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  1. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000001_tree_id.txt +2 -0
  2. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000002_tree_id.txt +2 -0
  3. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000007_tree_id.txt +2 -0
  4. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000008_tree_id.txt +2 -0
  5. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000009_tree_id.txt +2 -0
  6. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000010_tree_id.txt +2 -0
  7. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000011_tree_id.txt +2 -0
  8. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000013_tree_id.txt +2 -0
  9. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000017_tree_id.txt +2 -0
  10. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000018_tree_id.txt +2 -0
  11. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000021_tree_id.txt +2 -0
  12. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000022_tree_id.txt +2 -0
  13. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000023_tree_id.txt +2 -0
  14. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000024_tree_id.txt +2 -0
  15. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000025_tree_id.txt +2 -0
  16. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000026_tree_id.txt +2 -0
  17. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000031_tree_id.txt +2 -0
  18. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000032_tree_id.txt +2 -0
  19. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000033_tree_id.txt +2 -0
  20. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000034_tree_id.txt +2 -0
  21. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000035_tree_id.txt +2 -0
  22. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000036_tree_id.txt +2 -0
  23. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000039_tree_id.txt +2 -0
  24. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000040_tree_id.txt +2 -0
  25. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000044_tree_id.txt +2 -0
  26. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000046_tree_id.txt +2 -0
  27. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000047_tree_id.txt +2 -0
  28. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000049_tree_id.txt +2 -0
  29. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000050_tree_id.txt +2 -0
  30. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000051_tree_id.txt +2 -0
  31. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000055_tree_id.txt +2 -0
  32. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000058_tree_id.txt +2 -0
  33. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000060_tree_id.txt +2 -0
  34. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000065_tree_id.txt +2 -0
  35. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000066_tree_id.txt +2 -0
  36. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000067_tree_id.txt +2 -0
  37. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000068_tree_id.txt +2 -0
  38. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000069_tree_id.txt +2 -0
  39. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000072_tree_id.txt +2 -0
  40. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000073_tree_id.txt +2 -0
  41. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000080_tree_id.txt +2 -0
  42. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000081_tree_id.txt +2 -0
  43. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000084_tree_id.txt +2 -0
  44. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000085_tree_id.txt +2 -0
  45. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000086_tree_id.txt +2 -0
  46. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000087_tree_id.txt +2 -0
  47. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000091_tree_id.txt +2 -0
  48. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000095_tree_id.txt +2 -0
  49. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000097_tree_id.txt +2 -0
  50. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000100_tree_id.txt +2 -0
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000001_tree_id.txt ADDED
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+ (((((((((((1_1025:0.00000000,1_2210:0.00000000):0.00000000,1_577:0.00000000):0.00337008,0_2445:0.00026392):0.00114750,0_703:0.00340150):0.02635533,(0_2612:0.00526519,1_578:0.00326081):0.03380717):0.00788706,(0_673:0.02471196,((1_1155:0.00000050,1_1969:0.00000050):0.00046683,(4_2137:0.00000050,4_2154:0.00000050):0.00074617):0.03187404):0.00619406):0.02887453,(((1_2165:0.00349121,((1_2205:-0.00203685,(1_2168:0.00128162,(1_2170:0.02169909,(1_1452:0.52640554,1_2004:0.03110246):0.06102341):0.11691813):0.00811785):0.01256939,(1_1351:0.00000000,(1_687:0.00000000,(1_564:0.00000000,1_166:0.00000000):0.00000000):0.00000000):0.00016443):0.00129351):0.02190863,1_598:0.02425093):0.06665167,((1_1346:-0.02082854,(3_1088:0.20261045,4_1936:-0.02437645):0.02449054):0.02442171,4_1295:-0.02098121):0.35285918):0.04109445):0.09456086,0_876:0.18610125):0.07857963,1_1451:0.18399885):0.18600090,3_1087:0.31742073):0.04899627,1_2171:0.24689482,1_2003:0.10455618);
