Upload folder using huggingface_hub
Browse files- .gitattributes +3 -0
- ims2trans23_fold1/checkpoints/best.pth +3 -0
- ims2trans23_fold1/checkpoints/model_last.pth +3 -0
- ims2trans23_fold1/wandb/debug-cli.ocarpent.log +0 -0
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- ims2trans23_fold1/wandb/debug.log +19 -0
- ims2trans23_fold1/wandb/offline-run-20260721_105202-0ov9gtnf/files/config.yaml +214 -0
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- ims2trans23_fold1/wandb/offline-run-20260723_111322-0ov9gtnf/files/config.yaml +215 -0
- ims2trans23_fold1/wandb/offline-run-20260723_111322-0ov9gtnf/files/output.log +0 -0
- ims2trans23_fold1/wandb/offline-run-20260723_111322-0ov9gtnf/files/requirements.txt +95 -0
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- ims2trans23_fold1/wandb/offline-run-20260723_111322-0ov9gtnf/logs/debug-core.log +6 -0
- ims2trans23_fold1/wandb/offline-run-20260723_111322-0ov9gtnf/logs/debug-internal.log +11 -0
- ims2trans23_fold1/wandb/offline-run-20260723_111322-0ov9gtnf/logs/debug.log +19 -0
- ims2trans23_fold1/wandb/offline-run-20260723_111322-0ov9gtnf/run-0ov9gtnf.wandb +3 -0
- ims2trans23_fold1/wandb_run_id.txt +1 -0
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ims2trans23_fold1/wandb/offline-run-20260723_111322-0ov9gtnf/run-0ov9gtnf.wandb filter=lfs diff=lfs merge=lfs -text
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2026-07-23 11:13:22,892 INFO MainThread:3931415 [wandb_init.py:setup_run_log_directory():723] Logging user logs to /leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1/wandb/offline-run-20260723_111322-0ov9gtnf/logs/debug.log
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2026-07-23 11:13:22,892 INFO MainThread:3931415 [wandb_init.py:setup_run_log_directory():724] Logging internal logs to /leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1/wandb/offline-run-20260723_111322-0ov9gtnf/logs/debug-internal.log
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2026-07-23 11:13:22,892 INFO MainThread:3931415 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
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config: {'input_dir': '/leonardo_scratch/large/userexternal/ocarpent/mimose/ims2trans-preprocessed', 'output_dir': '/leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1', 'num_epochs': 1000, 'validation_every': 10, 'batch_size': 8, 'num_workers': 8, 'fp16': True, 'compile': False, 'seed': 0, 'custom_trainer_kwargs': {'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 128, 'debug': False, 'transform_kind': 'imfuse', 'train_masking_mode': 'random', 'val_masking_mode': 'validation', 'split_file': '/leonardo/home/userexternal/ocarpent/MiMoSe/src/mimose/data/splits/splits_5fold.json', 'fold': 1}, 'model_class': 'IMS2Trans', 'model_kwargs': {'num_cls': 4}, 'optimizer_class': 'Adam', 'optimizer': {'lr': 0.0016, 'weight_decay': 0.0001, 'betas': (0.9, 0.999), 'momentum': None, 'eps': 1e-08}, 'loss_class': 'IMS2TransLoss', 'loss_kwargs': {'num_classes': None, 'fuse_weight': 1.0, 'prm_weight': 1.0, 'dis_weight': 0.1, 'dis_temperature': 0.5, 'eps': 0.001, 'log_clamp_min': 0.005}, 'scheduler_class': 'PolynomialLR', 'scheduler_kwargs': {'total_iters': 1000, 'power': 0.9}, 'dataset_type': <DatasetType.BRATS23: 'brats23'>, 'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 128, 'debug': False, 'train_masking_mode': <MaskingMode.RANDOM: 'random'>, 'val_masking_mode': <MaskingMode.VALIDATION: 'validation'>, 'split_file': '/leonardo/home/userexternal/ocarpent/MiMoSe/src/mimose/data/splits/splits_5fold.json', '_wandb': {}}
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ims2trans23_fold1/wandb/offline-run-20260721_105202-0ov9gtnf/files/config.yaml
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| 1 |
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wandb_version: 1
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| 2 |
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| 3 |
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_wandb:
|
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desc: null
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value:
|
| 6 |
+
python_version: 3.12.13
|
| 7 |
+
cli_version: 0.26.1
|
| 8 |
+
framework: torch
|
| 9 |
+
is_jupyter_run: false
|
| 10 |
+
is_kaggle_kernel: false
|
| 11 |
+
start_time: 1784623922
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| 12 |
+
t:
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1:
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- 1
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| 15 |
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- 49
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2:
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- 1
