAFLNI_00588
+----MACRLVGLSRSAYRRPLKGDTVADPDRALREWLRAWAKDHPRYGYRRAYHDARAEG
+WVVNHKKIQRLWRDEGLRVPQRRRRKRVGSSTVDAPTADAPNVVWAVDFQFDADEHGRPI
+KICSIVDEHTRECIGGLVERSITADRLTAHLEDLVASRGAPAVLRSDNGPEFISEAMADW
+AGTRTGLSYIPPGSPWRNGYVESFNSRIRDECLNINSFYSLLHAQVIIGDWKDEYNHHRR
+HSSLGYLTPAEYARQCTHQMETDDSQNVRTE
+>TT9_LFPAFLNI_00590
+----MACRLVGLSRSAYRRPLKGDTVADPDRALREWLRAWAKDHPRYGYRRAYHDARAEG
+WVVNHKKIQRLWRDEGLRVPQRRRRKRVGSSTVDAPTADAPNVVWAVDFQFDADEHGRPI
+KICSIVDEHTRECIGGLVERSITADRLTAHLEDLVAARGAPAVLRSDNGPEFISEAVVDW
+AGTRTGLWADPVS-----------------------------------------------
+-------------------------------
+>TT9_LFPAFLNI_01250
+----MACRLVGLSRSAYRRPLKGDTVADPDRALREWLRAWAKDHPRYGYRRAYHDARAEG
+WVVNHKKIQRLWRDEGLRVPQRRRRKRVGSSTVDAPTADAPNVVWAVDFQFDADEHGRPI
+KICSIVDEHTRECIGGLVERSITADRLTAHLEDLVAARGAPAVLRSDNGPEFISEAMADW
+AGTRTGLSYIPPGSPWRNGYVESFNSRIRDECLNINSFYSLLHAQVIIGDWKDEYNHHRR
+HSSLGYLTPAEYARQCTHQMETDDSQNVRTE
+>TT9_LFPAFLNI_01339
+----MACRLVGLSRSAYRRPLKGDTVADPDRALREWLRAWAKDHPRYGYRRAYHDARAEG
+WVVNHKKIQRLWRDEGLRVPQRRRRKRVGSSTVDAPTADAPNVVWAVDFQFDADEHGRPI
+KICSIVDEHTRECIGGLVERSITADRLTAHLEDLVAARGAPAVLRSDNGPEFISEAMADW
+AGTRTGLSYIPPGSPWRNGYVESFNSRIRDECLNINSFYSLLHAQVIIGDWKDEYNHHRR
+HSSLGYLTPAEYARQCTH-------------
+>TT9_LFPAFLNI_01885
+----MACRLVGLSRSAYRRPLKGDTVADPDRALREWLRAWAKDHPRYGYRRAYHDARAEG
+WVVNHKKIQRLWRDEGLRVPQRRRRKRVGSSTVDAPTADAPNVVWAVDFQFDADEHGRPI
+KICSIVDEHTRECIGGLVERSITADRLTAHLEDLVAARGAPAVLRSDNGPEFISEAMADW
+AGTRTGLSYIPPGSPWRNGYVESFNSRIRDECLNINSFYSLLHAQVIIGDWKDEYNHHRR
+HSSLGYLGHV---------------------
+>TT9_LFPAFLNI_02205
+----MACRLVGLSRSAYRRPLKGDTVADPDRALREWLRAWAKDHPRYGYRRAYHDARAEG
+WVVNHKKIQRLWRDEGLRVPQRRRRKRVGSSTVDAPTADAPNVVWAVDFQFDADEHGRPI
+KICSIVDEHTRECIGGLVERSITADRLTAHLEDLVASRGAPAVLRSDNGPEFISEAMADW
+AGTRTGLSYIPPGSPWRNGYVESFNSRIRDECLNINSFYSLLHAQVIIGDWKDEYNHHRR
+HSSLGYLTPAEYARQCTHQMETDDSQNVRTE
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000017.fa

@@ -0,0 +1,73 @@
+>AS2_ACLBLIBL_01236
+M-----------------------------------------------------------
+------------------------------------------------------------
+----------------RVHRRTVPVEHRSVVHGLTVTSPERTWADLCAVRPRWDEADLVA
+AGDHLVRHPWAGGGRLPPRTTVERLAEVLEALAPFHGVGRARAALGRVRVGADSAMETHA
+RLALIDAGLGEPLLQHKVAPDDPALAESDLYFADLRVALEYDGEHHLGRQQQARDARRDR
+RLLSYGVTPMRITAADHAEGYRSVIAQLQQRRRAHDSPSEETA-----------RGE---
+---S
+>KBS0714_MOLHKGIG_01559
+MPRVVTPLPPDQPAVLLAT--D-LARLGLPPDRARRSDLERVGQGFHRQRARPGTGWADL
+GLPEPGHGFSPDHLAALLRRRPDAVLSHETAAHLHALPMPTRAWRRRDPATGELEADPPV
+HLTVARGTRRVRRAGLMDHRRPLAPEFVTLVHGLRVTTVDRTWLDLCSLTPPWTFEDLVA
+AGDHAVRHPWTPAGRTDPATTIAALRSALHASGRFHGRPAAREALDSVRVGADSPPETRL
+RLALVAGGLPEPELQAALEPGDPVSPVADLAYRHVRLALQYDGAGHRTREQQARDARRDR
+YGQARGWTTLRVTWADGREDFRGVVAVVRRRLGPSAST----------------------
+----
+>KBS0714_MOLHKGIG_01658
+M-----PFAPDLPLVPVFTTRDVLER-GLPPSRVRRSDVLRLARGIHRRRDMPLRTWESA
+GLPPPHHGVGLDLLTALLRSRPDAVLSHETAAHLHGLPLPPGGATRR----------AAV
+EITLHRGTARARIPGVMEHRRPLPAGHVTSVLGLRVTTPERTWLDLCSIGHPWDEASLVS
+AGDHLVRHPWSPRGRRPPITTVTALHEAMRPLGRFVGRPRATAALERVRVGADSPQETRL
+RLALVEAGLGEPALQHVFDPGRRDAPEADLWFEDCRLVLQYDGEVHRSAEQHARDARRDQ
+YYAERGQMTLHVTGRDVGEGYARVIEAVLRRRAQVSNGWD--------------------
+---A
+>KBS0714_MOLHKGIG_01845
+MPRRPAPLPPALAGR-VFTRREALDRLSLSSDRLRSLDLRQVTHGAHRAVVDVPGSWAAL
+GYPRPVAALPPEE-AAVVVALTRGVASHLTAARLHGLVLPWWA-----------EEDMRV
+HVSRPHRTGRTGRAGVACHGRTVPAEDRVEVHGVPVTSLERTWVDLCSLLRPDQVADAVV
+AGDALVNRPWVDGSRLPPRTTASRLSAALERAGRFKGVRVARAALALIRVGADSPPETRL
+RLALLDAGLPEPRLQAQLVSPAGERTDADMVVERSRVALHYDGGHHRTPEQQRRDARRDR
+LWQEAGHLSITVMGADLAEDFRTVVAAVVRHDRAARATSTISAPAPAAGLSNVKSGEWAL
+SNVG
+>KD337_NAFOICDF_01147
+M-----------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+--------------------------------------------LERVRVGADSAVVSLA
+RLALVDAGLGEPLLQHRLDPWDPDCPETHMFSPELAVALEYDGGGHLTPAQQARDARRDR
+RLPARGVTPLRNTAEDHAEGYRRLIAQLQDRRRGR-------------------------
+----
+>SA211_MHAAABBN_01269
+MPRVVTPLPPDQPAVLLAT--D-LARLGLPPDRARRSDLERVGQGFHRQRAHPGTGWADL
+GLPEPGHGFSPDHLAALLRRRPDAVLSHETAAHLHGLPMPARAWRRRDPATGELDVDPPV
+HLTVARGTRRVRRAGLMDHRRPLAPEFVTHVHGLRVTTVDRTWLDLCSLTPPWTFEDLVA
+AGDHAVRHPWTPAGRTDPATTIAALRSALHASGRFHGRPAAREALDSVRVGADSPPETRL
+RLALVAGGLPEPGLQAALEPEDPFSPVADVAYRHVRLALQYDGAGHRTREQQARDARRDR
+YGQARGWTTLRVTWADGREDFRGVVAVVRRRLGHSAST----------------------
+----
+>SA211_MHAAABBN_01363
+M-----SFAPDLPLVPVFTTRDVLER-GLPPSRVRRSDVLRLARGIHRRRDMPLRTWESA
+GLPPPHHGVGLDLLTALLRSRPDAVLSHETAAHLHGLPLPPGGATRR----------AAV
+EITLHRGTARARIPGVMEHRRPLPAGHVTSVLGLRVTTPERTWLDLCSIGHPWDEASLVS
+AGDHLVRHPWSPRGRRPPITTVTALHEAMRPLGRFVGRPRATAALERVRVGADSPQETRL
+RLALVEAGLGEPTLQHVFDPGRRDAPEADLWFEDCRLVLQYDGEVHRSAEQHARDARRDQ
+YYAERGQMTLHVTSRDVGEGYARVIEAVLRRRAQVSNGWD--------------------
+---A
+>TT9_LFPAFLNI_01486
+MPRVVTPLPPDQPAVLLAT--D-LARLGLPPDRARRSDLERVGQGFHRQRAHPGTGWADL
+GLPEPGHGFSPDHLAALLRRRPDAVLSHETAAHLHGLPMPARAWRRRDPATGELDVDPPV
+HLTVARGTRRVRRAGLMDHRRPLAPEFVTHVHGLRITTVDRTWLDLCSLTPPWTFEDLVA
+AGDHAVRHPWTPAGRTDPATTIAALRWALHASGRFHGRPAAREALDSVRVGADSPPETRL
+RLALVAGGLPEPELQAALEPGDPFSPVADLAYRHVRLALQYDGAGHRTREQQARDARRDR
+YGQARGWTTLRVTWADGREDFRGVVAVVRRRLSPSAST----------------------
+----
+>TT9_LFPAFLNI_01588
+M-----SFAPDLPLVPVFTTRDVLER-GLPPSRVRRSDVLRLARGIHRRRDMPLRTWESA
+ELPPPHHGVGLDLLTALLRSRPDAVLSHETAAHLHGLPLPPGGATRR----------AAV
+EITLHRGTARARIPGVMEHRRPLPAGHVTSVLGLRVTTPERTWLDLCSIGHPWDEASLVS
+AGDHLVRHPWSPRGRRPPITTVTALHEAMRPLGRFVGRPRATAALERVRVGADSPQETRL
+RLALVEAGLGEPTLQHVFDPGRRDAPEADLWFEDCRLVLQYDGEVHRSAEQHARDARRDQ
+YYAERGQMTLHVTSRDVGEGYARVIEAVLRRRAQVSNGWD--------------------
+---A
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000026.fa

@@ -0,0 +1,43 @@
+>AS2_ACLBLIBL_00124
+MSEQTTPDGAES--PIIVERQGRVGHIRLNRPKALNALNEATMRAVVAAVQELDTDPEIG
+AILLSGSP-KAFAAGADIKEM------ATKEFSEMYAADWFAGWDGLTRARTPIVACVTG
+YALGGGCELAMMADVLVAGEGAKFGQPEINLGVIPGMGGSQRLTRAVGKAKAMDMILTGR
+MIGAEEAERIGLVSRVVADEKALEEAQEVAAAIASKSKPAAWMAKETVNAAFETTLAQGI
+AFERRVFHSAFATTDQKEGMDAFANKREAGWQHR------
+>KBS0714_MOLHKGIG_00245
+MSEQTTPDGAES--PIIVERQGRVGHIRLNRPKALNALNEATMRAVVAAVQELDTDPEIG
+AILLSGSP-KAFAAGADIKEM------ATKEFSEMYAADWFAGWDGLTRARTPIVACVTG
+YALGGGCELAMMADVLVAGEGAKFGQPEINLGVIPGMGGSQRLTRAVGKAKAMDMILTGR
+MIGAEEAERIGLVSRVVADEKALEEALEVAATIASKSKPASWMAKEAVNAAFETTLAQGI
+AFERRVFHAAFATADQKEGMDAFTAKREAGWQHR------
+>KD337_NAFOICDF_00093
+MNEQNRTEAAEAEQPVIVGRDGRVGRIQLNRPKALNALNAATMEAVVAAAVEMDADPEVG
+AILLLGSA-KAFAAGADIKEM------KDKDAADMYAADWFRRWEDLARLRTPIVACVQG
+YALGGGCELAMMADVLVAGRSAKFGQPEITLGVLPGMGGSQRLTKSVGKAKAMDMVLTGR
+MVEAEEAERMGLVSRLVEDEDAVATAEEVAATIAGFSKPVAQMNKEVVLNAFETPLTQGL
+VFERRVFHGVFSSEDQAEGMAAFAEKRSPVWKHR------
+>SA211_MHAAABBN_00096
+MST-----------GLHIETVDRIGIIRLDRPAELNALTFATVEEIAAQVQRWEVDGETD
+GVVITGSGQKAFAAGADIREL------QHKSVQEMTARGMQHAMTALRESSLISVAAVNG
+LALGGGFELALSCDIRLATPQASFGLPELGLGIIPGAGGTQLLTRYTNASVASYHILTGQ
+PISADRAHQLGLVSELHEAEDLMAAAMEVIGTIASKGPLARQLAKRAIHGAAHAGMDSGL
+EIELLAQAAIFGTQEREEGLNAFLERRTPSFIPRPRPRKD
+>SA211_MHAAABBN_00100
+MTD-----------RIRTSVEQGVCTITLNRPGALNALENTMIATIVAELERAGADPDVR
+AILLRGEG-KAFCAGDDLVDMGTEEHPESPDLVERYSRGYPAIVERMLTLEKPIVASVRR
+YALGAGLEMALAADLIVAEPQAKLGLPFVLRGI---AAGTSLLPKRAPVQLVQRMLYLGE
+MITAEDAHRMGVVGHLAEDEDVDELALATARRLAVGATRAIGLMKTALRTSETLSARDAL
+AVQVGATAASVLTEDFTEGKVAFTQKRDPEFGGR------
+>SA211_MHAAABBN_02257
+MSEQTTPDGAES--PIIVERQGRVGHIRLNRPKALNALNEATMRAVVAAVQELDTDPEIG
+AILLSGSP-KAFAAGADIKEM------ATKEFSEMYAADWFAGWDGLTRARTPIVACVTG
+YALGGGCELAMMADVLVAGEGAKFGQPEINLGVIPGMGGSQRLTRAVGKAKAMDMILTGR
+MIGAEEAERIGLVSRVVADEKALEEALEVAATIASKSKPASWMAKEAVNAAFETTLAQGI
+AFERRVFHSAFATADQKEGMDAFTAKREAGWQHR------
+>TT9_LFPAFLNI_00245
+MSEQTTPDGAES--PIIVERQGRVGHIRLNRPKALNALNEATMRAVVAAVQELDTDLEIG
+AILLSGSP-KAFAAGADIKEM------ATKEFSEMYAADWFAGWDGLTRARTPIVACVTG
+YALGGGCELAMMADVLVAGEGAKFGQPEINLGVIPGMGGSQRLTRAVGKAKAMDMILTGR
+MIGAEEAERIGLVSRVVADEKALEEAKEVAAAIASKSKPAAWMAKETVNAAFETTLAQGI
+AFERRVFHSAFATADQKEGMDAFTAKREAGWRHR------
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000046.fa

@@ -0,0 +1,63 @@
+>AS2_ACLBLIBL_00837
+MLFHHHGYVSTDPRVQPAAGIGLDRPAELPDEMDVLIVGSGPAGMIAAAQLAMFPDVHTRIIERRSHRLEIGQADGIQAR
+SVETFQAFGFASQIIDEAYDLTSMAFWNPSSEDADTIVRTSLAEDDPEGVSEFPHLIVNQARILDWFAAYMKNSPTRAEP
+DYGWSFESLEDSA-EGEYPVLVTLRRTVDAQGEPLADPESGETRQVRAKYVVGADGAGSRVRKAIGHSLAGGASNHAWGV
+MDALAVSDFPDIRTKCAIHS-STGSILHIPREGGHLFRMYVDLGEVPADDNHKVRQTPIEEIIRRAQQIIRPYTLEVKDV
+AWHSVYEVGHRLTSGFDNRERVDHPNVFLLGDACHTHSAKAGQGMNVSMQDGWNLGWKLGQVLSGVAPAELVPTYSEERK
+EIAKNLIDFDKEWSTLMAKPTSELGDPNEVADFYTKTAEFPAGFMTEYKPSILTTDATGQSLAAGFPIGKRFKSALVERS
+CDTNVKHLGHLHRADGRWRVYVFADAASPRSADSKVAAWAKAVEEDPRSFRNRHTPADGPQDARFDVKVVYQQKQTEFAH
+PDVPAVFRPTSGDLRLLDLNNIFATCQPKHGEDIFEARGISRDGAVVVVRPDHYVSGVFGLDEVERLNEFFAGVLLDAS-
+>KBS0714_MOLHKGIG_02005
+MLFHHHGYVSTNPRVQVAAGIGLDRPAELPDEMDVLIVGSGPAGMIAAAQLAMFPDVHTRIIERRPHRLEIGQADGIQAR
+SVETFQAFGFASEIIDEAFDLTSMAFWNPAEDDADTIVRTSLAEDDPEGVSEFPHLIVNQARILDWFAEYMKNSPTRARP
+DYGWAFETLEDTN-DGEHPVLVTLRRTVDAEENALEDPASGPTRQVRAKYVVGADGAGSRVRKAIGHTLTGDAANHAWGV
+MDALADTDFPDIRTKCAIHS-SSGSILLIPREGGHLSRMYVDLGEVPADDDHKVRQTPLEEIIRRAQQILRPYTLDVKEV
+AWHSVYEVGHRLTSGFDNRERVAHPNVFLLGDACHTHSAKAGQGMNVSMQDGWNLGWKLGQVLSGLAPVELVPTYAEERK
+EIAKNLIDFDKEWSTLMATPTSELGDPNEVAEFYTKTAEFPAGFMTEYQPSLLTTDATGQALAQGYPIGKRFKSALVERS
+CDTNVKHLGHLHRADGRWRVYVFADAASPRAEDSKVAAWAKAIEEDPRSFRNRHTPSDGPEDARFDIKVVYQQKQTEFAH
+PDVPSIFRPTTGSLGLHDLNNIFATCRPQHGEDIFEARGISRDGAVVVVRPDQYVSGVFGLDEVDRLNAFFAGVLLDAN-
+>KD337_NAFOICDF_00774
+MLFHHHGYVSTDPRMKPAAGIGLDRPAELPDEMDVLIVGTGPAGMIAAAQLAMFPDVHTRIIERRGKRLEIGQADGIQAR
+SVETFQAFGFASQIIDEAYDLTSMAFWNPSPEDEDAIVRTSLAEDDPHGVSEFPHLIVNQARILDWFAEFMKNSPTRATP
+DYGWEFVSLDDSDQDAERPVQVTLRRTVDAKGNPLAEGVAGEERVVRAKYVIGADGAGSRVRKAIGHSLSGDAANHAWGV
+MDVLADSNFPDIRTKCAIHS-SSGSILHIPREGGHLFRMYVDLGEVPADDNHKVRQTPIEEVIRRAQQIIRPYTLDVKDV
+AWSSVYEVGHRLTSGFDNRERCTHPNVFLLGDACHTHSAKAGQGMNVSMQDGWNLAWKLGQVLSGIAPAELVPTYSEERK
+EIAKNLIDFDKEWSTLMAKPTSELGDPNEVAEFYTKTAEFPAGFMTEYRPSMLTTDAAGQELATGFPIGKRFKSAKVERS
+CDTNVKHLGHLHTADGRWRVYVFADAAAPHDADSKVAAWAEAVEEDPQSFRNRHTPAGAPQDERFDLKVVYQQKQTEFAF
+PDVPAVFRPTTGPLGLHDLNNIFAVCRPEHAEDIFELRGVSRDGAVVVVRPDQYVSGVFGLDEVDRLNAFFAGVLLDAN-
+>SA211_MHAAABBN_01715
+MLFHHHGYVSTNPRVQVAAGIGLDRPAELPDEMDVLIVGSGPAGMIAAAQLAMFPDVHTRIIERRPHRLEIGQADGIQAR
+SVETFQAFGFASEIIDEAFDLTSMAFWNPAEDDADTIVRTSLAEDDPEGVSEFPHLIVNQARILDWFAEYMKNSPTRARP
+DYGWAFETLEDTN-DGEHPVLVTLRRTVDAQGNALEDPASGPTRQVRAKYVVGADGAGSRVRKAIGHTLTGDAANHAWGV
+MDALADTDFPDIRTKCAIHS-SSGSILLIPREGGHLFRMYVDLGEVPADDNHKVRQTPLEEIIRRAQQILRPYTLDVKEV
+AWHSVYEVGHRLTSGFDNRERVAHPNVFLLGDACHTHSAKAGQGMNVSMQDGWNLGWKLGQVLSGMAPVELVPTYSEERK
+EIAKNLIDFDKEWSTLMAKPTSELGDPNEVAEFYTKTAEFPAGFMTEYQPSLLTTDATGQALAQGYPIGKRFKSGLVERS
+CDTNVKHLGHLHRADGRWRVYVFADTASPRAEDSKVAAWAKAIVEDPRSFRNRHTPSDGPEDARFDIKVVYQQKQTEFAH
+PDVPSIFRPTTGPLGLHDLNNIFATCQPKHGEDIFEARGISRDGAVVVVRPDQYVSGVFGLDEVDRLNAFFAGVLLDAN-
+>TT9_LFPAFLNI_00173
+M-------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---------------------------FIAGDACHTHSAKAGQGMNVSMQDGWNLAWKLGQVLEGRSDASLLATYSEERQ
+QIAENLIEFDKAWEGMMSKRPDELEDPQAVGRFYKDNAEFPNGFATQYPASSVTGEDTHQALAAGVPIGKRFESAAVRRV
+ADTSPRQLGHLFEADGRWRLYAFAD-----EDRTAVGELADWLADSPDSPVRRFTPESADLNSVFDAKVVYQQPYQEVEL
+ADVPALFLPKMGPYQLTDKEVVFAA---DLADDIFEARGIDRGGALIIQRPDMYVAHVLPLSAREEITAFFEQNMVSASV
+>TT9_LFPAFLNI_00174
+MR---------------------------------------------------------------------GAAD-----
+----------------------------P---------RRSLSTLPTTAVSEFPFLIVNQARVIDYFAEYAERGP-----
+---------------------------------------QGQERTVRAKYVVGCDGSRSRVRDCTGIEVVRDPSAHAWSV
+MDVLLETDFPDNRQKCGIQSDKDGTILLIPREGGFLARFYVSLGSI--DDAPRPRS------------------------
+--------------------------------------------------------------------------------
+---------------------------------------------------------------GG---GIRACSSPATPA
+TPTPPR-------------------------------------------------PARA---------------------
+--------------------------------------------------------------------------------
+>TT9_LFPAFLNI_01943
+MLFHHHGYVSTNPRVQVAAGIGLDRPAELPDEMDVLIVGSGPAGMIAAAQLAMFPDVHTRIIERRPHRLEIGQADGIQAR
+SVETFQAFGFASEIIDEAFDLTSMAFWNPAEDDADTIVRTSLAEDDPEGVSEFPHLIVNQARILDWFAEYMKNSPTRARP
+DYGWAFETLEDTN-DGEHPVLVTLRRTVDAQGNALEDPASGPTRQVRAKYVVGADGAGSRVRKAIGHTLTGDAANHAWGV
+MDALADTDFPDIRTKCAIHS-SSGSILLIPREGGHLFRMYVDLGEVPADDNHQVRQTPLEEIIRRAQQILRPYTLDVKEV
+AWHSVYEVGHRLTSGFDNRERVAHPNVFLLGDACHTHSAKAGQGMNVSMQDGWNLGWKLGQVLSGMAPVELVPTYSEERK
+EIAKNLIDFDKEWSTLMAKPTSELGDPNEVAEFYTKTAEFPAGFMTEYRPSLLTTDATGQALAQGYPIGKRFKSALVERS
+CDTNVKHLGHLHRADGRWRVYVFADAASPRAEDSKVAAWAKAIEEDPRSFRNRHTPSDGPEDARFDIKVVYQQKQTEFAH
+PDVPSVFRPTTGSLGLHDLNNIFATCRPTHGEDIFEARGISRDGAVVVVRPDQYVSGVFGLDEVDRLNAFFAGVLLDAN-

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000053.fa

@@ -0,0 +1,43 @@
+>AS2_ACLBLIBL_02181
+M--------------------------------RAPGVRGA--------VALGGAAGVVA
+--GSTAMELVGVGGLLALAGRDG-----GVGLGPVAALAFAALPLAVVNVLGSFLLGLLL
+ARSRHAGLD--RRPALVAGLGTGFLGSFTTIATAAAVFLLTPLEAGWSAIAASSGVGG--
+---FLSATAGLLLPPLALLALLAALSTAAAVLGLRLGGA-PARGADAEARVDGVASDGTA
+ADGAPA
+>KBS0714_MOLHKGIG_00749
+MAARGET---------------TADRRGGRGTDRRPGTAGA--------VALGGAAGVLC
+--GAGVMNAVT-----ALAGAPNFRGTFGAAFGAVDVLV-QALPLFVVNVLGSFLLGLLW
+AASRRRGPD--WRPRLVAGLGTGFLGAFTTISSAVAL-VLWPVRLG----AAVSGAGG--
+---VLAAAVAVLL----VLALMAALSTAAAMLGLRAGGA-PGSRV--------VGTDRSE
+ED---A
+>KD337_NAFOICDF_00685
+MNA---------------------------------ALIVV--------VALGGGAG---
+--AAGRFLLDG-----LINTGREFRLPVGT---------------LTINITGSLLLGIIV
+GAATHLGA------VPVAVLGTGVMGGYTTFSTASFE-TVRLARSGRITAAAINGLG---
+---------------------MLVVSVAAATAGILLGGT---------------------
+-----L
+>KD337_NAFOICDF_00686
+MTTRTDTPMPDDQLPPDPDVDVSDPATTMRPVHLRWRYVGL--------VAVGGAGG---
+--TALRDVISS-----VLPADGGVS-----------------WSIFWINITGALALGVLL
+EALAHRGPDAGRRRVLRLLLGTGVLGGFTTYSTLAES-TAALFLDG----HGLAGTG---
+----------YAL----LTVLSGAIATAC---GLVVAG---------------WFRPRTE
+E----A
+>KD337_NAFOICDF_02076
+M------------------------------ADARPAAGGAAARRTLPWVALGGAAGALA
+SLGAGALIAQA-----MGPGDPSISGPLGTASATLA-------SVAAVNVLGSFLLGLLR
+GASGRPGAR--WDPRLVAALGTGFLGAFTTFGTVAAT-LALPVMMT----AGLAATGDTW
+WILLAVVVVGLLI----AVAVLAALSTAAAALGLHLGGRGAGSGS--------AGRPDGA
+A----A
+>SA211_MHAAABBN_00479
+MAARGEP---------------TADRRGGRGTDRRPGTAGA--------VALGGAAGVLC
+--GAGVMNAVT-----ALAGAPNFRGTFGAAFGAVDVLV-QALPLFVVNVLGSFLLGLLW
+AASRRRGPD--WRPRLVAGLGTGFLGAFTTISSAVAL-VLWPVRLG----AAVSGAGG--
+---VLTAAASVLL----VLALMAALSTAAAVLGLRAGGA-PGSRV--------VGADRSA
+ED---A
+>TT9_LFPAFLNI_00713
+MAARGET---------------TADRRGGRGTDRRPGTAGA--------VALGGAAGVLC
+--GAGVMNAVT-----ALAGAPNFRGTFGAAFGAVDVLV-QALPLFVVNVLGSFLLGLLW
+AASRCRGPD--WRPRLVAGLGTGFLGAFTTISSAVAL-VLWPVRLG----AAASGAGG--
+---VLAAAVAVLL----VLALMAALSTAAAVLGLRAGGA-PGSRA--------VGTDRSA
+ED---A
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000055.fa

@@ -0,0 +1,36 @@
+>KBS0714_MOLHKGIG_02246
+MD------HKE--ILHQGLRRQRDALFAKLDGLPEREVRLPRTPTGTNLLGLLKHAATCE
+LEYFGEVFGRPAGIPLPWDAPGVGEEDGADLFAAEDETLEDVLDYARRCFAHADATIEAL
+--------VFDARGRVPWWPAHLAEVTLAQILSHVALDAARHAGHADILREGIDGQAGLR
+GPGDNLPGWDAERWAAHVRRLEGIARGAGPV--R
+>KBS0714_MOLHKGIG_02261
+MD------HKQ--ILHDGLRRQRAALLQKLEGLSERDARLPRTPTGTNLLGLVKHAAVVE
+LEYFGETFDRPAEVQLPWAAAGQSEEDNVDMFAAEGESLEDVLEFARRCFAHADATITAL
+--------GADAHGRVAWWPDDKAEVTLAQIIAHVALDEARHAGHADILREQIDGQAGLR
+APGNNLPVWGADRWAAHVDRLTAIAEGSGGPGRN
+>KD337_NAFOICDF_00418
+MD------HKQ--ILHDGLRRQRAALLHKLEGLSERDARLPRTPTGTNLLGLVKHAAVIE
+LEYFGGTFGRPAEVQLPWAAAGQPEEDNVDMFAAEGESLEDVLEFARRCFVHADATITAL
+--------GADAPGRVAWWPDDKAEVTLAQIIAHVALDEARHAGHADILREQIDGQVGLR
+SPGNNLPPWDADRWAAHVDRLTAIAEGSGGVGWN
+>KD337_NAFOICDF_00422
+MGFLTPQAHGELAVLTTYALQQLAQMRTTVHGLTDEQAHSVPSASALNLTGLLLHTGEVA
+VYWTAAAASAPGEPVLPED---VNEDHSLDELVADGRPLAQVLERFDRCVEVARQNLAAV
+ADLSAPVPVPDA----PWFPADLKTWEARWALLHVTAEVARHVGHADLIRESIDGTGSY-
+-------------------ELNDLADAAAQ---G
+>SA211_MHAAABBN_01948
+MD------HKE--ILHQGLRRQRDALFAKLDGLPEREVRLPRTPTGTNLLGLLKHAATCE
+LECFGEVFGRPAGIPLPWDAPGVGEEDGADLFAAEDETLEDVLDYARRCFAHADATIEAL
+--------VLDARGRVPWWPAHLAEVTLAQILSHVALDAARHAGHADILREGIDGQAGLR
+GPGDNLPGWDAERWAAHVRRLEGIARGAGPV--R
+>TT9_LFPAFLNI_02178
+MD------HKE--ILHQGLRRQRDALFAKLDGLPEREVRLPRTPTGTNLLGLLKHAATCE
+LEYFDEVFGRPAGIPLPWDAPGVGEEDGADLFAAEDETLEDVLDYARRCFAHADATIEAL
+--------VFDARGRVPWWPAHLAEVTLAQILSHVALDAARHAGHADILREGIDGQAGLR
+GPGDNLPGWDAERWAAHVRRLEGIARGAGPV--R
+>TT9_LFPAFLNI_02192
+MD------HKQ--ILHDGLRRQRAALLQKLEGLSERNARLPRTPTGTNLLGLVKHAAVVE
+LEYFGETFGRPAEVQLPWAAAGQPEEDNVDMFAAEGESLEDVLEFARRCFAHADATIAAL
+--------DADAPGRVAWWPDDKAEVTLAQIIAHVALDEARHAGHADILREQIDGQAGLR
+APGNNLPPWDADRWAAHVDRLTAIAEGSGGPGRN
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000062.fa