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experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000002_tree_id.txt ADDED
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+ ((((((3_751:0.00123687,((((2_1798:0.00000000,(2_1758:0.00000000,2_2156:0.00000000):0.00000000):0.00403270,((((1_1024:0.02079803,0_2281:-0.00002603):0.00002603,0_739:-0.00002603):0.00002603,0_1278:-0.00002603):0.00147652,4_1486:0.00040598):0.00161499):0.00138189,(0_1255:0.00212247,(0_1293:0.00000000,0_1288:0.00000000):0.00353253):0.02689702):0.00372999,(((3_304:-0.00001277,(3_2208:-0.00001277,(3_1284:-0.00001277,(0_2571:0.00000000,0_2297:0.00000000):0.02652277):0.00001277):0.00001277):0.00001277,1_1339:-0.00001277):0.00136415,3_1078:0.00997735):0.00200872):0.00217197):0.00526825,(4_974:0.00622306,(3_316:0.00000000,2_2179:0.00000000):0.00696494):0.01543675):0.00487737,3_1610:0.00804765):0.00139610,2_302:0.04967373):0.00882327,(2_604:0.00000000,2_609:0.00000000):0.00250577):0.00507023,4_1824:0.00000000,4_108:0.00000000);
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experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000007_tree_id.txt ADDED
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+ (((4_1290:0.00250603,(4_565:0.16364407,4_1826:0.00900793):0.01933747):0.01820729,(((1_2016:-0.00009953,(1_993:-0.00009953,(((4_563:0.00000000,4_2145:0.00000000):0.00189142,3_1065:-0.00008342):0.00002009,(((0_1189:0.00131131,(3_972:0.11610363,3_1075:0.01017937):0.00153869):0.00056055,1_1244:-0.00011055):0.00011055,4_1201:-0.00011055):0.00007434):0.00005231):0.00009953):0.00009953,1_149:-0.00009953):0.00136053,3_1073:0.00138604):0.00224471):0.00276396,1_1336:0.00089900,3_1971:0.00272400);
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experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000008_tree_id.txt ADDED
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+ (((((4_2104:0.00000000,(3_327:0.00000000,(3_80:0.00000000,(3_1350:0.00000000,(4_1300:0.00000000,(4_581:0.00000000,(3_2226:0.00000000,3_974:0.00000000):0.00000000):0.00000000):0.00000000):0.00000000):0.00000000):0.00000000):0.00000000,1_685:0.00000000):0.00098700,(4_971:0.00000000,(1_2166:0.09516164,4_1111:-0.00482164):0.00482164):0.00098700):0.15460173,1_1350:0.09274169):0.10759912,1_1449:0.05673154,1_2164:0.69997046);
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experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000009_tree_id.txt ADDED
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experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000010_tree_id.txt ADDED
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experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000011_tree_id.txt ADDED
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+ ((((1_584:0.01836466,3_1719:0.02965334):0.13164373,(((((3_323:0.00000000,3_1729:0.00000000):0.00000000,1_591:0.00000000):0.01062291,0_701:0.01093009):0.07869023,(1_2013:0.01805192,4_1942:0.04409708):0.13257427):0.06241858,(0_709:0.04496850,0_2314:0.07097450):0.03310580):0.03865239):0.02924489,4_1945:0.71690827):0.62638223,3_334:0.00684395,3_753:0.01135805);
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experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000013_tree_id.txt ADDED
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+ ((((3_1715:0.00214371,((0_688:0.47567477,0_2441:0.29584323):0.36602046,((3_325:0.12568084,(4_864:0.02020567,2_1844:0.03139033):0.11514616):0.05253490,4_1490:0.31001335):0.11818860):0.08849507):0.04192191,0_2226:-0.02265507):0.03162807,0_2557:-0.02489720):0.08779720,0_2577:0.01641084,0_2440:0.16014216);
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experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000017_tree_id.txt ADDED
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experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000018_tree_id.txt ADDED
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experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000021_tree_id.txt ADDED
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experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000022_tree_id.txt ADDED
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experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000023_tree_id.txt ADDED
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experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000024_tree_id.txt ADDED
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experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000025_tree_id.txt ADDED