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- 49
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3:
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- 4
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- 13
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- 16
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- 37
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- 42
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4: 3.12.13
|
| 26 |
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5: 0.26.1
|
| 27 |
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13: linux-x86_64
|
| 28 |
+
e:
|
| 29 |
+
r12yvidge2to62diqvzqg5k9bavtx9rl:
|
| 30 |
+
os: Linux-4.18.0-477.27.1.el8_8.x86_64-x86_64-with-glibc2.28
|
| 31 |
+
python: CPython 3.12.13
|
| 32 |
+
started_at: '2026-07-21T08:52:02.086938Z'
|
| 33 |
+
args:
|
| 34 |
+
- train
|
| 35 |
+
- --config
|
| 36 |
+
- ims2trans_23.yaml
|
| 37 |
+
- --fold
|
| 38 |
+
- '1'
|
| 39 |
+
- --run-suffix
|
| 40 |
+
- fold1
|
| 41 |
+
- --seed
|
| 42 |
+
- '0'
|
| 43 |
+
- --try-resume
|
| 44 |
+
program: /leonardo/home/userexternal/ocarpent/MiMoSe/.venv/bin/mimose
|
| 45 |
+
code_path: .venv/bin/mimose
|
| 46 |
+
code_path_local: .venv/bin/mimose
|
| 47 |
+
git:
|
| 48 |
+
remote_url: https://github.com/AImageLab-zip/MiMoSe
|
| 49 |
+
commit: 5d9e40a5b68c8a3bc487255d683a15ad2d5836a1
|
| 50 |
+
root: /leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1
|
| 51 |
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host: lrdn0066.leonardo.local
|
| 52 |
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executable: /leonardo/home/userexternal/ocarpent/MiMoSe/.venv/bin/python
|
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|
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|
| 58 |
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|
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|
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|
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|
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|
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|
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|
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conf: /var/spool/slurmd/conf-cache/slurm.conf
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|
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|
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submit_dir: /leonardo_work/IscrB_MEDSYN/mimose/runs/rfnet23_fold3/wandb
|
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|
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jobid: '50016060'
|
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job_num_nodes: '1'
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job_account: iscrb_medsyn
|
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job_uid: '130158'
|
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topology_addr_pattern: switch.switch.switch.node
|
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prio_process: '0'
|
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job_qos: normal
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|
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writer_id: r12yvidge2to62diqvzqg5k9bavtx9rl
|
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input_dir:
|
| 112 |
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|
| 113 |
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value: /leonardo_scratch/large/userexternal/ocarpent/mimose/ims2trans-preprocessed
|
| 114 |
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| 115 |
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|
| 116 |
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| 118 |
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|
| 119 |
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|
| 130 |
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|
| 131 |
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|
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|
| 133 |
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| 134 |
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|
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|
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|
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|
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|
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|
| 146 |
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|
| 147 |
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|
| 148 |
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split_file: /leonardo/home/userexternal/ocarpent/MiMoSe/src/mimose/data/splits/splits_5fold.json
|
| 149 |
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fold: 1