@@ -0,0 +1,49 @@
+>AS2_ACLBLIBL_00074
+MTQTATPQTDAPAVPAIFEPIEINGVRVRNRLILPPMCQYSCEARDGVPHGWQFQHLGAR
+AAGGFGIVVTEATAVTPEGRISPWDTGLWNDEQRDAWAPIAEFIASEGALPAIQLGHAGA
+KASTVPMHPGAPAG-QPILEGPDSWETLSPSGVATNSMEIRT-HAMRVDEIRETVQAFAD
+AAERADRAGFGAVQLHAAHGYLIHQFLSPLTNTRTDEYGGDFEGRTRFLKEVVAAVREVW
+PADKVLGIRISGTDWVEGGWSIEETVRLAQELQGQVHWFDLSSAGIGDTYEGPQGPGYQV
+PLATAVKEGTEGIVV--SAVGSLTGAEEVAAVVDEDRADAVCVGRAALANPN----W---
+-------PT-----AAALALDVPSEQVPMARQYFRAKW
+>KBS0714_MOLHKGIG_00279
+MTQTATPQTDAPAVPAIFEPIEINGVRVRNRLILPPMCQYSCEARDGVPHGWHFQHLGAR
+AAGGFGIVVAEATAVTPEGRISAWDTGLWNDEQRDAWAPIAEFIASQGALPAIQLGHAGA
+KASTVPMHPGALAG-QPILEGPDSWETLSPSGVATNSMEIRT-HAMRVDEIRETVQAFAD
+AAERADRAGFGAVQLHAAHGYLIHQFLSPLTNTRTDEYGGDFEGRTRFLKEVVAAVREVW
+PADKVLGIRISGSDWVEGGWSIEETVRLAQELQGQVHWFDLSSAGIGDTYEGPQGPGYQV
+PLATAVKEGTEGIVV--SAVGSLTGAEEVAAVVDEDRADAVCVGRAALANPN----W---
+-------PT-----AAALALDVPSEQVPMARQYFRAKW
+>KD337_NAFOICDF_02346
+-------------MPDLFDPLPLGGLTLPNRVTMAPLTRQRA-GEDGVPGDLHVEYYRQR
+ASA--GLIVSEGVFPTVDSRAFPGQPGLEDEAQQAGWARVADAVHEAGGRIFVQVMHGGR
+MC-----HPDLLRGAEP--VAPSAIAPGVPVRGFSGKTDGPVPRALETEELPGIAAAFAS
+AARRAVDAGADGVEVHGANGYLLHEFTAASSNHRTDAYGGSPENRARLTVEVVRAVAAEI
+GAERT-ALRLSPEHDVQGVLEQDRADVLATYGAILDGVADLDLAYLSLLHRDVAG-----
+DLVAALRARFGGPVLLNSGFSEVTGAAEARRIVEGGLADAAVVGRALIANPDLVRRWRED
+RETNAPDPSTFYVGGAHGYTDYPSLEG-----------
+>SA211_MHAAABBN_00203
+-------------MPSLFDPLDVGALRLDNRIVMAPLTRQRA-GEDGVPTELPAEHYAQR
+ATA--GLLVTEGAFPSFRSRAFPGQTGLADDAQTDGWRAVAQAVHEAGGHVFVQVMHGGR
+MC-----HPDLLRGAEP--EAPSAIAPGVPVRGFSGKMEGPVPSALDTEELPRVVAEFAD
+AARRAVEAGLDGVEVHGANGYLLHEFLAPSSNTREDAYGGSPENRARLTVEVVRAVAQAI
+GAERT-ALRISPEHNVQGTIEEDRADVLATYDALLAGLADLDLAYLSVIHQDVAG-----
+DLAAHLRESFSGPLVLNSGFGAVTGLEEARRIVEDGLADAVAVGRELIANPDLARRWREG
+LPLNEPDPTTFYTGGAHGYTDYPFVDGSPSS-------
+>SA211_MHAAABBN_02294
+MTQTATPQTDAPAVPAIFEPIEINGVRVRNRLILPPMCQYSCEARDGVPHGWQFQHLGAR
+AAGGFGIVVAEATAVTPEGRISPWDTGLWNDEQRDAWAPIAEFIASEGALPAIQLGHAGA
+KASTVPMHPGAPAG-QPILEGPDSWETLSPSGVATNSMEIRT-HAMRVDEIRETVQAFAD
+AAERADRAGFGAVQLHAAHGYLIHQFLSPLTNTRTDEYGGDFEGRTRFLKEVVAAVREVW
+PADKVLGIRISGSDWVEGGWSIEETVRLAQELQGQVHWFDLSSAGIGDTYEGPQGPGYQV
+PLATAVKEGTEGIVV--SAVGSLTGAEEVAAVVDEDRADAVCVGRAALANPN----W---
+-------PT-----AAALALDVPSEQVPMARQYFRAKW
+>TT9_LFPAFLNI_00278
+MTQTATPQTDAPAVPAIFEPIEINGVRVRNRLILPPMCQYSCEARDGVPHGWQFQHLGAR
+AAGGFGIVVAEATAVTPEGRISPWDTGLWNDEQRDAWAPIAEYIASEGALPAIQLGHAGA
+KASTVPMHPGAPAG-QPILEGPDSWETLSPSGVATNSMEIRT-HAMRVDEIRETVQAFAD
+AAERADRAGFGAVQLHAAHGYLIHQFLSPLTNTRTDEYGGDFEGRTRFLKEVVAAVREVW
+PADKVLGIRISGSDWIEGGWSIEETVRLAQELQGHVHWFDLSSAGIGDTYEGPQGPGYQV
+PLATAVKEGTEGIVV--SAVGSLTGAEEVAAVVDEDRADAVCVGRAALANPN----W---
+-------PT-----AAALALDVPSEQVPMARQYFRAKW
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000066.fa

@@ -0,0 +1,37 @@
+>AS2_ACLBLIBL_00111
+MHDAGHTDYSAAHIARTADGTAASGAVSAGPGGRRPGPTTPADAGRSRGSRYADRVSEDL
+RILIADDQPLMSGALRVLVSSAPGMTCVGVVANGAEAVEACAAVEPDVVLMDMQMPLMDG
+VEATSRIKEAHPGIRILAITTFTSEDYLVPALRAGAGGYLLKDAEPPAILGAIHAVHRGE
+SVLSPAVASKLLASIERDHPVVGPAQARPGDPDG--SDLTDRERDVLRLLARGQSNPEIA
+ANLHVSESTIKSNLTRIMDKLEVRDRVQVIIRAAQLGLVTLSLD
+>KBS0714_MOLHKGIG_00258
+M-------------------------------------------------------SEEL
+RILIADDQPLMSGALRVLVDSAPGMTCVGVVANGVEAVEACAAIEPDVVLMDMQMPLMDG
+MEATRRIKDTHPAIRVLAITTFTSEDYLVPALRAGAGGYLLKDAEPPAILGAIQAVHRGE
+SVLSPAVATKLLASIERDRPTVGPTSVQPGSPDG--SDLTERELGVLRLLARGQSNPEIA
+ANLFVSESTVKANLTRIMAKLEVRDRVQLIIRAAQLGLVTLALD
+>KD337_NAFOICDF_00079
+M---------------------------------------------------PDSPEDEI
+RVLIADDQPLMSGALRVLVDSAPGMRCVGLVADGVEAVEAVEATRVDVVLMDMQMPRMDG
+VEATRRITASRPGTRVLAVTTFSSEDYLVPALRAGAAGYLLKDAEPATVLGAVEAVRRGE
+SVLSPAVAAKLIAAVERDHPVVGPAAAEPGDPDG--SDLTEREHQVLTLLARGRSNPEIA
+AELQVSESTVKANVGRVIDKLEVRDRVQVVIRAAQLGLVTLSLD
+>KD337_NAFOICDF_00526
+M--------------------------------------------------------DAI
+TVLIVEDEPLLTQAYTMILEADPGIRVVGTASDGAAGVAEHERLRPDVVLMDLRMPVLDG
+VEATGRIMREHPEAKVLVVTSMTTEDYLSPALANGAAGYLTKDTDAEGLVRAVRAVEAGT
+MALGPSIAREVVDLLLRSG--VAPRTDAPASPRDLPEALTPREQDVLELLAEGLTNQEMA
+ARLYVSDSTVKSNLARVMHKLGANNRVQALVLGVRAGLVSIP-G
+>SA211_MHAAABBN_02272
+M-------------------------------------------------------SEEL
+RILIADDQPLMSGALRVLVASAPGMTCVGVVANGVEAVEACAAVEPDVVLMDMQMPLMDG
+VEATRRIKEAHPEVRVLAITTFTSEDYLVPALRAGAGGYLLKDAEPPAILGAIQAVHRGE
+SVLSPAVATKLLASIERDRPTVGPTSVQPGSPDG--SDLTERELGVLRLLARGQSNPEIA
+ANLFVSESTVKANLTRIMAKLEVRDRVQLIIRAAQLGLVTLALD
+>TT9_LFPAFLNI_00257
+M-------------------------------------------------------SEEL
+RILIADDQPLMSGALRVLVDSAPGMTCVGVVANGVEAVEACAAIEPDVVLMDMQMPLMDG
+VEATRRIKDTHPAIRVLAITTFTSEDYLVPALRAGAGGYLLKDAEPPAILGAIQAVHRGE
+SVLSPAVATKLLASIERDRPTVGPTSVQPGSPDG--SDLTERELGVLRLLARGQSNPEIA
+ANLFVSESTVKANLTRIMAKLEVRDRVQLIIRAAQLGLVTLALD
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000072.fa

@@ -0,0 +1,37 @@
+>AS2_ACLBLIBL_00163
+MSALAARARAGLAHAVLAVAGARIHASGPDGAEEAEITRERLAALL--------------
+PRQAVFY--ANHTSHLDFVTLWAVLPPALQRRVRPVAAADYW-GSGLRRRVAEGLFHAYL
+VERGKTRRRGPGAASGSGVSPDGGSQLEGMLEILAGGDSLIIFPEGTRGSGEDVARFQRG
+LHALAAAFPQVPVVPVSLVNLGRILPKGEPIPVPHLSTVRFHPPLDPPEPARPPGPGAPA
+SGTAA-TDAPEPGRGEDEAARTAWLERARAVLVQDLSASLRG
+>AS2_ACLBLIBL_01775
+MAT-------------------------------SEPVRRSAAALLRLTCRPEVTGMDQV
+PAEGPFIMASNHLSFFDSVILQALAP----RPVHFFAKEEYFTGAGVRGRAQRWFFESV-
+--GSVPVRRGEQAASVAA--------LESLVGLLDSGQGVGIYPEGTRSRDGRLYRGRTG
+AAWLALT-TGAPVVPVGLVDTQHLQPPDTNGFRPHRFAVRVGAPLDFGHPGRRHTLPQRR
+DATAAIMDAIGALSGQERLDAYNAAPGAR------------G
+>KBS0714_MOLHKGIG_01118
+MAT-------------------------------SEPVRRSAAALLRLTCRPEVVGMEHV
+PARGPFVMASNHLSFVDSVILQALAP----RPVHFFAKEEYFTGTGLRGRVRRRFFESV-
+--GSVPVRRGEQAASVAA--------LESLVGLLESGQGVGIYPEGTRSRDGRLYRGRTG
+AAWLALA-TGARVVPVGLVGTQHLQPPDTNGFRPHRFSVRVGAPLDFGHPGRRHTLPQRR
+DATAAIMDAIGALSGQERVDAYNAAPGAR------------G
+>KD337_NAFOICDF_01668
+MAT-------------------------------SEQLRRAVAGAIRLSCRPHVRGLEHV
+PPEGPFIVASNHLSFVDSVILQALCP----RPVGFFAKAEYFEAPGLRGRAQRRFFEAV-
+--GSIPVRRGEQAASVAA--------LEDLVALLDGGHGVGIYPEGTRSRDGRLYRGRTG
+AAWLALT-TGAPVVPVGLRGTERLQPPGTNGFRPHRFTVEMGEPLDFGHPGRRHSLPQRR
+EATATIMAAIAALSGQERVDEYNAAPAAR------------G
+>SA211_MHAAABBN_00837
+MAT-------------------------------SEPVRRSAAALLRLTCRPEVVGMEHV
+PARGPFVMASNHLSFVDSVILQALAP----RPVHFFAKEEYFTGTGLRGRVRRRFFESV-
+--GSVPVRRGEQAASVAA--------LESLVGLLESGQGVGIYPEGTRSRDGRLYRGRTG
+AAWLALA-TGAPVVPVGLVGTQHLQPPDTNGFRPHRFSVRVGAPLDFGHPGRRHTLPQRR
+DATAAIMDAIGALSGQERVDAYNAAPGAR------------G
+>TT9_LFPAFLNI_01068
+MAT-------------------------------SEPVRRSAAALLRLTCRPEVVGMEHV
+PARGPFVMASNHLSFVDSVILQALAP----RPVHFFAKEEYFTGTGLRGRVRRRFFESV-
+--GSVPVRRGEQAASVAA--------LESLVGLLESGQGVGIYPEGTRSRDGRLYRGRTG
+AAWLALA-TGAPVVPVGLVGTQHLQPPDTNGFRPHRFSVRVGAPLDFGHPGRRHTLPQRR
+DATAAIMDAIGALSGQERVDAYNAAPGAR------------G
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000079.fa

@@ -0,0 +1,49 @@
+>AS2_ACLBLIBL_00197
+MRLIPLVLLSLLCQQLGASVAGLMFGTTGPAGMVALRLAFSALVLLVLTRPRMRTLAGLS
+RRGWVAVVMLGVTMAGMNLLIYAA--FDRIPQGVAVTFEVLGPLALSVLAN---RRWLSV
+VW---AALAFAGIALLGRDGFSA--GMDGAGLDPLGVAFALAAAACWAGFILANR---HA
+GTHLPGVQGLALAMVVGSAVAVPVGAADAGPVLLEPWVLAVGLGVALLSSSIPYGIEMQV
+LRTMPTGLFSLITCLSPVVAALTAWAVRGQRLAVLDLGGMGLV-----VLACGAAVWAAE
+RAAR--------------PSRRAPRTS---------------------------------
+----------------------------------------------
+>KBS0714_MOLHKGIG_00198
+MRLVLLVLLSLLSQQLGASVAGLLFDDVGASAMVALRVVFSAAVLLLVTRPSRAALAGLG
+PRGWAAVVGLGAAMTGMNLAIYEA--FARIPQGVAVTFEVLGPLALSVAAR---PSWRSA
+AW---AALALAGIGVLGREGFSADGGIGGAGLDPVGVALALAAAACWAGYILLSR---RA
+GTHLPGVQGLALATAAGSLVALPVGVATAGAALLSPVVLGVGLAVALLSTAVPYGIDLQV
+LRRMPTALFSLLTCLSPIAAALTAWAVRGQELTPLDLAGMLLV-----IAACAAAVWTS-
+---------------------RSPGVA---GGGRG-------------------------
+----------------------------------------------
+>KD337_NAFOICDF_00149
+MRLVLLVLLSLLSQQLGASVAGLLFDDVGASAMVALRVVFSAAVLLLVTRPSRAALAGLG
+PRGWAAVVGLGAAMTGMNLAIYEA--FARIPQGVAVTFEVLGPLALSVAAR---PSWRSA
+AW---AALALAGIGVLGREGFSADGGIGGAGLDPVGVALALAAAACWAAYILLSR---RA
+GTHLPGVQGLALATAAGSLVALPVGVATAGAALLSPVVLGVGLAVALLSTAVPYGIDLQV
+LRRMPTALFSLLTCLSPIAAALTAWAVRGQELTPLDLAGMLLV-----IAACAAAVWTS-
+---------------------RSPGVA---GGGRG-------------------------
+----------------------------------------------
+>SA211_MHAAABBN_02026
+M-----------------------------------------------------------
+------------AVAVYPLAFYTSIHWAGVAIGSVVSLAS-APLASGLLERIVEYRRLSR
+WWMLAAALGGTGAALLCLSQLDQ--EAASSTATLAGVLLGLVAGATYATYSWAAHRLIHD
+GISRAASMGAVFG--AGGALLLPVLVLTGAPLIATPQAFAVAAYMALVPMFLGYVLFGYG
+LTRVPASTATTITLTEPAIAAILAVAVVGERLTPVGWTGLGIIAAVLFILALTPTNTTAD
+RHGRTPTSEAIQPALAPSPRRHNERTSPRDDAGRGSDVMWVSQTMRCQGATRPSRWEGVR
+GRFRKPYRLRPVSPDHGRATCGERTEIMRPARGLDARSVLAATMET
+>SA211_MHAAABBN_02194
+MRLVLLVLLSLLSQQLGASVAGLLFDDVGASAMVALRVVFSAAVLLLVTRPSRAALAGLG
+PRGWAAVVGLGAAMTGMNLAIYEA--FARIPQGVAVTFEVLGPLALSVAAR---PSWRSA
+AW---AALALAGIGVLGREGFSADGRIGGAGLDPVGVALALAAAACWAAYILLSQ---RA
+GTHLPGVQGLALATAAGSLVALPVGVATAGAALLSPVVLGVGLAVALLSTAVPYGIDLQV
+LRRMPTALFSLLTCLSPIAAALTAWAVRGQQLTPLDLAGMLLV-----IAACAAAVWTS-
+---------------------RSPGVS---GGARG-------------------------
+----------------------------------------------
+>TT9_LFPAFLNI_00198
+MRLVLLVLLSLLSQQLGASVAGLLFDDVGASAMVALRVVFSAAVLLLVTRPSRAALAGLG
+PRGWAAVVGLGAAMTGMNLAIYEA--FARIPQGVAVTFEVLGPLALSVAAR---PSWRSA
+AW---AALALVGIGVLGREGFSADGGIGGAGLDPVGVALALAAAACWAAYILLSR---RA
+GTHLPGVQGLALATAAGSLVALPVGVATAGTALLSPVVLGVGLAVALLSTAVPYGIDLQV
+LRHMPTALFSLLTCLSPIAAALTAWAVRGQELTPLDLAGMLLV-----IAACAAAVWTG-
+---------------------RSPGVA---GGGRS-------------------------
+----------------------------------------------
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000085.fa

@@ -0,0 +1,49 @@
+>AS2_ACLBLIBL_00354
+MQQIHD-PASRGFASDNYSGVHPEVLAAIAEANGGHQTAYGEDAYTGRLAEVVRGHF-GE
+DAQVWPMFNGTGANVVALQSMLPRWGAVICADTAHIHVDEGGAPEKSAGIKLLTVPTPDG
+KLTPELIDVQAWGWGDEHRAQPLVVAITQSTELGTLYTPEEIRAITEHAHARGMTVFLDG
+ARLANAAAALDLPLRAFTTDVGVDVLSLGGTKNGALGAEAVVALNPAATT----------
+--------------GMTYLRKSQMQLASKMRFVSAQLLALFDGDLYLRTARHANAMAQRL
+QDAVAAGIADGSLPGVALTQRAQVNAVFATLPAGVADRLRRSFRFYDWDEANGEVRWVCS
+FDTAEEDVDAFVAALRAELAPA--D
+>AS2_ACLBLIBL_01608
+MSAGAPAAGLRAFASDNYAGVHPDVWAALADVDAHHAPAYGADPHTERLQEAVREAFDAP
+DAVALPVFNGTGANVVALQSMLPPWGAVVAADTSHIHHDEGGAPERMGRTKLFTVPTPDG
+RLTPELVDREAHGWGFVHRAQPAVVEIAQVTELGTVYTPEQVRALADHAHGHGMGLYMDG
+ARLFNAAAALELPLSAFTTHAGVHVVSLGGTKAGALGAEAVVVLRPEAVTLASLVPERDL
+PAD--AGPRERARLAVEYVRKSSMQLASKMRYVSAQLTALLKGDLGIRLAGHANAMAREL
+AGRV-AGI-----DGVEVTRTPEANAVFAVLDPQAADRARVRHPFYDWDAARHEVRWMTS
+WDTTAADVDSFAAALGEALSPGRRR
+>KBS0714_MOLHKGIG_00049
+MQRIHD-PQERGFASDNYSGVHPEVLAAIAEANGGHQVAYGEDVYTARLQEVVAQHF-GE
+DATVWPMFNGTGANVVGLQAMLPRWGAVICADTAHIHVDEGGAPEKSAGIKLLPVATDDG
+KLTPELIAAEAWGWGDEHRAQPLVVYLTQSTELGTVYTPDEVKAITDYAHEHGMRVYMDG
+ARIANAAASLGLPLRAFTTDVGVDVLSLGGTKNGALLAEAVVVLDPDAAD----------
+--------------GLVYLRKNQMQLASKMRFVSAQLLALFDGDLYLRSARHANAMAARL
+RAGIEAGVADGSLAGVEFTQATDANAVFAVLPEGVADRLRARFRFYDWDAARREVRWVCG
+FDTTEEDVDAFTAALRAELVPA--A
+>KD337_NAFOICDF_01503
+MSAARP-AGLRAFASDNYAGVHPDVWAAMADADADHAVSYGEDPTSAALQEKVREVF-GE
+RAFAVPVFTGTAANVLALQALTPPWGSVVTAASSHLIHDEGGAPERLGRTPLVPVPTPDG
+RLTGELAAAHVRRDGFVHASQPAVVEIAQATELGTVYSAAQVREVADAAHAAGAALYMDG
+ARLSNAAAALDLPLRAFTTDAGVDVVSYGGTKNGGLGAEAVIVLNPEAVVAARMVGPADV
+PGGDAADARDRARAALGYLRKQDMQLASKHRYLAAQLLALLTDDLGIALAAQANRMARVL
+ADAV-AGL-----DDVELARAPEANAVFARLDPDVAAEVRLRHPFYDWDAAAHEVRWMTS
+WDTTDADVESFVDALAAALRARRPR
+>SA211_MHAAABBN_02062
+MQRIHD-PQERGFASDNYSGVHPEVLAAIAEANGGHQVAYGEDVYTARLQEVVAQHF-GE
+DATVWPMFNGTGANVVGLQAMLPRWGAVICADTAHIHVDEGGAPEKSAGIKLLPVATDDG
+KLTPELIAAEAWGWGDEHRAQPLVVYLTQSTELGTVYTPEEVKAITDYAHEHGMRVYMDG
+ARIANAAASLGLPLRAFTTDVGVDVLSLGGTKNGALLAEAVVVLDPDAAD----------
+--------------GLVYLRKNQMQLASKMRFVSAQLLALFDGDLYLRSARHANAMAARL
+RAGIEAGVADGSLAGVEFTQATDANAVFAVLPEGVADRLRTRFRFYDWDAARREVRWVCG
+FDTTEEDVDAFTAALRAELVPA--A
+>TT9_LFPAFLNI_00044
+MQRIHD-PQERGFASDNYSGVHPEVLAAIAEANGGHQVAYGEDVYTARLQEVVAQHF-GK
+DATAWPMFNGTGANVVGLQTMLPRWGAVICADTAHIHVDEGGAPEKSAGIKLLPVATDDG
+KLTPELIAAEAWGWGDEHRAQPLVVYLTQSTELGTVYTPDEVKAITDYAHEHGMRVYMDG
+ARIANAAASLGLPLRAFTTDVGVDVLSLGGTKNGALLAEAVVVLDPDAAD----------
+--------------GLVYLRKNQMQLASKMRFISAQLLALFDGDLYLRSARHANAMAARL
+RAGIEAGVADGSLAGVEFTQATDANAVFAVLPEGVADRLRARFRFYDWDAARREVRWVCG
+FDTTEEDVDAFTAALRAELVPA--V
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000090.fa

@@ -0,0 +1,60 @@
+>AS2_ACLBLIBL_00432
+MKTSRRGGLGRGLGALIQSTAEPVDEAPQEADATAEDATAPTAAPAEKKAATSTARRLSKETSEAKTPAPRAASASKSSG
+GAAKEAPADKKAGSAGRAPAAAKKATPTKKASSSAGEAKANSAAAPAAARKTPDRAAQRPVDVFF------SPDPEDAPA
+ARRGTKARPAMPTVKAPTKREAASSSGEEAAAGA---STAAEGTVSTDIAVLREIPVGDIHPNPRQPREVFDEEHMAELV
+TSIREVGILQPIVVREVDG-PTPYELIMGERRWRATQKAGLDAIPAIVRQTPDQDLLRDA--LLENLHRSQLNALEEAAA
+YQQLMEDFACTQEELAERIGRSRPQISNTLRLLKLPPLVQRRVAAGTLSAGHARALLGLTDPSDMERLAQRIQAEGLSVR
+ATEEAVAQLQGGLRPGRTPRRTADDA-RHERLDHYATALTSRLDTSVK--------------------------------
+-----------ITLGARKGRIAIDFTTVEDLNRIMDVIQ---------------GEKGG---------------------
+---------------------------RGAAS------------------------------------------------
+--------------
+>AS2_ACLBLIBL_01948
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------------------------------------------------------MV
+ASVKTQGLLQPLVVAPNPTLEGDYTIIAGHRRLDALKRAGRDDAPVIVRTDLDTEEKQVAAMLQENLHRQDLTAVEEADA
+FAQLSLFEGWDVKRIARETGVAQTRVRSRIKLTYLSEATLASLHDGQVTLERAQALAEFAGSPEEELL-----EEHLTAT
+ATNWDFYLARAKQTRDRRKALSAEQK-AHEEAGFEVVPMPESLYTPEREWDRQDFESPTAALEAGAVVAFDPDYDAPVYL
+VKHAEQELEKDAAAAERKAEAAERAARNEALERELATAQETVRLWLVDTVFPKAAAGDERILRVAARHLAATACEETHFR
+RAGLAAIFCPDLGAYAPELRTAVAEVLAGKSAQELAVIIAVATRWTSTARVHAWRDATREDSSPAVWLAMRQELGRELAA
+PEQVAFDAAKAGEL
+>KBS0714_MOLHKGIG_02305
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+----------MPTVKAPSKRATSATSSRKEPGDSSVESAATEGTVSADIAVLREIPVGDIHPNPRQPREVFDEDHMAELV
+TSIREVGILQPIVVREVDG-PTPHELIMGERRWRATQKAGLDTIPAIVRQTPDQDLLRDA--LLENLHRSQLNPLEEAAA
+YQQLMEDFACTQEELSQRIGRSRPQISNTLRLLKLPPLVQRRVAAGTLSAGHARALLGLTDPSDMERLAQRIQSEGLSVR
+STEEAVAQLQGGLRPGRTPRRSTDDA-RHERLDHYATALTSRLDTAVK--------------------------------
+-----------ITLGARKGRIAIDFTTVEDLNRIMDLIQ---------------GGQDG---------------------
+---------------------------KGKGKKS----------------------------------------------
+--------------
+>KD337_NAFOICDF_00384
+M-STRRGGLGRGLGALIQNTAE-IEQPPTREDSSPSAASSNKTTAAPAKRSTRTAR--TAESSQNGLPASDGAT------
+---------QQDHSSDRAEKTASSGTGSQKTSRSTG-SKGAKTPEPTATRSAQEEVP-RPADIFFGGGEGTSDEPPESGR
+HRPTRSARPSMPTVKAPSKPAPKSETEQAAP----VRKDEPEGTVSADIAVLRELPVGDIHPNPRQPREVFDEDHMAELV
+ASITEVGVLQPIVVREVEGAATPYELIMGERRWRATQRAGLATIPAIVRQTPDQDLLRDA--LLENLHRSQLNPLEEAAA
+YQQLMEDFSCTQEELSQRIGRSRPQISNTLRLLKLPPLVQRRVAAGALTAGHARALLGLTDPAEMERLAQRIVSEGLSVR
+ATEDAVAQLQGAVRPAPKSTRSREESTRHERLDYFATALTSRLDTQVK--------------------------------
+-----------ITLGARKGKIAIDFASVEDLNRIMDLIQ---------------GGGDS---------------------
+--------------------TPV----KG---------------------------------------------------
+--------------
+>SA211_MHAAABBN_01998
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+----------MPTVKAPSKRATSATSSRKEPGDSSVESAATEGTVSADIAVLREIPVGDIHPNPRQPREVFDEDHMAELV
+TSIREVGILQPIVVREVDG-PTPHELIMGERRWRATQKAGLDTIPAIVRQTPDQDLLRDA--LLENLHRSQLNPLEEAAA
+YQQLMEDFACTQEELSQRIGRSRPQISNTLRLLKLPPLVQRRVAAGTLSAGHARALLGLTDPSDMERLAQRIQSEGLSVR
+STEEAVAQLQGGLRPGRTPRRSTDDA-RHERLDHYATALTSRLDTAVK--------------------------------
+-----------ITLGARKGRIAIDFTTVEDLNRIMDLIQ---------------GGQDG---------------------
+---------------------------KGKGKKS----------------------------------------------
+--------------
+>TT9_LFPAFLNI_02246
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+----------MPTVKAPSKRATSATSSRKEPGDSSVESAATEGTVSADIAVLREIPVGDIHPNPRQPREVFDEDHMAELV
+TSIREVGILQPIVVREVDG-PTPYELIMGERRWRATQKAGLDTIPAIVRQTPDQDLLRDA--LLENLHRSQLNPLEEAAA
+YQQLMEDFACTQEELSQRIGRSRPQISNTLRLLKLPPLVQRRVAAGTLSAGHARALLGLTDPSDMERLAQRIQSEGLSVR
+STEEAVAQLQGGLRPGRTPRRSTDDA-RHERLDHYATALTSRLDTAVK--------------------------------
+-----------ITLGARKGRIAIDFTTVEDLNRIMDLIQ---------------GGQDG---------------------
+---------------------------KGKGKKS----------------------------------------------
+--------------

