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  1. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000003_tree.txt +1 -0
  2. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000004_tree.txt +1 -0
  3. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000005_tree.txt +1 -0
  4. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000006_tree.txt +1 -0
  5. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000009_tree.txt +1 -0
  6. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000013_tree.txt +1 -0
  7. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000015_tree.txt +1 -0
  8. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000016_tree.txt +1 -0
  9. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000018_tree.txt +1 -0
  10. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000020_tree.txt +1 -0
  11. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000023_tree.txt +1 -0
  12. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000028_tree.txt +1 -0
  13. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000029_tree.txt +1 -0
  14. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000034_tree.txt +1 -0
  15. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000035_tree.txt +1 -0
  16. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000036_tree.txt +1 -0
  17. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000037_tree.txt +1 -0
  18. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000039_tree.txt +1 -0
  19. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000040_tree.txt +1 -0
  20. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000043_tree.txt +1 -0
  21. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000045_tree.txt +1 -0
  22. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000047_tree.txt +1 -0
  23. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000048_tree.txt +1 -0
  24. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000049_tree.txt +1 -0
  25. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000050_tree.txt +1 -0
  26. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000054_tree.txt +1 -0
  27. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000056_tree.txt +1 -0
  28. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000057_tree.txt +1 -0
  29. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000060_tree.txt +1 -0
  30. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000061_tree.txt +1 -0
  31. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000062_tree.txt +1 -0
  32. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000064_tree.txt +1 -0
  33. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000066_tree.txt +1 -0
  34. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000068_tree.txt +1 -0
  35. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000069_tree.txt +1 -0
  36. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000074_tree.txt +1 -0
  37. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000075_tree.txt +1 -0
  38. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000077_tree.txt +1 -0
  39. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000082_tree.txt +1 -0
  40. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000083_tree.txt +1 -0
  41. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000088_tree.txt +1 -0