|
| 150 |
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model_class:
|
| 151 |
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desc: null
|
| 152 |
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value: IMS2Trans
|
| 153 |
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model_kwargs:
|
| 154 |
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desc: null
|
| 155 |
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value:
|
| 156 |
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|
| 157 |
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|
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|
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value: Adam
|
| 160 |
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optimizer:
|
| 161 |
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desc: null
|
| 162 |
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value:
|
| 163 |
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lr: 0.0016
|
| 164 |
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weight_decay: 0.0001
|
| 165 |
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betas:
|
| 166 |
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- 0.9
|
| 167 |
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- 0.999
|
| 168 |
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momentum: null
|
| 169 |
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eps: 1.0e-08
|
| 170 |
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loss_class:
|
| 171 |
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desc: null
|
| 172 |
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value: IMS2TransLoss
|
| 173 |
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loss_kwargs:
|
| 174 |
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desc: null
|
| 175 |
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value:
|
| 176 |
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|
| 177 |
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fuse_weight: 1.0
|
| 178 |
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|
| 179 |
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|
| 180 |
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|
| 181 |
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|
| 182 |
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log_clamp_min: 0.005
|
| 183 |
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scheduler_class:
|
| 184 |
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desc: null
|
| 185 |
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value: PolynomialLR
|
| 186 |
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scheduler_kwargs:
|
| 187 |
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|
| 188 |
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value:
|
| 189 |
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total_iters: 1000
|
| 190 |
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|
| 191 |
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dataset_type:
|
| 192 |
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desc: null
|
| 193 |
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value: BRATS23
|
| 194 |
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iter_per_epoch:
|
| 195 |
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desc: null
|
| 196 |
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value: null
|
| 197 |
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region_fusion_start_epoch:
|
| 198 |
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|
| 199 |
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|
| 200 |
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patch_size:
|
| 201 |
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|
| 202 |
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|
| 203 |
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debug:
|
| 204 |
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desc: null
|
| 205 |
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|
| 206 |
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train_masking_mode:
|
| 207 |
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|
| 208 |
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|
| 209 |
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val_masking_mode:
|
| 210 |
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|
| 211 |
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value: VALIDATION
|
| 212 |
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split_file:
|
| 213 |
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desc: null
|
| 214 |
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value: /leonardo/home/userexternal/ocarpent/MiMoSe/src/mimose/data/splits/splits_5fold.json