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000092.fa

@@ -0,0 +1,60 @@
+>AS2_ACLBLIBL_00464
+M---------------------------------------------ANTPGSGALIVGVSKTAELI------GTALDREW
+LRFRLYELTGR-ALTVDVQEVQVQGARLLVLYPPAAVEPI------RVEGRI---RWRVDDHCAEVDAST----WFTRQM
+YRRQYDW------SAETSNVPAGEARPAAVDIARAFLYDSGDERGEELAEAETPQLLRRLNVVAEGGM---LTNAGVLAF
+VGRPE---PALDYTHHEVAGADSSIRVHRGGRS---------LLEELADVLQAFEARNTVRHVQSGLTI-GQLR-DIPRL
+A---AREALVNGLAHREWG-----DPGATRVEHIGRTLRVTSPGGFFGGVDPSNIITH--PSVSRNPALTQLLADL----
+--RVAERQGIGVDRMVREMVRVGHPQPGIEEVAGPYVRTTLVGETLDEPWM-AWLSQVQ---PRPLTRDVSAVLILRHLV
+DRVWIDEMTAAALTQVSRAESRSM--LER----LHTATVGGGTILEAVSGVPDAVPQAWRLG-----EAAAQLLAALDQE
+TGIQRTVPDR---------RALAADYARARGRISTTELASLVGGHASNMGAPLRALETEGFLEPSNASRRGRGFFYRWVG
+DEPA-----
+>KBS0714_MOLHKGIG_00037
+M------LDEV-LAQLRSTGSETALIEVKSAAGGCPRSVRETLSAFANARG-GVVVLGLDDS--TFEPTGA-DAPALRDA
+LAGMAADDMTP-PVRGVISIENAEGGHQVVVMEVPEFAPDQKPCYITAAGRYQGSYTRSDEGDRRLTAYE----IDRL--
+--IEGQG-QPQHDREPVHGATADDLRPDLVEALTGRL-RTVQPRA--FGSLTDQECLRRANVLVDADGVLVPTLAGLLAC
+GEYPQGFFPQLSISVVVLPGTTFGDTGPHGERFVDNRTCEGPLVDMIADARDVLVRHMSRASVIDGTGR-ADRL-EYPLE
+V---IRELLVNAVMHRDYSAGA--RGTQVQVELYPDRLVVRSPGGFFGPVDPSSFGEP-DVSSSRNSVLARLLSDLPGSD
+GRMIAENRGSGIPTVLKVLEAAGMVPPEFHSTLTR-VEVDVAHDSLLTAETHEWI---QGLGQDGLTQ--WQIQALALAR
+SGRTVRNQTLQGWGAHQADATRELSDLVRRGLTVKLGDRRGA----RYTLNPDYVPPAAETGAGGLSERQQAILRAL---
+----------------------------ADGPMKATEVGDAVGTSYRTAMNALNDLIEAGLVEPT-APPRSRRRRYRLTP
+QEETA----
+>KBS0714_MOLHKGIG_00568
+MDVI--QLDQTQLMAL-LSRAEGHFLDYKRTDVA-PGKLTRSLAAFCNSDG-GDIYVGIAETDGTQSWQGAADPEEFNGH
+L--QAFEEVSPFGADWNAEFITAQNESGYVLRINALKSRQVRS---DSSGKV---YKRVGAQNVPVDSEEGLQTLRRLKG
+LESFEEE-TLNVDMEEVTNST--HIIKFLVN----------------DPSPTDPELYLKRQQLIRGGK---PTVASALLF
+AELPQAMLPKRCGIKIY---RYTSSVAHRDQLYSDPVTVEGYL---YGQIYEAVDQTIDIINQAQFLDVDGLRQVRYPRE
+T---LHEVITNAVLHRDYS-----IQDDIHVRIFENRVEVQSPGRLPGHITLKNILEE---RLSRNGHLVRNINRFVDPP
+NKDV----GEGLNTAFESMRKFNLKEPIIEELENS-VMVTIRHQSLASPEQ----------------------QIMEYLA
+EHSQIRNQEARNLVGIE---------------------------------------------------------------
+--------------------------------------------SESKMKKILQGLVGTGEIEHV-PGTAKRGYAYRARA
+EAAAQEGNR
+>KBS0714_MOLHKGIG_02274
+MNWSSDDLTAT-LDALRARRGDTTSVEVKRATGGVP-SMPETLCAFANMPDGGTVVCGVDEAHGEFRVVGVPDVAVLEAG
+LVAQAREAVTP-SPTLLPQVFRLEGKDVLVAHVVPLRLTDRPA---TVRGQA---YLRQSDGDYVMHAHE----LRMVEV
+AKLHADE-RVDYDVKPVTGMSEEDLVPELVTDYVAAV--RERDRR--LRDRTHQEILRQTNVLTAAGE---PTLAGLYAL
+GDYPQGRYPGLTVTAAV---QVRGGEGQARSRNLTDFT--GPVPVLLDEVMAWVRQNLGTEHVYRPDGQ-LERRPELPLA
+A---VRELLGNALVHRDLGPDTLGAGKAIQVRLTDRALFIQSPGGLRG-VSLTQLESDEHAQAAVNQRLYQIAKKLTTPD
+GASVIEGEGGGIHEVFRSARQWGLGRPQLIDT---------------------------------------GVQFKALLW
+RPRPEGARPSRREPAVEVARTPPV---------EEVPDVKAD-------APSSAVPPSSAPT-----RHEGRVLGALA--
+----------------------------AGEAVGIRDLEEATMLTARQIRYALRQPLLDGLVEMT-GGQGHKDTRYRLVS
+ARGAGD---
+>KD337_NAFOICDF_00427
+MD----------LGPL-LAAGETLDVEFKRRLG--KDDLYQAVVCMANGIG-GRILVGVDDDGTVVGTTADHGGAVDADL
+LAGRIQNGIEP-PLSVDVEVVPWEGKDVAVITVPQAKSSFVG----TRKGLF---VKRVVGPDGRPACMP----MTPMDV
+LRAGFDGVGLDYARAEARGAEWGHLDPTEFDRFRRLAGQSAGDSG--LAELTDAELLRTLDLLTPDGG---ISLGAVLVF
+GTSEALRRWAPTAEVLF---QDSRPHGVEANED---------LLLPLLNAFEEIETRLALRNSITPVEV-GLVRVDVPLL
+AESVRRESIANALVHRDYA-----EAGPIQVTLTGSTFSVASPGGFPRDVSPANILNR---SAPRSPALANVFKRA----
+--GLVERRGKGVQDMFASQLRAGRGAPDYSRSTHRSVIVDIPLGDEDRELL-IFLARRQNEGQRALT-----------LT
+ELRVVHEIKHGGPAGAAEAAERLR---------LPVADVRAA----ATALVEAGVLESRGNG-----RAQRYMLTARFYE
+LAEDRAAYLRLRPVDRIQQRRLIADYIREYGSITRGKAAELCQIAPTAARAVLKGMTEEGLLELR----GERRAAHYVLP
+DS-------
+>TT9_LFPAFLNI_02208
+M-----------------RRGDTTNVEVKRAAGGVP-QLAETLCAFANMPEGGTIILGVDEARGAFNVTGVADVALLEAG
+VAAQAREGVTP-SPQIIPQTLQLDERQVLLIHVVPLRTADKPA---TVQGVA---YLRQSDGDYRMHEHE----LRMLEV
+AKLHADE-RVDYELKVATGLGEQDLVSSLVDEYVAAV--RRKNRR--LRDRTSEEILRQTSVLTSSGE---PTLAGLYAL
+GDFPQGRFPGLTVTAAV---QLPGGEGQPRNRNLEDFV--GPLPDLLRDLMAWVSDNIDTVRRYRRDGH-MEEVAELPLT
+A---VRELLANALVHRDLGPSTLGMGKGVQVRLTPRNLFIQNPGGLQG-LSLTQLQSDDHAQAAVNQRLYQFAKKLTTSD
+GASLIEGEGGGIREVFRAAERQGLPRPQLIDT---------------------------------------GVQFKAILW
+RAADRNAR-----AGVEDAKGASA---------VET-------------AVPRAVPASASPT-----RHEHAVLAALV--
+---------------------------RMPDGATLRALTSVTGLTDRQVRYALRLPLDEGIVVMD-GGQGNRQTAYRLMS
+DSRRP----

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000096.fa

@@ -0,0 +1,84 @@
+>AS2_ACLBLIBL_00566
+MD-----SPASPGAP-HPETTRPADVVARLQAALPGRVDVSPPPSRPPARDRSGHRSPAVPLAVVHAASVADVQAVCRLA
+HETRTPLVTRGAGTGLAGGAVAGAGEVVLDVMGMDRILEVSPADRVAVVEPGILNGALNAALAEHGLWWAPDPASKDIST
+VGGNIAMNAGGLLCAKYGVTREAVLGLDVVLADGT-----------------------LMRLGHR---------------
+TVKGVTGYDLTALM-------------IGSEGTLGVIVGATLS--LRPAVRGTQVTLGGFFPDVVAGAAAAEAVTGAGHV
+PALMELMDEVTLAAVRADAG--PERGAALPESGAFLLVQADGAGAEEDGAAMADLMRAHGGDVT----------VTADHA
+EGEALMALRRTAFPALE----RLGTPLVEDVAVPRSRMAEMFARIRDIEARTGIPIPTT-AHAGDGNLHPILLFGAAAQV
+GGAAEDATSIPADVWEAAG---ELFRAGLELGGTLTGEHGVGLLKRAFLRDELGDAQHALQAKIKAVFDPHGILNPGKVF
+-----------------------------------------TP-------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------
+>KBS0714_MOLHKGIG_02184
+MDFSAPLDP-TPAAP-PAADAPPADVVARLQAELPGRVDVSAAALEAARADRSGHRSPAAPLAVVRARTVEDVQAACRIA
+HGTRTPLVTRGAGTGLAGGAVAGAGEIVLDMTAMDRILEVSPADRVAVVEPGILNGALNAALAEHGLWWAPDPASKDIST
+VGGNIAMNAGGLLCAKYGVTREAVLGLDVVLADGT-----------------------LLRLGHR---------------
+TVKGVTGYDLVALM-------------IGSEGTLGVIVGATLA--LRPAVRGVPVTLGGFFPDVVAGAAAAEAITGAGHV
+PALMELMDEATLAAVRAHAG--PERGAALPESGAFLLVQADGAGAEADGEAMAALMRTHGGDVT----------VTVDPA
+EGEALMALRRTAFPALE----RLGTPLVEDVAVPRSRMAEMFARIREIEARTGVAIPTT-AHAGDGNLHPILLFGAAAQV
+GGAAEDAASIPADVWEAAG---ELFRAGLELGGTLTGEHGVGLLKRAFLRDELGDAQHDLQQRIKAVFDPHGILNPGKVF
+-----------------------------------------TP-------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------
+>KD337_NAFOICDF_00491
+MT--------------CIISVSPDDVLHRLRAALGDAVVTDPAALEPLRADRSGHRSPGAPLAAVRARTVEDVQAACRIA
+HATGTPLVTRGAGTGLAGGAVAGPGQVVLDLSGMDRILEVAPEDRVAVVEPGVLNGALNRALEPHGLWWAPDPASKEIST
+VGGNIAMNAGGLLCAKYGVTREAVLGLAVVLADGT-----------------------LMRLGHR---------------
+TVKGVTGYDLTALM-------------IGSEGTLGVIVEATLA--LRPLPEGAVHTLGAFFPDVAVGARAAAAITGAGHV
+PAIMELMDEATLAAVRAHVS--ADDAARLPETGAFLLVQADGPGADEQAAAMAELIRSAGGEVT----------VTADPA
+EADRLVSLRRTAFPALE----ALGTPLVEDVAVPRSRMPEMFARIREIEAETGLRIPTS-AHAGDGNLHPVVLFGEPSRV
+GGEDGAQEAIPAEVWAAAG---MLFRAGLELGGTLTGEHGVGLLKRAFLKEELGEAQHGLQERIKAVFDPRGILNPGIVF
+-----------------------------------------TP-------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------
+>SA211_MHAAABBN_01898
+MDFSAPLAPAAPLAPAPAADAPPADVVARLQAELPGRVDVSAAALQAARADRSGHRSPAAPRAVVRARTVEDVQAACRIA
+HGTRTPLVTRGAGTGLAGGAVAGAGEIVLDMTAMDRILEVSPADRVAVVEPGILNGALNAALAEHGLWWAPDPASKDIST
+VGGNIAMNAGGLLCAKYGVTREAVLGLDVVLADGT-----------------------LLRLGHR---------------
+TVKGVTGYDLVALM-------------IGSEGTLGVIVGATLA--LRPAVRGVPVTLGGFFPDVVAGAAAAEAITGAGHV
+PALMELMDEATLAAVRAHAG--PERGAALPESGAFLLVQADGAGAEADGEAMAALMRAHGGDVT----------VTVDPA
+EGEALMALRRTAFPALE----RLGTPLVEDVAVPRSRMAEMFARIREIEARTGVAIPTT-AHAGDGNLHPILLFGAAAQV
+GGAAEDAASIPADVWEAAG---ELFRAGLELGGTLTGEHGVGLLKRAFLRDELGDAQHDLQQRIKAVFDPHGILNPGKVF
+-----------------------------------------TP-------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------
+>TT9_LFPAFLNI_00166
+MLRSL------------------EDVLTK-----PGQVSGRALDRHAAAADASHFL--LVPEAVVTPTDAAEVGALMRAS
+AAQGVSLTFRSGGTSLSGQAVTDS--VLVDVRKNFRDIEVLDEGARVRVRPGATVRQVNARLARHGRRLGPDPASEAACT
+IGGVVANNSSGMNCGITENTYQTLESMTLVLPSGTVIDTAAPDADGILRHHEPHLYRGLAQLADRVRSDSASVATVRRQF
+SMKNTMGYGLNALLDFDTPAQILAHLAIGSEGTLGFVAEAVFRTVVRPTHSATALLV---FEELQAANEALPALVDSR--
+AATVELLDATSLRVGQRLTGTPPIVRDLRVQDHAALLVEYSATTAEQ-----LEELRQHGEALTGRIGLSQPAGFTTDAD
+ARAALWHLRKGLYASVAGARPQGTTALLEDIVVPVLALGRTCTALTQLFDRYDYRDSVIFGHAKDGNVHFML--------
+----TDDFADPARLQRYSDFTEDMVDLVLGEGGSLKAEHGTGRVMAPYVRRQYGDELYGVMREIKQLCDPGGVLNPGVLL
+NDDPQAHLRHIKAEPSVAEEVDRCVSCGYCEPVCPSRDLTLTPRQRIVTLRAIRSARLAGDEALAQSLEEDYDYAAVQTC
+AVDGMCQTACPVEINTGDLVKRLRRQETGAVAQAGWNLAAQHWGTASIVAGRALDLAAKLPAAATITANQLVRRIAGADS
+VPLYSPELPRGGGRRRRPAPVGEPVAVYFPACVSAMFGPAQPGTGAPGAAGVQDSVLALAQRAGVELLVPSDIDALCCGT
+PWSSKGKHTGQETITGRTIAALRRDSDHGRLPIVCDASSCTEGLRHALEVEVPPAGQQPLRILDAVEFTAEHLLPRLPEP
+RRIPSLTLHPTCSSTRMGLNPALARVAEAIAEDVQIPDDWGCCAFAGDRGLLHPELTASATARQAEQVQAIDASAHASCN
+RTCELGMSRATGYPYSHVLELLNQSTIAGG
+>TT9_LFPAFLNI_02129
+MDSSAPLDP-TRAAP-PAADAPPADVVARLQAELPGRVDVSAAALEAARADRSGHRSPAAPLAVVRARTVEDVQAACRIA
+HGTRTPLVTRGAGTGLAGGAVAGAGEIVLDMTAMDRILEVSPADRVAVVEPGILNGALNAALAEHGLWWAPDPASKDIST
+VGGNIAMNAGGLLCAKYGVTREAVLGLDVVLADGT-----------------------LLRLGHR---------------
+TVKGVTGYDLVALM-------------IGSEGTLGVIVGATLA--LRPAVRGVPVTLGGFFPDVVAGAAAAEAITGAGHV
+PALMELMDEATLAAVRAHAG--PERGAALPESGAFLLVQADGAGAEADGEAMAALMRTHGGDVT----------VTVDPA
+EGEALMALRRTAFPALE----RLGTPLVEDVAVPRSRMAEMFARIREIEARTGVAIPTT-AHAGDGNLHPILLFGAAAQV
+GGAAEDAASIPADVWEAAG---ELFRAGLELGGTLTGEHGVGLLKRAFLRDELGDAQHDLQQRIKAVFDPHGILNPGKVF
+-----------------------------------------TP-------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000098.fa

@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00584
+MSPSPSGSVPSSSSVSAESRGMGAAAPGQAAVPGETGAAAAVETIRVSAVVLARPDRRVL
+TVRKAGTTMFMFPGGKHLPGEDPLDTAVREVAEETGLRLRPDELTRLGAWDTDAANEPGA
+ALHSEVFALWRPVARHETPAPTDEIVELHWMDPAAPAAPAGHQVAPLLVAVLAAVAKNPP
+F----------
+>KBS0714_MOLHKGIG_02168
+MSPSPSDS-------------------------ARTPTVTAGEVIRVSAVVLARPDRRVL
+TVRKAGTAMFMFPGGKHLPGEAPVDTAVREVAEETGLRLRPDELTRLGAWDTAAANEPGA
+ALHSEVFALWRPVARHEVPEPTDEIVALHWMDPAAPAAPGGHGVAPLLHPVLAAVAATPP
+F----------
+>KD337_NAFOICDF_00510
+MT-APAAR-------------------------SDEPA-----EIRVSAVVIARPDRRVL
+TVRKAGTAVFMFPGGKHEPGETPLETAVRETREETGLRIRPDELVHLGAWDTPAANEPGM
+ALHSEVFALWRPMARHEVPAADDEIAELHWMDPAAPAAPAGAGVAPLLLPVLARVAAQPL
+F----------
+>KD337_NAFOICDF_01906
+MA-APDFVL----------------------SLREHVGHAPLWLSGVKAVALRAGDREVL
+LVRRADDGRWTLPAGILEPGEEPADAAVREVAEETGVRCAPRRLAGVGTTAGAVYPNGDR
+ARYLDVVLVLDETGGH-AHVADDENLEVGWF-----SVDGLSDLPPLHARALSWALEDGP
+ARFVAGGDVLP
+>SA211_MHAAABBN_01882
+MSPSPSDS-------------------------SRTPTVAAGEVIRVSAVVLARPDRRVL
+TVRKAGTAMFMFPGGKHVPGEAPVDTAVREVAEETGLRLRPDELTRLGAWDTAAANEPGA
+ALHSEVFALWRPVARHEVPEPTDEIVELHWMDPAAPAAPGGHGVAPLLHPVLAAVAAAPP
+F----------
+>TT9_LFPAFLNI_02113
+MSPSPSDS-------------------------ARTPTVAGGEVIRVSAVVLARPDRRVL
+TVRKAGTAMFMFPGGKHLPGEAAVDTAVREVAEETGLRLRPDELTRLGAWDTAAANEPGA
+ALHSEVFALWRPVARHEVPEPTDEIVELHWMDPAAPAAPGGHGVAPLLHPVLAAVAAAPP
+F----------
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000100.fa

@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00640
+MERPAPTA-------EICPVRPEDTDAVVALWERTLPEY--GDPTRPQRAPRPSIRRKLD
+-WGDGLFWLAVSDEEVVGTV--------MAGYDGHRGWIYS-LAVHPDHRRGGLGTALVA
+H-AEQELARLGCPKVNLQVLATNADGAEFWAATGYQPDPVLG------------------
+-LGKRLG-G
+>AS2_ACLBLIBL_02391
+MTETAPTVPTPPARPQVRPLRPEDHEAVAAL---TVASYVDGGHIAPGSRYVKTLRDVAG
+RAARAEVLVAEVDGQVAGSVVLTPLGSPMAETAAPGEYEFRMLAVHPDHHRRGVARTLMA
+VIEERARALPGIEAIALTTMPTMTDAHRLYEALGYVRVPERDWYLRDVIPDLDPADETGP
+FLVYRLPLA
+>KBS0714_MOLHKGIG_00554
+MSAL------------VRPLRPEDHEAVAEL---TLASYVDGGHIAPDDAYVKTLMDVAD
+RAGRAEVLVAEVDGEVAGSVVLTPPGSPLAETSGDGEYEFRMLAVHPRFHRRGVGGALLA
+EIVARARAEEGVDAVVLTTMPSMTGAHRMYERAGFVRVPERDWFLADVVPDLDPADETGP
+FLVYRLALD
+>KD337_NAFOICDF_02275
+MSDVT-----------VRALRPEDHEAVAAL---TLASYTTGGHFEAESDYLETLADVAG
+RAAVAEVLVAELDGQVAGSLVLTPHGSPMAETSVPGEYEFRMLAVDPAVHRRGVATALLA
+EVVRRARATPGVEAIALSTMTSMTDAHRMYERLGFVRVPDRDWRLSDLEPGLDPAEDAGP
+FLVYRLPLT
+>SA211_MHAAABBN_00279
+MSAL------------VRPLRPEDHEAVAEL---TLASYVDGGHIAPDDAYVKTLMDVAD
+RAGRAEVLVAEVDGEVAGSVVLTPPGSPLAETSGDGEYEFRMLAVHPRFHRRGVGGALLA
+EIVARARAEEGVDAVVLTTMPSMTGAHRMYERAGFVRVPERDWFLADVVPDLDPADETGP
+FLVYRLALD
+>TT9_LFPAFLNI_00557
+MSAL------------VRPLRPEDHEAVAEL---TLASYVDGGHIAPDDAYVKTLMDVAD
+RAGRAEVLVAEVDGEVAGSVVLTPPGSPLAETSGDGEYEFRMLAVHPRFHRRGVGGALLA
+EIVARARAEEGVDAVVLTTMPSMTGAHRMYERAGFVRVPERDWFLADVVPDLDPADETGP
+FLVYRLALD
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000108.fa

@@ -0,0 +1,48 @@
+>AS2_ACLBLIBL_00786
+MDLPQITP------------------------------------------------------------------------
+-------------------------------------------------LAVAVGLAVAVVGWLLGRLLGAGVAWLFA--
+----RRGRSPSSARVFGKLVAAGITVLSLGAAVTVVFPSVKPV--DLLGGIGVISIAAGIAFQTVLGNMFAGMVILARDR
+FRVGDQIQVGEHAGNVVEMGLSSTAVKTFDGRLVLIPNQMLHSQAVTVQTGFSAVRS---SLRVDVETGNDLARTREIAV
+RAMSELPQVLRDPAPQALLASVGVTTVGMDLRFWSGARQMETKEAMDAVIHAVLTAFEKNGVATGDDV-RVVDAGP-ELR
+RILEGPGAPRGQG--------------GPDYPG------------------G----------------------------
+------LAGPGE---------------PDRAARP-------------------------GSD
+>AS2_ACLBLIBL_00939
+M----LLAALSGPASPPVLGSLARLF-AGENVPAGVEGNVQDGAAATTAALGVEWGTLLTVLVAFAVGATLVYAALQVTR
+VVLVRRPAFQHGAARLSLPAAVAAGLLASRIWLGVMAEEQTWYRPASFLLLIAVAAAGAWAAWRLVGVIEAGILGRYQET
+GVEHRRERRIRTQTILIRRILNAVIVVVAIAVVLLGVPEVRSLGAGLLASAGVISVIAGLAVQSTLTNVFAGFQLAFTDA
+IRVGDVVDMEGVFGTVEEITLSNVVLKLWDGRRMVYPSSHFTTQPFENWTRVGTEVSGVVELDVDWRVPMPALRERLTQL
+LDSTDLWDG-RESSMQVTDAIGGTVRI----RAVVSARNSGDLWDLRCLVREDLVTFLRSEHPEAIVVQRVVERHP----
+--AHDDAVPASEGSDAGARGGDPTGEPGPDGSGVAAR-EPRPRTAALPRVEGGEPRPDTVTTPLTRVDDHAGLYTGSITA
+VQRNRELHGPGEDAFAERRAQQAKQAAEAATADEAGRRSGAGSHADGLLDDAVTRRRQDDED
+>KBS0714_MOLHKGIG_01921
+M----VLPVLPALATPPLLTALDRLL-AGETVPSGVEGDIQDGAAATTRAFGVEWGTLLTVLMAFAIGAAVVYLALQVAR
+VVLVRRPAFQHGAARLSLPAAVAAGLLASRIWLGVMAEEQAWYRPASFLLLIAVAAAGAWAAWRLVGVIEAGILGRYQET
+GVEHRRERRIRTQTILIRRILNAVIVVVVVAVVLLGVPEVRSLGAGLLASAGVISVIAGLAVQSTLTNVFAGFQLAFTDA
+IRVGDVVDMEGVFGTVEEITLSNVVVKLWDGRRVVYPSSHFTTQPFENWTRVGTEVSGVVELDVDWRVPMDALRARLAQL
+LESTDLWDG-REHALQVTDATGGVVRI----RAVVSARNSGDLWDLRCLVREDLVAFLRHEHPEGIVVQRMVVRHP----
+--AHDDAAPASEGSDAGARGGDRTGEPGPDGSGVAAR-EPRPRTAPLPRVDGADPRPHTLTTPLTRVGDHSGLYTGSMTA
+VQRNRELAGPGEEAFAERRAQQAKQAAEAAAADEAGRRSGAGSHADGPLDDAVTRRRQDDED
+>KD337_NAFOICDF_00874
+MPVPALLPVLAQTASSDAALSDAVLSAADQVVPGSVEQDVQQGASAASAALGVEWATVAAVLGAFLAGGLVVLGVFLVAR
+LALFRRDRLKADAARLTVPVSLFAGFLTARVGLEVMAHGQPWFEAAAFVLLLAVAASAAWAAWRVVDVVESGILARYHQP
+GVNDRRERKIRTQTMLLRRVLNAVIVVVALAVVLLAIPQVRSLGAGLLASAGLISVIAGLAVQSTLTNVIAGFQLAFTDS
+IRVGDVVDMQGVFGTVEEITLSNVVVKLWDGRRMVYPSKHFTSEPFENWTRTGAAVAGVVEMDVDWRVPMDPLRARLTEL
+LESTDLWDG-RENAMQVIDAVGGMVRI----RAVVSAKNSGELWDLRCLVREDLVGFLRAEYPEGIYTQRLVERRPSDPA
+PEAHDDPAPDAHDDAAPAAA---PAAPAPSDRGSSTRAEPTPQTRPMPTVTG--------SVPLARAGENASLYTGSIRA
+VERNQEMDGPGEEAYAERRARAAER--EDRAARDAGR---GGAHA--------------ARS
+>SA211_MHAAABBN_01617
+M----VLPVLPALATPPLLTALDRLL-AGETVPSGVEGDIQDGAAATTRAFGVEWGTLLTVLMAFAIGAAVVYLALQVAR
+VVLVRRPAFQQGAARLSLPAAVAAGLLASRIWLGVMAEEQTWYRPASFLMLIAVAAAGAWAAWRLVGVIEKGILGRYQET
+SVEHRRERRIRTQTILIRRILNAVIVVVAVAVVLLGVPEVRSLGAGLLASAGVISVIAGLAVQSTLTNVFAGFQLAFTDA
+IRVGDVVDMEGVFGTVEEITLSNVVVKLWDGRRMVYPSSHFTTQPFENWTRVGTEVSGVVELDVDWRVPMDALRARLAQL
+LESTDLWDG-REHALQVTDATGGVVRI----RAVVSARNSGDLWDLRCLVREDLVAFLRHEHPEGIVVQRMVVRHP----
+--AHDDAAPASEGSDAGARGGDRTGEPGPDGSGVAAR-EPRPRTAPLPRVDGADPRPHTLTTPLTRVGDHSGLYTGSMTA
+VQRNRELAGPGEEAFAERRAQQAKQAAEAAAADEAGRRSGAGSHADGPLDDAVTRRRQDDED
+>TT9_LFPAFLNI_01841
+M----VLPVLPALATPPLLTALDRLL-AGETVPSGVEGDIQDGAAATTRAFGVEWGTLLTVLMAFAIGAAVVYLALQVAR
+VVLVRRPAFQHGAARLSLPAAVAAGLLASRIWLGVMAEEQAWYRPASFLLLIAVAAAGAWAAWRLVGVIEAGILGRYQET
+GVEHRRERRIRTQTILIRRILNAVIVVVVVAVVLLGVPEVRSLGAGLLASAGVISVIAGLAVQSTLTNVFAGFQLAFTDA
+IRVGDVVDMEGVFGTVEEITLSNVVLKLWDGRRMVYPSSHFTTRPFENWTRVGAEVSGVVELDVDWRVPMDALRARLTQL
+LESTDLWDG-REHALQVTDATGGIVRI----RAVVSARNSGDLWDLRCLVREDLVSFLRHEHPEGIVVQRMVVRHP----
+--AHGDASPASEGSDAEARGGDRTGEPGPDGSGVAAR-EPRPRTAPLPRVDGADPRPDTLTTPLTRVGDHSGLYTGSMTA
+VQRNRELAGPGEEAFAERRAQQAKQAAEAAAADEAGRRSGAGSHTDGLLDDAVTRRRQDDED

