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Download LLMs_Language_bias-main/src/Language_Evaluation.py from AAAIBenchmark/Multi-Opthalingua: direct link, hf CLI and curl.
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15.2 kB
| """ Evaluate Medical Tests Classification in LLMS """ | |
| ## Setup | |
| #### Load the API key and libaries. | |
| import json | |
| import pandas as pd | |
| import os | |
| import openai | |
| from dotenv import load_dotenv, find_dotenv | |
| import argparse | |
| import re | |
| import subprocess | |
| import time | |
| ### Download LLAMA model: | |
| def download_and_rename(url, filename): | |
| """Downloads a file from the given URL and renames it to the given new file name. | |
| Args: | |
| url: The URL of the file to download. | |
| new_file_name: The new file name for the downloaded file. | |
| """ | |
| os.makedirs(os.path.dirname(filename), exist_ok=True) | |
| print(f'Downloading the weights of the model: {url} ...') | |
| subprocess.run(["wget", "-q", "-O", filename, url]) | |
| print(f'Done!') | |
| def download_hugging_face_model(model_version='Llama-2-7b'): | |
| if model_version not in ['Llama-2-7b', 'Llama-2-13b', 'Llama-2-70b', 'Mistral-7b']: | |
| raise ValueError("Options for Llama model should be 7b, 13b or 70b, or Mistral-7b") | |
| MODEL_URL = { | |
| 'Llama-2-7b': 'https://huggingface.co/TheBloke/Llama-2-7b-Chat-GGUF/resolve/main/llama-2-7b-chat.Q8_0.gguf', | |
| 'Llama-2-13b': 'https://huggingface.co/TheBloke/Llama-2-13B-chat-GGUF/resolve/main/llama-2-13b-chat.Q8_0.gguf', | |
| 'Llama-2-70b': 'https://huggingface.co/TheBloke/Llama-2-70B-chat-GGUF/resolve/main/llama-2-70b-chat.Q5_0.gguf', | |
| 'Mistral-7b': 'https://huggingface.co/TheBloke/Mistral-7B-Instruct-v0.1-GGUF/resolve/main/mistral-7b-instruct-v0.1.Q8_0.gguf' | |
| } | |
| MODEL_URL = MODEL_URL[model_version] | |
| model_path = f'Models/{model_version}.gguf' | |
| if os.path.exists(model_path): | |
| confirmation = input(f"The model file '{model_path}' already exists. Do you want to overwrite it? (yes/no): ").strip().lower() | |
| if confirmation != 'yes': | |
| print("Model installation aborted.") | |
| return model_path | |
| download_and_rename(MODEL_URL, model_path) | |
| return model_path | |
| ### Model GPT: | |
| def get_completion_from_messages(messages, | |
| model="gpt-3.5-turbo", | |
| temperature=0, | |
| max_tokens=500): | |
| try: | |
| response = openai.ChatCompletion.create( | |
| model=model, | |
| messages=messages, | |
| temperature=temperature, | |
| max_tokens=max_tokens, | |
| request_timeout=10 | |
| ) | |
| except: | |
| time.sleep(60) | |
| response = get_completion_from_messages(messages, model=model, temperature=temperature, max_tokens=max_tokens) | |
| return response | |
| return response.choices[0].message["content"] | |
| def get_completion_from_messages_hf(messages, | |
| model): | |
| response = model(messages)[0]['generated_text'].replace(messages, '') | |
| return {'response': response} | |
| #### Model Llama 2 | |
| def get_completion_from_messages_llama(messages, | |
| model, | |
| temperature=0, | |
| max_tokens=500, | |
| reasoning=False): | |
| # Get the response: | |
| response = model.create_chat_completion( | |
| messages, | |
| temperature=temperature, | |
| max_tokens=max_tokens | |
| ) | |
| model.set_cache(None) | |
| response = response['choices'][0]['message']["content"] | |
| # Convert the string into a JSON object | |
| # Due to some problems with Llama 2 generating JSON formats, the output requires more preprocessing than GPT. | |
| try: | |
| # Use regular expressions to extract JSON | |
| json_pattern = r'\{.*\}' # Match everything between '{' and '}' | |