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experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000026_tree_id.txt ADDED
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experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000031_tree_id.txt ADDED
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experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000032_tree_id.txt ADDED
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2
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experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000033_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ ((((1_606:0.00000000,4_575:0.00000000):0.02581813,(0_387:0.01433900,2_2146:0.01267200):0.01285637):0.86902513,2_434:1.31047688):0.14546663,0_1305:1.37118763,0_1228:0.94384438);
2
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experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000034_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ ((((2_631:0.00000000,2_2164:0.00000000):0.01171738,(0_396:0.03020512,2_311:0.02041888):0.00376613):0.00558413,4_1298:0.00511887):0.00439462,1_1349:0.00028712,3_1091:0.01393088);
2
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experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000035_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ (((2_632:-0.00373256,(2_312:0.08377256,2_2165:-0.00373256):0.00373256):0.00575931,0_397:0.01965469):0.01033281,(1_1353:0.13095931,4_1302:0.36028569):0.04558656,3_1092:0.00071144);
2
+
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000036_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ (((0_470:0.01530531,(2_417:0.00631569,4_2124:0.00430931):0.00174669):0.00470219,(0_475:0.13837944,1_2214:0.72640956):0.12850119):0.00616081,1_2192:0.00831700,3_1902:0.00431900);
2
+
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000039_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ ((3_1752:0.01924019,(1_2033:0.03951137,0_666:0.05828863):0.00386081):0.02766956,((4_1971:0.76443844,2_2050:0.70680156):0.15742419,2_583:0.29333481):0.28745206,2_582:0.33358244);
2
+
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000040_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ ((((2_645:1.81551912,4_1968:-0.17046712):0.19431437,0_676:-0.13629337):0.15651787,(3_1744:0.01053269,1_2028:0.01525831):0.03120325):0.30734975,0_1283:0.00842769,2_2185:0.03767031);
2
+
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000044_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ ((((3_333:0.01479306,3_318:-0.00001406):0.00001456,1_155:-0.00001406):0.00001456,1_1026:-0.00001406):0.00631431,(4_975:-0.00002819,0_708:0.00841419):0.00002819,3_754:-0.00002819);
2
+
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000046_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ ((3_1665:0.00746079,(1_1944:0.01149893,4_1883:0.00327607):0.00149267):0.03924424,((4_165:0.39007030,4_166:0.81894370):0.57450385,2_756:0.06378426):0.02032753,0_818:0.03957108);
2
+
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000047_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ (((((0_989:0.88923460,2_923:0.56510340):0.02650430,2_851:0.78702329):0.29923729,4_708:0.26459935):0.16959534,2_774:0.12521059):0.06452505,0_836:0.06745370,3_1646:0.20090630);
2
+
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000049_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ ((2_1003:0.05988475,(((1_1720:0.00569369,4_1649:0.00439331):0.00177587,3_1437:0.00726013):0.06023988,0_1078:0.07905762):0.00863038):0.66502275,1_806:0.44481738,1_807:0.13195263);
2
+
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000050_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ ((1_1359:0.00413422,3_1098:-0.00013422):0.00013422,(((1_164:1.17994078,2_2178:1.20931222):1.03587084,2_1370:-0.06368284):0.13228547,0_1459:0.00633928):0.05861997,4_1308:-0.00013422);
2
+
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000051_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ (((0_1678:0.66886616,3_862:-0.01859916):0.03596197,4_1084:-0.02181497):0.02542697,((0_1677:0.27866528,2_300:0.93003472):0.07313222,2_1575:0.46061678):0.38494822,1_1134:-0.01789897);
2
+
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000055_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ ((((2_401:0.04619419,1_2200:0.03587081):0.00460275,4_2132:0.01101675):0.09859525,2_405:1.64472925):0.19826725,(4_2118:0.00688531,1_2185:-0.00064731):0.00196763,3_1898:0.01185187);
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+
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000058_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ ((((4_96:0.00278448,3_2065:-0.00001948):0.00085434,1_101:0.00192814):0.01772657,0_270:0.00792683):1.08985804,2_217:-1.01211388,0_31:1.72518988);
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+