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000109.fa

@@ -0,0 +1,102 @@
+>AS2_ACLBLIBL_00789
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------MFDRAVSAPDEW
+QEPRANLVFDTVESVGAWERPTPR-SNPARTLTVTGRLEPGTEVRPRRNSQERFKLNALYEQPP--RGAELAPNAVRWQS
+RSPVDVTEVEEIAPGRFRVSLLQRLSAKYEPEPHAEVPMAVFHLNYVRPGGLLERIREQAAEAARRGRLP---------E
+GAVFDILARRAPRTTGRTLAAIGADVRDG------RRDGVGGLVEAVESARGSYVAVQGPPGTGKTYVGSRAVKELLDRG
+WTVGVTAQSHAVVENFLDQLIGVGVDPDRVGK-EPKDPDGLHR-WTSLG---SSEVHAFLAPGRVLGGTAWTFANAAAQP
+VDLLVVDEAGQLSLAHLLGASALAETVLLLGDPQQLPQVSRGEHPQPIGDAALTWIAE-GAPVLRADRGFFLDTSWRMHS
+ALTRAVSELSYAGRLGAREEVTDARRLDGVEPGLHPWPVSHTGNAVSSPEEAAAVVEIIQSLLGRTWSTGPDDPGRPLEP
+SDVIVVAPYNAQVATVREALDAAGLEGTAVGTVDKFQGREAAVAILTMAASSPQEVPRGLDFLLNRNRLNVSISRGQWAA
+YLVHSPALADALPTGPEDLPMIGAFLRLVHR
+>KBS0714_MOLHKGIG_02029
+MVTFAP-DRASFMLSPSDITVAATCTYGWLRGTVDPALGRAPRIGVADAFLERVSRLGDEHESRVLARLEAEHGADQVVR
+LARPERYTPEGVRAARERTAAALAARPAVVFQGMLHDGAFGGLADFLVLRTDEEHPEGAYEVVDTKLARHARVTALLQIA
+AYADLLDGMGVPRARQGSLWLGDGSRHVADLDEVIPVYRHQRSRLEALLQDHVAAGEPARWGDDRLSVCGACEVCEEAVA
+EHRDVLLTAGATRLQRTRLREAGITTIEQLAASVAPPEGMARRTWEALREQAAIQLEPAGAGGVPPHRIVDPRAVAGLPV
+PDAGDVFFDFEGDPLWVSADGSMEGLEYLWGWVE-APGGDTARTASADFRFTGLWADTR-AAERAV--------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---------------------------------------------------------------------------KPL--
+--VVV---------------------------------------------------------------------------
+-------------------------------
+>KBS0714_MOLHKGIG_02031
+M-------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+----------------------------------------AASTSETTCPTTGRYTTMRDSTERAALEEFVAFVEARRAA
+HPGMRIYHYAAYEVTALKRLTVRHGVGERELDDWLRAGLFVDLYSTVRAALRAGVPSYSIKKLEPLYMGAEHRAEDGVTT
+AADSVTEYHRYVAAME---AGDTEVARA---IRADIEDYNRYDCVSTARLRDWLLEQVGRTAEHGATAPRPDDD-----E
+HLVEPAPALEGEDARLEADLLGLLPTADD-------ADAVLDDEQRGVALLAAGLGFYQREDKPVWWAFFDRGISPPDEW
+QDARANVVADRVDVAEDWHRPKGA-RTFQRVLRMTGTLEPGSSLQPGAEAI------TVYEDVPADRRDLLQPNAVRWVG
+AKAV-VEDVEDRPDGSSVVLLREKIPTQ-DVEQHSELPMAAFAHTVVNTDKLKERLRERARTAVQAGGLPGSGGDAAAPS
+TAAFDILARRPPATAGRPLAAISTELREGDSAPAPARQGWEALVEALESARGSYVAVQGPPGTGKTHVGSHAVKALLERG
+WSVGVTAQSHAVVENFLGKLVSIGVPKKQVLKAEKRGKDAPERPWATVS---DAKPYIGL-PGHVVGGTAWTFAHEDVQE
+FDLLVIDEAGQFSLAHTLAAAAMARTVLLLGDPQQLPQVTKGTHPQPIGEAALSWLAA-DEPVLRADRGFFLDTSWRMHS
+ALTEAVSTLSYAGELGAKEDVTDARRLDGVEPGLHPWPVSHTGNAVSSPEEAAAVVEIVRSLLGRTWSTGPDDPGRPLEP
+SDVIVVAPYNAQVATVREALDAAGLEGTTVGTVDKFQGREAAVAILTMAASSPQEVPRGLDFLLNRNRLNVSISRGQWAA
+YLVHSPALADALPTRPEDLPMIGAFLRLVHR
+>KD337_NAFOICDF_00750
+MASFSPVDPASFLLSPSDITAAATCEYGWLRGAVDPKLGRADGAPEDDAFLARVSALGDAHEARTLDALVAEHGAGGVVV
+LERPSPYTPEGIAAAAERTRQALASGAAVVFQAMLHDGSFGGLADFLVREPTAEHPEGAYQVVDTKLARHARVTALLQIA
+AYADLLDGMGVPRTRHGSLWLGDGARHTVDLAEVIPVYRHQRARLERVLRTHVTEGTPVAWGDERHAVCGQCRWCEEAIA
+EHRDVLLTAGATRVQRTRLRAAGVRTVEELAASTAPPEGMSRRTWEALRDQAAAQLEPAGADGVPPHRIVDPAPVRALPA
+PDAGDLFFDFEGDPLWVSPRGDMEGLEYLWGWVEAAPGRTTEGTGFDQFRFTGLWADTR-AEEKAALEEFVRFVEARRAV
+HPGMRIYHYAAYEVTALKRLTVRHGVGEAELDDWLRAGLFVDLYATVRASLRAGVPSYSIKKLEPLYMGADHRAEDGVTT
+AADSVTEYHAYAEQAERAGEGDADAAAEAARLRAGIEDYNRYDCVSTARLRDWLLGQVGGAST--GVAVDAGEP-----A
+EAGEDAPAATDEDAALEQALLDLVP-ADP-------ADG--DDETLGLAMLAAGLGFFRREAKPMWWAFFDRGISPVDEW
+QDPRANVVADRVDVAEDWHRPSSRARTRQRVLRVTGRLEAGTQLTPGAEAK------TVYEDVPAGRVEGLQPNAVRWVG
+AAAV-VEDVEDHPDGTSTLRLREKVAL--DAEPHPELPMAAFAHTVIPSATLQERIREDGLRARALGALPRP--EEGAAP
+TAAFDILARRVPETAGRPLAQITADARAG------RLEGADALVEALVSARGSYVAVQGPPGTGKTHVGSHAVKELASRG
+WRIGVTGQSHAVVENFLAKLVAVGVPAGHVGKEKPRGGEDRERPWTVLDDRGDAFEHLSQ-PGHVLGGTAWTFAHPKAPD
+LDLLVIDEAGQFSLAMTLAAAATARTVLLLGDPQQLPQVSQGTHPQPIGDAALGWLMEPGEEVLPPERGFFLDTTWRMHS
+ALTAPVSRLSYDGQLRSRSEATDARHLEGIVPGLHPVPVEHTGNAVSSTEEARRVVEIIEDLVGRAWTPGSGEEPRPLTP
+EDVIVVAPYNAQVATVRAALDDAGLQGTTVGTVDRFQGREAAVAILTMAASSAQDVPRGLDFLLNRNRLNVSLSRGQWAA
+YLVHSPALADALPTTPADLPLIGAFLRLLQP
+>SA211_MHAAABBN_01738
+MVTFAP-DRASFMLSPSDITAAATCTYGWLRGTVDPALGRAPRIGVADAFLERVSRLGDEHESRVLARLEAEHGADQVVR
+LTRPERYTPEGVQAARERTAAALAARPAVVFQGMLHDGAFGGLADFLVLRTDEEHPEGAYEVVDTKLARHARVTALLQIA
+AYADLLDGMGVPRARQGSLWLGDGSRHVADLDEVIPVYRHQRARLEALLQDHVAAGEPTRWGDDRLSVCGACEACEEAVA
+EHRDVLLTAGATRLQRTRLREAGITTIEQLAVSVAPPEGMARRTWEALREQAAIQLEPAGADGLPPHRIVDPRAVTGLPA
+PDAGDVFFDFEGDPLWVSADGSMEGLEYLWGWVE-APGGDTARTASADFRFTGLWADTR-AAERAALEQFVAFVEARRAT
+HPGMRIYHYAAYEVTALKRLTVRHGVGERELDDWLRAGLFVDLYSTVRAALRAGVPSYSIKKLEPLYMGAEHRAEDGVTT
+AADSVTEYHRYVAAME---AGDTEVAKA---IRADIEDYNRYDCVSTARLRDWLLEQVGRTAEHGATAPRPDDD-----E
+HLVEPAPALEGEDARLEADLLGLLPTADD-------ADAVLDDEQRGVALLAAGLGFYQREDKPVWWAFFDRGISPPDEW
+QDARANVVADRVDVAEDWHRPKGA-RTFQRVLRMTGTLEPGSSLQPGAEAI------TVYEDVPADRRDLLQPNAVRWVG
+AKAV-VEDVEDRPDGSSVVLLREKIPTQ-DVEQHSELPMAAFAHTVVNTDKLKERLRERARTAVQAGGLPGSGGDAAAPS
+TAAFDILARRPPATAGRPLAAISTELREGDSAPAPARQGWEALVEALESARGSYVAVQGPPGTGKTHVGSHAVKALLERG
+WSVGVTAQSHAVVENFLGKLVSIGVPKKQVLKAEKRGKDAPERPWATVS---DAKPYIGL-PGHVVGGTAWTFAHEDVQE
+FDLLVIDEAGQFSLAHTLAAAAMARTVLLLGDPQQLPQVTKGTHPQPIGEAALSWLAA-DEPVLRADRGFFLDTSWRMHS
+ALTEAVSTLSYAGELGAKEDVTDARRLDGVEPGLHPWPVSHTGNAVSSPEEAAAVVEIVRSLLGRTWSTGPDDPGRPLEP
+SDVIVVAPYNAQVATVREALDAAGLEGTTVGTVDKFQGREAAVAILTMAASSPQEVPRGLDFLLNRNRLNVSISRGQWAA
+YLVHSPALADALPTRPEDLPMIGAFLRLVHR
+>TT9_LFPAFLNI_01966
+MVTFAP-DRASFMLSPSDITAAATCTYGWLRGTVDPALGRAPRIGVADAFLERVSRLGDEHESRVLARLEAEHGADQVVR
+LARPERYTPEGVRAARERTAAALAARPAVVFQGMLHDGAFGGLADFLVLRTDEEHPEGAYEVVDTKLARHARVTALLQIA
+AYADLLDGMGVPRARQGSLWLGDGSRHVADLDEVIPVYRHQRARLEALLQDHVAAGEPARWGDDRLSVCGACEACEEAVA
+EHRDVLLTAGATRLQRTRLREAGIMTIEQLAASVAPPEGMARRTWEALREQAAIQLEPAGADGLPPHRIVDPRAVAGLPV
+PDAGDVFFDFEGDPLWVSADGSMEGLEYLWGWVE-APGGDTARTASADFRFTGLWADTR-AAERAALERFVAFVEARRAA
+HPGMRIYHYAAYEVTALKRLTVRHGVGERELDDWLRAGLFVDLYSTVRAALRAGVPSYSIKKLEPLYMGVEHRAEDGVTT
+AADSVTEYHRYVAALE---AGDTEVARA---IRADIEDYNRYDCVSTARLRDWLLAQV--EPEEAAVADRPVDDAATGNE
+PLVEAAPSLQEQDAALAASLQALADVERDEAGGTGAPEAELDGGRRGIALLAAGLGYFARENKPLWWAMFDRAVSAPDEW
+QEPRANLVFDTVESVGAWERPTPR-SNPARTLTVTGRLEPGTEVRPRRNSQERFKLNALYERPP--RWAELAPNAVRWQS
+RSPVDVTEVEEIAPGRFRVSLLQRLSTKHEPEPHGEVPMAVFHLNYVRPGGLLERIREQAAEAARRGRLP---------D
+GAVFDILARRAPRTTGRTLAAIGADVRDG------RRDGVGGLVEAVESARGSYVAVQGPPGTGKTYVGSRAVKELLDRG
+WTVGVTAQSHAVVENFLDQLIGVGVDPDRVGK-EPKDPDGPHR-WTSLG---SSEVHAFLAPGRVLGGTAWTFANAAAQP
+VDLLVVDEAGQLSLAHLLGASALAETVLLLGDPQQLPQVSRGEHPQPIGDAALTWIAE-GAPVLRPDRGFFLDTSWRMHS
+ALCAPVSELSYAGELGAKEDVTDARRLDGVEPGLHPWPVSHTGNAVSSPEEAAAVVEIVRSLLGRTWSTGPDDPGRPLEP
+SDVIVVAPYNAQVATVREALDAAGLEGTTVGTVDKFQGREAAVAILTMAASSPQEVPRGLDFLLNRNRLNVSISRGQWAA
+YLVHSPALADALPTRPEDLPMIGAFLRLVHR

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000112.fa

@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00872
+MSA--LLVGVFALQGDVREHVRVLEGLGARTRPVRRAADLTGLDGIVLPGGESSVMDRLA
+GLMGLKEPLADAIGAGLPAYGTCAGIILLAREIQNPAPGQGSLGVLDVTVRRNAFGAQVD
+SFEADLEVPAVSAEPVHAVFIRAPAVLRAGGEVEVLASVPASRLSAAPPELGLDDA----
+AQVPVAVRQGRVLATSFHPEVTGDHSFHREFLRGL--------
+>KBS0714_MOLHKGIG_01985
+MSP-QKTVGVLALQGDVREHVHVLESLGARTRPVRRPADLEGLDGIVLPGGESSVMDRLA
+RIMGMRDPLIAALRDGLPAYGTCAGLIMLAREIRNPAPDQGGLGVLDVAVRRNAFGAQVD
+SFEEDLDIPAVAAEPVHAVFIRAPAVLQAGEGVEVLASVPASRLSVPAADPGLDGD----
+ARLPVAVRQGHLLATAFHPEVTGDWSFHRAFLAGL--------
+>KD337_NAFOICDF_00808
+MSP-QKTVGVFALQGDVREHVHVLESLGARTRPVRRPADLEGLDGIVLPGGESSVMDRLA
+RIMGLKDPLIAALRDGLPAYGTCAGLIMLAREIRNPAPDQGGLGVLDVAVRRNAFGAQVD
+SFEEDLDVPAVAAEPVHAVFIRAPAVVQAGEGVEVLASVPASRLSLPAADPGLDGD----
+ARLPVAVRQGHLLATAFHPEVTGDWSFHRAFLAGL--------
+>KD337_NAFOICDF_00818
+MRAVQKTVGVFALQGDVREHVHVLEALGARTRPVRRPADLAGLDGIVLPGEESSVMDRLA
+RIMGLRDPLAEAVRAGLPVYGTCAGMILLAAGIENPAPGQGSLGVLDVTVRRNAFGSQAD
+SLEADLQVPAVSADPMHAVLIRAPAVVRVGEGVEVLASVPAARAVAASSSTAETDDGAPA
+ADLPVAVRAGNVSATSFHPEVTGDWSFHRAFLAGL--------
+>SA211_MHAAABBN_01679
+MSP-QKTVGVFALQGDVREHVHVLEALGARTRPVRRPADLEGLDGIVLPGGESSVMDRLA
+RIMGLKDPLIAALRDGLPAYGTCAGLIMLAREIRNPAPDQGGLGVLDVAVRRNAFGAQVD
+SFEEDLDIPAVAAEPVHAVFIRAPAVLQAGEGVEVLASVPTSRLSVPAADPGLDGD----
+ARLPVAVRQGHLLATAFHPEVTGDWSFHRAFLAGLRPPRAPRR
+>TT9_LFPAFLNI_01911
+MSP-QKTVGVFALQGDVREHVHVLEALGARTRPVRRPADLEGLDGIVLPGGESSVMDRLA
+RIMGLKDPLIAALRDGLPAYGTCAGLIMLAREIRNPAPDQGGLGVLDVAVRRNAFGAQVD
+SFEEDLDVPAVAAEPVHAVFIRAPAVLQAGEGVEVLASVPASRLSVPAADPGLDGD----
+ARLPVAVRQGHLLATAFHPEVTGDWSFHRAFLAGL--------
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000120.fa

@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01086
+MDAP----ASDLTGKARIRHAALRLFAHHGVEGTSMRAIAEEASVTVGLITHHYGSKAGL
+HREVDAAVADDFAAAIASVPAEGTARDVTLRRDAAVAEMLRARPDVLEYVRRHVLLGEPA
+ADSQLVEKLTALAREQVRQLRAAGLISGRRDEVPQVVSMIMRMLGELFFEPLVDRI----
+---VDAVDRDAARPAVVVRVQAAEDETARGGRA
+>KBS0714_MOLHKGIG_01790
+MDAP----ASDLTGKARIRHAALRLFAHHGVEGTSMRAIAEEASVTVGLITHHYGSKAGL
+HREVDAAVADDFAAAIASVPAEGTARDVTLRRDAAVAEMLRARPDVLEYVRRHVLLGEPA
+ADSQLVEKLTALAREQVRQLRAAGLISGRRDEVPQVVSMIMRMLGELFFEPLVDRI----
+---VDAVDRDAARPAVVVRVQAAEDETARGGRA
+>KBS0714_MOLHKGIG_02051
+MNTPLPFDQDDLSSPARLRLAALELYAERGVEMASVREIAQRAGVAPGLVRHHFGSKAGL
+TRAVDDDVLRLIAATLDEVPLVGTPQEVSAARDAAFADLLADHPVVGAYVRRSLLEAGGE
+TES-LLERLVDLTTEQTERLRRSGF-APRRSMPTSVFGTVIRQMGHLMVDPSADRIWRRI
+AETQEGAAEQAS-PRVRLVVDPP-----R----
+>KD337_NAFOICDF_00729
+MNTARPLTREDLSSAARLRLSALELYAERGEHAASIRDVGRHAGVAPGLVRHHFGSKDGL
+TRAVDDDIIDLVRATLEAVPLEGTPLEISAARDAAFQELLQERPLIGGYLAQALTASRAS
+GES-VLDRLVDLSAEQTRQLIDRGL-DPRRGLRTSVFTTVVRQVAVFLVAPVAERAWNRL
+GHTLEGASDVAPMPPVRVVVGPAPEEDRR----
+>SA211_MHAAABBN_01757
+MNTPLPFDQDDLSSPARLRLAALELYAERGVEMASVREIAQRAGVAPGLVRHHFGSKAGL
+TRAVDDDVLRLIAATLDEVPLVGTPQEVSAARDAAFADLLADHPVVGAYVRRSLLEAGGG
+TES-LLERLVDLTTEQTERLRRSGF-APRRSMPTSVFGTVIRQMGHLMVDPSADRIWRRI
+AETQEAAAEQRS-PRVRLVVDPP-----R----
+>TT9_LFPAFLNI_01985
+MNTPLPFDQDDLSSPARLRLAALELYAERGVEMASVREIAQRAGVAPGLVRHHFGSKAGL
+TRAVDDDVLRLIAATLDEVPLVGTPQVVSAARDAAFADLLADHPVVGAYVRRSLLEAGGE
+TES-LLERLVDLTTEQTERLRRSGF-APRRSMPTSVFGTVIRQMGHLLVDPSADRIWRRI
+AETQEDAAEQAS-PRVRLVVDPP-----R----
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000124.fa

@@ -0,0 +1,55 @@
+>AS2_ACLBLIBL_01218
+MTRRLLLFANSFPYGKQEPYLMRECHYLDAFDEVYIFSLSIRKHQRDHRRDLPLERVTVV
+PIPFKSPLFYAAVSPRALVSRAFVTELRQLLRDRRFTVARAVQALSQFSRAEHEASVIG-
+-----------RFLRD---NITPSPSDETVFYAYRFLYQPYLMSRLAAKFSSSRLIGRAH
+GI---DLFEERQSTDYLPGRA--INLGALDELHSVSRAGAEYLR----ARHPEFVEKIKV
+SYLGTEDHGVRPPRSSSQVLRLVSCSEVAPVKRLELLVEALREVSD-SIQVEWSHYGEGP
+DMDRVRAMASTLPGHVSATFHGWTRNDEILEAYRSGRHDVFINVSSSEGLPVSIMESSSC
+GLPTIATDVGGTGEIVSDGVNGRLISANPMPREIAAAVEEFARMAP--------EAFARR
+SAAA-RETWSTHFDSDRNYRQFVAKMLS
+>AS2_ACLBLIBL_02441
+M--------------------------------------------------TP-EAATTT
+PAPLT--LWVVPVADLGGVARHVLDVAAHGLPGLRLVVLCPEGALAERLREQGAAVFTGD
+VGPDAGLAASVRTLRTAVRTLRPAAVHTHLAYADLAAFTAFGPGRARRRAGAPALVSTEH
+GIAPDDGLYNRAAAARVKNAAHRARLRGTDLVIAVAQSTADVLRRKWGTGAPITVVRNGV
+DVSAVRAAAAGQRRAPGEGLRILSLSRLAPEKNLDRLIAALPALLERDPGTRLTLAGVGP
+LEGQLRAQAEALGVADAVDLPGFVEPWGAM-----AEHDVLVQLSAWENLSYTLLDAAAA
+GLPAVATDVGGNGEILPP---ERLVHET-TPAAIADAVMRATVEGPGEVRVGDVETMARA
+TAEATLEVLGRRAGKTSG----------
+>KBS0714_MOLHKGIG_00509
+M--------------------------------------------------IP-EAARTT
+PAPLT--LWVVPVADLGGVARHVLDVARVGLPGLRLAVLCPEGPLAERLREQGAAVFTGD
+VGPDAGLAASVRTLRTAVRTLRPAAVHTHLAYADLAAFAALGPGRARQRAGAPALLSTEH
+GIAPDDGLYNRAAAARVKNAAHRARLRGTDLVIAVAQSTADVLRRKWGAGAPITVVRNGV
+DVPAVRAAAAGQRRTPGEGLRILSLSRLAPEKNLDRLIAALPALLERDPGTRLTLAGAGP
+LEGELRAQAEALGVAEAVDLPGFVEPWETM-----AEHDVLVQLSAWENLSYTLLDAAAA
+GLPAVATDVGGNGEILPP---ERLVHET-TPAAIADAVVRAAADGPGEVRVGDVETMARA
+TAEATLEVLGRRVGKVGT-R--------
+>KD337_NAFOICDF_02325
+M--------------------------------------------------IP-EAATTT
+PAPLT--LWVVPVADLGGVARHVLDVARVGLPGLRLAVLCPEGPLAERLREQGAAVFTGD
+VGPDAGLAASVRTLRTAVRTLRPAAVHTHLAYADLAAFTALGPGRARRRAGAPALLSTEH
+GIAPDDGLYNRAAAARVKNAAHRARLRGTDLVIAVAQSTADVLRRKWGAGAPLTVVRNGV
+DVSAVRAAAAGQRRAPGEGLRILSLSRLAPEKGLDRLIAALPALRERDPGTRLTLAGSGP
+LEGQLRAQAEDLGVADAVDLPGFVEPWETM-----AEHDVLVQLSAWENLSYTLLDAAAA
+GLPAVATDVGGNGEILPP---ERLVHET-TPAAIADAVTRAAAEGPGEVRVDDVEGMAEA
+TARAERDVVETQDARRRKTR--------
+>SA211_MHAAABBN_00229
+M--------------------------------------------------IP-EDATTT
+PAPLT--LWVVPVADLGGVARHVLDVARVGLPGLRLAVLCPEGPLAERLREQGAAVFTGD
+VGPDAGLAASVRTLRTAVRTLCPAAVHTHLAYADLAAFTALGAGRALRRAGAPALLSTEH
+GIAPDDGLYNRAAAARVKNAAHRARLRGTDLVIAVAQSTADVLRRKWGAGAPLTVVRNGV
+DVPAVRAAAAGRRRAPGEGLRILSLSRLAPEKNLDRLIAALPALLERDPGTRVTLAGSGP
+LEGQLRAQAEDLGVADAVHLPGFVEPWGTM-----AEHDVLVQLSAWENLSYTLLDAAAA
+GLPAVATDVGGNGEILPP---ERLVRET-TPEAIADAVVRAAAEGPGEVRVGDVETMARA
+TAEATLEVLGRRVGKGGH-R--------
+>TT9_LFPAFLNI_00508
+M--------------------------------------------------IP-EAARTA
+LAPLT--LWVVPVADLGGVARHVLDVARVGLPGLRLAVLCPEGPLAERLREQGAAVFTGD
+VGPDAGLAASVRTLRTAVRTLRPAAVHTHLAYADLAAFAALGPGRARRRTSAPALLSTEH
+GIAPDDGLYNRAAAARVKNAAHRARLRGTDLVIAVAQSTADVLRRKWGAGAPITVVRNGV
+DVPAVRAAAAGQRRTPGEGLRILSLSRLAPEKNLDRLIAALPALLERDPGTRLTLAGSGP
+LEGQLRAQAEALGVAEAVDLPGFVEPWETM-----AEHDVLAQLSAWENLSYTLLDAAAA
+GLPAVATDVGGNGEILPP---ERLVRET-TPAAIADAVVRAAADGPGEVLVGDVETMARA
+TAEATLEVLGRRVGKAGT-R--------
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000127.fa

@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01252
+MIP------VLLIEDEERIAAFVTKGMAAEGIAVTTAGTGAEGVGLAMTGAFELVILDLG
+LPDADGFDVLARIRRQDAHLPVIILTARSSAQDTVEGLTSGADDYMPKPFRFAELLARVR
+LRLRPGAPA-PEPTDTVMRHGDLELDPASHTARVDGRTVALSAREFALAEEFLRSPGQVL
+SREQLLDGAWGEDFESGSNVVDVYVRYLRAKI---GAERIL-TVRGLGYRLAGEDELSG
+>AS2_ACLBLIBL_02602
+MQSQNPEARLLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVM
+LPDMDGFTVTRRLRAAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIR
+AVLRRTASL-DDDA-AVLRVGDLELDDDAHEVRRGGEVVELSPTEFKLLRYLMMNPNRVL
+SKAQILDHVWEYDFNGDASIVESYISYLRRKIDVGGREKMIHTKRGVGYMLRAADKR--
+>KBS0714_MOLHKGIG_00359
+MQPQNPEARLLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVM
+LPDMDGFTVTRRLRAAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIR
+AVLRRTASL-DDDA-AVLRVDDLELDDDAHEVRRGGEVVELSPTEFKLLRYLMMNPNRVL
+SKAQILDHVWEYDFNGDASIVESYISYLRRKIDVGGREKMIHTKRGVGYMLRTADKR--
+>KD337_NAFOICDF_02461
+MQSQTPEARLLVVDDEPNIRELLSTSLRFAGFEVRAAGNGREALEAAEEFQPDLAVLDVM
+LPDMDGFTVTRRLRAAGRLFPVVFLTARDGTEDKVTGLTVGGDDYVTKPFSLDEVVARIR
+AVLRRTAPL-DDDS-AVLRVDDLELDDDAHEVRRGGEVVDLSPTEFKLLRYLMMNPNRVL
+SKAQILDHVWEYDFNGDASIVESYISYLRRKIDVGGRDKMIHTKRGVGYMFRTADKR--
+>SA211_MHAAABBN_00075
+MQPQNPEARLLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVM
+LPDMDGFTVTRRLRSAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIR
+AVLRRTASL-DDDA-AVLRVDDLELDDDAHEVRRGGEVVDLSPTEFKLLRYLMMNPNRVL
+SKAQILDHVWEYDFNGDASIVESYISYLRRKIDVGGREKMIHTKRGVGYMLRTADKR--
+>TT9_LFPAFLNI_00366
+MQPQNPEARLLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVM
+LPDMDGFTVTRRLRSAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIR
+AVLRRTASLDDDDA-AVLRVDDLELDDDAHEVRRGGEVVELSPTEFKLLRYLMMNPNRVL
+SKAQILDHVWEYDFNGDASIVESYISYLRRKIDVGGREKMIHTKRGVGYMLRTADKR--
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000129.fa

@@ -0,0 +1,60 @@
+>AS2_ACLBLIBL_01273
+-----------------MALT-IGFVGLPNVGKSTLFNALTRQTVLAANYPFATIEPNVGVVNLPDERLPQLAEIFGSER
+ILPATVSFVDIAGIVKGASEGEGLGNQFLANIREAHAIAQVVRAFDDGDVVHVDGKVDPASDMETINTELIIADMQTVEK
+AIPRVEKEVKGKKKEPADLEALKAALAVLERGETIFAAKDKDKLDMDRLRELSLLTAKPFIYVFNSDEGVLGDEAKQQEL
+RDLVA-------------PADAVFLDAKLESDLVELSEEEAAEMLEMAGQNESGLDQLARVGFSTLGLQTYLTAGPKETR
+AWTIPVGATAPE--------AAGVIHTDFQRGFIKAEIVS------------------FEDLIAAGSMADA-----KAAG
+KVRMEGKDYV----------------------------------------------------------------------
+--------------------------------------------------------------------------------
+----------MKD-----------------GDVVE---------FRFNV-------------------------------
+------------------------------------------------------------------------------
+>KBS0714_MOLHKGIG_01624
+MRDASA-AAGPPVDCRTVALT-IGFVGLPNVGKSTLFNALTRQTVLAANYPFATIEPNVGVVNLPDERLPQLAEIFGSER
+ILPATVSFVDIAGIVKGASEGEGLGNQFLANIREAHAIAQVVRAFDDGDVVHVDGKVDPASDMETINTELIIADMQTVEK
+AIPRVEKEVKGKKKEPADLEALKAALAVLERGETIFAAKDKDKLDMDRLRELSLLTAKPFIYVFNSDEGVLGDEAKQQEL
+RDLVA-------------PADAVFLDAKLESDLVELSEEEAAEMLEMAGQDESGLDQLARVGFSTLGLQTYLTAGPKETR
+AWTIPVGATAPE--------AAGVIHTDFQRGFIKAEIVS------------------FDDLIAAGSMADA-----KAAG
+KVRMEGKDYV----------------------------------------------------------------------
+--------------------------------------------------------------------------------
+----------MKD-----------------GDVVE---------FRFNV-------------------------------
+------------------------------------------------------------------------------
+>KD337_NAFOICDF_00781
+MSHAHHHGGGSSAAVLDSSLTRLGLVGSPNSGKSTLFNALTGLRVKTGNYPGVTVSRAEGVMVAEDGTRVVLEDLPGTYS
+LDPIS----------------------------------------PDEQVVADLLALDPA-DADHPQALLLVADATTLRR
+GLTMVAHALAVE---------LPATLVLTFGDELALRGGSVDVTRLSRALGIPVLAATA------------GDARQREAV
+RAHLATDPAGWAVPPVAPPTDPAGIAAWIDSVL----EAARYAVPRPDGRTRRIDDVLLHPVWGTLVFLVTMFAFFQVIF
+TVAAPLQALVEELFGWLGERAAALIPIEWLGRFVAEALIGGVGGVVVFLPQILLLFLMISLLESTGYMTRAAFLMDRVMS
+RFGLEGRSFVALLSSLACAVPGIMATRSLPSARDRLATMMAAPSMTCSARLPVYVLLISLLVPSEVRWGPVGLQGLVMFA
+LYLGGATASMLTAAFWSRVVGRRQAAMPFYMEMPPYRLPKARTVVTSMWASAEGFLRKVTSIILVTTALLWVLLNVPVRS
+EEEMAGAGVAMDDPAAVAQYTIDHSAAAAVGKAVEPAFEPLGFDWRIDVGVLASLAAREVFVATLGQMAAAEDPEDPGDA
+LASWTVTDDAGVERPLFTPDVVAALLVFFMLALQCMSTLAVMRRETGTWRWPLLAFGYYFTLAWLAAFAVRHVVLALT
+>KD337_NAFOICDF_01182
+-----------------MALT-IGFVGLPNVGKSTLFNALTRQTVLAANYPFATIEPNVGVVNLPDERLPQLAEIFGSER
+ILPATVSFVDIAGIVKGASEGEGLGNQFLANIREAHAIAQVVRAFDDGDVVHVDGKVDPASDMETINTELIIADMQTVEK
+AIPRVEKEVKGKKKEPADLEALKAALAVLERGETIFAAKDKDKLDMDRLRELSLLTAKPFIYVFNSDEGVLGDEAKQQEL
+RDLVA-------------PADAVFLDAKLESDLVELSEEEAAEMLEMAGQDESGLDQLARVGFSTLGLQTYLTAGPKETR
+AWTIPVGATAPE--------AAGVIHTDFQRGFIKAEIVS------------------FDDLIAAGSMNDA-----KAAG
+KVRMEGKDYV----------------------------------------------------------------------
+--------------------------------------------------------------------------------
+----------MKD-----------------GDVVE---------FRFNV-------------------------------
+------------------------------------------------------------------------------
+>SA211_MHAAABBN_01330
+MRDASA-AAGPPVDCRTVALT-IGFVGLPNVGKSTLFNALTRQTVLAANYPFATIEPNVGVVNLPDERLPQLAEIFGSER
+ILPATVSFVDIAGIVKGASEGEGLGNQFLANIREAHAIAQVVRAFDDGDVVHVDGKVDPASDMETINTELIIADMQTVEK
+AIPRVEKEVKGKKKEPADLEALQAALAVLERGETIFAAKDKDKLDMDRLRELSLLTAKPFIYVFNSDEGVLGDEAKQQEL
+RDLVA-------------PADAVFLDAKLESDLVELSEEEAAEMLEMAGQDESGLDQLARVGFSTLGLQTYLTAGPKETR
+AWTIPVGATAPE--------AAGVIHTDFQRGFIKAEIVS------------------FEDLIAAGSMADA-----KAAG
+KVRMEGKDYV----------------------------------------------------------------------
+--------------------------------------------------------------------------------
+----------MKD-----------------GDVVE---------FRFNV-------------------------------
+------------------------------------------------------------------------------
+>TT9_LFPAFLNI_01551
+--------MGPPVDCRTVALT-IGFVGLPNVGKSTLFNALTRQTVLAANYPFATIEPNVGVVNLPDERLPRLAEIFGSER
+ILPATVSFVDIAGIVKGASEGEGLGNQFLANIREAHAIAQVVRVFDDGDVVHVDGKVDPASDMETINTELIIADMQTVEK
+AIPRVEKEVKGKKKEPADLEALQAALAVLERGETIFAAKDKDTLDMDRLRELSLLTAKPFIYVFNSDEGVLGDEAKQQEL
+RDLVA-------------PADAVFLDAKLESDLVELSEEEAAEMLEMAGQDESGMDQLARVGFSTLGLQTYLTAGPKETR
+AWTIPVGATAPE--------AAGVIHTDFQRGFIKAEIVS------------------FDDLIAAGSMNDA-----KAAG
+KVRMEGKDYV----------------------------------------------------------------------
+--------------------------------------------------------------------------------
+----------MKD-----------------GDVVE---------FRFNV-------------------------------
+------------------------------------------------------------------------------

