Model card: remove em-dashes from capabilities section
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README.md
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@@ -33,9 +33,9 @@ The same model weights power three analyses, exposed as CLI subcommands:
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| Command | Analysis | Output |
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| :--- | :--- | :--- |
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| `predict` | **Episodic positive selection**
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| `epistasis` | **Epistatic sector mining (ESSM)**
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| `phenotype` | **Directional phenotype-genotype association (PhyloWAS)**
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`epistasis` and `phenotype` are **derived analyses built on the selection model** (its per-site drive and
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branch-level attributions); they do not require separate weights. The results below and the variants
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| Command | Analysis | Output |
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| :--- | :--- | :--- |
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| `predict` | **Episodic positive selection**: per-site MEME LRT surrogate (the core model). | per-site LRT + p-value |
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| `epistasis` | **Epistatic sector mining (ESSM)**: phylogenetic branch attribution, inter-site co-selection networks, in-silico Selection Deep Mutational Scanning, and multi-scale epistatic sectors. | co-selection edges, sectors, DMS sweep (JSON / GraphML / CSV) |
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| `phenotype` | **Directional phenotype-genotype association (PhyloWAS)**: associates sites with a trait across the tree and extracts Phenotype-Associated Residue Signatures (PARS). Supports curated phenotype presets (marine, echolocation, high-altitude, longevity, …) or a user trait table. | per-site trait association, p-values, FDR |
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`epistasis` and `phenotype` are **derived analyses built on the selection model** (its per-site drive and
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branch-level attributions); they do not require separate weights. The results below and the variants
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