|
ims2trans23_fold1/wandb/offline-run-20260721_105202-0ov9gtnf/files/output.log
ADDED
|
File without changes
|
ims2trans23_fold1/wandb/offline-run-20260721_105202-0ov9gtnf/files/requirements.txt
ADDED
|
@@ -0,0 +1,95 @@
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|
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|
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|
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|
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|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
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|
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|
|
|
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|
|
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|
|
|
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|
|
|
|
|
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|
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|
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|
|
| 1 |
+
timm==1.0.22
|
| 2 |
+
MarkupSafe==3.0.3
|
| 3 |
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httpcore==1.0.9
|
| 4 |
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wandb==0.26.1
|
| 5 |
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pydantic_core==2.46.3
|
| 6 |
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shellingham==1.5.4
|
| 7 |
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platformdirs==4.9.6
|
| 8 |
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MedPy==0.5.2
|
| 9 |
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click==8.3.3
|
| 10 |
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contourpy==1.3.3
|
| 11 |
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safetensors==0.7.0
|
| 12 |
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Pygments==2.20.0
|
| 13 |
+
filelock==3.29.0
|
| 14 |
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torch==2.9.1
|
| 15 |
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GitPython==3.1.49
|
| 16 |
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pydantic==2.13.3
|
| 17 |
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sympy==1.14.0
|
| 18 |
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numpy==2.4.4
|
| 19 |
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rich==15.0.0
|
| 20 |
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hf-xet==1.4.3
|
| 21 |
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scipy==1.17.1
|
| 22 |
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h5py==3.16.0
|
| 23 |
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psutil==7.2.2
|
| 24 |
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ninja==1.13.0
|
| 25 |
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nvidia-cusparselt-cu12==0.7.1
|
| 26 |
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certifi==2026.4.22
|
| 27 |
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nvidia-cuda-nvrtc-cu12==12.8.93
|
| 28 |
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fsspec==2026.4.0
|
| 29 |
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tqdm==4.67.3
|
| 30 |
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charset-normalizer==3.4.7
|
| 31 |
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openpyxl==3.1.5
|
| 32 |
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typer==0.25.0
|
| 33 |
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dynamic_network_architectures==0.4.3
|
| 34 |
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pandas==3.0.2
|
| 35 |
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smmap==5.0.3
|
| 36 |
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torchvision==0.24.1
|
| 37 |
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pillow==12.2.0
|
| 38 |
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anyio==4.13.0
|
| 39 |
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matplotlib==3.10.9
|
| 40 |
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nvidia-cusolver-cu12==11.7.3.90
|
| 41 |
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nvidia-cudnn-cu12==9.10.2.21
|
| 42 |
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scikit-learn==1.8.0
|
| 43 |
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annotated-doc==0.0.4
|
| 44 |
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six==1.17.0
|
| 45 |
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einops==0.8.2
|
| 46 |
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threadpoolctl==3.6.0
|
| 47 |
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fonttools==4.62.1
|
| 48 |
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packaging==26.2
|
| 49 |