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000143.fa

@@ -0,0 +1,120 @@
+>AS2_ACLBLIBL_01524
+M-------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---------------------------SSTRRDPL---VGGIVDGRYEVLARLARGGMSTVYLALDTRLDREVALKVMHP
+HLAEDPVLVGRFEQEAKTAARLS-HPHVVAVLDQGHTEDASGEVLAYLVMEHVPGHTLRTVIREQAPLTPREALRHLRPL
+VDGLAAAHRAGLVHRDAKPENV-LVRTDG---RITVADFGLSRAATAHTSAGQAVVGTPAYLAP--EHIAGAPADARSDV
+YAAGIILFELLTGRQPFTAGTALQVAYRHVHERVPVPSSL-QPGLPEALDDLVLWCTEPDPADR------PADAGEVLDR
+LDAVAAEL--------GP-AELDRPPV--LVPDAVEGRPGPEHDETTTLDALDRLDPKDPLDDADGD-ETTSLDAGDHHA
+TRVLPSLP-ADALPTE---------------------------------------ALAAD------DVVRRSPARRRRR-
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-------------------------------------------------------------------------------P
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-----------------------------------------------------------------------
+>KBS0714_MOLHKGIG_01369
+M-------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---------------------------SSARRDPL---VGGIVDGRYRVVERLARGGMSTVYLAVDERLDRQVALKVMHP
+HLAEDPVLVGRFEQEAKTTARLS-HPHVVAVLDQGHTEAEDGDVLAYLVMEHVPGRTLRTVIRDRAPLSPREALRFLRPL
+VDGLAAAHGAGLVHRDVKPENV-LVRDDG---RVTVADFGLSRAATAHTMAGQAVVGTPAYLAP--EHIAGAPADARSDV
+YAVGIILFELLTGRQPYTAATALQVAYRHVHERVPVPSTL-HPGLPEDLDDLVLWCTEPDPADR------PAGAGELLHR
+IEAVAAGL--------DP-DAPDRRPA--AQP-----AEGPGADPAPAGPAADGLEDAAP----DGNLETRALDAGDHHA
+TRVLPALA-ESDLDEDMTDVIDTRVATHGGDPRPAA-------RPAEPIGPLGLDPAPAD------RHPGRGSRRRLRRA
+ARRPALDLGQGTGRAAAIGAAVTLLLTGVALLLGWTLGSGGLGVGGVAVVPDLDGLAREA----AEERLTAAGFTAAVTA
+RHDELRTEGTVVASSPAAGEPAGRGAPVELTVS-------AGPAPVP-------VPDLTGVVIRQAHGVARDARFTVEVA
+ERRTDPAVPAGA-------VIEQHPAPGEQATPGTA------VRVVLSEGRAVRPVPDMTGQDPETAHTTLADEGWDARV
+HRLP-LPLSARGESRVLHQSPAAGTAL----------------------------------------------------P
+EGT-----------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-------------AVHVWV---------------------------------------------------G
+>KBS0714_MOLHKGIG_01953
+MSLPDARWHVVSPSPFEHEQQGLDILREVLPDESPFQVWTNFEFPDEDGQWHEVDALVLARTKFILVELKYYSGVLRGTG
+LRWERPGHSPQRSPLALAKKKAERFRSLLERTIESKMPGAGRQRIVPYVDYAVFLHHDRFRNEMAPQDSGRLFGLPHNET
+ASNLPSIEHLVLAPATDRFPLIGEPREQVLVALMEHLNLADARQPEVGSWLLEERLGEPTPDGQDWLASHRFQERHFARI
+RFQQPREGAPSSDLARVREAARREFDLTRALHHEGLLTASDRVDNELGVGLVFPYDESLAPLPLWLESRAATLSQQNRLD
+LLRQLAETLEYVHSNGIVHRALSPEALWVKTPKQGEPRILVADWQLAGVADRDKVDHAASLTQLSTQFGTTVRSTEELAP
+TSGALFRAPEDARRVSSLGRYKLDVFSVGALAAYLLTGAPAANTVAELHEHLATHQGLDVSVALPSVPEPVRQAILHATD
+PRPTARTATLNDFLAGLTEAQATAPQPASPALDPLEAAPGQALDSRFTLVRRLGKGSTAVGLLVDDAQTGSRQVLKV---
+--ALDDEAATRLDDEAQVLRLLPLHKRLVRLLDGPF--DVGGR--RALLLTSAGTRTLSEVLRERQRLSLDHLERFGSEL
+LEAAQALDAAGLRHRDVKPANIGVVRTPKHGEHLVLFDFSLARARSTDVRA-----GTPPYLDPFLEQGGRTGYDSAAEL
+YAVAVVLYEMASGQKPFYGDPEANPA--AVRDDLTVPDGIFDPSLQAPLSALFERALARDAQARFHTVAELAAAWEALFR
+NDA-------------DPVTAQDAETLAARAT-----LETPLSEAGLSARGLSALEAIKV----TAGPGGVAVEPHDVRT
+VRDLVLVD-PIKLNSLAGSTTETRAEVRARAKQWRAAFKKELMRQATQV-PQGTLPTPLDAAELLLRHAGAAHAEGVRAQ
+LR---LVLGLDGEVPALSTHAVLADARGVT----------------PGLVPQLFGRAQQAWTDVAETRSLLDSLDGALRA
+----------------AVAERGGVSTPDELTSALEQTLSPATPAEVRDAEPRRIVQGLLWLLLDRERAAARGEADVPALV
+QRRREGRVVAVAEMPVLLDVAETLGAAAEAAVDGAGDPESALVPADLVQTR-VAAVLDAVDGLPEALRSWRRAAALAAHV
+SATTCLSAAGEWHHRLLAPATAAHHALQGASGTVQLSRERAAERVGARFPALSPLPRDAALDRVLAEAELGLVFDEDLGP
+QGAYRSRQTLAPTTGFATRAETRLVEHQRPLSELGVEGQRLLDSQRNRSYLALGVPAQRLARLESALVRRFHAEPLDLTD
+LFIRLLKDQAAAHPKMTWDHVTAADAEPDGSRPAQGLNVLVRNLLPELEQHLSRTIGDPGRAASPVLLTGAAVLARYGHL
+GVLARWADLAEYRARPVWLVVPQVAGNVGPRLDGVSVPKNTPGQYVPLTPEWIDGLAALMAAQPLTEESRT
+>KD337_NAFOICDF_01419
+M-------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---------------------------SSTRRDPL---IGDLVDGRYEVLDRVARGGMSTVYRALDHRLDREVALKVMHP
+HLAEDPALVGRFEREAKTAARIS-HPHVVAVLDQGHTADEAGDVLAYLVMEHVPGRTLRAVIREEAPVAPRRAVALLEPV
+VEGLAAAHRAGLVHRDVKPENV-LVRTDG---RITVADFGLSRAATGHTSAGQTVFGTPAYLAP--ELISGTGGDARADV
+YGVGIMLFELLTGTQPFTAATPLQVAYRHVHERVPVPSSV-RPGLPEALDDIVLWCTEPRPADR------PEDAAALLPE
+LRRVAALLPQTAPADEAP-AADDAPTVALAVSPTVPTVPVPD-----AADATARLEPRRP--DPRRA-EPVPTPAT---A
+TAASPSSDLSSAVPEA---------------------------------------PRPAP------VAPRPASARQRRRT
+ARTPEVVLGAGMGRTVAVGAAVTLLLAGMALLLGWILGSGGISGPAGVVVPPLWGLEQQE----AAARLAEAGLTSAVVS
+RHDERFSDGVVLDVSPAAGSTVDAGGPVRLTVS-------DGPAPVP-------APDLAGLTVTDAHAVAEDGRVGVVVA
+DRVADRAVPAGA-------VVSQSPEAGAEMTPGDE------VAVVLSTGPATHPLPDLGGLTVGEARTRLADLGFVPDV
+RTLP-LPGPSGDAARVLRQGTPAGTVL----------------------------------------------------P
+EGA-----------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-------------SVQLWT---------------------------------------------------L
+>SA211_MHAAABBN_01089
+M-------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---------------------------SSARRDPL---VGGIVDGRYRVVERLARGGMSTVYLAVDERLDRQVALKVMHP
+HLAEDPVLVGRFEQEAKTTARLS-HPHVVAVLDQGHTEAEDGDVLAYLVMEHVPGRTLRTVIRDRAPLSPREALRFLRPL
+VDGLAAAHRAGLVHRDVKPENV-LVRDDG---RVTVADFGLSRAATAHTMAGQAVVGTPAYLAP--EHIAGAPADARSDV
+YAVGIILFELLTGRQPYTAATALQVAYRHVHERVPVPSTL-HPGLPEDLDDLVLWCTEPDPADR------PAGAGELLHR
+IDAVAAGL--------DP-DEPDRH------P-----AEGPGAEPAVAAPAADGPEDAAP----DGNLQTRALDAGDHHA
+TRVLPALA-ESDLDADMTDVIDTRAATRGADRRPAA-------HPAEPIGPLGLDPAPAD------RHPGRESPRRLRRA
+ARRPALDLGQGTGRAAAIGAAVTLLLTGVALLLGWTLGSGGLGVGGVAVVPDLDGLAREA----AEERLTAAGFTAAVTA
+RHNELRTEGTVVASSPAAGEPAGRGTPVELTVS-------AGPAPVP-------VPDLTGVVIRRAHGVARDARFTVEVA
+ERRTDPAVPAGA-------VIEQHPAPGEQATPGTA------VRVVLSEGRAVRPVPDVTGQDPETARTTLADDGWDARV
+HRLP-LPLAGRGESRVLHQSPAAGTAL----------------------------------------------------P
+EGT-----------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-------------AVHVWV---------------------------------------------------G
+>TT9_LFPAFLNI_01324
+M-------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---------------------------SSARRDPL---VGGIVDGRYRVVERLARGGMSTVYLAVDERLDRQVALKVMHP
+HLAEDPVLVGRFEQEAKTTARLS-HPHVVAVLDQGHTEAEDGDVLAYLVMEHVPGRTLRTVIRDRAPLSPREALRFLRPL
+VDGLAAAHRAGLVHRDVKPENV-LVRDDG---RVTVADFGLSRAATAHTMAGQAVVGTPAYLAP--EHIAGAPADARSDV
+YAVGIILFELLTGRQPYTAATALQVAYRHVHERVPVPSTL-HPGLPEDLDDLVLWCTEPDPADR------PAGAGELLHR
+IDAVAAGL--------DP-DEPDRR------P-----AEGPGTDPAAAAPAADGLEGAAP----DGDLPTRALDAGDHHA
+TRVLPALA-ESALDDDVTDVIDTRAATHGGDPRPAA-------RPAEPVGPLAVDPAPAD------RHPGRGSRRRLRRA
+ARRPALDLGQGTGRAAAIGAAVTLLLTGVALLLGWTLGSGGLGVGGVAVVPDLDGLAREA----AEERLTAAGFTAAVTA
+RHDELRTEGTVVDSSPAAGEPAGRGAPVELTVS-------AGPAPVP-------VPDLTGVVIRQAHGVARDARFTVEVA
+ERRTDPAVPAGA-------VIEQHPAPGEQATPGTA------VRVVLSEGRAVRPVPDMTGQDPETAHTTLADEGWDARV
+HRLP-LPLSARGESRVLHQSPAAGTAL----------------------------------------------------P
+EGT-----------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-------------AVHVWV---------------------------------------------------G

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000144.fa

@@ -0,0 +1,49 @@
+>AS2_ACLBLIBL_01551
+MT-THTTTAQRS----SKHP-TTIGIDVGGTGMKGGLVRLGSGPKSGTLRGDRFRIPTPQ
+PAMAEPVAATLAAITAELDARDKAPAPTAPLGVCFPSIV----------KDGVCLSANNI
+DPSWIGTDLKAAFEEHLRRPV-------------RVVNDADAAGLAEARYGAGRGVSGLV
+-----LVITLGTGIGGAMVHDGVLVP-----NFEVGSLELD-------------------
+-------------GVMAETRASAKARERED-LSWAEYAQRLQRFFSHVEHVFSPDLFIVG
+GGISKRPDDYLPLLSL------------RTP-IVPAQLRNNAGIVGAALAAHDSLADA--
+R
+>KBS0714_MOLHKGIG_01341
+MT-THTSTAQRS----SKYP-TTIGIDVGGTGMKGGLVRLGSGPKAGTLRGDRFRIPTPQ
+TAMPEPVAATLAAITAELDGREKAPKPSAPLGVCFPSIV----------KDGVCLSANNI
+DHSWIGTDLRGTFEEHLRRPV-------------TVVNDADAAGLAEARYGAGRGVRGLV
+-----HVITLGTGIGGAMIHDGMLVP-----NFEVGSLELD-------------------
+-------------GVMAESRASAKARERDQ-LSWAEYAERLQRFFSHVERIFSPDLFIVG
+GGISKRPDDYLPLLRL------------RTP-IVPAQLQNNAGIVGAALAAHGSLADG--
+N
+>KD337_NAFOICDF_01415
+MH--RSRPAPPSPPAPSAYPRRLLGVDLGGTAAKAGVLELARDGRARILARSRAAHAGAD
+PASAVTRA---------------AADALSRAGVRVPDGAGFACAAWLDPATGRARASPHL
+-PSLVGIR-----PAALLTPVLEAAGAAGHGLVPVALNDADAAALAESRLGAARPAPGDL
+PGAPTLFVALGTGVGGAVIVDGAVLPGARGMHGEAGHICVDPDGPACPCGARGCWELYAS
+ASALARTLPGRPIADVLEAAVAGPGPERDAVLDAGEW---LGRGLAPAVCLLDPVRVVVG
+GGLMAAGELLLPTARAALRRALPTAAADRPPELVAAALGNDAGWIGAALADGARV-----
+-
+>KD337_NAFOICDF_01447
+MSFPNTGVIPRLPPAPSKHP-SVLGVDIGGTGMKGGIVRLGHGPKSGTLRGDRFRLDTPQ
+PASPATMARTLAQIVSELDHREKAPDADSRVGVCFPSIV----------QHGVCRSANNI
+DPSWIGVSLQDTFEEALQRPV-------------TVVNDADAAGLAEARYGAGAGVPGLV
+-----MVITLGTGIGGAMINDGVLVP-----NFEVGSLELD-------------------
+-------------GVMAESRASAKAREREG-LDWPEYALRLQRFFSHLERIFSPDLFIVG
+GGISKRPHDYLPLLQL------------ETP-IVPAMLQNNAGIVGAALAAHADPADGLL
+R
+>SA211_MHAAABBN_01061
+MT-THTSTAQRS----SKYP-TTIGIDVGGTGMKGGLVRLGSGPKAGTLRGDRFRIPTPQ
+PAMPEPVAATLAAITAELDGREKAPKPSAPLGVCFPSIV----------KDGVCLSANNI
+DHSWIGTDLRGRFEEHLRRPV-------------TVVNDADAAGLAEARYGAGRGVRGLV
+-----HVITLGTGIGGAMIHDGVLVP-----NFEVGSLELD-------------------
+-------------GVMAESRASAKARERDQ-LSWAEYAERLQRFFSHVERIFSPDLFIVG
+GGISKRPDDYLPLLRL------------RTP-IVPAQLQNNAGIVGAALAAHGSLADG--
+N
+>TT9_LFPAFLNI_01296
+MT-THTSTAQRS----SKYP-TTIGIDVGGTGMKGGLVRLGSGPKAGTLRGDRFRIPTPQ
+PAMPEPVAATLAAITAELDGREKAPKPSAPLGVCFPSIV----------KDGVCLSANNI
+DHSWIGTDLRGRFEEHLRRPV-------------TVVNDADAAGLAEARYGAGRGVRGLV
+-----HVITLGTGIGGAMIHDGVLVP-----NFEVGSLELD-------------------
+-------------GVMAESRASAKARERDQ-LSWAEYAERLQRFFSHVERIFSPDLFIVG
+GGISKRPDDYLPLLRL------------RTP-IVPAQLQNNAGIVGAALAAHGSLADG--
+N
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000145.fa

@@ -0,0 +1,49 @@
+>AS2_ACLBLIBL_01557
+--------MTEHTAPTPLPLSLLDLATVRDGASVAEAVAESVEQAQAAERAGFRRVWYAE
+HHNMPAIASSATSVLIAHVAAHTESIRLGSGGVMLPNHSPLVIAEQFGTLAELHPGRIDL
+GLGRA-------PGTDQRT-------LQALRRDPS-------------------------
+------------AAER------------FPQDVLELQGYLTGRTRIPG-----IEAYPGK
+GTDVPLYILGSS-AFGAQLAAQLGLGYAFASHFAPQMLEHAARLYREHFEPSEALAEPHF
+IAAANVIAADTREEADREWE--AARRARIRMMLGRGRTLSDDEVEMLLHSPAGQQVLTML
+ECTAVGTGEETATWLRDFAAKVQADELIITTAAQDAGVRRRTLELLGEHVVRA
+>KBS0714_MOLHKGIG_01334
+--------MTEHTAPTPLPLSLLDLALVRDGAPMGEAFAESVEQARVAEAAGFRRVWYAE
+HHNMPSIASSATAVLIAHVAAHTDSIRLGSGGVMLPNHSPLVIAEQFGTLAELHPGRIDL
+GLGRA-------PGTDQRT-------LQALRRDPS-------------------------
+------------AAER------------FPQDVLELQGYLTGQSLIPG-----IDAYPGK
+GTNVPLYILGSS-AFGAQLAAQLGLGYAFASHFAPQMLEHAARLYREHFEPSEALAEPHF
+IAAANVIAADTEEVAEREWQ--AAQRARIRMMLGRGRTLTDDEVEMLLHSPAGQQVLGML
+ECTAVGTGPTTAAWLHDFAARVQADELIITTAAQDAGVRRRTLELLGEHVVRA
+>KD337_NAFOICDF_00131
+---------------MSIPLSVFDPVLLPAETDPREAIDDARTLAAAADALGYRRLWHGE
+HHLNPGVLGSNPALTLALVGPVTQHIRLGSAASLVGPRTPLVLAEDFGLLAAAFPGRIDL
+GLGRAAAPGGPPPGTRAETPTGDGGPAQDPQREPAGAGASSGQDPAAGPSEVDGVVIPAA
+PDLSAALGSPLRAASRALLPTPSTPALDYGAQVDLLLGLLDGTAQHDGAALGQVVARP--
+AVDVEPWVLGSGPGVSAEVAARRGLRFGANYHVSPAGTVAAVRRYRELFRPSPEVPCPVV
+SVSAEVLIADTAAEARRRASGYAAWVLSIRSGAGAVPYPSPAHPEPSRTPQEEALVADRL
+QTRFVGTAEQVAERLDALARLTGADELLISASAHRVEHRVETLTRLAEIWRTA
+>KD337_NAFOICDF_01453
+MTADVRPVVPPETAPAGVPLSLLDLATVRGDQRIGEALGQSVELAQTAEAQGFTRVWYAE
+HHNMPGIASSATAVLLAHVAAHTERIRVGSGGVMLPNHSPLVVAEQFGTLAELHPGRVDL
+GLGRA-------PGTDQRT-------LQALRRSPE-------------------------
+------------AADR------------FPQDVLELQGYLRGESRMPG-----IDAYPGR
+GTDVPLWILGSS-AFGANLAAQLGLGYAFASHFAPQMLEHAARLYREHFTPTDALDAPHF
+IAAANVVVADTDEEAQRLWE--ATRRSRVRMFLGRGRHLTEDELDMLMDSPAGEQVLGML
+RHTAVGTPDVVRAWLDDFAARVEADELIVTAAAVDHPARVRTLELLGEHVIRR
+>SA211_MHAAABBN_01055
+--------MTEHTAPTPLPLSLLDLALVRDGAPMGEAFAESVEQARVAEAAGFRRVWYAE
+HHNMPSIASSATAVLIAHVAAHTDSIRLGSGGVMLPNHSPLVIAEQFGTLAELHPGRIDL
+GLGRA-------PGTDQRT-------LQALRRDPS-------------------------
+------------AAER------------FPQDVLELQGYLTGQSLIPG-----IDAYPGK
+GTNVPLYILGSS-AFGAQLAAQLGLGYAFASHFAPQMLEHAARLYREHFEPSEALAEPHF
+TAAANVIAADTEEVAEREWQ--AAQRARIRMMLGRGRTLTDDEVEMLLHSPAGQQVLGML
+ECTAVGTGPTTAAWLHDFAARVQADELIITTAAQDAGVRRRTLELLGEHVVRA
+>TT9_LFPAFLNI_01290
+--------MTEHTAPTPLPLSLLDLALVRDGAPMGEAFAESVEQARVAEAAGFRRVWYAE
+HHNMPSIASSATAVLIAHVAAHTDSIRLGSGGVMLPNHSPLVIAEQFGTLAELHPGRIDL
+GLGRA-------PGTDQRT-------LQALRRDPS-------------------------
+------------AAER------------FPQDVLELQGYLTGQSLIPG-----IDAYPGK
+GTNVPLYILGSS-AFGAQLAAQLGLGYAFASHFAPQMLEHAARLYREHFEPSEALAEPHF
+IAAANVIAADTEEVAEREWQ--AAQRARIRMMLGRGRTLTDDEVEMLLHSPAGQQVLGML
+ECTAVGTGPTTAAWLHDFAARVQADELIITTAAQDAGVRRRTLELLGEHVVRA
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000151.fa

@@ -0,0 +1,61 @@
+>AS2_ACLBLIBL_01792
+MSIN---PAAAAHAADATAAQDALARHGLVL---RTLAPLSRGFDGADP------AR--A
+EHPAHVRHTAAVEKGFYEEVPQGAAAD-QDLGVSADDAKVLRGVYLSADDPARREPVGTF
+VDWTSRLTTSPGAELPVWMISNVTVSPGHRRRGILRAMMTASLEEAVAAGVPVAALTASE
+STIYGRFGFGAASTARTVRVDVRGDVVLAADAAGRTDEDAGTVLREDPRELAGVVEALHD
+RVRRGTPGSVHRPTGHVIRWEDRSAAKNDGRGSGLFAAVHRDADGAVQGVALYRFDGWGK
+E-----PTTVSVEVFLAATDAAARQLWRYLTRLDLIERLRMTRCPDDGGLEQVLADRRRV
+RTKSVWDDLYLRVLDVPVCLGGRGYAPEVVGEVVLAVADAAGHAAGTWRLRVADG-----
+-VGRAERLADDARADLALDVAHLSAVWLGGVRAG----ALVRAGVVDEREPGAAARLDAL
+LAPAAAVHLLTGF
+>AS2_ACLBLIBL_01793
+MTPRTDAPDAWLDPAPATA--EALAAHGLEL--LRVPSPWETG--DADPDAPFDHARRWA
+DAPAVRRHTAVLQRNFHEVGDPDFALADRFIGVEQGDRRRLSGVYPQGADPAATDPVGTL
+VDFTKDLNVGDGRMLPAWCLTEVTVSPTHRRRGILRAMMTESLRRAHAARVPIALLTATE
+ATLYRRFGFGVSTYHRSVWLDVTRGVQL------RGRRPDGSFRFVEPTASGALIDGLWR
+RAFEAQAGSVERIRFHAARETDRDPRVGEGRPQGLRAVVYSAPDGEDLGVAVYRVTGSTA
+ELVADDPVTATVVALWAATPEAHRALLEFLGNLDLVVRLRLPAVAADRLLEFLVLDESRI
+YTRGVHHHLWHRVLDVAACFEARPYLHE--GAVTVTVEDDLGYAAGTWEIAAADG-----
+-VGRVRPAPQDA-AELTLDVAELGSVLLGGVKAE----MMREAGILLAHRPGAAADLDTL
+LRQARPPYSLTGF
+>KBS0714_MOLHKGIG_01102
+MTPHTDAPEGPSLRRLADAAEDRLGEHGLALRDLGVLGP---------------------
+EDPAASHFAAAVERGFYETVPTGAALR-QQLEAHAADGRRRLGVYAPGDDPAARRPAATF
+EDFVQPLTTSPGRTVDAWLITDVTVSPDARRRGVLRAMMLRSLADARDAGLCAAALTATE
+AAIYGRFGFGAATRWHAVRIDVSGAPAF------TGAPAGGRVTVEEPREIPGLVDELYG
+RVLPATPGSVQRTSFSVPRWEDREASRNEGRGSGLYAAVHRDDDGRVQGVALYRFEGWEK
+E-----PPTITVTAFLAATADARRGLVHHLARLDLVERIEWGRAPEPGWLEALFVDERRV
+SRHRGSDDLYLRVLNLPAAMAARGWAGD--GEVVVAVEDALGAIDGTWRLTVRQGRGAAE
+RLGPAADAVGLD-AGLRLDAARFSALWLGGHSRGAGAAVLAEAGVVAELRAGAAEAFDGL
+VRPSRPLHTLVGF
+>KD337_NAFOICDF_01683
+MRPHTDLQ--PTATPRADA--EVLAEQGLAL----VVAP----------------GR--A
+ADPAFERHTTAVERGFYEQVPSGEAMA-QLLEAGEADGRRMVDVLPLGADPATTRPVATF
+EDFRSELTVSPGVAVSAWLISGVTVDPGFRRRGLLRTMMTRSLADAVAAGVPVAALTASE
+AAIYGRFGFGAATRWRRARLDTRGDVRL------RGAPSAGRVTREEPREVGALADELYQ
+HVRRLTPGATQRPTMTAIGWEDRSRFKNDGKGSGLYAAVHRDAAGTAQGIALYRPQGWDV
+E-----PPTVTMELFLALTPDARRGLLTHLTSLDLIERIVWERAPEAGWPEALLEDERRL
+RTERDGDDLYLRILDVPAALGARADLGD--GEVVVDVTDPLGHAAGAWRIRARDG-----
+-VAEVTEAAEGE-AELGLDVADLSAVWLGGHGSAGGVAARVATGLVREVVPGAGARLDAL
+LRPSVPVRSLVGF
+>SA211_MHAAABBN_00821
+MTPHTDTPEGPSLRRLADAAEARLGEHGLALRDLGVLGP---------------------
+EDPAASHFAAAVERGFYETVPTGAALR-QQLEAHAADGRRRLGVYAPGEDPAARRPAATF
+EDFVQPLTTWPGRAVDAWLITDVTVSPDARRRGVLRAMMLRSLADARDAGLCAAALTATE
+AAIYGRFGFGAATRWHAVRIDVSGAPAL------TGAPAGGRVTVEEPREMPGLVDELYG
+RVLPATPGSVQRTSFSVPRWEDREASRNEGRGSGLYAAVHRDDDGRVQGVALYRFEGWEK
+E-----PPTITVTAFLAATADARRGLVHHLARLDLVERIEWGRAPEPGWLEALFVDERRV
+SRHRGSDDLYLRVLNLPAAMAARGWAGD--GEVVVAVEDALGAIDGTWRLTVRQGRGAAE
+RLGPAADAVRMG-AGLRLDAARFSALWLGGHSRGAGAAVLAEAGVVAELRAGAAEAFDGL
+VRPSRPLHTLVGF
+>TT9_LFPAFLNI_01051
+MTPHTDAPEGPSLRRLADAAEDRLGEHGLALRDLGVLGP---------------------
+EDPAASHFAAAVERGFYETVPTGAALR-QQLEAHAADGRRRLGVYAPGDDPAARRPAATF
+EDFVQPLTTWPGRTVDAWLITDVTVSPDARRRGVLRAMMLRSLADARDAGLCAAALTATE
+AAIYGRFGFGAATRWHAVRIDVSGAPAF------TGAPAGGRVTVEEPREIPGLVDELYG
+RVLPATPGSVQRTSFSVPRWEDREASRNEGRGSGLYAAVHRDDDGRVQGVALYRFEGWEK
+E-----PPTITVTAFLAATADARRGLVHHLARLDLVERIEWGRAPEPGWLEALFVDERRV
+SRHRGSDDLYLRVLNLPAAMAARGWAGD--GEVVVAVEDALGAIDGTWRLTVRQGRGAAE
+RLGPAADAVRMG-AGLRLDAARFSALWLGGHSRGAGAAVLAEAGVVAELRAGAAEAFDGL
+VRPSRPLHTLVGF
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000157.fa