  42. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000090_tree.txt +1 -0
  43. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000092_tree.txt +1 -0
  44. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000093_tree.txt +1 -0
  45. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000095_tree.txt +1 -0
  46. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000096_tree.txt +1 -0
  47. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000097_tree.txt +1 -0
  48. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000098_tree.txt +1 -0
  49. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000099_tree.txt +1 -0
  50. experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000101_tree.txt +1 -0
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000003_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ ((KD337_16_NAFOICDF_00317:0.0567733,(((TT9_LFPAFLNI_01884:0.0154577,TT9_LFPAFLNI_00114:0.00172532)n4:0.00229961,SA211_MHAAABBN_01658:0.0124349)n3:0.00205871,(KBS0714_MOLHKGIG_02280:0.338712,KBS0714_MOLHKGIG_01386:0.00547474)n5:0.000608304)n2:0.030824)n1:0.00702606,(((SA211_MHAAABBN_00319:0,SA211_MHAAABBN_02267:0)n8:0.0104069,SA211_MHAAABBN_00788:0.0015531)n7:0.00699543,(((KBS0714_MOLHKGIG_01068:0.0133446,KD337_16_NAFOICDF_00625:0.0107374)n11:0.00120444,((AS2_ACLBLIBL_01304:0.00500704,(AS2_ACLBLIBL_02631:0.0167597,AS2_ACLBLIBL_02347:0.00125131)n14:0.0132335)n13:0.00549544,((AS2_ACLBLIBL_01281:5e-07,AS2_ACLBLIBL_01312:5e-07)n16:0.00596747,AS2_ACLBLIBL_01317:0.012011)n15:0.00680981)n12:0.0024795)n10:0.00414823,((KD337_16_NAFOICDF_02207:5e-07,(KD337_16_NAFOICDF_01836:5e-07,KD337_16_NAFOICDF_01796:5e-07)n19:0)n18:0.00834597,((AS2_ACLBLIBL_02614:0.037716,SA211_MHAAABBN_01116:0.011639)n21:0.00519576,((SA211_MHAAABBN_01327:5e-07,TT9_LFPAFLNI_01539:5e-07)n23:0,(AS2_ACLBLIBL_02331:5e-07,AS2_ACLBLIBL_00758:4.5e-07)n24:5e-08)n22:0)n20:0.00149001)n17:0.000165557)n9:0.00484671)n6:0.000538523)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000004_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_16_NAFOICDF_01829:0.303659,(AS2_ACLBLIBL_00899:0.586123,(((SA211_MHAAABBN_01015:0.0885647,KBS0714_MOLHKGIG_02069:0.00598831)n4:0.118524,AS2_ACLBLIBL_00229:2.54157e-06)n3:0.351008,(AS2_ACLBLIBL_00643:2.54157e-06,(((TT9_LFPAFLNI_01974:2.54157e-06,(SA211_MHAAABBN_01819:2.54157e-06,(KBS0714_MOLHKGIG_02277:2.54157e-06,((KBS0714_MOLHKGIG_01393:2.54157e-06,(SA211_MHAAABBN_02016:2.54157e-06,((SA211_MHAAABBN_01012:0.0329093,(AS2_ACLBLIBL_00228:0,AS2_ACLBLIBL_00895:0)n16:0.261294)n15:0.0941234,(AS2_ACLBLIBL_02100:0.00437312,SA211_MHAAABBN_00355:2.54157e-06)n17:2.54157e-06)n14:9.74e-06)n13:9.74e-06)n12:9.74e-06,(KBS0714_MOLHKGIG_02112:2.54157e-06,SA211_MHAAABBN_01746:2.54157e-06)n18:2.54157e-06)n11:8.766e-06)n10:9.74e-07)n9:9.74e-06)n8:9.74e-06,((TT9_LFPAFLNI_00116:2.54157e-06,SA211_MHAAABBN_01125:2.54157e-06)n20:2.54157e-06,KBS0714_MOLHKGIG_00376:2.54157e-06)n19:2.54157e-06)n7:0.00074121,((TT9_LFPAFLNI_01547:0,(TT9_LFPAFLNI_01880:0,TT9_LFPAFLNI_01549:0)n23:0)n22:0.00038011,AS2_ACLBLIBL_01506:2.54157e-06)n21:2.54157e-06)n6:0.00010439)n5:0.0540488)n2:0.356428)n1:0.303659)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000005_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (((KD337_