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et_xmlfile==2.0.0
|
| 50 |
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httpx==0.28.1
|
| 51 |
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requests==2.33.1
|
| 52 |
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urllib3==2.6.3
|
| 53 |
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nvidia-cufile-cu12==1.13.1.3
|
| 54 |
+
python-dateutil==2.9.0.post0
|
| 55 |
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ptflops==0.7.5
|
| 56 |
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kiwisolver==1.5.0
|
| 57 |
+
mpmath==1.3.0
|
| 58 |
+
huggingface_hub==1.13.0
|
| 59 |
+
nvidia-nvjitlink-cu12==12.8.93
|
| 60 |
+
annotated-types==0.7.0
|
| 61 |
+
nvidia-curand-cu12==10.3.9.90
|
| 62 |
+
nvidia-nvshmem-cu12==3.3.20
|
| 63 |
+
thop==0.1.1-2209072238
|
| 64 |
+
protobuf==6.33.6
|
| 65 |
+
simpleitk==2.5.4
|
| 66 |
+
nvidia-cuda-cupti-cu12==12.8.90
|
| 67 |
+
Jinja2==3.1.6
|
| 68 |
+
nvidia-cuda-runtime-cu12==12.8.90
|
| 69 |
+
MiMoSe==0.0.2
|
| 70 |
+
setuptools==82.0.1
|
| 71 |
+
joblib==1.5.3
|
| 72 |
+
nodeocc==1.0.26
|
| 73 |
+
mdurl==0.1.2
|
| 74 |
+
typing_extensions==4.15.0
|
| 75 |
+
cycler==0.12.1
|
| 76 |
+
wheel==0.47.0
|
| 77 |
+
PyYAML==6.0.3
|
| 78 |
+
idna==3.13
|
| 79 |
+
triton==3.5.1
|
| 80 |
+
wcwidth==0.6.0
|
| 81 |
+
nvidia-cublas-cu12==12.8.4.1
|
| 82 |
+
typing-inspection==0.4.2
|
| 83 |
+
nvidia-cufft-cu12==11.3.3.83
|
| 84 |
+
gitdb==4.0.12
|
| 85 |
+
nvidia-cusparse-cu12==12.5.8.93
|
| 86 |
+
ttkbootstrap==1.20.2
|
| 87 |
+
pyparsing==3.3.2
|
| 88 |
+
nvidia-nccl-cu12==2.27.5
|
| 89 |
+
networkx==3.6.1
|
| 90 |
+
h11==0.16.0
|
| 91 |
+
sentry-sdk==2.58.0
|
| 92 |
+
nvidia-nvtx-cu12==12.8.90
|
| 93 |
+
markdown-it-py==4.0.0
|
| 94 |
+
prompt_toolkit==3.0.52
|
| 95 |
+
MiMoSe==0.0.2
|
ims2trans23_fold1/wandb/offline-run-20260721_105202-0ov9gtnf/files/wandb-metadata.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"os": "Linux-4.18.0-477.27.1.el8_8.x86_64-x86_64-with-glibc2.28", "python": "CPython 3.12.13", "started_at": "2026-07-21T08:52:02.086938Z", "args": ["train", "--config", "ims2trans_23.yaml", "--fold", "1", "--run-suffix", "fold1", "--seed", "0", "--try-resume"], "program": "/leonardo/home/userexternal/ocarpent/MiMoSe/.venv/bin/mimose", "code_path": ".venv/bin/mimose", "code_path_local": ".venv/bin/mimose", "git": {"remote_url": "https://github.com/AImageLab-zip/MiMoSe", "commit": "5d9e40a5b68c8a3bc487255d683a15ad2d5836a1"}, "root": "/leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1", "host": "lrdn0066.leonardo.local", "executable": "/leonardo/home/userexternal/ocarpent/MiMoSe/.venv/bin/python", "cpu_count": 32, "cpu_count_logical": 32, "gpu_type": "NVIDIA A100-SXM-64GB", "gpu_count": 1, "disk": {"/": {"total": "12573614080", "used": "11914510336"}}, "memory": {"total": "539998437376"}, "gpu_nvidia": [{"name": "NVIDIA A100-SXM-64GB", "memory_total": "68719476736", "cuda_cores": 7936, "architecture": "Ampere", "uuid": "GPU-ac9db05a-cc5c-dd0a-c77e-9b7984ed1e2c"}], "cuda_version": "12.2", "slurm": {"job_user": "ocarpent", "nodeid": "0", "nodelist": "lrdn0066", "ntasks": "1", "cpus_on_node": "8", "mem_per_node": "102400", "tres_per_task": "cpu:8", "localid": "0", "submit_host": "login01.leonardo.local", "job_id": "50016060", "cpus_per_task": "8", "procid": "0", "job_gpus": "0", "job_cpus_per_node": "8", "cluster_name": "leonardo", "job_start_time": "1784623898", "job_nodelist": "lrdn0066", "conf": "/var/spool/slurmd/conf-cache/slurm.conf", "job_dependency": "singleton", "task_pid": "347066", "job_name": "IMS2TRANS23_FOLD_1", "job_gid": "25200", "script_context": "prolog_task", "gtids": "0", "gpus_on_node": "1", "topology_addr": "HeadSwitche.isw-L2-CELLG1.isw10300.lrdn0066", "nnodes": "1", "job_end_time": "1784710304", "tasks_per_node": "1", "submit_dir": "/leonardo_work/IscrB_MEDSYN/mimose/runs/rfnet23_fold3/wandb", "nprocs": "1", "jobid": "50016060", "job_num_nodes": "1", "job_account": "iscrb_medsyn", "job_uid": "130158", "topology_addr_pattern": "switch.switch.switch.node", "prio_process": "0", "job_qos": "normal", "job_partition": "boost_usr_prod"}, "writer_id": "r12yvidge2to62diqvzqg5k9bavtx9rl"}
|
ims2trans23_fold1/wandb/offline-run-20260721_105202-0ov9gtnf/files/wandb-summary.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"_runtime": 86510.729724033, "epoch": 295, "train/loss": 2.6147908289498147, "train/fusecross": 0.03616126300339852, "train/prmdice": 1.4626294057303613, "lr": 0.0011681273379638344, "_step": 294, "train/fusedice": 0.19299204469820774, "train/prmcross": 0.17448658065511546, "train/dis": 7.485215257067199, "_timestamp": 1784710433.3013523, "val/etpp": 0.6893055532796816, "val/et_hd95": 13.411719356960795, "val/dice": 0.7792812759117864, "val/wt_hd95": 7.861032800162284, "val/wt": 0.8623648858070394, "val/et": 0.6828284459222503, "val/etpp_hd95": 22.90678848244616, "val/loss": 0.27724068574607375, "val/tc": 0.7926504960060695, "val/tc_hd95": 11.338489651347512}