@@ -0,0 +1,37 @@
+>AS2_ACLBLIBL_02080
+MSGAPATGQATTTAAGGSPSSPAPAPPEWDAVLFDLDDTLLDLRAAQHAAFDATVRRQWA
+GAADVDPARMAEATEAFASDAAGHYERYVAGELTFEQQRLARAADALRALGAPEESATPL
+EALWTADYEDVVRGHWALFPATAEVLAQVRSSGRGVGIVTNNVEAYQRAKADALGLEWVD
+VLIGSDTAGAPKPDPAPFLAGCARLGAEPGRTLMVGDSLTHDVAGARAAGLVPVWMSPAA
+PARGAAEDPVWDPERGCWRLRAIGGLRAWLRR------------
+>KBS0714_MOLHKGIG_00175
+-----------------------MTPPA--ALLLDLDGTLLDHGRAARIALGQAM--QEA
+GLTDADH---SSALLLWGELERIHFQEYLDGQTTFEEQRVRRVRAFLAHYGRTR-LDRTS
+ALAWFDTYRTAYERAWS-------------------------------------------
+------------------------------------------------------------
+--------------------------------------------
+>KBS0714_MOLHKGIG_00854
+-----MSRDASTTPAGG--SAGAPAPPAWDAVLFDLDDTLLDLRSAQHAAFDATVRRQWA
+GAADVDPAVLAEATDAFASDAGGHYGRYVAGELTFEEQRLARVADALRALGVPEDAATPL
+DGLWTTDYEEVVRGHWALFPATADVLAEVRGTGRGVGIVTNNVEAYQRGKADALGLEWVE
+VLIGSDTAGAPKPDPAPFLAGCSRLGTDPGRTLMVGDSLRHDVEGARSAGLVPVWMSPDA
+PAHGGAEEPLWDEEHACWRMRAIGGLRTWLAA------------
+>KD337_NAFOICDF_01975
+-----MIR-----------TPGTPSAPVVDGVLFDLDDTLLDLRGAQLPAFAETVRAQWP
+DAPPAEAGVFVRAADHFAADRSGHYQRYIAGELDFAGQRLARARDALAVLGAPGAVAEPD
+PALWTDEYEVRVRAHWALFDDVVPTLATLRSSGVALGIVTNNVEAYQRAKADALGLEAIT
+VLVGSDSAGAPKPDPAPFLEACRRMGTTPGRTACVGDSLSHDVRGARAAGLVPVWLRRGA
+GAADGGGEGRWDAAEGAWTIGGLGALAAWFPGSGADLASGREVL
+>SA211_MHAAABBN_00576
+-----MSRGASTTPADG--SAGAPAPPAWDAVLFDLDDTLLDLRSAQHAAFDATVRRQWA
+GAADVDPAVLAEATEAFASDAGGHFGRYVAGELTFEEQRLARVADALRALGVPEDAATPL
+DGLWTTDYEEVVRGHWALFPATADVLAEVRGTGRGVGIVTNNVEAYQRGKADALGLEWVE
+VLIGSDTAGAPKPDPAPFLAGCSRLGTDPGRTLMVGDSLRHDVEGARSAGLVPVWMSPDA
+PAHGGAEEPLWDEEHACWRMRAIGGLQTWLAA------------
+>TT9_LFPAFLNI_00813
+-----MSRGASTTPADG--SAGAPAPPAWDAVLFDLDDTLLDLRSAQHAAFDATVRRQWA
+GAADVDPAVLAEATEAFASDAGGHFGRYVAGELTFEEQRLARVADALRALGVPEDAATPL
+DGLWTTDYEEVVRGHWALFPATADVLAEVRGTGRGVGIVTNNVEAYQRGKADALGLEWVE
+VLIGSDTAGAPKPDPAPFLAGCSRLGTDPGRTLMVGDSLRHDVEGARSAGLVPVWMSPDA
+PAHGGAEEPLWDEEHACWRMRAIGGLQTWLAA------------
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000159.fa

@@ -0,0 +1,25 @@
+>AS2_ACLBLIBL_02182
+MSPALMGASPWEWVLGLAVLAAGGALGALLRLTLQEHLPRRGVLAANTLAAGVLGFSLAL
+ALPSLVYASGLAGDPLGVAGLLVASLTA---GFCLALGTWSTVAGQAADAVLAGRWGAAG
+RIWAAHLGLGLLAAAAGWGLGLGARLLVA-
+>KBS0714_MOLHKGIG_00747
+------------------------------------------------------------
+----------------------------MLSGFCLALGTWSTVAAEAADAALARRWGAAA
+RLWTAHLGLGLVAVVVGWGAGLGLHAVLAG
+>KBS0714_MOLHKGIG_00748
+MSGAGYEVFALFQVALLACLAAGGVLGALARRRLTDRLGPRGLLTANTTAALLLGVTVGL
+AVPELVYASGG-------------------------------------------------
+------------------------------
+>KD337_NAFOICDF_02077
+MS-----AGTVLLTVLLAGLAA--AVGAGLRHLADHRWGGRGVLLANVTASALAG-----
+ALFAIGFGPGSA-DPEGPAGAALALGAA--GAFVLALGTWSTVAFQAAQEVLAGRTRRAV
+RVWLVHLASGTAAAVVGV---LAVGFLVR-
+>SA211_MHAAABBN_00478
+MSGAGYEVFALFQVALLACLAAGGALGALARGRLTDRLGPRGLLTANTTAALVLGATVGL
+AVPELVYASESWGDGQGL--MLVAAVSAVVSGFCLALGTWSTVAAEAADAALARRWGAAA
+RLWTAHLGLGLVAVVVGWGAGLGLHAVLAG
+>TT9_LFPAFLNI_00712
+MSGAGYEVFALLQVALLACLAAGGALGALVRRRLTDRLGPRGLLTANTTAALLLGVTVGL
+AVPELVYASGGGGDGQGL--VLVAAVSAVVSGFCLALGTWSTVAAEAADAVLARRWGTAA
+RLWAAHLGLGLVAVVVGWGAGLGLHAVLAG
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000164.fa

@@ -0,0 +1,54 @@
+>AS2_ACLBLIBL_02344
+MST-----------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------------------------------------------------------PT
+R----------------NPTPANSST------------------------------------------------------
+------------------------------------------------------------SGTTSRKAKTIVWVVLAAVV
+VAGVIAGVVAVGAARNATPDAAATQAGQSAAQGSGPTTAE---EAGELVVRPNSRVLSKAPNEQAVLVEFLDFECEGCGA
+AYPVVEELRAEYADTVTFVTRYFPLPGHRNAMPAAVAVEAAAQQGEYEAMYQRMFETQAQWGEATEDKSPVFRGYAEELG
+LDMAAYDKAVADPATRARVEADVADGIALGVQGTPTFFLDGEMLTLT-SLEQFRAEVDAAASN--------
+>KBS0714_MOLHKGIG_00611
+MT------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-------------------------------------------------------------------------------S
+T----------------DPTPAKAAS------------------------------------------------------
+------------------------------------------------------------APNRQRRAKIIVWVVLAALV
+LAGVV-AFFAARAPS--TPEAAPAQAGQAASSGTGQTAAS---EAAP-VVRPDSRVLSQAPNEKAVLVEFLDFECEGCKA
+AHPVVEELRAEYADTVTFVHRYFPLPGHPNSMTAAVAVEAAAQQGAYEAMYQKMFDTQEQWSHTGQDRSPVFRGYAEDLG
+LDMTAYDKAVADPATRARIEADVADGVALGVQGTPTFFLDGQVLTLN-TLEQFRAEVDAAASN--------
+>KD337_NAFOICDF_01190
+MSWRTIRTEAGSAVLLVVVTAVALLWANSPLSEAYFGLWDVEIGFDVGGFGLHMNLHHWINDGLMMTFFLVVGLEVRQEF
+AHGTLRDASRARLALIAGVVGVALPAVFYILIVAAAGGEGLGGWGAVVGTDTAFLLGALALVGPKLSGQLRVFLLTLTVV
+DDFLAVSIIGIVYSDEIRLVPLLIAGACLVGLWLLGRSRQWSATPYVLIVIVLWFATVESGVHASLAGMVAGLLIPAYPT
+RRQQVVEARQLFRDFWQSPSAASARAVDRGLAQGISVNERMHEVLRMPTALVIVPIFALANAGVDLRGGVLVDSFQSSVT
+WGVIVGLVLGKLLGIGLATFVAVKLGAGRLPEGVGMGSVFGGAALSGIGFTVSLLVIGLAFGSTSDLGRQATVGVLVAMV
+LATALGWLIF-----------------RVAAKRWGEETADLPMVLTP-PVDPEVDHIRGPEDAQLTLVEYIDFECAYCAH
+ATGSWDDLRSRFGDDLRYVVR--QLPHHPHGPLAARASEAASNQGMFWPWLDFVFTRQDAL-----EREDLIR-YAEELG
+LDVAQFTADLDSAAVGARVERDLESADASGAHATPTFFVDGRRLLGSYDARTLTSALEASRRGTRTQEVRS
+>SA211_MHAAABBN_00327
+MST-----------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------------------------------------------------------PT
+R----------------NPTPSDPST------------------------------------------------------
+------------------------------------------------------------PGTTSRKAKTIVWVVLAAVV
+LAGLIVGVVAASGPR----DAAPQGSGQTASSGTGQSAPS---EATP-VMRPDSRVLSKAPNEQAVLVEFLDFECEGCKA
+AYPVVEELRAEYADTVTFVHRYFPLPGHPNSMTAAVAVEAAGQQGQYEAMYQQMFDTQEQWSHTTEDRSPVFRGYAEDLG
+LDMAAYDAAVADPATRDRIEADVADGTALGVQGTPTFFLDGQMLTLN-TLEQFRAEVDAAATT-------D
+>SA211_MHAAABBN_01771
+MTS-----------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------------------------------------------------------P-
+-----------------DPTASTPSS------------------------------------------------------
+-----------------------------------------------------------PTPSRQRRAKIVVWVLLGLVV
+AAALI-GYLVARGTA----TAQQQDPNQSTAQSTGQSTGS----AGQ-LVRENSRVLSQAPNEKAVLVEFLDFECEACAA
+AYPFVEDLRAEYADTVTFVHRYFPLPGHPNSVTAAIAVEAAAQQGAYESMYQKMFETQTEWSHTTEDRSPVFRAYAEELG
+LDMAAYDAAVADPATRDRVELDVADGTALGVAGTPTFYLDGEPLTVN-SLEEFTAAVEAATQD--------
+>TT9_LFPAFLNI_02008
+MST-----------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------------------------------------------------------PT
+R----------------NPTPSDPST------------------------------------------------------
+------------------------------------------------------------PGTTSRKAKTIVWVVLAAVV
+LAGLIVGVVAASGPR----DAAPQGSGQTASSGTGQSAPS---EATP-VMRPDSRVLSKAPNEQAVLVEFLDFECEGCKA
+AYPVVEELRAEYADTVTFVHRYFPLPGHPNSMTAAVAVEAAGQQGQYEAMYQQMFDTQEQWSHTTEDRSPVFRGYAEDLG
+LDMAAYDAAVADPATRDRIEADVADGTALGVQGTPTFFLDGQMLTLN-TLEQFRAEVDAAATT-------D

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000173.fa

@@ -0,0 +1,43 @@
+>KBS0714_MOLHKGIG_01601
+----------MDTF--RH----QGLTFDVRDGGPAEGEVVLLLHGFPQDATSWRHVEPLL
+HAAGLRTLAPDQRGYSPGAAPRA---TAAYRLPALVGDAVALADAAGARRVHVVGHDWGG
+AVAWALATAHPERVASLTVLS-TPHPAALARALRGPDQLRRSWYIAAFQAPA-----LPE
+RILA----RRLGSLLQRGQVPGAEHY---ARRFSTPQSLRGPVNWYRA------------
+----NPD---LVTTTRSAPVTVPTTYVWGTRD--AALGPRAAELTAGQVAGEYRFVKLDA
+DH--WLPEREADAVA--RAILD--RVR
+>KD337_NAFOICDF_00271
+-------------------------MLHRREYGDPDGVPVLHFHGTPGSGREAAALDAAA
+RAAGVRLIAPDRPGM--GRTPH----LPGRRLAHWPAEVTRLLDELGIDRAAILAWSGGG
+PYAVACLARIPERLTAVALLA----PAGLLRGIPWANRLFPRLYLPAAGAIARARDWAPA
+AALGVFRWRRMRSRLADG--PPAASP---EREPLAPSSAAVLAASWREAFRQGHAGPVQD
+EQVINEDWSPLLTSARRAPVPV---RIWHGRR--DRVVPHRHSRRLAAALGAFLVDAHDG
+DHPGALLTAGPEALGWLAASAE-----
+>KD337_NAFOICDF_01201
+MTGGDALWGRVDAF--RH----QGLTFDVRDGGPAEGEVVLLLHGFPQDSTSWRHVEPLL
+HAAGLRTLAPDQRGYSPGAAPRA---TAAYRLPALVGDAVALADAAGARRVHVVGHDWGG
+AVAWALATAHPERVASLTVLS-TPHPAALARALRGSDQLRRSWYIAAFQAPA-----LPE
+RILS----RRLGSLLQRGQVPGAEHY---ARRFSTPQSLRGPVNWYRA------------
+----NPD---LVTTTRSAPVSVPTTYVWGTRD--AALGPRAAELTAGQVAGEYRFVALDA
+DH--WLPEREADAVA--RAILD--RVR
+>KD337_NAFOICDF_01824
+MT--------IPGFALEHIPLPSGVTLRVATGG--EGPAVVLLHGHPRTHATWHRVAPAL
+ADAGLRVVCPDLRGYGQSSAPEPSDDLHTHSDRTMAGDIALLMTHLGHDHFSVVGHDRGS
+YVAYRTALDFPERVDRMAVLDCVPILEALERA--DARFAEKWWHWFFFASPH-----AER
+VICA----DPLAWYQPDAQKMGQENYQDMVAAISDPQTVRSMIADYRASLHVDR------
+----DAD---ARDRARGHQIQCPTLVAWSKHDDMEDLYGNPAEVWESWCAHRPESAVIDS
+GH--HMAEDNPEQLT--AVLTEFFLPS
+>SA211_MHAAABBN_01313
+----------MDTF--RH----QGLTFDVRDGGPAEGEVVLLLHGFPQDATSWRHVEPLL
+HAAGLRTLAPDQRGYSPGAAPRA---TAAYRLPALVGDAVALADAAGARRVHVVGHDWGG
+AVAWALATAHPERVASLTVLS-TPHPAALARALRGPDQLRRSWYIAAFQAPA-----LPE
+RILA----RRLGSLLQRGQVPGAEHY---ARRFSTPQSLRGPVNWYRA------------
+----NPD---LVTTTSSAPVSVPTTYVWGTRD--AALGPRAAELTAGQAAGEYRFVALDA
+DH--WLPEREADAVA--RAILD--RVR
+>TT9_LFPAFLNI_01528
+----------MDTF--RH----QGLTFDVRDGGPAEGEVVLLLHGFPQDATSWRHVEPLL
+HAAGLRTLAPDQRGYSPGAAPRA---TAAYRLPALVGDAVALADAAGARRVHVVGHDWGG
+AVAWALATAHPERVASLTVLS-TPHPAALARALRGPDQLRRSWYIAAFQAPA-----LPE
+RILA----RRLGSLLQRGQVPGAEHY---ARRFSTPQSLRGPVNWYRA------------
+----NPD---LVTTTSSAPVSVPTTYVWGTRD--AALGPRAAELTAGQAAGEYRFVALDA
+DH--WLPEREADAVA--RAILD--RVR
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000177.fa

@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00011
+MDGADV---DGTADAVTEPALLHAEALECGYAGVPVTGRLDLVVRPGERVGVVGANAAGK
+STVLRTLVGDQEPVAGRVRLEGLPVLPESAAHRRALSVLTDEDAYFPTLTVAEHLTLVAL
+GHGVPEPDRVVDRELDFFALREAADAPPSRLSSGQRRRLLLAAALLRPFRLLALDEPEQR
+LDAGMRERLTARLAAL-EPASALVLVTHDPDVLAGAATR-CLIVDGRV-REAAVAEGAA-
+-------------------------------------------------WIRER------
+------------------------------------------T
+>AS2_ACLBLIBL_02586
+MQNTTLLPAPTAVDSRTE-TIVEIHDLRVDYGDFTAVDGIDLEIRRGEFFGLLGTNGAGK
+TTTIEIMEGHRAPTAGSVRVLGQD--PSDRTLRRRVGIMLQESGFAPDLTVRETLALIG-
+--RLTRRDDDVDRVLDLVDLRRRRDTRTGQLSGGEKRRLDFATAIFGSPELIFLDEPTTG
+LDIEARDALWHVVDRLRDEGATILLTTHYLEEAQERADRIALMHSGRIHRQGTVAELTSA
+FPSTISFRLSGELTVPFEDATIA-----PGGAVTIPTTNLQEDLYRLLVWSRSR----DV
+E--------LEGLNVGAEGLESLFRALN--------------A
+>KBS0714_MOLHKGIG_00377
+MQNTTLLPAPTAVDSRTE-TIVEIHDLRVDYGDFTAVDGIDLEIRRGEFFGLLGTNGAGK
+TTTIEVMEGHRAPTAGSVRVLGQD--PSDRTLRRRVGIMLQESGFAPDLTVRETLALIG-
+--RLTRRDDDVDRVLDLVDLRRRRDTRTGQLSGGEKRRLDFATAIFGSPELIFLDEPTTG
+LDIEARDALWHVVDRLRDEGATILLTTHYLEEAQERADRIALMHSGRIHRQGTVAELTSA
+FPSTISFRLSGEPTVPFEDATIA-----PGGAVTIPTTNLQEDLYRLLVWSRSR----DV
+E--------LEGLNVGAEGLESLFRALN--------------A
+>KD337_NAFOICDF_01180
+MSNA---------------PALATRGLTRRFGPVRAVDGVDLTVPAGEVLALLGPNGAGK
+TTLLDMALGFSPPSDGTVRILGSD--PVAAVRQGRVGAVLQTGGLLEDLSVRETVAMVA-
+--GCHRRHIGVSAALERAGLTGLAGRRVKKCSGGERQRLRFALALLTDPELLILDEPTAG
+MDVRARHDFWDTMHAEADRGRTIVFATHFLPEAEDFADRIVLMREGRIHADGTPAELATG
+GSVTLTGRWAGGGGDPDAPARLAAALGLPRDAVQLEPQHLSPGRLRVRVPAGGRVTGDDV
+ARHLLNERLVEDLAITHASLDDVFLSLTDAGQSAPSEPQESLA
+>TT9_LFPAFLNI_00383
+MQNTTLLPAPTAVDSRTE-TIVEIHDLRVDYGDFTAVDGIDLEIRRGEFFGLLGTNGAGK
+TTTIEVMEGHRAPTAGSVRVLGQD--PSDRTLRRRVGIMLQESGFAPDLTVRETLALIG-
+--RLTRRDDDVDRVLDLVDLRRRRDTRTGQLSGGEKRRLDFATAIFGSPELIFLDEPTTG
+LDIEARDALWHVVDRLRDEGATILLTTHYLEEAQERADRIALMHSGRIHRQGTVAELTSA
+FPSTISFRLSGEPTVPFEDATIA-----PGGAVTIPTTNLQEDLYRLLVWSRSR----DV
+E--------LEGLNVGAEGLESLFRALN--------------A
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000188.fa

@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00023
+MTALPDAVPAVFADLAGQGSAVEQLRRAAAEDRPTHAWMFTGPPGSGRSTAARAFAAALQ
+CEAPDPAARGCGRCHACRTVLAGTHPDVTVLATEAVTYRIEDVRSLVEAAQSTPATGRWR
+IFLMEDADRMTERATNVLLKAVEEPPARTVWMLCTPSPADVLPTVRSRCRLVTLSIPAVE
+DVADLLHRRDGLDRETALTTARISQSHVGMARRLARDPEALERRERILSLPLEATSVSDA
+MALAATLADVSKAEAESSAEARDAEELETLRRSLGLEPGEPVPPKLRQHVKRLEEDQTRR
+RRRSVRDSLDRAMIDVMGLFRDVLRVQLGAEGELINEHRRAEVEAYARGAAGDSAEVLAR
+IDAVATARERIAANVPEQLALEAMMLALLPRRVRTPRRR-
+>KBS0714_MOLHKGIG_00314
+MTA-SAPVPPVFADLAGQEAAVAQLRRAAAEDRPTHAWMFTGPPGSGRSTAARAFAAALQ
+CEVADPAARGCGECHACRTVLGGTHPDVTVLATEAVSYRIEDVRALVEAGQSTPATGRWR
+IFLMEDADRMTERATNVLLKAIEEPPARTIWMLCTPSPADVLPTVRSRCRLITLSIPAVE
+QVAELLHRRDGLDRETALTTARISQSHVGMARRLARDPEALERRERILSLPLQATAVSDA
+MALAATLAEVSKAEAESAAEARDAEELEALRRSLGLEPGEPVPPKLRHHVKRLEEDQTRR
+RRRAVRDSLDRAMIDVMGLFRDVLRVQLGADGELINEHRRDEIEAYARGTAGDSAEVLAR
+IDAVTTTRERIAANVPEQLALEAMMLALLPRRVRTPRRR-
+>KD337_NAFOICDF_00019
+MTG----APDVYSDLAGQDAAVAQLRRAATEDRPTHAWLFTGPPGSGRSTAARAFAAALQ
+CEQPDPANRGCGACHACRTVLGGTHPDVTVLATEAVSYRIEDVRALVEAAQSTPATGRWR
+IFLMEDADRMTERATNVLLKAIEEPPPRTIWMLCSPSPADVLPTIRSRCRLVTLRIPAPE
+DVAALLHRRDGLDEATALMTARISQSHVGMARRLARDPEALARREDVLSLPLQATAVSDA
+MAMAARLAEVSHAEAESSAAARDAEELAALRRQLGVAEGEAVPPKLRQQVKRLEEDQSRR
+RTRVTRDALDRAMIDVIGLFRDVLRVQLGAGGDLVNEHRRAEIERYAAGAAGSSAEVVAR
+IDAVHLARERLGQNVPEQLALEAMMLALLPARVRTPRGRR
+>SA211_MHAAABBN_00029
+M---TAPAPAVFADLAGQEAAVAQLRRAAAEDRPTHAWMFTGPPGSGRSTAARAFAAALQ
+CEVADPAARGCGECHACRTVLGGTHPDVTVLATEAVSYRIEDVRALVEAGQSTPATGRWR
+IFLMEDADRMTERATNVLLKAIEEPPARTIWMLCAPSPADVLPTVRSRCRLITLSIPAVE
+QVAELLHRRDGLDRETALTTARISQSHVGMARRLARDPEALERRERILSLPLQATAVSDA
+MALAATLAEVSKAEAESAAEARDAEELEALRRSLGLEPGEPVPPKLRHHVKRLEEDQTRR
+RRRAVRDSLDRAMIDVMGLFRDVLRVQLGADGELINEHRRDEIEAYARGAAGDSAEVLAR
+IDAVTTARERIAANVPEQLALEAMMLALLPRRVRTPRRR-
+>TT9_LFPAFLNI_00321
+M---TAPAPAVFADLAGQEAAVAQLRRAAAEDRPTHAWMFTGPPGSGRSTAARAFAAALQ
+CEVADPAARGCGECHACRTVLGGTHPDVTVLATEAVSYRIEDVRALVEAGQSTPATGRWR
+IFLMEDADRMTERATNVLLKAIEEPPARTIWMLCAPSPADVLPTVRSRCRLITLSIPAVE
+QVAELLHRRDGLDRETALTTARISQSHVGMARRLARDPEALERRERILSLPLQATAVSDA
+MALAATLAEVSKAEAESAAEARDAEELEALRRSLGLEPGEPVPPKLRHHVKRLEEDQTRR
+RRRAVRDSLDRAMIDVMGLFRDVLRVQLGADGELINEHRRDEIEAYARGAAGDSAEVLAR
+IDAVTTARERIAANVPEQLALEAMMLALLPRRVRTPRRR-
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000190.fa

@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00026
+-MRGPFARFRQSCSDDRELGTGLWRRAHDRFVRAMDRYWQVLEGDRGPDLLRTEQRNGVV
+HAGNVLAERLPAVRALCVRLHRDHAGDGE-HIPPEAADVHRELSRAAHELAATAQALAMH
+RLGQGSSDSVGRHAERTLAHLDRAEELAARL
+>KBS0714_MOLHKGIG_00311
+-MRGPFARFRQERADDRELGTGLWRRAHDRLGRAMDRYWQVLAGQRGTDVLSPEERNGVV
+HAGNVLTERLPAVRALCVRLHRDHEGDGE-HIPAEAADVHRELSRAAHELAATAQALALY
+RLGQGSAESVGRHAERTLGHLDRAEELGAGL
+>KD337_NAFOICDF_00022
+MIRGPFARFRQGRSDDRELGTGLWRRSHDRYVRALDRYWQVLEDGRSAGGFTPEERNGLV
+HAGNVLAERVPAVRALAARLHAAHPGDGEQHIPPVTAPVHRELSRASHELAAAAQAVAMF
+RRGVSGSEAVSRHAQRTLDHLDRAEGLAADL
+>SA211_MHAAABBN_00026
+-MRGPFARFRQERADDRELGTGLWRRAHDRLSRALDRYWQVLEGQRGTDVLSPEERNGVV
+HAGNVLTERLPAVRALCVRLHRDHEGDGE-HIPAEAADVHRELSRAAHELAATAQALALY
+RLGQGSAESVGRHAERTLGHLDRAEELGAGL
+>TT9_LFPAFLNI_00318
+-MRGPFARFRQERADDRELGTGLWRRAHDRLGRALDRYWQVLEGQRGTDVLSPEERNGVV
+HAGNVLTERLPAVRALCVRLHRDHEGDGE-HIPAEAADVHRELSRAAHELAATAQALALY
+RLGQGSAESVGRHAERTLGHLDRAEELGARL
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000199.fa

@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00056
+MKLNAYTDVCLRVLMTLAGDEGERLTSQQIADRIQVPYNHVIKAVAELRRRGAIDVARGR
+LGGATIAEAGLELRVGALVRDLAGWDEVIDCTGRESGVACPLAGDCRLRGALHRAREAFL
+AELDAVRVRDLVAAGPAA--GPVLLGLPEIPLPADPRPRRRTCPAGA
+>KBS0714_MOLHKGIG_00298
+MKLSAYTDVCLRVLMTLAAAEGERLTSQQIADRIQVPYNHVIKAVAELRRRGTIQVARGR
+LGGARITEAGLDQRVGELVRDLSPRAEVLDCAGHETGVPCPFAADCRLREALARAREAFM
+AELDLLTVRDLVRPGRAGATGPVSLGLPAMGSHA----------ATV
+>KD337_NAFOICDF_00034
+MKLTAFTDVCLRVLMTLGRDAGAKMTSQEIADRIGVPYNHVVKAVGELRRRGLVDVARGR
+AGGAVITEAGLDQRVGELVRALSGRPEVVDCEGLESGTPCPLLEACSLRGALARAREAFF
+AELDRQRVRDLVSL-PAE-----FLGLRRLPGA--------------
+>SA211_MHAAABBN_00006
+MKLSAYTDVCLRVLMTLAAAEGERLTSQQIADEIHVPYNHVIKAVAELRRRGTIEVLRGR
+HGGAMIAAAGLDQRVGELVRTLSSRDEVIDCAGRDSGVACPYAGDCRLRGALHRAREAFL
+AELDTLRIRDLVSAGPVG--GPVLLGLPEIPVTH-------------
+>TT9_LFPAFLNI_00305
+MKLSAYTDVCLRVLMTLAAAEGERLTSQQIADRIQVPYNHVIKAVAELRRRGTIEVLRGR
+HGGAMIAAAGLDQRVGELVRSLSSRDEVIDCTGRDSGVACPYAGDCRLRGALHRAREAFL
+AELDTVQIRDLVSAGPVG--GPVLLGLPEIPVAH-------------
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000204.fa

@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00063
+MGLALDAARAAGEAGDVPIGAVLVAGDGTVLAAVGNEREQHHDPTAHAEVLALRRGARAL
+AEAGEADGWRLSDCTLVVTLEPCPMCAGALLLARIPRVVFGAWDPKAGACGSVLDVVRDP
+RFNHAVQVRAGVRAEESAALLRGFFAVQR--G
+>KBS0714_MOLHKGIG_00291
+MGLALRAARAAGAAGDVPIGAALVAGDGTVLAVVGNEREQHHDPTAHAEVLALRRGAELR
+AAAGAGDGWRLTDCTLVVTLEPCPMCAGALLLARIPRVVFGAWDPKAGACGSVLDVVRDP
+RFNHQVQVRAGVRSEESAALLRGFFAAQR--D
+>KD337_NAFOICDF_00042
+MGLALDAARTAGEAGDVPIGAVLVDGDGRVLAAVGNEREQHHDPTAHAEVLALRRGAAAL
+AARGDADGWRLAECTLVVTLEPCPMCAGALLLARIPRVVFGAWDPKAGACGSVLDVVRDP
+RFNHTVQVRAGVRGDECAALLVDFFAARRPGG
+>SA211_MHAAABBN_02314
+MGLALRAARAAGAAGDVPIGAALVAGDGTVLAVVGNEREQHHDPTAHAEVLALRRGAELR
+AAAGAGDGWRLTDCTLVVTLEPCPMCAGALLLARIPRVVFGAWDPKAGACGSVLDVVRDP
+RFNHRVQVRAGVRSEESAALLRGFFAAQR--D
+>TT9_LFPAFLNI_00298
+MGLALRAARVAGAAGDVPIGAALVAGDGTVLAVVGNEREQHHDPTAHAEVLALRRGAELR
+AAAGAGDGWRLTDCTLVVTLEPCPMCAGALLLARIPRVVFGAWDPKAGACGSVLDVIRDP
+RFNHQVQVRAGVRAEESAALLRGFFAAQR--S
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000205.fa