16_NAFOICDF_01820:0.0480273,KD337_16_NAFOICDF_00652:0.0381747)n2:0.00967885,AS2_ACLBLIBL_01282:0.0551577)n1:0.0230676,(((KD337_16_NAFOICDF_01832:0.172567,KD337_16_NAFOICDF_01361:0.0470863)n5:0.0189387,KD337_16_NAFOICDF_00641:0.0523848)n4:0.0548108,((SA211_MHAAABBN_01778:0.963278,(KD337_16_NAFOICDF_00227:0.484699,KD337_16_NAFOICDF_00678:1.17641)n8:0.130712)n7:0.895467,(AS2_ACLBLIBL_02274:0.0197706,((KD337_16_NAFOICDF_02206:0.045165,KD337_16_NAFOICDF_00448:0.024019)n11:0.0519192,((KD337_16_NAFOICDF_00645:0,KD337_16_NAFOICDF_00315:0)n13:0.0276021,((KD337_16_NAFOICDF_01890:0.00760725,((KD337_16_NAFOICDF_01835:0.00216597,KD337_16_NAFOICDF_00226:8.503e-05)n17:0.00412963,KD337_16_NAFOICDF_00312:0.00488987)n16:0.00407)n15:0.00215033,(KD337_16_NAFOICDF_00627:0.00079899,((KD337_16_NAFOICDF_02162:0,KD337_16_NAFOICDF_00631:0)n20:0.00285841,(KD337_16_NAFOICDF_00751:0,KD337_16_NAFOICDF_01794:0)n21:0.00010659)n19:0.00068751)n18:0.00179948)n14:0.00719922)n12:0.000678897)n10:7.5433e-05)n9:0.042145)n6:0.176959)n3:0.0230676)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000006_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (AS2_ACLBLIBL_01213:0,((TT9_LFPAFLNI_02204:0,KBS0714_MOLHKGIG_00158:0)n2:0,(TT9_LFPAFLNI_01886:0,((SA211_MHAAABBN_01103:0,(TT9_LFPAFLNI_01251:0,((TT9_LFPAFLNI_00591:0,((SA211_MHAAABBN_01016:0,SA211_MHAAABBN_01115:0)n10:0,(KBS0714_MOLHKGIG_02076:0,KBS0714_MOLHKGIG_01293:0)n11:0)n9:0)n8:0,(TT9_LFPAFLNI_00589:0,(SA211_MHAAABBN_01111:0.0108997,(KBS0714_MOLHKGIG_01383:0.145001,KBS0714_MOLHKGIG_01033:0.0022954)n14:0.00377913)n13:0.000989379)n12:0.000109931)n7:0)n6:0)n5:0,(TT9_LFPAFLNI_01338:0,SA211_MHAAABBN_02022:0)n15:0)n4:0)n3:0)n1:0)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000009_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (((KBS0714_MOLHKGIG_02228:0.118103,TT9_LFPAFLNI_01350:3.37906e-07)n2:5.49e-06,SA211_MHAAABBN_02283:3.37906e-07)n1:2.745e-06,((TT9_LFPAFLNI_00607:3.37906e-07,(SA211_MHAAABBN_00344:3.37906e-07,((TT9_LFPAFLNI_01017:3.37906e-07,(KBS0714_MOLHKGIG_01503:0.219835,SA211_MHAAABBN_00091:3.37906e-07)n8:5.49e-06)n7:5.49e-06,((SA211_MHAAABBN_01393:3.37906e-07,TT9_LFPAFLNI_02163:3.37906e-07)n10:3.37906e-07,KBS0714_MOLHKGIG_01400:3.37906e-07)n9:3.37906e-07)n6:4.941e-06)n5:5.49e-07)n4:5.49e-06,((KBS0714_MOLHKGIG_00712:3.37906e-07,TT9_LFPAFLNI_01157:3.37906e-07)n12:3.37906e-07,SA211_MHAAABBN_01014:3.37906e-07)n11:3.37906e-07)n3:2.745e-06)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000013_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_16_NAFOICDF_01887:0.0156952,((TT9_LFPAFLNI_01544:0.310013,(SA211_MHAAABBN_01765:0.00214371,((AS2_ACLBLIBL_00706:0.475675,AS2_ACLBLIBL_02496:0.295843)n5:0.36602,(AS2_ACLBLIBL_02276:2.05835e-06,(AS2_ACLBLIBL_02615:2.05835e-06,(AS2_ACLBLIBL_02636:0.0164108,AS2_ACLBLIBL_02495:0.160142)n8:0.0877972)n7:0.0316281)n6:0.0377297)n4:0.00419219)n3:0.0884951)n2:0.0525349,(SA211_MHAAABBN_00341:0.125681,TT9_LFPAFLNI_00898:0.0181851)n9:0.00202057)n1:0.0156952)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000015_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ ((((KBS0714_MOLHKGIG_01771:0,SA211_MHAAABBN_01478:0)n3:0.00351475,TT9_LFPAFLNI_01700:0.00446625)n2:0.0128569,(AS2_ACLBLIBL_01106:0.0304285,KD337_16_NAFOICDF_01032:0.0938865)n4:0.00598188)n1:0.00535712,(AS2_ACLBLIBL_01897:0.0339341,((KBS0714_MOLHKGIG_00992:0.0125064,KD337_16_NAFOICDF_01844:0.0118856)n7:0.00231212,(SA211_MHAAABBN_00706:0.00465431,TT9_LFPAFLNI_00935:0.00377569)n8:0.00501737)n6:0.00301888)n5:0.00535712)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000016_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (((AS2_ACLBLIBL_01238:0.00968165,((SA211_MHAAABBN_01361:0.0031751,TT9_LFPAFLNI_01586:0.0018629)n4:0.00153679,KBS0714_MOLHKGIG_01656:0.00653071)n3:0.0164408)n2:0.00724594,KD337_16_NAFOICDF_01149:0.0301557)n1:0.210755,(KD337_16_NAFOICDF_02465:0.0121016,(AS2_ACLBLIBL_02606:0.008174,(KBS0714_MOLHKGIG_00355:0.00086601,(SA211_MHAAABBN_00071:0.00361936,TT9_LFPAFLNI_00362:5.36378e-07)n8:0.00065449)n7:0.00444025)n6:0.0084565)n5:0.210755)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000018_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_16_NAFOICDF_01886:0.00514618,(((AS2_ACLBLIBL_02616:0,AS2_ACLBLIBL_02497:0)n3:0.0024707,(AS2_ACLBLIBL_02275:0.00604717,AS2_ACLBLIBL_02634:7.3736e-07)n4:0.0115305)n2:0.017677,((SA211_MHAAABBN_00342:0.126053,TT9_LFPAFLNI_01543:0.216031)n6:0.047497,(TT9_LFPAFLNI_00899:0.0680276,SA211_MHAAABBN_01766:0.0447093)n7:0.0049677)n5:0.169111)n1:0.0187902)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000020_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ ((KBS0714_MOLHKGIG_00633:0.0137077,((AS2_ACLBLIBL_00405:0.00492553,KD337_16_NAFOICDF_02196:0.00219647)n3:0.0102903,TT9_LFPAFLNI_00598:0.00369116)n2:0.00751134)n1:0.245181,(((KBS0714_MOLHKGIG_01289:0,SA211_MHAAABBN_01008:0)n6:0.00094753,TT9_LFPAFLNI_01247:0.00251147)n5:0.0833185,KD337_16_NAFOICDF_00711:0.075097)n4:0.245181)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000023_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_16_NAFOICDF_02299:0.197298,((AS2_ACLBLIBL_02417:0.0897701,(TT9_LFPAFLNI_00535:0.011344,SA211_MHAAABBN_00256:0.00593104)n3:0.0775176)n2:0.0573558,(AS2_ACLBLIBL_01211:1.04888,(SA211_MHAAABBN_00245:0.0130483,(TT9_LFPAFLNI_00524:0.00675058,KBS0714_MOLHKGIG_00524:0.00442542)n6:0.00956661)n5:0.372936)n4:0.251601)n1:0.197298)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000028_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (((SA211_MHAAABBN_02148:0,(TT9_LFPAFLNI_00142:0.00280964,KBS0714_MOLHKGIG_00134:9.87312e-07)n3:0.00012864)n2:0.0196287,AS2_ACLBLIBL_00251:0.0175198)n1:0.0345866,(KD337_16_NAFOICDF_00186:0.0936942,(KD337_16_NAFOICDF_00187:0.231713,KD337_16_NAFOICDF_02180:0.454447)n5:0.0983268)n4:0.0345866)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000029_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ ((TT9_LFPAFLNI_02014:0,KD337_16_NAFOICDF_00670:0)n1:0.139806,(KD337_16_NAFOICDF_00617:0.396144,((AS2_ACLBLIBL_00292:0.0261018,KBS0714_MOLHKGIG_00099:1.47863e-06)n4:0.00066179,(TT9_LFPAFLNI_00094:0,SA211_MHAAABBN_02112:0)n5:0)n3:0.776778)n2:0.139806)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000034_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ ((AS2_ACLBLIBL_00412:0.0302051,((KD337_16_NAFOICDF_00648:0,KD337_16_NAFOICDF_02216:0)n3:0.0117174,KD337_16_NAFOICDF_00325:0.018377)n2:0.00204189)n1:0.00188306,(TT9_LFPAFLNI_01347:0.00511887,(KBS0714_MOLHKGIG_01397:0.00028712,SA211_MHAAABBN_01130:0.0139309)n5:0.00439462)n4:0.00558413)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000035_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ ((KD337_16_NAFOICDF_00649:6.5333e-07,(KD337_16_NAFOICDF_00326:0.0837726,KD337_16_NAFOICDF_02217:6.5333e-07)n2:0.00373256)n1:0.00287966,(AS2_ACLBLIBL_00413:0.0196547,((KBS0714_MOLHKGIG_01401:0.130959,TT9_LFPAFLNI_01351:0.360286)n5:0.0455866,SA211_MHAAABBN_01131:0.00071144)n4:0.0103328)n3:0.00287966)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000036_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_16_NAFOICDF_00434:0.00315784,(TT9_LFPAFLNI_02184:0.00430931,(SA211_MHAAABBN_01952:0.004319,((AS2_ACLBLIBL_00493:0.138379,KBS0714_MOLHKGIG_02275:0.72641)n4:0.128501,(AS2_ACLBLIBL_00488:0.0153053,KBS0714_MOLHKGIG_02253:0.0074853)n5:0.0008317)n3:0.00423197)n2:0.000470219)n1:0.00315784)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000037_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_16_NAFOICDF_00520:0.038105,((TT9_LFPAFLNI_02104:0.00158944,(KBS0714_MOLHKGIG_02160:0,SA211_MHAAABBN_01873:0)n3:0.00916856)n2:0.0363719,((AS2_ACLBLIBL_02580:1.60355,AS2_ACLBLIBL_00589:0.372398)n5:0.399132,AS2_ACLBLIBL_00598:0.0340124)n4:0.00377916)n1:0.0415209)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000039_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ ((TT9_LFPAFLNI_02031:0.764438,((KD337_16_NAFOICDF_00600:0.293335,KD337_16_NAFOICDF_00599:0.300224)n3:0.0333582,KD337_16_NAFOICDF_02101:0.636121)n2:0.0706802)n1:0.0787121,(SA211_MHAAABBN_01802:0.0192402,(KBS0714_MOLHKGIG_02094:0.0395114,AS2_ACLBLIBL_00684:0.0582886)n5:0.00386081)n4:0.0276696)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000040_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ ((SA211_MHAAABBN_01794:0.0105327,KBS0714_MOLHKGIG_02089:0.0152583)n1:0.0312032,(((KD337_16_NAFOICDF_00662:1.81552,TT9_LFPAFLNI_02028:2.19177e-06)n4:0.194314,AS2_ACLBLIBL_00694:2.19177e-06)n3:0.0782589,(AS2_ACLBLIBL_01308:0.00842769,KD337_16_NAFOICDF_02237:0.0376703)n5:0.276615)n2:0.030735)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000043_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (AS2_ACLBLIBL_00725:0.00153755,((KBS0714_MOLHKGIG_01072:0,(TT9_LFPAFLNI_01021:0,(SA211_MHAAABBN_00348:0,SA211_MHAAABBN_00335:0)n4:0)n3:0)n2:0.0003895,(SA211_MHAAABBN_00791:0.0041365,KBS0714_MOLHKGIG_00162:0.0188387)n5:0.00209319)n1:0.00153755)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000045_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_16_NAFOICDF_02256:0.65587,((KBS0714_MOLHKGIG_01015:3.22334e-06,((SA211_MHAAABBN_00729:0.0011255,AS2_ACLBLIBL_01873:0.0035275)n4:0.000524,TT9_LFPAFLNI_00959:0.097084)n3:0.00899222)n2:1.19029,(AS2_ACLBLIBL_00822:1.30473,TT9_LFPAFLNI_00958:3.22334e-06)n5:3.22334e-06)n1:0.65587)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000047_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (TT9_LFPAFLNI_00735:0.264599,((KD337_16_NAFOICDF_00792:0.125211,(AS2_ACLBLIBL_00855:0.0674537,SA211_MHAAABBN_01696:0.200906)n3:0.0645251)n2:0.0847977,(AS2_ACLBLIBL_01010:0.889235,(KD337_16_NAFOICDF_00870:0.787023,KD337_16_NAFOICDF_00943:0.508593)n5:0.0565103)n4:0.0238539)n1:0.00265043)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000048_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (((SA211_MHAAABBN_01753:0.00664034,(KBS0714_MOLHKGIG_02047:0.