| match = re.search(json_pattern, response, re.DOTALL) | |
| response = match.group() | |
| # Define a regex pattern to identify unquoted string values | |
| pattern = r'("[^"]*":\s*)([A-Za-z_][A-Za-z0-9_]*)' | |
| # Use a lambda function to add quotes to unquoted string values | |
| response = re.sub(pattern, lambda m: f'{m.group(1)}"{m.group(2)}"', response) | |
| if not reasoning: | |
| # Convert from {'response': 'A' ) some text without quotes} to {'response': 'A'} | |
| # Use regular expression to extract the letter and surrounding characters | |
| match = re.search(r'"response": "([A-Da-d][^\"]*)"', response) | |
| if match: | |
| response = f'{{{match.group(0)}}}' | |
| # Convert | |
| response = json.loads(response) | |
| resp = response['response'] | |
| except: | |
| print(f'Error converting respose to json: {response}') | |
| print('Generating new response...') | |
| response = get_completion_from_messages_llama(messages, model=model, temperature=temperature, max_tokens=max_tokens, reasoning=reasoning) | |
| return response | |
| if reasoning: | |
| # Iterate through the keys of the dictionary | |
| for key in list(response.keys()): | |
| if 'reas' in key.lower(): | |
| # Update the dictionary with the new key and its corresponding value | |
| response['reasoning'] = response.pop(key) | |
| return response | |
| #### Template for the Questions | |
| def generate_question(question, LANGUAGES, REASONING, Responses=['A', 'B', 'C', 'D']): | |
| delimiter = "####" | |
| languages_text = ", ".join(LANGUAGES) | |
| if REASONING: | |
| system_message = f""" | |
| You will be provided with medical queries in this languages: {languages_text}. \ | |
| The medical query will be delimited with {delimiter} characters. | |
| Each question will have {len(Responses)} possible answer options.\ | |
| provide the letter with the answer and a short sentence answering why the answer was selected \ | |
| Provide your output in json format with the \ | |
| keys: response and reasoning. | |
| Responses: {", ".join(Responses)}. | |
| """ | |
| else: | |
| system_message = f""" | |
| You will be provided with medical queries in this languages: {languages_text}. \ | |
| The medical query will be delimited with {delimiter} characters. | |
| Each question will have {len(Responses)} possible answer options.\ | |
| Provide only the letter with the response. | |
| Provide your output in json format with: | |
| the key: response. | |
| Responses: {", ".join(Responses)}. | |
| E.g. if response is 'a', the output should be: {{"response" : "a"}} | |
| """ | |
| user_message = f"""/ | |
| {question}""" | |
| messages = [ | |
| {'role':'system', | |
| 'content': system_message}, | |
| {'role':'user', | |
| 'content': f"{delimiter}{user_message}{delimiter}"}, | |
| ] | |
| return messages | |
| def generate_template_text_generation(question, LANGUAGES, Responses=['A', 'B', 'C', 'D']): | |
| delimiter = "####" | |
| languages_text = ", ".join(LANGUAGES) | |
| messages = f"""You will be provided with medical queries in this languages: {languages_text}. \ | |
| The medical query will be delimited with {delimiter} characters. | |
| Each question will have {len(Responses)} possible answer options.Provide just the letter with the answer. | |
| Responses: {", ".join(Responses)}. | |
| Question: | |
| {delimiter}{question}{delimiter} | |
| The response is: """ | |
| return messages | |
| #### Template for the Questions | |
| def generate_question_llama(question, LANGUAGES, REASONING, Responses=['A', 'B', 'C', 'D']): | |
| delimiter = "####" | |
| out_template = "" | |
| if REASONING: | |
| output_keys = ['response', 'reasoning'] | |
| else: | |
| output_keys = ['response'] | |
| for response in Responses: | |