@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00065
+M---ATSGRRGRLTRRAVLGLGAGALALGGGAAVANLAGVPPAP-VGPDVNALFGMRSST
+GHRYADLPGRAGRVDVYRPQGPGPFPVVVWNAGSGWRDDRGYHDGQTVARGLVPHGYAVA
+AFSVRSSKQGRFPAQVEDATAAVRWVRAHAVELDLDASRLTVAGTSSGGWNALMAGLTGG
+RDLDRAHVPPPGREVPPGGHAIPEEDRVQAILDFFAPTDFLAMNAQMPPGACADYNRQRR
+LEHCHLDDHSTKSAMLGVPVLASYGLTRLASPIAHVRPDSPPMMIVHGLKDPTVPWRQSL
+ELYEAAEAAGVRAAFYSVADAGHDLGMMGGGWGSAEVLRSGVPLSAVHATISWAAVAAFL
+DTVLPG---
+>KBS0714_MOLHKGIG_00289
+M---TSTARSPRVSRRAALGLGVGALAVGGVAVVTDLAGAPAGP-LGANATALYGMRSST
+GHTYATLPGRAGRIDVYRPPGQGPFPVLVWNAGSGWRSDRGYSDGVDVARGLVPHGYAVA
+AFSVRSSKQGTFPAQVEDATAAVRWVRRNAPGLQLDAGRVAVAGSSSGGWNALMAGLTGG
+QDLDREQVPLPGREVPDGGHAIPEEDRVQAIVDFFGPTDFLTMNRQMLPGACADYNRANR
+LKHCHLDDRSTKSDMLGVPVLASGGLTRLASPIAHVRPDSPPLLVVHGRKDVTVPWGQSL
+ELYRAAETAGLRTAFYSVAEGSHDLGMMTAKTRSAEVLRNGVPASAVHATISWSAVASFL
+DAVLPR---
+>KD337_NAFOICDF_00044
+MGGDTSTARAPRVRRRTLLGLGLGALAVGGTATALGHGSPVDSPALRQTMGALFGTTVIS
+GIVYADLPGAAGRMDLYLPEGEGPFPVLAWNAGSGWRSDRGFQGGDAVARGLVPAGHAVA
+AFSVRSAREDAFPAQVLDATAAVRHLRENAGELRVDPGRIAVGGNSSGGWNALMAGLTGG
+RDLDRSAVPAPGDEVPEGGHAIPEEDRVQAIVDCFAPVDFLQMNVQMPRGACEEYDRRNH
+TRHCHLDDASTKSRMLGAPVMARPELARLANPAVHVTPAAPPTLIVHGRADREVPYVQSR
+GLYQAYVGAGVPVAMYSVEGAGHDLQMMARRVGRTDVVRSGLPRQAVHGSISWSAVAAFL
+DVAMPRPRR
+>SA211_MHAAABBN_02311
+M---TSTARSPRVSRRAALGLGVGALAVGGVAVVTDLAGAPAGP-LGANATALYGMRSST
+GHTYAALPGRAGRIDVYRPPGQGPFPVLVWNAGSGWRSDRGYSDGVDVARGLVPHGYAVA
+AFSVRSSKQGTFPAQVEDATAAVRWVRRNAPGLQLDAGRVAVAGSSSGGWNALMAGLTGG
+QDLDREQVPLPGREVPDGGHAIPEEDRVHAIVDFFGPTDFLRMNRQMLPGACADYNRANR
+LEHCHLDDHSTKADMLGVPVLASGGLTRLASPIAHVRPDSPPLLVVHGRKDVTVPWGQSL
+ELYRAAEAAGLRTAFYSVAEGGHDLGMMTAKTRSAEVLRTGVPASAVHASISWSAVASFL
+DAVLPR---
+>TT9_LFPAFLNI_00295
+M---TSTARSPRVSRRAALGLGVGALAVGGVAVVTDLAGAPAGP-LGANATALYGMRSST
+GHTYAALPGRAGRIDVYRPPGQGPFPVLVWNAGSGWRSDRGYSDGVDVARGLVPHGYAVA
+AFSVRSSKQGTFPAQVEDATAAVRWVRRNAPGLQLDAGRVAVAGSSSGGWNALMAGLTGG
+QDLDREQVPLPGREVPDGGHAIPEEDRVHAIVDFFGPTDFLRMNRQMLPGACADYNRANR
+LEHCHLDDHSTKADMLGVPVLASGGLTRLASPIAHVRPDSPPLLVVHGRKDVTVPWGQSL
+ELYRAAEAAGLRTAFYSVAEGGHDLGMMTAKTRSAEVLRTGVPASAVHASISWSAVASFL
+DAVLPR---
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000206.fa

@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00066
+----MSVRVLAIGKKHEAWVSEGIDRYERRLKKPYDLSWRLLPHSARQEEAARTEESDRI
+LGAVGADEHLILLDERGTAFDSPGLARHLQSRFDVGAPVTVVIGGAYGVDARVHARADRV
+WSLSPLVFPHQLVRLILAEQVYRAQEISAGRPYHHA
+>KBS0714_MOLHKGIG_00288
+----MSVRVLAIGKKHEAWVVDGIDRYERRLKKPYDLSWRLLPHSARQEEAARTEESDRI
+LGAVGADEHLILLDERGTAFDSPGLARHLQSRFDVGAPVTMVIGGAYGVDARVHARADRV
+WSLSPLVFPHQLVRLILAEQVYRAQEISAGRPYHHA
+>KD337_NAFOICDF_00045
+MMVLMAVRVVAIGKRHESWVSEGITRYEKRLKKPWDLTWQLLPHSSRQEDAARAEESERI
+LAKVGPDEQLILLDERGRGFDSPGLSAHLQGQFDLGRTVTLVIGGAYGVDASVHARADRV
+WSLSGLVFPHQLVRLILAEQVYRAQEIAGGRPYHHA
+>SA211_MHAAABBN_02310
+----MSVRVLAIGKKHEAWVVDGIDRYERRLKKPYDLSWRLLPHSARQEEAARTEESDRI
+LGAVGADEHLILLDERGAAFDSPGLARHLQSRFDVGAPVTMVIGGAYGVDARVHARADRV
+WSLSPLVFPHQLVRLILAEQVYRAQEISAGRPYHHA
+>TT9_LFPAFLNI_00294
+----MSVRVLAIGKKHEAWVVDGIDRYERRLKKPYDLSWRLLPHSARQEEAARTEESDRI
+LGAVGADEHLILLDERGAAFDSPGLARHLQSRFDVGAPVTMVIGGAYGVDARVHARADRV
+WSLSPLVFPHQLVRLILAEQVYRAQEISAGRPYHHA
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000208.fa

@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00070
+MAVPSPSPARNGVNATRLRLPASG-WDTAQDYVLHRFGHVDPDGIRARFAAGEVVAADGT
+ALTPTTPLGVHDDLWYYRDVPHEDPLPVAHTLLHRDEHLVVIHKPHFLPTTPGGRFVQET
+ALVRLRNELGVDDLVPLHRLDRATAGVVMFSVDPATRGAYHLLFERRAVAKTYEAVSALP
+PDADDDGL---------VLGRFPLTVRSRIRKDKGVLRSVVEEVPAAASGRRAGAPVRTR
+RSNAAHAGANAESRVEVLGVGESAGTLAGRRVAHLRLTPRTGRTHQLRIHLAALGLGIAF
+DPFYPDLLDAAPDDFSRPLQLLSRSLRFTDPLTGREREFVSPAQLQERPR
+>KBS0714_MOLHKGIG_00283
+MAVPSPLPPRNGVNATRLRLPTSG-WPTAQDYVLHRFGHVDPEGIRARFARGEVVAADGT
+ALTPTTPLGVHDDLWYYRDVPDEAPLPVTHTLLHRDEHLVVIHKPHFLPTTPGGRFVQET
+ALVRLRNELGLDDLVPLHRLDRATAGVVMFSANPATRGAYHLLFERRAVAKTYEAV-ALL
+PDAPDDGARGPGAPTDPILGRFPLTVRSRIRKDKGVLRSVVEEIPAAASGRRAGAPVRTR
+RSNRPHAGANAESRVELLGVGVSAGTLAGRRVAHLRLTPRTGRTHQLRIHLAALGLGIAF
+DPFYPDLLDLAPDDVARPLQLLSRSLRFTDPVTGEEREFTSPAELQERPR
+>KD337_NAFOICDF_00056
+MAAPSPLPPRNGVNATRLRLPASG-WDTAQDYVLHRFGHVDPDGIRARFARGEVVARDGS
+PLTPTTPLGVHEDLWYYRDVPHEAPLPFQHTLIHRDERLVVIHKPHFLPTTPGGRFVQET
+ALVRLRNELGIDDLVPLHRLDRATAGVVMFSADPATRGAYHLLFERRAVTKRYEAI-SAL
+PPARDHADDDAAAWLD----RFPLVMRSRIRKDKGVLRSLTEEIPAAASGRAAGARVRTR
+KSNLSHAGANAETRIEVLDVGRSAGTLAGAPVVRFRLSPRTGRTHQLRLHLAALGLGIAF
+DPFYPDLLDAAPDDLARPLQLLSRSIAFTDPVTGEHREFVSPAELQERPA
+>SA211_MHAAABBN_02298
+MAVPSPLPLRNGVNATRLRLPASGPWASVQEYVLDRFGHVDPDGIRRRFASGQVVAADGA
+PIPADTPLGVHDDLWYYRDVPDEAPLPVTHTLLHRDEHLVVIHKPHFLPTTPGGRFVQET
+ALVRLRNELGLDDLVPLHRLDRATAGVVMFSANPATRGAYHLLFERRAVAKTYEAV-VLL
+PEAPDDGARGPGAPADPVLGRFPLTVRSRIRKDKGVLRSVVEEIPAAASGRRAGAPVRTR
+RSNRPHAGANAESRVELLGVGVSAGTLAGRRVAHLRLTPRTGRTHQLRIHLAALGLGIAF
+DPFYPDLLDLAPDDVTRPLQLLSRSLRFTDPVTGEEREFTSPAELQERPR
+>TT9_LFPAFLNI_00282
+MAVPSPLPLRNGVNATRLRLPASGPWASVQEYVLDRFGHVDPDGIRRRFASGQVVAADGA
+PIPADTPLGVHDDLWYYRDVPDEAPLPVTHTLLHRDEHLVVIHKPHFLPTTPGGRFVQET
+ALVRLRNELGLDDLVPLHRLDRATAGVVMFSANPATRGAYHLLFERRAVAKTYEAV-ALL
+PDAPDDGARRPGAPADPVLGRFPLTVRSRIRKDKGILRSVVEEIPPAASGRRAGAPVRTR
+RSNRPHAGANAESRVELLGVGVSAGTLAGRRVAHLRLTPRTGRTHQLRIHLAALGLGIAF
+DPFYPDLLDLAPDDVTRPLQLLSRSLRFTDPVTGEEREFTSPAELQERPR
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000214.fa

@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_00087
+MPDTSPG----PAPSSSSSGAPAHPSHFGFEVTHRLEAGGVDGAPLGRTGVISTPHGQIQ
+TPAFIPVATQATVKAVLPESMAELGAQALLANAYHLYLQPGDDLLDEAGGLGAFMNWPGP
+TFTDSGGFQVMSLGSGFKKVIDMKGPSAPDGQGADDAVAPGKERLANVDDDGVWFKSHLT
+GDRHRFTPEVSVGIQHRLGADVMFAFDELTTLHNSRGYQEEALERTRRWAQRCLDEHARL
+TGVRAARPYQALFGVIQGAQYEDLRRKACRDLAAMRADFPSAGELDGVTSGFDGYGVGGA
+LEKENLGTIVGWCAQELPEDKPRHLLGISEPDDLFTAVENGADTFDCVSPTRVARTGAFY
+TRDGRFNLPGAKYRRDFGPLDPACDCYTCAHYSRAYIRHLFKAKEMVAHTLISIHNERFT
+VSLVDRIRAALQDGTYAELKEETLGRYYAPKG
+>KBS0714_MOLHKGIG_00270
+MPDTPQP----PA-------VPAHPDHFGFEVTHRLETPGHDGAPLGRTGVITTPHGRIQ
+TPAFIPVATQATVKAVLPESMKDLGAQALLANAYHLYLQPGDDLLDEAGGLGAFMNWPGP
+TFTDSGGFQVMSLGSGFKKVIDMKGPGAPEGQGADDAVAPGKERLANVDDDGVWFKSHLT
+GDRHRFTPEVSVGIQHNLGADIMFAFDELTTLHNSRGYQEEALERTRRWAQRCLDEHARL
+TGVRAARPYQALFGVIQGAQYEDLRRKACRDLAGMRAEFPAAGELDGVTSGFDGYGVGGA
+LEKENLGTIVGWCAQELPEDKPRHLLGISEPDDLFTAVENGADTFDCVSPTRVARTGAFY
+TRDGRYNLPGAKYRRDFGPLDPECDCYTCAHYSRAYLRHLFKAKEMVAHTLLSIHNERFT
+VSLVDRIRAAMQDGTLAELKAETLGRYYAPKG
+>KD337_NAFOICDF_00064
+MPETSAPGTAGPTSSSAVTSDPAHPDHLGFEVRERLDAPGADGIALGRTGVLRTPHGEIQ
+TPAFIPVATQATVKAVLPESMAELGAQALLANAYHLYLQPGDDLLDEAGGLGAFMNWPGP
+TFTDSGGFQVMSLGSGFKKVIDMKGPAAPEGQGADDAVAPGKERLANVDDDGVWFKSHLT
+GDRHRFTPERSLQIQHNLGADVMFAFDELTTLHNSRGYQEEALERTRRWAQRCLDEHARL
+TAERAGRPYQGLFGVIQGAQYEDLRRKACRDLSGMTAEFAAAGERPATAHGFDGYGIGGA
+IEKENLGTIVGWCAQELPEDRPRHLLGISEPDDLFRAVENGADTFDCVSPTRVARTGAFY
+TRDGRYNLPGATYKRDFGPLDPECDCYTCAHYSRAYLRHLFKAKEMVAHTLISIHNERFT
+VSLVDRIRASIQAGTFAELKAETLGRYYAPKG
+>SA211_MHAAABBN_02285
+MPDTPQP----PA-------VPAHPDHFGFEVTHRLETGGADGAPLGRTGVITTPHGRIQ
+TPAFIPVATQASVKAVLPESMAELGAQALLANAYHLYLQPGDDLLDEAGGLGAFMNWPGP
+TFTDSGGFQVMSLGSGFKKVIDMKGPGAPEGQGADDAVAPGKERLANVDDDGVWFKSHLT
+GDRHRFTPEVSVGIQHNLGADIMFAFDELTTLHNSRGYQEEALERTRRWAQRCLDEHARL
+TGVRAARPYQALFGVIQGAQYEDLRRKACRDLAGMRAEFPAAGELDGVTSGFDGYGVGGA
+LEKENLGTIVGWCAQELPEDKPRHLLGISEPDDLFTAVENGADTFDCVSPTRVARTGAFY
+TRDGRYNLPGAKYRRDFGPLDPECDCYTCAHYSRAYLRHLFKAKEMVAHTLLSIHNERFT
+VSLVDRIRAAMQDGTLAELKAETLGRYYAPKG
+>TT9_LFPAFLNI_00268
+MPDTPQP----PA-------VPAHPDHFGFEVTHRLETGGADGAPLGRTGVITTPHGRIQ
+TPAFIPVATQASVKAVLPESMAELGAQALLANAYHLYLQPGDDLLDEAGGLGAFMNWPGP
+TFTDSGGFQVMSLGSGFKKVIDMKGPGAPEGQGADDAVAPGKERLANVDDDGVWFKSHLT
+GDRHRFTPEVSVGIQHNLGADIMFAFDELTTLHNSRGYQEEALERTRRWAQRCLDEHARL
+TGVRAARPYQALFGVIQGAQYEDLRRKACRDLAGMRAEFPAAGELDGVTSGFDGYGVGGA
+LEKENLGTIVGWCAQELPEDKPRHLLGISEPDDLFTAVENGADTFDCVSPTRVARTGAFY
+TRDGRYNLPGAKYRRDFGPLDPECDCYTCAHYSRAYLRHLFKAKEMVAHTLLSIHNERFT
+VSLVDRIRAAMQDGTLAELKAETLGRYYAPKG
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000225.fa

@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00112
+MTHVAARARVPKKGLLVFLVVAAVLLLLGALTVVRGIAADAARVNIVSVVDGNTVVVNQG
+GTQRTLVLAGVTSAGRNPEGLKVGPELCMGEQSYAWLRDRLPQGAVASVDTSREGAPEGM
+ESALVHIGGKTVNVDMAEAGMTAPTGIGVDDDMAEEIAAANRVAV---GR--GVGLYDVE
+EPCTYQNRLYEAQFALDQIPKD-AEDSIRRIDERSVEYAAGLDQVRLVQQEIQALDPENG
+TFEDLAYGPARESLLAEADPVVEEGLQVLRDLNARRNEIAARG
+>KBS0714_MOLHKGIG_00257
+MTHVAARARVPLKGLLVFLAVAAVLLLLGIVTVLRGVAADAARVDIVTVLDGNTVVVNQG
+GTERTVVLAGVTSAGRNPEGLKVGPNLCMGEESYAWLRDRLPQGATASMTTSDEGAPEGM
+ESAVISIGGGTVNVAMAEAGMAAPTDVAVGKRLAEEIAQANQEAV---GR--GVGLYDIE
+EPCTYQNRLYEAQFALEQIPED-AEASLTKIDERAVEYAAGLDQVRLVQQEVRALDPENG
+TFADLAYGPAKESLLAEADPVVEHGMQVLKDLNTRRNEIAARG
+>KD337_NAFOICDF_00080
+MTHVAAQARVPKKGLIVFLVVAGVLLALGAASAVRGLVVARDTVEVVRVVDGNHVVVNAD
+GEERTLTLAGVRSAIRNPEGLRVGPEYCMGEEAYAWLRDRLPQGATVRVDRSDEGAPEGE
+QSAVFTVAGKEVNVDMAKAGMAAPTGLGVSGDLEEQIAQANQQAQTAGGRNNGVGLYNRD
+ETCTLGYQLYAAQTELEKVPTAPAANTVVEIDKKSVEYANALDAVRLVQQRIEGLDASSG
+DFTGLAYAPAKDRLLARANPVVDEGMQVLRDLNAQRNALAG-G
+>SA211_MHAAABBN_02271
+MTHVAARARVPLKGLLVFLAVAAVLLLLGIVTVLRGVAADAARVDIVTVLDGNTVVVNQG
+GTERTVVLAGVTSAGRNPEGLKVGPNLCMGEESYAWLRDRLPQGATASMTTSDEGAPEGM
+ESAVISIGGGTVNVAMAEAGMGAPTEVAVSERLAEEIAQANQEAV---GR--GVGLYDIE
+EPCTYQNRLYEAQFALEQIPED-AEASLTKIDERAVEYAAGLDQVRLVQQEIRALDPENG
+TFADLAYGPAKESLLAEADPVVEHGMQVLKDLNTRRNEIAARG
+>TT9_LFPAFLNI_00256
+MTHVAARARVPLKGLLVFLAVAAVLLLLGIVTVLRGVAADAARVDIVTVLDGNTVVVNQG
+GTERTVVLAGVTSAGRNPEGLKVGPNLCMGEESYSWLRDRLPQGATASMTTSDEGAPEGM
+ESAVISIGGGTVNVAMAEAGMAAPTEVAVGKRLAEEIAQANQEAV---GR--GVGLYDIE
+EPCTYQNRLYEAQFALEQIPED-AEASLTKIDERAVEYAAGLDQVRLVQQEIRALDPENG
+TFADLAYGPAKESLLAEADPVVEHGMQVLKDLNTRRNEIAARG
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000227.fa

@@ -0,0 +1,70 @@
+>AS2_ACLBLIBL_00114
+MTSPQTTESTTALPHERVEPKDTASAPFVARHIGPRPADVEHMLQTLGYDSLEALVDTAVPAGIRQPKPLELPAPLTESA
+VLEQLREIAGRNVMKTQMIGQGFSDTVTPGVILRKVLENPAWYTAYTPYQPEISQGRLEALLNYQTMVQDLTGLDIANAS
+LLDEASAAAEAVLLMHRANRRRTDGVTLLDADLFPQTLSVVRLRAEAVGIDVRVADLSAGIPEDVRAEVEEKGLCGVVLQ
+QPGDSGRIHDHAAVIAQAKEAGALVTVAADILSLALITPPGEQGADIAVGSTQRFGVPLFFGGPHAAYMAVKEGLQRSMP
+GRLVGVSHDDAGKPAYRLALQTREQHIRREKATSNICTAQALLAIVASMYAVYHGPQGIARIARHAHAQAVRLAEALRAG
+GVEVAEEHFFDTLTVRVPGRAEQVLQAAEENGVNLRLVDADTLRIAADETTVDADLVAVLTAFGLDAGALPASAHEGAVA
+TPAVPEALRRSSAFMTHPVFNTHHSETQMLRYLRRLSGYDLALDRTMIPLGSCTMKLNATAEMEAISWPEFCSIHPFAPD
+HQTEGWRFLIADLEAKLAEITGYAGVSVAPNAGSQGEFAGLWAIRQYHLARGEGERDICLIPASAHGTNAASAVLAGLKV
+VVVATADDGTIDAADLDAKIAANEGRIAAIMITYPSTHGVYDADVKEVCATVHAAGGQVYIDGANLNALVGLAQPGGFGG
+DVSHLNLHKTFCIPHGGGGPGVGPVAVGEHLVPYLPSREALMTAAPHGSAGVLPISWAYIHLMGAEGLRSATEHALLGAN
+YISRRLAPLYPTLYTGNDGLVAHECILDLRELTARTGVTAEDVCKRLIDYGFHAPTLAFPVAGTLMVEPTESEDLQEIER
+FIEAMEAIHAEITAVTPETVADSVLRRAPHTLNVLMADEWDRPYSRAQAGTPVPSLRLDKYLPPVGRIDGAYGDRNLVCS
+CPPPEAFEDAVADTADED------------
+>KBS0714_MOLHKGIG_00255
+MTSPQTTESTTALPHERVEPKDTASAPFVARHIGPRPADVEHMLQTLGYDSLEALVDTAVPAGIRQPKPLELPAPLTESA
+VLEQLREIAGRNVMKTQMIGQGFSDTVTPGVILRKVLENPAWYTAYTPYQPEISQGRLEALLNYQTMVQDLTGLDIANAS
+LLDEASAAAEAVLLMHRANRRRTDGVTLLDADLFPQTLSVVRLRAEAVGIDVRVADLSAGIPEDVRAEVEEKGLCGVVLQ
+QPGDSGRIHDHAAVIAQAKEAGALVTVAADILSLALITPPGEQGADIAVGSTQRFGVPLFFGGPHAAYMAVKEGLQRSMP
+GRLVGVSHDDAGKPAYRLALQTREQHIRREKATSNICTAQALLAIVASMYAVYHGPQGIARIARHAHAQAVRLAEALRAG
+GVEVAEEHFFDTITVRVPGRAEQVLQAAEENGVNLRLVDADTLRIAADETTVDADLVAVLTAFGLDAGSLPASAHEGAVA
+TPAVPESLRRSSAFMMHPVFNTHHSETKMLRYLRRLSGYDLALDRTMIPLGSCTMKLNATAEMEAISWPEFCSIHPFAPD
+HQTEGWRFLIADLEAKLAEITGYAGVSVAPNAGSQGEFAGLWAIRQYHLARGEGERDICLIPASAHGTNAASAVLAGLKV
+VVVATADDGTIDAADLDAKIAANEGRIAAIMITYPSTHGVYDADVKEVCATVHAAGGQVYIDGANLNALVGLAQPGEFGG
+DVSHLNLHKTFCIPHGGGGPGVGPVAVGEHLVPYLPSREALMTAAPHGSAGVLPISWAYIHLMGAEGLRSATAHALLGAN
+YISRRLAPLYPTLYTGNDGLVAHECILDLRELTARTGVTAEDVCKRLIDYGFHAPTLAFPVAGTLMVEPTESEDLEEIER
+FIEAMEAIHAEITAVTPETVADSVLRRAPHTLNVLMADEWDRPYSRAQAGTPVPSLRLDKYLPPVGRIDGAYGDRNLVCS
+CPPPEAFEGAVADTADED------------
+>KD337_NAFOICDF_00082
+MTSPLTP----------TEPRDTASAPFVARHIGPRGEDVRHMLQTLGLGSVDELVDTAVPSVIRQSAPLDLPAPLTEAA
+ALEQLREIAGRNVVKTQMIGQGFYDTVTPGVILRKVLENPAWYTAYTPYQPEISQGRLEALLNYQQMVEDLTALPIANAS
+LLDEASAAAEAVLLMHRANRKKADGITLLDADLFPQTLTVAQMRAEAVGLEVRVADLSAGIPEDVRAEVEEKGLCGVVLQ
+QPGDSGRLHDHSAVIAQAKEAGALITVAADILSLALITPPGEQGADIAIGSTQRFGVPLFFGGPHAAYLAVREGLQRSMP
+GRLVGVSHDDAGKPAYRLALQTREQHIRREKATSNICTAQALLAITASMYAVYHGPAGITAIARHAHAQAHRLAIALAGA
+GVEVAHAEYFDTLTLNVPGRAEEVVRAAEEAGVNLRLVDADIVRVACDETTVDEDLAAVLTAFGADPASLPAAPHEGAVQ
+TPAVPEAQRRTSAFMTHPVFNTHRSETQMLRYITRLANRDLALDRTMIPLGSCTMKLNATTEMEAISWPEFCAIHPFAPD
+HQTEGWRFLISDLEERLAEITGYAGVSVAPNAGSQGEFAGLWAIRQYHLAHGDGERDVCLIPASAHGTNAASAVLAGLRV
+VVVATADDGTIDSADLDAKIAAHEGRVAAIMITYPSTHGVFDGDVTEVCDKVHAAGGQVYIDGANLNALVGLARPGAFGG
+DVSHLNLHKTFCIPHGGGGPGVGPVAVGEHLVPFLPSAERLVTAAPHGSAGVLPISWAYIAMMGGEGLKDATEQALLNAN
+YISRRLADHYPTLYTGEGGLVAHECILDLRELTAQTGVTAEDVCKRLIDYGFHAPTLAFPVAGTLMVEPTESEDLAELDR
+FIDAMISIHAEITATTPETVEQSVLRRAPHTLGATTGEDWDRPYTRAQALYPLPSLVDDKYLPPVGRIDGAYGDRNLVCS
+CPPPEAFEEAAASPESTEPVSAADTASTSH
+>SA211_MHAAABBN_02269
+MTSPQTTESTTALPHERVEPKDTASAPFVARHIGPRPADVEHMLQTLGYDSLEALVDTAVPAGIRQPKPLELPAPLTESA
+VLEQLREIAGRNVMKTQMIGQGFSDTVTPGVILRKVLENPAWYTAYTPYQPEISQGRLEALLNYQTMVQDLTGLDIANAS
+LLDEASAAAEAVLLMHRANRRRTDGVTLLDADLFPQTLSVVRLRAEAVGIDVRVADLSAGIPEDVRAEVEEKGLCGVVLQ
+QPGDSGRIHDHAAVIAQAKEAGALVTVAADILSLALITPPGEQGADIAVGSTQRFGVPLFFGGPHAAYMAVKEGLQRSMP
+GRLVGVSHDDAGKPAYRLALQTREQHIRREKATSNICTAQALLAIVASMYAVYHGPQGIARIARHAHAQAVRLAEALRAG
+GVEVAEEHFFDTITVRVPGRAEQVLQAAEENGVNLRLVDADTLRIAADETTVDADLVAVLTAFGLDAGSLPASAHEGAVA
+TPAVPESLRRSSAFMTHPVFNTHHSETKMLRYLRRLSGYDLALDRTMIPLGSCTMKLNATAEMEAISWPEFCSIHPFAPD
+HQTEGWRFLIADLEAKLAEITGYAGVSVAPNAGSQGEFAGLWAIRQYHLARGEGERDICLIPASAHGTNAASAVLAGLKV
+VVVATADDGTIDAADLDAKIAANEGRIAAIMITYPSTHGVYDADVKEVCATVHAAGGQVYIDGANLNALVGLAQPGEFGG
+DVSHLNLHKTFCIPHGGGGPGVGPVAVGEHLVPYLPSREALMTAAPHGSAGVLPISWAYIHLMGAEGLRSATAHALLGAN
+YISRRLAPLYPTLYTGNDGLVAHECILDLRELTARTGVTAEDVCKRLIDYGFHAPTLAFPVAGTLMVEPTESEDLEEIER
+FIEAMEAIHAEITAVTPETVADSVLRRAPHTLNVLMADEWDRPYSRAQAGTPVPSLRLDKYLPPVGRIDGAYGDRNLVCS
+CPPPEAFEDAVADTADED------------
+>TT9_LFPAFLNI_00254
+MTSPQTTESTTALPHERVEPKDTASAPFVARHIGPRPADVEHMLQTLGYDSLEALVDTAVPAGIRQPKPLELPAPLTESA
+VLEQLREIAGRNVMKTQMIGQGFSDTVTPGVILRKVLENPAWYTAYTPYQPEISQGRLEALLNYQTMVQDLTGLDIANAS
+LLDEASAAAEAVLLMHRANRRRTDGVTLLDADLFPQTLSVVRLRAEAVGIDVRVADLSAGIPQDVRAEVEEKGLCGVVLQ
+QPGDSGRIHDHAAVIAQAKEAGALVTVAADILSLALITPPGEQGADIAVGSTQRFGVPLFFGGPHAAYMAVKEGLQRSMP
+GRLVGVSHDDAGKPAYRLALQTREQHIRREKATSNICTAQALLAIVASMYAVYHGPQGIARIARHAHAQAVRLAEALRAG
+GVEVAEEHFFDTITVRVPGRAEQVLKAAEENGVNLRLVDADTLRIAADETTVDADLVAVLTAFGLDAGSLPASAHEGAVA
+TPAVPEALRRSSAFMTHPVFNTHHSETKMLRYLRRLSGYDLALDRTMIPLGSCTMKLNATAEMEAISWPEFCSIHPFAPD
+HQTEGWRFLIEDLEAKLAEITGYAGVSVAPNAGSQGEFAGLWAIRQYHLARGEGERDICLIPASAHGTNAASAVLAGLKV
+VVVATADDGTIDAADLDAKIAANEGRIAAIMITYPSTHGVYDADVKEVCATVHAAGGQVYIDGANLNALVGLAQPGEFGG
+DVSHLNLHKTFCIPHGGGGPGVGPVAVGEHLVPYLPSREALMTAAPHGSAGVLPISWAYIHLMGAEGLRSATAHALLGAN
+YISRRLAPLYPTLYTGNDGLVAHECILDLRELTARTGVTAEDVCKRLIDYGFHAPTLAFPVAGTLMVEPTESEDLEEIER
+FIEAMEAIHAEITAVTPETVADSVLRRAPHTLNVLMADEWDRPYSRAQAGTPVPSLRLDKYLPPVGRIDGAYGDRNLVCS
+CPPPEAFEGAVADTADED------------

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000229.fa

@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_00121
+MK-NAPLPQDPIREAARNWERHGWGDVARPMAAVTSIMRAQQILLGRTQAALKPFGLTFA
+RYELLALLNFSREKRMRMSKASALLQVHPTSVTNAVDRLESAGLVERTPHESDRRALVLA
+LTDEGRRVAVAATETLNEEVFGRTGFDEADVDALIDVFGRFRAGAGDFEADGAD----TT
+TERPSA
+>KBS0714_MOLHKGIG_00249
+MK-KPPLAQDPIREAARNWERHGWGDVARPMAAITSIMRAQQILLGRAQAALKPYGLTFA
+RYELLALLNFSRENRMRMSKASALLQVHPTSVTNAVDRLEAAGLVERTPHESDRRALVLA
+LTDEGRRVAVAATETLNAEVFGRSGFGPADVDTLIDVLGRFRAEAGDFQVDGPDAGAPAT
+AEHTSS
+>KD337_NAFOICDF_00089
+MSTRDPLPQDPIREAARNWEHHGWGEVAAPMAAVTAIMRTQAILLARTQAVLKPFGLTFA
+RYELLALLNFSRERRQLMSKAGALLQVHPTSVTNAVDRLEAAGLVERQPHETDRRALLLA
+LTDEGRRVADAATEALNAEVFGATGFTDDDVAALNEILGRFRAGSGDFEA----------
+------
+>SA211_MHAAABBN_02261
+MK-KPPLAQDPIREAARNWERHGWGDVARPMAAITSIMRAQQILLGRAQAALKPYGLTFA
+RYELLALLNFSREKRMRMSKASALLQVHPTSVTNAVDRLEAAGLVERTPHESDRRALVLA
+LTDEGRRVAVAATETLNAEVFGRSGFDPADVDTLIDVLGRFRAEAGDFEADGPDAGAPAT
+AEHTSS
+>TT9_LFPAFLNI_00249
+MK-KPPLAQDPIREAARNWERHGWGDVARPMAAITSIMRAQQILLGRAQAALKPYGLTFA
+RYELLALLNFSREKRMRMSKASALLQVHPTSVTNAVDRLEAAGLVERTPHESDRRALVLA
+LTDEGRRVAVAATETLNAEVFGRSGFDPADVDTLIDVLGRFRAEAGDFEADGPDAGAPAT
+AEHTSS
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000238.fa