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000060_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ (((1_278:0.01226176,(3_2251:0.00535373,4_284:0.00418227):0.00508912):0.05183981,0_58:0.05807560):0.03715005,1_1898:2.40110575,2_37:0.15497425);
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experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000065_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ ((((2_136:0.01247692,4_193:0.01313708):0.10611384,0_185:0.15742458):0.38237198,0_84:0.78509765):0.15572245,2_123:1.16084463,0_83:0.85863137);
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experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000066_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ ((1_249:0.00275811,4_248:-0.00038611):0.01250307,((2_70:0.14359512,2_509:0.78097188):0.05206097,0_102:0.14411868):0.05953652,3_2214:0.00953305);
2
+
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000067_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ (4_241:0.00346887,((0_111:0.02766164,(2_2414:0.33228438,2_79:0.08046962):0.06964269):0.03121270,1_241:0.00680102):0.00579598,3_2204:0.00627913);
2
+
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000068_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ ((((4_1892:0.00544775,1_1953:0.00658725):0.00188362,3_1674:0.00615238):0.05153512,2_747:0.02090362):0.12500038,0_807:0.06069962,0_120:1.37125538);
2
+
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000069_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ ((1_227:0.00582243,(3_2191:0.00185525,4_228:0.00135175):0.00552860):0.04819149,(3_90:0.41198038,2_91:0.15001562):0.08036185,0_126:0.02842895);
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+
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000072_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ ((1_1072:0.00724640,4_1022:-0.00042040):0.00042040,((0_153:2.03961412,2_1636:0.10579087):0.08437458,0_1744:0.04286542):0.02328605,3_800:0.00000000);
2
+
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000073_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ ((((0_2156:0.52650587,2_307:0.72564913):0.60167566,0_157:0.04740756):0.15668744,1_208:-0.00000000):0.00000000,3_2152:0.00000000,4_208:0.00000000);
2
+
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000080_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ ((((0_317:0.03592237,0_191:1.90909163):0.06457935,2_259:0.12408396):0.11241423,4_54:0.02107557):0.01065043,1_59:0.00728648,3_2023:0.02848752);
2
+
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000081_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ (1_72:0.00000000,(3_2036:0.00795127,((0_2287:1.34913975,2_244:0.14167525):0.25774774,0_302:0.01884497):0.00309078):0.00241173,4_66:0.00000000);
2
+
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000084_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ (1_49:0.01309531,((2_279:0.18316219,(2_270:0.04642919,0_331:0.01886881):0.10450031):0.10272481,3_2013:0.01009569):0.04873081,4_44:0.01313569);
2
+
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000085_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ (1_45:0.00000021,(((2_1473:0.31915438,0_1578:0.15227962):0.36810510,0_339:0.10271446):0.09883727,3_2009:0.00175419):0.00250281,4_40:0.00919579);
2
+
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000086_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ ((0_355:0.40449971,1_22:0.00328129):0.01738548,((0_354:0.24056787,2_338:0.43686212):0.08569158,3_1991:0.01884131):0.00733491,4_22:0.01099227);
2
+
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000087_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ ((((3_355:0.00375637,4_580:0.00745362):0.00211225,2_2136:0.04231225):0.00502325,0_376:0.00909975):0.15216025,1_601:0.11164837,0_395:0.13646063);
2
+
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000091_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ ((3_1946:0.00560969,(4_2184:0.00549603,1_2242:0.00226797):0.00086950):0.03322888,(2_369:0.06960375,0_721:0.49235125):0.03909647,0_416:0.03501343);
2
+
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000095_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ (((3_1068:0.85842637,2_469:0.41506062):0.07065275,(0_725:0.20549737,0_542:0.22077262):0.02002725):0.18450200,1_2009:0.00753475,4_1938:0.00941525);
2
+
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000097_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ ((((3_1838:0.00000050,1_2113:0.00000050):-0.00000000,4_2059:0.00000050):0.12777250,0_560:0.08344900):0.06457550,2_488:0.07951750,1_579:1.63863050);
2
+
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/WorkingDirectory/Trees_ids/OG0000100_tree_id.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ ((((1_530:0.00000000,3_264:0.00000000):0.00000000,4_533:0.00000000):0.16302875,0_2339:0.14467925):0.67440575,0_622:1.36968725,2_2222:-0.45122725);
2
+