| response_dict = {key: f'something describing {key}' for key in output_keys} | |
| response_dict[output_keys[0]] = response | |
| response_str = ', '.join([f"'{k}': '{v}'" for k, v in response_dict.items()]) | |
| out_template += f"If response is {response}: {{ {response_str} }}\n" | |
| languages_text = ", ".join(LANGUAGES) | |
| if REASONING: | |
| system_message = f""" | |
| You will be provided with medical queries in this languages: {languages_text}. \ | |
| The medical query will be delimited with \ | |
| {delimiter} characters. | |
| Each question will have {len(Responses)} possible answer options.\ | |
| provide just the letter with the answer and a short sentence answering why the answer was selected. | |
| Provide your output in json format with the \ | |
| keys: response and reasoning. Make sure to always use the those keys, do not modify the keys. | |
| Response option: {", ".join(Responses)}. | |
| Always use the JSON format. | |
| The output shoulb be: {{"response": "Response option", "", ""}} | |
| """ | |
| else: | |
| system_message = f""" | |
| You will be provided with medical queries in this languages: {languages_text}. \ | |
| The medical query will be delimited with \ | |
| {delimiter} characters. | |
| Each question will have {len(Responses)} possible answer options.\ | |
| provide just the letter with the answer. | |
| Provide your output in json format with the \ | |
| key: response. Make sure to always use the that key, do not modify the key. | |
| Response option: {", ".join(Responses)}. | |
| Always use the JSON format. | |
| The output shoulb be: {{"response": "Response option"}} | |
| """ | |
| user_message = f"""/ | |
| {question}""" | |
| messages = [ | |
| {'role':'system', | |
| 'content': system_message}, | |
| {'role':'user', | |
| 'content': f"{delimiter}{user_message}{delimiter}"}, | |
| ] | |
| return messages | |
| def llm_language_evaluation(path='data/Portuguese.csv', model='gpt-3.5-turbo', temperature=0.0, n_repetitions=1, reasoning=False, languages=['english', 'portuguese']): | |
| # Load API key if GPT, or Model if LLAMA | |
| if 'gpt' in model: | |
| _ = load_dotenv(find_dotenv()) # read local .env file | |
| openai.api_key = os.environ['OPENAI_API_KEY'] | |
| elif 'Llama-2' in model or ('Mistral-7b' in model): | |
| model_path = download_hugging_face_model(model_version=model) | |
| from llama_cpp import Llama | |
| llm = Llama(model_path=model_path, verbose=False, n_ctx=2048) | |
| elif 'bloom': | |
| from transformers import pipeline | |
| llm = pipeline( | |
| task="text-generation", | |
| model=model, | |
| model_kwargs={"temperature": temperature, "max_length": 5}) | |
| reasoning = False | |
| else: | |
| print('Model should be a GPT or Llama-2 model') | |
| return 0 | |
| #### Load the Constants | |
| PATH = path # 'data/Portuguese.csv' | |
| MODEL = model # "gpt-3.5-turbo" | |
| TEMPERATURE = temperature # 0.0 | |
| N_REPETITIONS = n_repetitions # 1 | |
| REASONING = reasoning # False | |
| LANGUAGES = languages # ['english', 'portuguese'] | |
| if N_REPETITIONS <= 0 or (N_REPETITIONS != int(N_REPETITIONS)): | |
| print(f'N_REPETITIONS should be a positive integer, not {N_REPETITIONS}') | |
| print('N_REPETITIONS will be set to 1') | |
| N_REPETITIONS = 1 | |
| ### Questions from a csv file: | |
| df = pd.read_csv(PATH) | |
| ### Evaluate the model in question answering per language: | |
| responses = {} | |
| reasoning = {} | |
| for language in LANGUAGES: | |
| responses[language] = [[] for n in range(N_REPETITIONS)] | |
| if REASONING: | |
| reasoning[language] = [[] for n in range(N_REPETITIONS)] | |
| for row in range(df.shape[0]): | |
| print('*'*50) | |
| print(f'Question {row+1}: ') | |