|
ims2trans23_fold1/wandb/offline-run-20260721_105202-0ov9gtnf/logs/debug-core.log
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
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ims2trans23_fold1/wandb/offline-run-20260721_105202-0ov9gtnf/logs/debug-internal.log
ADDED
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{"time":"2026-07-21T10:52:02.418742373+02:00","level":"INFO","msg":"wandb-core"}
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ims2trans23_fold1/wandb/offline-run-20260721_105202-0ov9gtnf/logs/debug.log
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| 5 |
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| 6 |
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2026-07-21 10:52:02,134 INFO MainThread:347071 [wandb_init.py:init():850] calling init triggers
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| 7 |
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2026-07-21 10:52:02,134 INFO MainThread:347071 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
|
| 8 |
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config: {'input_dir': '/leonardo_scratch/large/userexternal/ocarpent/mimose/ims2trans-preprocessed', 'output_dir': '/leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1', 'num_epochs': 1000, 'validation_every': 10, 'batch_size': 8, 'num_workers': 8, 'fp16': True, 'compile': False, 'seed': 0, 'custom_trainer_kwargs': {'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 128, 'debug': False, 'transform_kind': 'imfuse', 'train_masking_mode': 'random', 'val_masking_mode': 'validation', 'split_file': '/leonardo/home/userexternal/ocarpent/MiMoSe/src/mimose/data/splits/splits_5fold.json', 'fold': 1}, 'model_class': 'IMS2Trans', 'model_kwargs': {'num_cls': 4}, 'optimizer_class': 'Adam', 'optimizer': {'lr': 0.0016, 'weight_decay': 0.0001, 'betas': (0.9, 0.999), 'momentum': None, 'eps': 1e-08}, 'loss_class': 'IMS2TransLoss', 'loss_kwargs': {'num_classes': None, 'fuse_weight': 1.0, 'prm_weight': 1.0, 'dis_weight': 0.1, 'dis_temperature': 0.5, 'eps': 0.001, 'log_clamp_min': 0.005}, 'scheduler_class': 'PolynomialLR', 'scheduler_kwargs': {'total_iters': 1000, 'power': 0.9}, 'dataset_type': <DatasetType.BRATS23: 'brats23'>, 'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 128, 'debug': False, 'train_masking_mode': <MaskingMode.RANDOM: 'random'>, 'val_masking_mode': <MaskingMode.VALIDATION: 'validation'>, 'split_file': '/leonardo/home/userexternal/ocarpent/MiMoSe/src/mimose/data/splits/splits_5fold.json', '_wandb': {}}
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ims2trans23_fold1/wandb/offline-run-20260721_105202-0ov9gtnf/run-0ov9gtnf.wandb
ADDED
|
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version https://git-lfs.github.com/spec/v1
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size 5242880
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ims2trans23_fold1/wandb/offline-run-20260722_110248-0ov9gtnf/files/config.yaml
ADDED
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|
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|
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|
|
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|
|
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|
|
|
|
|
|
| 1 |
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wandb_version: 1
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| 2 |
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|
| 3 |
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_wandb:
|
| 4 |
+
desc: null
|
| 5 |
+
value:
|
| 6 |
+
python_version: 3.12.13
|
| 7 |
+
cli_version: 0.26.1
|
| 8 |
+
framework: torch
|
| 9 |
+
is_jupyter_run: false
|
| 10 |
+
is_kaggle_kernel: false
|
| 11 |
+
start_time: 1784710968
|
| 12 |
+
t:
|
| 13 |
+
1:
|
| 14 |
+
- 1
|
| 15 |
+
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|
| 16 |
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2:
|
| 17 |
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|
| 18 |
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|
| 19 |
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|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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|
| 24 |
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|
| 25 |
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- 42
|
| 26 |
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4: 3.12.13
|
| 27 |
+
5: 0.26.1
|
| 28 |
+
13: linux-x86_64
|
| 29 |
+
e:
|
| 30 |
+
lfpwvv74t2x10vhqaoxi2qwri4lo76mm:
|
| 31 |