@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00136
+MAIHPVDATLQAAKIDPEERTERLQGVKLDGAGWKYALGRAFKEFGKDGGTDLAAKLTYF
+MVLSLAPSLLAVFSILSLVLASNRGAIDDLMAQMTGLVPGEYQPLVTDLVTTMSESASGG
+GGIVALVVGILTALWSASAYVKAFNRSVNTVYGYEEGRGFVKLTLSNLLTTLIMIVGIVV
+VLISLALNRSLVDGFLAPIAGPLGMTGAVNFLSDTFLPIWAWVKWPVVVVILLLLIATLY
+YTTPNVRKPSFNLFGPGNVFALVGMVLAAVGLSVYFTQFAGYSAYGAIGTIMALLFALWI
+FNIVLLLGVEIDAEVERAKQLVAGLPAEEAVRLPPKDASALEKRVEKQTALQERGYELRA
+THED------------------------R
+>KBS0714_MOLHKGIG_00235
+MAIHPVDATLEAAKIDPDQRAERLKGVKLDGAGWKYALTRALKEFGNDGGTDLAAKLTYY
+LVLSLAPSLLAVFSILSLVLASNRGAIDDLLGELTGLVPSDYQPLVTNLVTTMSDSAGSG
+GGIIALIIGIATALWSASAYVKAFNRSANTVYGYEEGRGLVKLTLTNLLTTLILIVGIVV
+VLLSLALNRSLVDGFLQPIAGPLGMTGVVNFLSDTFLPVWAWAKWPVVVVILLVLIATLY
+YTTPNVQKPRFHLFGPGNIVALVGMVLAAVALSVYFTQFAGYSAYGAIGTVMALLFALWI
+FNIVLLLGLEVDAEVERARQLEAGLPAEARVQLPPKDVAGVEKRAEKQTAVEERGYELRA
+VHEG------------------------R
+>KD337_NAFOICDF_00101
+MAIHPVDATLEAARIDPEERTRRLKGVKLDGAGWKYAFTRALKEFGNDGGTDLAAKLTYF
+MVLSLAPALLAVFSILTLVLSSNRSAVDDVVRQLTELVPADYQGVVGDVVDNLLGQA--G
+GGVLALIIGILTALWSASAYVKAFSRASNQVYNYSEGRGFVKLTLTNLVTTVVMLVGIVL
+VLISLALNRSLVDGFLAPIAGPLGMTDAVNFLSDTFLPIWAWLKWPVVVALLLVLIATLY
+YFAPNVKKPSFHMFGPGNIFALVGMALAAVALYFYFTTLAGYSAYGAIGGVMALLFALWI
+FNIVLLLGLEIDTEVERAKQLTAGMPAEDAVKLPPKDVSALEKKVEKQEELEEKGYELRA
+LHDDGSDSDSDEGKGVSRAPRHAAGSHGA
+>SA211_MHAAABBN_02248
+MAIHPVDATLEAAKIDPDQRAERLKGVKLDGAGWKYALTRALKEFGNDGGTDLAAKLTYY
+LVLSLAPSLLAVFSILSLVLASNRGAIDDLLGQLTGLVPSDYQALVTNLVTTMSDSAASG
+GGIIALVIGIATALWSASAYVKAFNRSANTVYGYEEGRGLVKLTLTNLLTTLILIVGIVV
+VLISLALNRSLVDGFLQPIAGPLGMTGVVNFLSDTFLPVWAWVKWPVVVLILLLLIATLY
+YTTPNVQKPRFHLFGPGNIVALVGMVLAAVALSVYFTQFAGYSAYGAIGTIMALLFALWI
+FNIVLLLGLEVDAEVERARQLEAGLPAEARVQLPPKDVAGVEKRAEKQTAVEERGYELRA
+VHEG------------------------R
+>TT9_LFPAFLNI_00236
+MAIHPVDATLEAAKIDPDQRAERLKGVKLDGAGWKYALTRALKEFGNDGGTDLAAKLTYY
+LVLSLAPSLLAVFSILSLVLASNRGAIDDLLGQLTGLVPSDYQALVTNLVTTMSDSAASG
+GGIIALVIGIATALWSASAYVKAFNRSANTVYGYEEGRGLVKLTLTNLLTTLILIVGIVV
+VLISLALNRSLVDGFLQPIAGPLGMTGVVNFLSDTFLPVWAWVKWPVVVLILLVLIATLY
+YTTPNVQKPRFHLFGPGNIVALVGMVLAAVALSVYFTQFAGYSAYGAIGTIMALLFALWI
+FNIVLLLGLEVDAEVERARQLEAGLPAEARVQLPPKDVAGVEKRVEKQTTLEERGYELRA
+VHEG------------------------R
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000245.fa

@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_00151
+MTFEDLIGTLNDVIWSLPLIYLCLAVGLYFTVRTMFLQFVNIPDMIRQLREGEDSKDGTSSLQSLMMSLAGRVGMGNIGG
+VATAIAFGGPGAVFWMWAMALLGAATSFIESTLGQIYKERDRDTGEYRGGPAYYFTKAYSHKPWGKALVVYGVLFAIVTI
+FATSYFLPGVQANGVAAAVEQAWNVEPWIVAVAMVILLAFIVLGGVKRIATFAVYVVPVMAVLYIVLALIILVLNADQIP
+VVFGSIFSSAFGMDAVFGAIVGLAIQWGVRRGVYSNEAGQGTGPHAAAAAEVSHPAKQGFVQAFAVYIDTLFVCSATAFI
+IISTGAYRVYEGESEAGAVIFEGGSLPATASVGPAYVQSGFDAMFSGFGPTFVAVALAFFAFTTIVAYYYMAEVNLVFIT
+RNFSNPLFRRVALRALQGLILVSVAYGAVATTGAAWGLGDIGVGSMAWLNIIGILLLQGPALKALKDFRAQKRQGLDPQF
+DPRPLGIHNATFWEERADGRITPGVAG--TAPTPVVDADG-GSPRA
+>KBS0714_MOLHKGIG_00230
+MSFADLITAVNDVIWSPALIWLCLIVGLYFTIRTMFLQFVNIPDMVKQLREGQDSADGTSSLQSLMMSLAGRVGMGNIGG
+VATAIAFGGPGAVFWMWVMALLGAATSFIESTLGQIYKERDPDTGEYRGGPAYYFEKAYKHTAAAPAFKVYAILFAVVTV
+FATSYFLPGVQANGVAAAAGEAWAVPAWVVALAMVILLAFIVLGGVKRIATFAVYVVPVMAALYIILALIVLFLNFDQIP
+EVFGSIFASAFGVHAVFGAILGLAIQWGVKRGIYSNEAGQGTGPHAAAAAEVSHPAKQGFVQAFAVYIDTLFVCSATAFI
+IISTGAYRVYSDESGSG-LLFEGIVAP-TASEGPAFVQTGFDAMFTGFGPTFVAVALAFFAFTTIVAYYYMAEVNIVFLT
+RNLRNGMVRRVVLRFLQALILVSVAYGAVATTGAAWGLGDIGVGSMAWLNILGILVLQGPALKALKDYRAQKRQGLDPQF
+DPRPLGIRNADFWEHRADGLITQGVAG--TAEHPIV-AEG-GAHRA
+>KD337_NAFOICDF_00108
+MSFADLVTEINDVIWSPALIWLCLIVGLYFTVRTMFLQFVNIPDMVKQLREGEDSADGTSSLQSLMMSLAGRVGMGNIGG
+VATAIAFGGPGAVFWMWVMALLGAATSFIESTLGQIYKERDPDTGEYRGGPAYYFEKAYRHTAAGGAFKVYAILFAIVTV
+FATSYFLPGVQANGVAAAMEQAWSLPPWVAAVGMVILLAFIVLGGVKRIATFAVYVVPIMAIAYIILALVVLFMNWEQIP
+EVFGTIFSSAFGTHAVFGAILGLAIQWGVKRGVYSNEAGQGTGPHAAAAAEVSHPAKQGFVQAFAVYIDTLFVCSATAFI
+IISTGAYRVFEGESETGRVLFEGGTLPVTASVGPAFVQSGFDAVFAGFGPTFVAIALAFFAFTTIVAYYYMAEVNLVYLT
+RTLRNGTVRRVALRLLQALILVSVAYGAVATTGAAWGLGDIGVGSMAWLNILGILVLQGPALKALKDYRAQKKQGLDPQF
+DPRPLGIKNADFWEHRADGLITQGVGGLSTDVRADT-ADGAGSHRA
+>SA211_MHAAABBN_02243
+MSFADLITAVNDVIWSPALIWLCLIVGLYFTIRTMFLQFVNIPDMVKQLREGQDSADGTSSLQSLMMSLAGRVGMGNIGG
+VATAIAFGGPGAVFWMWVMALLGAATSFIESTLGQIYKERDPDTGEYRGGPAYYFEKAYKHTAAAPAFKVYAILFAVVTV
+FATSYFLPGVQANGVAAAVGEAWAVPAWVVALAMVILLAFIVLGGVKRIATFAVYVVPVMAALYIILALIVLFLNFDQIP
+EVFGSIFASAFGVHAVFGAILGLAIQWGVKRGIYSNEAGQGTGPHAAAAAEVSHPAKQGFVQAFAVYIDTLFVCSATAFI
+IISTGAYRVYSDESGSG-LLFEGIVAP-TASEGPAFVQTGFDAMFTGFGPTFVAVALAFFAFTTIVAYYYMAEVNLVFLT
+RNLRNGMVRRVVLRFLQALILVSVAYGAVATTGAAWGLGDIGVGSMAWLNILGILVLQGPALKALKDYRAQKRQGLDPQF
+DPRPLGIRNADFWEHRADGLITQGVAG--TAEHPIV-AEG-GAHRA
+>TT9_LFPAFLNI_00231
+MSFADLITAVNDVIWSPALIWLCLIVGLYFTIRTMFLQFVNIPDMVKQLREGQDSADGTSSLQSLMMSLAGRVGMGNIGG
+VATAIAFGGPGAVFWMWVMALLGAATSFIESTLGQIYKERDPDTGEYRGGPAYYFEKAYKHTAAAPAFKVYAILFAVVTV
+FATSYFLPGVQANGVAAAVGEAWAVPAWVVALAMVILLAFIVLGGVKRIATFAVYVVPVMAVLYIILALIVLFLNFDQIP
+EVFGSIFASAFGVHAVFGAILGLAIQWGVKRGVYSNEAGQGTGPHAAAAAEVSHPAKQGFVQAFAVYIDTLFVCSATAFI
+IISTGAYRVYSDGSGSG-LLFEGIVSP-TASEGPAFVQTGFDAMFSGFGPTFVAVALAFFAFTTIVAYYYMAEVNIVFLT
+RNLRNGMVRRVALRFLQALILVSVAYGAVATTGAAWGLGDIGVGSMAWLNILGILVLQGPALKALKDYRAQKRQGLDPQF
+DPRPLGIRNADFWEHRADGLITQGVAG--TAEHPIV-AEG-GAHRA

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000252.fa

@@ -0,0 +1,11 @@
+>AS2_ACLBLIBL_00166
+MDRSNEIPPELQGLDWGEDDAPRRRRPLITLVAWLCIIGLVLGVAAGLFSIL
+>KBS0714_MOLHKGIG_00215
+MDRELRTPPELEGVDW-HDDAPRRPRPIVTLVAWIAILGLVLSVGAGIFSAF
+>KD337_NAFOICDF_00119
+M---ADLPPELEFAEFDDDPRPSAPSPWVRVLAVVVLLGLVGSLAAGLFGGI
+>SA211_MHAAABBN_02208
+MDRELRTPPELEGVDW-HDDAPRRPRPIVTLVAWIAILGLVLSVGAGIFSAF
+>TT9_LFPAFLNI_00215
+MDRELRTPPELEGVDW-HDGAPRRPRPIVTLVAWIAILGLVLSVGAGIFSAF
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000259.fa

@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00182
+M-PRQNPT-----GRARRGLPLAALGAAAALVLTGCGASGEDASAAWDRARTQLEETDSV
+RMVTELRSDAPQAGNRTPESVDLSGPVDGSSMRYVSTYEDGDLITRDESRVVDGTAYSRF
+TVERRGA-SGEDRPAYVERWTAA-PHTGDPRATGMGAMVSSLLGSLPESGGLEDVAVDAD
+GIRRSGQDAVRYVLDEPLSVADDGVAMTAFTVSEEDGRLLTVETESAGTKAVVTVSEMGD
+VEPLQAPPSDEVLPQQQGQGAPGAVPPGGAPQDGTAPGGTPAEPVPPTDG
+>KBS0714_MOLHKGIG_00209
+MRQRQTQT-----RRTRRGLSLAALG-AAALLLTGC-ASGDDAPGAWDRARTQLEEADSV
+RMVTELRSEAPSNGRAVPDAVDISGPVDGSSMRYVSVYKDDGLITRDESRIVDGTAYSRF
+TVERVGA-SGEDHPAYAERWTAT-PYEGDPSATGMGAMVSSLLGSLPESGGLDDVEADAD
+GIRRSGQDAIRYVLDEPVSGPQEGVELTAFTVSKEDGRLLTVETESAGTKAVVTLSEMGG
+VDPVQAPPADEVLKQD---------------------------------G
+>KD337_NAFOICDF_00128
+MRPTTPRTPAPHGGARRRALSLAALGAAAALSLSACGASGEDASAAWDAARTQLQDASSV
+RLTTEARNDSGAA-PGTPDGVEIAGDVHSSDLSYTGVFRTDGYITRDESRTVGGQRYERF
+TLEQPGGVSGEGRPAFAEKWKKAEPLPGD---ASMRSILDGVLTAVPQAGALQGADVRAT
+DIRRQGRDATRYVLDTPVKGGTTDSSLTAFTVADDDGTLLTVETTGPGTRGTVTFSDWNA
+VEPVTA-PATEDMAQDTA-----------------------------TAK
+>SA211_MHAAABBN_02202
+MRQRQTQT-----RRTRRGLSLAAVG-AAALLLTGC-ASGDDAPGAWDRARTQLEEADSV
+RMVTELRSEAPSNGRAVPDSVDISGPVDGSSMRYVSVYQDDGLITRDESRIVDGTAYSRF
+TVERAGA-SGEDRPAYVERWTAT-PYESDPRATGMGAMVSSLLGSLPESGGLDDVEADAD
+GIRRSGQDAIRYVLDEPVSGPQEGVELTAFTVSKEDGRLLTVETESAGTKAVVTLSEMGG
+VDPVQAPPADEVLKQD---------------------------------G
+>TT9_LFPAFLNI_00209
+MRQRQTQT-----RRTRRGLSLAAVG-AAALLLTGC-ASGDDAPGAWDRARTQLEEADSV
+RMVTELRSEAPSNGRAVPDSVDISGPVDGSSMRYVSVYQDDGLITRDESRIVDGTAYSRF
+TVERAGA-SGEDRPAYVERWTAT-PYESDPRATGMGAMVSSLLGSLPESGGLDDVEADAD
+GIRRSGQDAIRYVLDEPVSGPQEGVALTAFTVSKEDGRLLTVETESAGTKAVVTLSEMGE
+VDPVQAPPADEVLKQD---------------------------------G
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000261.fa

@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00188
+MTSYADLAARFADAFDAVGHGERAREAGRHLPFAVQRGLQEAGFGRVSVPEVAGGDGASH
+ETALRLLMDLAARDVNTAHLWRSHLVFVATVLDQVPAAAEPWLERVVAGDWAGSALAER-
+GTAAPGRAATMAERDEGGTWVVTGEKYYATGSAFATWTIATVGVDGDGLVSRRNSKRAGG
+VVREPGRAVAVVRVRQPRVRVKDDWDGFGQRLTATGSVVLDGAAAEALLEVPRREGPVPV
+LQEASLLALQVGVGRAALAEGVELLRARRRTFNTGTEALPAQDPQLLEIMGRLAGQLAAA
+EALVRQVGGLMDEAEE----RGTAGDDDGAARLMEEAMVAAYRAQAVVPDAVLGVCTGIF
+DTLGASATSAALQLDRHWRNARTLATHDPAAFKVRMAGDHLVNGTPPTAYTSAGVVDD-D
+>KBS0714_MOLHKGIG_00203
+MTTYATLAARYADAFDSVAHGERAREAGRHLPFAALGELQAAGFGKVGVPEDAGGEGGGS
+ETVLRLLMDLAARDVNTAHVWRSHLVFIATAMDQAPARRERWLRHIVDGDWAGSALAERA
+GGAAPGRAATLASRDEGGTWVVRGQKYYATGSAFATWTAATVGIEGADLVSRRNSKRAGG
+AVREPDRAVAVVRVRQPRVGIKDDWDGFGQRLTATGSVVLDDAAAEELLEVPRQDGPVPV
+LMEATLLALQAGIGRAALTEGTQLLRQRRRTFNTGTAALPKDDPQLLEIMGQLAGRQAAA
+ELMVREIGRLLDEGQDGADGAGPAEADVVAAS--AEAMAAAYRAQAVVPEAVLEVCTRIF
+DTLGASATSATLRLDRHWRNARTLATHDPAAFKVRMAGDWLVNGTPPTAYTSAGEVPEGD
+>KD337_NAFOICDF_00143
+MTTYATLAARYADAFDSVAHGERAREAGRHLPFAALGELQAAGFGKVGVPVDAGGEGGGS
+ETVLRLLMDLAARDVNTAHVWRSHLVFIATAMDQAPARRDRWLRHIVAGDWAGSALAERA
+GGAAPGRAATLASRDEGGTWVVRGQKYYATGSAFATWTAATVGIEGADLVSRRNSKRAGG
+AVREPDRAVAVVRVRQPRVGIKDDWDGFGQRLTATGSVVLDDAAAEELLEVPRQDGPVPV
+LMEATLLALQAGIGRAALTEGTQLLRKRRRTFNTGTAALPKDDPQLLEIMGQLAGRQAAA
+ELMVREIGRLLDEGEDGADGAGLAEADVVAAS--AEAMAAAYRAQAVVPEAVLEVCTRIF
+DTLGASATSATLRLDRHWRNARTLATHDPAAFKVRMAGDWLVNGTPPTAYTSAGDAQD--
+>SA211_MHAAABBN_02198
+MTTYATLAARYADAFDSVAHGERAREAGRHLPFAALAELQAAGFGKVGVPEDAGGEGGGS
+ETVLRLLMDLAARDVNTAHVWRSHLVFIATAMDQAPARRERWLRHIVDGDWAGSALAERA
+GGAAPGRAATLASRDEGGTWVVRGQKYYATGSAFATWTAATVGIEGADLVSRRNSKRAGG
+AVREPDRAVAVVRVRQPRVGIKDDWDGFGQRLTATGSVVLDDAAAEELLEVPRQDGPVPV
+LMEATLLALQAGIGRAALTEGTQLLRQRRRTFNTGTAALPKDDPQLLEIMGQLAGRQAAA
+ELMVREIGRLLDEGQDGADGAGPAEADVVAAS--AEAMAAAYRAQAVVPEAVLEVCTRIF
+DTLGASATSATLRLDRHWRNARTLATHDPAAFKVRMAGDWLVNGTPPTAYTSAGEVPEGD
+>TT9_LFPAFLNI_00205
+MTTYATLAARYADAFDSVAHGERAREAGRHLPFAALGELQAAGFGKVGVPVDAGGEGGGS
+ETVLRLLMDLAARDVNTAHVWRSHLVFIATAMDQAPARRERWLRHIVDGDWAGSALAERA
+GGAAPGRAATLASRDEGGTWVVRGQKYYATGSAFATWTAATVGIEGADLVSRRNSKRAGG
+AVREPDRAVAVVRVRQPRVGIKDDWDGFGQRLTATGSVVLDDAAAEELLEVPRQDGPVPV
+LMEATLLALQAGIGRAALTEGTQLLRQRRRTFNTGTAALPKDDPQLLEIMGQLAGRQAAA
+ELMVREIGRLLDEGEDGADGAGPAEADVVAAS--AEAMAAAYRAQAVVPEAVLEVCTRIF
+DTLGASATSATLRLDRHWRNARTLATHDPAAYKVRMAGDWLVNGTPPTAYTSAGEVPEGD
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000263.fa

@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00198
+MT----------------------------------VLDRPGGRTAVGLIVPALLLLLWW
+ALTAAGVFSGVQLPPPAWVAEAAVDLAARGTLWHHIAISVQRVLVGFLIGGALGLLVGSV
+LGLSRWADALLAPTIGALRAVPSLAWVPLLILWMQIGEESKVTLIAIGAFFPVFTTVYAA
+LRHVDPHLVEAGRAYGYHGVRLLGTVQLPAVVPAMFSGLRLALAQAWLFLVAAELIASSM
+GLGFLLTDSQNNGRTDRLILAIILLAVLGKISDWLLGFVERWAVRRWA
+>KBS0714_MOLHKGIG_00204
+MSAALTTPAATTGPEARERSGHDDGDTGARRRQRPRVLDRPGARAVVGLAAPAVLLVLWW
+AVTAAGLLSAVQLPSPGAVLSAGVNLLERGDLWLHVGISTQRVLLGFLLGAALGLAVGSA
+LGLSRWADALFAPLIGALRAVPSLAWVPLLILWMQIGEESKVTLIAIGAFFPVFTTVYAA
+LRHVDPHLVEAGRAFGYHGLSLLRTVQLPAVVPAVFSGLRLALAQAWLFLVAAELIASSM
+GLGFLLTDSQNNGRTDRLILAIILLAVLGKLTDWLLGLLERRALRRWA
+>KD337_NAFOICDF_00140
+MSTALTTPAATTGPEARERSGHDDGGTGARRRQRSRVLDRPGARAVVGLAAPAVLLVLWW
+AVTAAGLLSAVQLPSPGAVLSAGVNLLERGDLWLHVGISTQRVLLGFLLGAALGLAVGSA
+LGLSRWADALFAPLIGALRAVPSLAWVPLLILWMQIGEESKVTLIAIGAFFPVFTTVYAA
+LRHVDPHLVEAGRAFGYHGLSLLRTVQLPAVVPAVFSGLRLALAQAWLFLVAAELIASSM
+GLGFLLTDSQNNGRTDRLILAIILLAVLGKLTDWLLGLLERRALRRWA
+>SA211_MHAAABBN_02199
+------------------------------------MLDRPGTRAAVGLAAPAVLLVLWW
+AVTAAGLLSAVQLPSPGAVLSAGVNLLERGDLWLHVGISTQRVLLGFLLGAALGLAVGSA
+LGLSRWADALFAPLIGALRAVPSLAWVPLLILWMQIGEESKVTLIAIGAFFPVFTTVYAA
+LRHVDPHLVEAGRAFGYHGLSLLRTVQLPAVVPAVFSGLRLALAQAWLFLVAAELIASSM
+GLGFLLTDSQNNGRTDRLILAIILLAVLGKLTDWLLGLLERRALRRWA
+>TT9_LFPAFLNI_00206
+------------------------------------MLDRPGTRAAVGLAAPAVLLVLWW
+AVTAAGLLSAVQLPSPGAVLSAGVNLLERGDLWLHVGISTQRVLLGFLLGAALGLAVGSA
+LGLSRWADALFAPLIGALRAVPSLAWVPLLILWMQIGEESKVTLIAIGAFFPVFTTVYAA
+LRHVDPHLVEAGRAFGYHGLSLLRTVQLPAVVPAVFSGLRLALAQAWLFLVAAELIASSM
+GLGFLLTDSQNNGRTDRLILAIILLAVLGKLTDWLLGLLERRALRRWA
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000274.fa

@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_00217
+MAVGFTQHDPSRTIRAPRGTELSAKSWQTEAPLRMLMNNLDPEVAERPEDLVVYGGTGRAARSWEAYDAIVATLKDLEED
+ETLLVQSGKPVGVFRTNKWAPRVLIANSNLVGDWATWPEFRKLEAEGLMMYGQMTAGSWIYIATQGILQGTYETFAAIGR
+KRYDGSLKGTLTLTGGCGGMGGAQPLAVTLNGGACLIVDVSEGRLRRRMGKRYLDEVVTDIDKAVERVMQAKRDGEAVSV
+GLVGNAAEVFPELLERQKRGEIEIDIVTDQTSAHDPLSYLPIEIDEADWQAEAEGDPETFTKKAQESMARQVEAMVGFQD
+IGAEVFDYGNSIRDEARKAGYSRAFEFPGFVPAYIRPLFCEGLGPFRWAALSGDPEDIRVTDEALKELFPENEHLHRWLD
+GAAEFVEFEGLPARICWLGYGERHKAGLLFNQLVAEGKVKAPIVIGRDHLDSGSVASPYRETESMLDGSDAIADWPLLNA
+LTATSSGATWVSIHHGGGVGIGRSIHAGQVGLADGTELAAAKLEALLTNDPGMGVIRHVDAGYSRAAEIAAERGVRVPME
+ATIRD
+>KBS0714_MOLHKGIG_00184
+MAVGFTQHDPSRTIRAPRGTELSAKSWQTEAPLRMLMNNLDPEVAERPEDLVVYGGTGRAARSWEAYDAIVATLKDLEED
+ETLLVQSGKPVGVFRTNKWAPRVLIANSNLVGDWATWPEFRELEAEGLMMYGQMTAGSWIYIATQGILQGTYETFAAIGR
+KRYDGSLQGTLTLTGGCGGMGGAQPLAVTLNGGVCLIVDVSEDRLRRRMGKRYLDEVETDIDKAVERVMQAKNDGEAVSV
+GLVGNAAEVFPELLERQKAGTVEIDIVTDQTSAHDPLSYLPIEIDEKDWHAEAEADPDTFTKKAQESMARQVEAMVGFQD
+IGAEVFDYGNSIRDEARKAGYSRAFEFPGFVPAYIRPLFCEGLGPFRWAALSGDPEDIRVTDEALKELFPENEHLHRWLD
+GAAEFVEFEGLPARICWLGYGERHKAGLLFNQLVAEGKVKAPIVIGRDHLDSGSVASPYRETESMLDGSDAIADWPLLNA
+LTATSSGATWVSIHHGGGVGIGRSIHAGQVGVADGTELAAAKLEALLTNDPGMGVIRHVDAGYSRAAEVAKERGVRVPME
+ATIRD
+>KD337_NAFOICDF_00162
+MAAGFTQHDPSRTIRAPRGTELNAKSWQTEAPLRMLMNNLDPEVAERPEDLVVYGGTGRAARSWEAFDAIVETLKDLEED
+ETLLVQSGKPVGVFRTNVWAPRVLIANSNLVGDWADWKTFRELEAEGLMMYGQMTAGSWIYIATQGILQGTYETFAAIGR
+KKYDGTLKGTLTLTGGCGGMGGAQPLAVTLNGGVCLIVDVSEERLRRRMGKRYLHEVETDIDAAIARVMQAKRDGEAVSV
+GLVGNAAEVFPELLKRQKAGEVEIDIVTDQTSAHDPLSYLPIEIEEKDWHAEAEADPDTFTKKAQESMARQVEAMVGFQD
+IGAEVFDYGNSIRDEARKAGYSRAFEFPGFVPAYIRPLFCEGLGPFRWAALSGDPEDIRVTDEALKELFPENEHLHRWLD
+GAAEFVEFEGLPARICWLGYGERHKAGLLFNQLVAEGKVKAPIVIGRDHLDSGSVASPYRETESMLDGSDAIADWPLLNA
+LTATSSGATWVSIHHGGGVGIGRSIHAGQVGLADGTELAAAKLTALLTNDPGMGVIRHVDAGYSRAVEVAAERGVRIPME
+PTVRD
+>SA211_MHAAABBN_02180
+MAEGFTQHDPSRTIRAPRGTELSAKSWQTEAPLRMLMNNLDPEVAERPEDLVVYGGTGRAARSWEAYDAIVATLKDLEED
+ETLLVQSGKPVGVFRTNKWAPRVLIANSNLVGDWATWPEFRKLEAEGLMMYGQMTAGSWIYIATQGILQGTYETFAAIGR
+KRYDGSLQGTLTLTGGCGGMGGAQPLAVTLNGGVCLIVDVSEDRLRRRMGKRYLDEVETDIDKAVERVMQAKRDGEAVSV
+GLVGNAAEVFPELLERQKAGTVEIDIVTDQTSAHDPLSYLPIEIDEKDWHAEAEADPDTFTKKAQESMARQVEAMVGFQD
+IGAEVFDYGNSIRDEARKAGYSRAFEFPGFVPAYIRPLFCEGLGPFRWAALSGDPEDIRVTDEALKELFPENEHLHRWLD
+GAAEFVEFEGLPARICWLGYGERHKAGLLFNQLVAEGKVKAPIVIGRDHLDSGSVASPYRETESMLDGSDAIADWPLLNA
+LTATSSGATWVSIHHGGGVGIGRSIHAGQVGVADGTELAAAKLEALLTNDPGMGVIRHVDAGYSRAVEVAAERGVRVPME
+ATIRD
+>TT9_LFPAFLNI_00181
+MAVGFTQHDPSRTIRAPRGTELSAKSWQTEAPLRMLMNNLDPEVAERPEDLVVYGGTGRAARSWEAYDAIVATLKDLEED
+ETLLVQSGKPVGVVKTNVWAPRVLIANSNLVGDWADWKTFRELEAEGLMMYGQMTAGSWIYIATQGILQGTYETFAAIGR
+KRYDGSLKGTLTLTGGCGGMGGAQPLAVTLNGGVCLIVDVSEDRLRRRMGKRYLDEVETDIERAVERVMQAKRDGEAVSV
+GLVGNAAEVFPELLERQKAGTVEIDIVTDQTSAHDPLSYLPIEIDEKDWHAEAEADPDTFTKKAQESMARQVEAMVGFQD
+IGAEVFDYGNSIRDEARKAGYSRAFEFPGFVPAYIRPLFCEGLGPFRWAALSGDPEDIRVTDAALKELFPENEHLHRWLD
+GAAEFVEFEGLPARICWLGYGERHKAGLLFNQLVAEGKVKAPIVIGRDHLDSGSVASPYRETESMLDGSDAIADWPLLNA
+LTATSSGATWVSIHHGGGVGIGRSIHAGQVGVADGTELAAAKLEALLTNDPGMGVIRHVDAGYSRAAEVAKERGVRVPME
+ATIRD