| for language in LANGUAGES: | |
| print(f'Language: {language}') | |
| question = df[language][row] | |
| print('Question: ') | |
| print(question) | |
| if 'gpt' in model: | |
| messages = generate_question(question, LANGUAGES, REASONING) | |
| elif 'Llama-2' in model or ('Mistral-7b' in model): | |
| messages = generate_question_llama(question, LANGUAGES, REASONING) | |
| elif 'bloom' in model: | |
| messages = generate_template_text_generation(question, LANGUAGES) | |
| else: | |
| print('Model should be a GPT or Llama-2 model') | |
| return 0 | |
| for n in range(N_REPETITIONS): | |
| print(f'Test #{n}: ') | |
| if 'gpt' in model: | |
| response = get_completion_from_messages(messages, MODEL, TEMPERATURE) | |
| # Convert the string into a JSON object | |
| response = json.loads(response) | |
| elif 'Llama-2' in model or ('Mistral-7b' in model): | |
| response = get_completion_from_messages_llama(messages, llm, TEMPERATURE, reasoning=REASONING) | |
| elif 'bloom' in model: | |
| response = get_completion_from_messages_hf(messages, llm) | |
| else: | |
| print('Model should be a GPT or Llama-2 model') | |
| return 0 | |
| print(response) | |
| # Append to the list: | |
| responses[language][n].append(response['response']) | |
| if REASONING: | |
| reasoning[language][n].append(response['reasoning']) | |
| print('*'*50) | |
| ### Save the results in a csv file: | |
| for language in LANGUAGES: | |
| if N_REPETITIONS == 1: | |
| df[f'responses_{language}'] = responses[language][0] | |
| if REASONING: | |
| df[f'reasoning_{language}'] = reasoning[language][0] | |
| for n in range(N_REPETITIONS): | |
| df[f'responses_{language}_{n}'] = responses[language][n] | |
| if REASONING: | |
| df[f'reasoning_{language}_{n}'] = reasoning[language][n] | |
| if not os.path.exists('responses'): | |
| os.makedirs('responses') | |
| if N_REPETITIONS == 1: | |
| df.to_csv(f"responses/{MODEL}_Temperature{str(TEMPERATURE).replace('.', '_')}.csv", index=False) | |
| else: | |
| df.to_csv(f"responses/{MODEL}_Temperature{str(TEMPERATURE).replace('.', '_')}_{N_REPETITIONS}Repetitions.csv", index=False) | |
| def main(): | |
| # Add argparse code to handle command-line arguments | |
| parser = argparse.ArgumentParser(description="Evaluate Medical Tests Classification in LLMS") | |
| parser.add_argument("--csv_file", default="data/Portuguese.csv", help="Path to the CSV file with the questions") | |
| parser.add_argument("--model", default="gpt-3.5-turbo", help="LLM to use e.g: gpt-3.5-turbo, gpt-4, Llama-2-7b, Llama-2-13b, or Llama-2-70b") | |
| parser.add_argument("--temperature", type=float, default=0.0, help="Temperature parameter of the model between 0 and 1. Used to modifiy the model's creativity. 0 is deterministic and 1 is the most creative") | |
| parser.add_argument("--n_repetitions", type=int, default=1, help="Number of repetitions to run each experiment. Used to measure the model's hallucinations") | |
| parser.add_argument("--reasoning", action="store_true", default=False, help="Enable reasoning mode. If set to True, the model will be asked to provide a reasoning for its answer. If set to True the model uses more tokens") | |
| parser.add_argument("--languages", nargs='+', default=['english', 'portuguese'], help="List of languages") | |
| args = parser.parse_args() | |
| PATH = args.csv_file | |
| MODEL = args.model | |
| TEMPERATURE = args.temperature | |
| N_REPETITIONS = args.n_repetitions | |
| REASONING = args.reasoning | |
| LANGUAGES = args.languages | |
| llm_language_evaluation(path=PATH, model=MODEL, temperature=TEMPERATURE, n_repetitions=N_REPETITIONS, reasoning=REASONING, languages=LANGUAGES) | |
| if __name__ == "__main__": | |
| main() |