00280441,TT9_LFPAFLNI_01981:1.9224e-06)n3:0.0190982)n2:0.17528,KD337_16_NAFOICDF_00733:0.238099)n1:0.0463697,((KBS0714_MOLHKGIG_01791:0.00349297,AS2_ACLBLIBL_01085:0.00293503)n5:0.674277,KD337_16_NAFOICDF_00743:0.707056)n4:0.0463697)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000049_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_16_NAFOICDF_01023:0.0299424,((SA211_MHAAABBN_01485:0.00726013,((KBS0714_MOLHKGIG_00836:0.444817,KBS0714_MOLHKGIG_00837:0.131953)n4:0.665023,(KBS0714_MOLHKGIG_01778:0.00569369,TT9_LFPAFLNI_01707:0.00439331)n5:0.00159828)n3:0.000177587)n2:0.0602399,AS2_ACLBLIBL_01099:0.0790576)n1:0.00863038)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000050_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ ((KBS0714_MOLHKGIG_00172:1.17994,KD337_16_NAFOICDF_02230:1.20931)n1:0.517935,(KD337_16_NAFOICDF_01399:3.56269e-06,(AS2_ACLBLIBL_01488:0.00633928,((KBS0714_MOLHKGIG_01408:0.00413422,SA211_MHAAABBN_01138:3.56269e-06)n5:0.00013422,TT9_LFPAFLNI_01358:3.56269e-06)n4:0.05862)n3:0.132285)n2:0.517935)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000054_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ ((TT9_LFPAFLNI_01517:0.00423125,(KBS0714_MOLHKGIG_01590:0.0089655,SA211_MHAAABBN_01302:0.0020005)n2:0.00446675)n1:0.0900756,(KD337_16_NAFOICDF_01240:0.186076,((KD337_16_NAFOICDF_01828:1.33546,KD337_16_NAFOICDF_00714:1.69504)n5:0.585795,KD337_16_NAFOICDF_00643:0.874345)n4:0.343302)n3:0.0900756)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000056_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ ((((SA211_MHAAABBN_00033:0.00089808,KBS0714_MOLHKGIG_00318:0.00412092)n3:0.00141431,TT9_LFPAFLNI_00325:0.00349074)n2:0.0192356,AS2_ACLBLIBL_00019:0.0517623)n1:0.0212715,(KD337_16_NAFOICDF_00015:0.0556756,KD337_16_NAFOICDF_00687:0.973311)n4:0.0212715)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000057_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ ((AS2_ACLBLIBL_00027:0.233312,(KD337_16_NAFOICDF_00654:1.70175,KD337_16_NAFOICDF_00023:0.169007)n2:0.0187786)n1:0.00733412,((SA211_MHAAABBN_00025:0.00509109,TT9_LFPAFLNI_00317:7.591e-05)n4:0.00785825,KBS0714_MOLHKGIG_00310:0.0061578)n3:0.149015)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000060_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_16_NAFOICDF_00046:0.0774871,(((SA211_MHAAABBN_02309:0.00535373,TT9_LFPAFLNI_00293:0.00418227)n3:0.00508912,(KBS0714_MOLHKGIG_01958:2.40111,KBS0714_MOLHKGIG_00287:0.0110356)n4:0.00122618)n2:0.0518398,AS2_ACLBLIBL_00067:0.0580756)n1:0.03715)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000061_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (((SA211_MHAAABBN_02297:0.00368381,(KBS0714_MOLHKGIG_00282:0.00810519,TT9_LFPAFLNI_00281:0.00455281)n3:0.00200369)n2:0.0977394,AS2_ACLBLIBL_00071:0.0693888)n1:0.0507666,(KD337_16_NAFOICDF_00057:0.167643,KD337_16_NAFOICDF_00450:2.04508)n4:0.0507666)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000062_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_16_NAFOICDF_02346:0.121193,((AS2_ACLBLIBL_00074:0.00234231,(SA211_MHAAABBN_00203:0.0289228,(TT9_LFPAFLNI_00278:0.00560031,SA211_MHAAABBN_02294:1.73025e-06)n4:0.00178397)n3:0.000198219)n2:0.00771069,KBS0714_MOLHKGIG_00279:0.00536081)n1:1.55743)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000064_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_16_NAFOICDF_00137:0.220282,(((SA211_MHAAABBN_02135:0,TT9_LFPAFLNI_00127:0)n3:0.0250917,(AS2_ACLBLIBL_00088:0.624841,AS2_ACLBLIBL_00265:0.0533037)n4:0.00592263)n2:0.0203834,KBS0714_MOLHKGIG_00119:0.354892)n1:0.380563)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000066_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ ((KD337_16_NAFOICDF_00079:0.143595,KD337_16_NAFOICDF_00526:0.780972)n1:0.0260305,(AS2_ACLBLIBL_00111:0.144119,((KBS0714_MOLHKGIG_00258:0.00275811,TT9_LFPAFLNI_00257:1.20469e-06)n4:0.0125031,SA211_MHAAABBN_02272:0.00953305)n3:0.0595365)n2:0.0260305)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000068_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_16_NAFOICDF_00765:0.0104518,(((TT9_LFPAFLNI_01952:0.00544775,KBS0714_MOLHKGIG_02014:0.00658725)n3:0.00188362,SA211_MHAAABBN_01724:0.00615238)n2:0.0515351,(AS2_ACLBLIBL_00826:0.0606996,AS2_ACLBLIBL_00129:1.37126)n4:0.125)n1:0.0104518)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000069_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_16_NAFOICDF_00100:0.0750078,((KBS0714_MOLHKGIG_00236:0.00582243,(SA211_MHAAABBN_00102:0.41198,(SA211_MHAAABBN_02249:0.00185525,TT9_LFPAFLNI_00237:0.00135175)n4:0.00497574)n3:0.00055286)n2:0.0481915,AS2_ACLBLIBL_00135:0.028429)n1:0.0803618)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000074_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ ((AS2_ACLBLIBL_00184:0.0441909,(KD337_16_NAFOICDF_00130:0.0118214,KD337_16_NAFOICDF_00132:2.2062)n2:0.245134)n1:0.0182153,((KBS0714_MOLHKGIG_00207:0,TT9_LFPAFLNI_00207:0)n4:0.00376662,SA211_MHAAABBN_02200:0.00194237)n3:0.00958713)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000075_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_16_NAFOICDF_01744:0.0364455,(((KBS0714_MOLHKGIG_01028:0,SA211_MHAAABBN_00743:0)n3:0,TT9_LFPAFLNI_00972:0)n2:0.015177,(AS2_ACLBLIBL_00185:0.972803,AS2_ACLBLIBL_01852:0.862341)n4:0.984594)n1:0.0364455)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000077_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_16_NAFOICDF_01743:0.0103629,((AS2_ACLBLIBL_01854:0.619837,AS2_ACLBLIBL_00187:0.489964)n2:0.574448,((KBS0714_MOLHKGIG_01029:0,SA211_MHAAABBN_00744:0)n4:0,TT9_LFPAFLNI_00973:0)n3:0.00769423)n1:0.0103629)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000082_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ ((AS2_ACLBLIBL_00326:0.0562451,((SA211_MHAAABBN_02081:0.00378656,KBS0714_MOLHKGIG_00068:0.00132244)n3:0.0184039,TT9_LFPAFLNI_00062:0.0156086)n2:0.0187114)n1:0.0136237,(KD337_16_NAFOICDF_00684:0.716861,KD337_16_NAFOICDF_00266:0.0438693)n4:0.0136237)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000083_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_16_NAFOICDF_01735:0.340645,((TT9_LFPAFLNI_00983:0.0105182,(SA211_MHAAABBN_00755:0.0206522,KBS0714_MOLHKGIG_01042:0.0061398)n3:0.0159949)n2:0.142395,(AS2_ACLBLIBL_00331:0.0037765,AS2_ACLBLIBL_00544:0.0090035)n4:0.268078)n1:0.340645)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000088_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_16_NAFOICDF_02202:0.00218681,((TT9_LFPAFLNI_02004:0.114806,(AS2_ACLBLIBL_00399:0.00293637,AS2_ACLBLIBL_02642:0.49369)n3:0.0548544)n2:0.01563,(SA211_MHAAABBN_01770:0.00425513,KBS0714_MOLHKGIG_00610:0.0132419)n4:0.0777043)n1:0.100236)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000090_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_16_NAFOICDF_00384:0.14309,(((KBS0714_MOLHKGIG_02305:0,SA211_MHAAABBN_01998:0)n3:0.00728425,TT9_LFPAFLNI_02246:2.77222e-06)n2:0.076911,(AS2_ACLBLIBL_01948:2.30841,AS2_ACLBLIBL_00432:0.169389)n4:0.018821)n1:0.0530695)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000092_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_16_NAFOICDF_00427:0.786251,(AS2_ACLBLIBL_00464:1.44313,(TT9_LFPAFLNI_02208:0.193846,((KBS0714_MOLHKGIG_00568:1.44501,KBS0714_MOLHKGIG_00037:1.24672)n4:0.0864029,KBS0714_MOLHKGIG_02274:0.225889)n3:0.0250988)n2:0.539741)n1:0.786251)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000093_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_16_NAFOICDF_00419:0.054078,(((SA211_MHAAABBN_01960:0.249941,KBS0714_MOLHKGIG_02265:0.0146493)n3:0.00377825,(AS2_ACLBLIBL_00641:0.1453,AS2_ACLBLIBL_00469:0.0122191)n4:0.00135768)n2:0.015481,TT9_LFPAFLNI_02198:0.0527201)n1:0.054078)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000095_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_16_NAFOICDF_00486:0.20753,(SA211_MHAAABBN_01107:0.858426,((AS2_ACLBLIBL_00743:0.205497,AS2_ACLBLIBL_00560:0.220773)n3:0.0200272,(KBS0714_MOLHKGIG_02070:0.00753475,TT9_LFPAFLNI_01998:0.00941525)n4:0.184502)n2:0.0706528)n1:0.20753)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000096_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_16_NAFOICDF_00491:0.0672741,(AS2_ACLBLIBL_00566:0.0584983,(SA211_MHAAABBN_01898:0.0137146,(TT9_LFPAFLNI_00166:2.39922,(KBS0714_MOLHKGIG_02184:0.00185681,TT9_LFPAFLNI_02129:0.00420819)n4:0.00901975)n3:0.00100219)n2:0.0629994)n1:0.0920547)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000097_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_16_NAFOICDF_00505:0.0397588,((TT9_LFPAFLNI_02119:5e-07,(KBS0714_MOLHKGIG_00604:1.63863,(SA211_MHAAABBN_01888:5e-07,KBS0714_MOLHKGIG_02174:5e-07)n4:-0)n3:-0)n2:0.127773,AS2_ACLBLIBL_00578:0.083449)n1:0.0645755)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000098_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ ((KD337_16_NAFOICDF_00510:0.155425,KD337_16_NAFOICDF_01906:1.52305)n1:0.0221804,(AS2_ACLBLIBL_00584:0.168638,(SA211_MHAAABBN_01882:0.00062969,(KBS0714_MOLHKGIG_02168:0.0148676,TT9_LFPAFLNI_02113:0.0180894)n4:0.00586681)n3:0.0885571)n2:0.0221804)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000099_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_16_NAFOICDF_00518:0.327332,(KBS0714_MOLHKGIG_02162:1.57847e-06,(AS2_ACLBLIBL_00595:0.333514,(SA211_MHAAABBN_01875:0.177706,(TT9_LFPAFLNI_02107:0.0652714,SA211_MHAAABBN_01876:0.133206)n4:0.0665854)n3:0.00739838)n2:0.190329)n1:0.427716)n0;
experiments/bioagent_bench/runs/scale_1000/comparative-genomics_20260515_135806/orthofinder_output/Results_May15/Resolved_Gene_Trees/OG0000101_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (((SA211_MHAAABBN_01830:0.0109383,(TT9_LFPAFLNI_02060:0.00899377,KBS0714_MOLHKGIG_02122:0.0118992)n3:0.00210951)n2:0.0136613,(KD337_16_NAFOICDF_00718:0.632372,KD337_16_NAFOICDF_00575:0.0277293)n4:0.00308103)n1:0.0638356,AS2_ACLBLIBL_00658:0.188184)n0;