+
os: Linux-4.18.0-477.27.1.el8_8.x86_64-x86_64-with-glibc2.28
|
| 32 |
+
python: CPython 3.12.13
|
| 33 |
+
started_at: '2026-07-22T09:02:48.224690Z'
|
| 34 |
+
args:
|
| 35 |
+
- train
|
| 36 |
+
- --config
|
| 37 |
+
- ims2trans_23.yaml
|
| 38 |
+
- --fold
|
| 39 |
+
- '1'
|
| 40 |
+
- --run-suffix
|
| 41 |
+
- fold1
|
| 42 |
+
- --seed
|
| 43 |
+
- '0'
|
| 44 |
+
- --try-resume
|
| 45 |
+
program: /leonardo/home/userexternal/ocarpent/MiMoSe/.venv/bin/mimose
|
| 46 |
+
code_path: .venv/bin/mimose
|
| 47 |
+
code_path_local: .venv/bin/mimose
|
| 48 |
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git:
|
| 49 |
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remote_url: https://github.com/AImageLab-zip/MiMoSe
|
| 50 |
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commit: 5d9e40a5b68c8a3bc487255d683a15ad2d5836a1
|
| 51 |
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root: /leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1
|
| 52 |
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host: lrdn0066.leonardo.local
|
| 53 |
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executable: /leonardo/home/userexternal/ocarpent/MiMoSe/.venv/bin/python
|
| 54 |
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cpu_count: 32
|
| 55 |
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cpu_count_logical: 32
|
| 56 |
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gpu_type: NVIDIA A100-SXM-64GB
|
| 57 |
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gpu_count: 1
|
| 58 |
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disk:
|
| 59 |
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/:
|
| 60 |
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total: '12573614080'
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| 61 |
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used: '11915567104'
|
| 62 |
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memory:
|
| 63 |
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total: '539998437376'
|
| 64 |
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gpu_nvidia:
|
| 65 |
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- name: NVIDIA A100-SXM-64GB
|
| 66 |
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memory_total: '68719476736'
|
| 67 |
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cuda_cores: 7936
|
| 68 |
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architecture: Ampere
|
| 69 |
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uuid: GPU-ac9db05a-cc5c-dd0a-c77e-9b7984ed1e2c
|
| 70 |
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cuda_version: '12.2'
|
| 71 |
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slurm:
|
| 72 |
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job_user: ocarpent
|
| 73 |
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nodeid: '0'
|
| 74 |
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nodelist: lrdn0066
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| 75 |
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ntasks: '1'
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| 76 |
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cpus_on_node: '8'
|
| 77 |
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tres_per_task: cpu:8
|
| 78 |
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mem_per_node: '102400'
|
| 79 |
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localid: '0'
|
| 80 |
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procid: '0'
|
| 81 |
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job_id: '50016068'
|
| 82 |
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cpus_per_task: '8'
|
| 83 |
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submit_host: login01.leonardo.local
|
| 84 |
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job_gpus: '0'
|
| 85 |
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job_cpus_per_node: '8'
|
| 86 |
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cluster_name: leonardo
|
| 87 |
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job_start_time: '1784710951'
|
| 88 |
+
conf: /var/spool/slurmd/conf-cache/slurm.conf
|
| 89 |
+
job_nodelist: lrdn0066
|
| 90 |
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task_pid: '382260'
|
| 91 |
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job_dependency: singleton
|
| 92 |
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topology_addr: HeadSwitche.isw-L2-CELLG1.isw10300.lrdn0066
|
| 93 |
+
gtids: '0'
|
| 94 |
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script_context: prolog_task
|
| 95 |
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gpus_on_node: '1'
|
| 96 |
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job_name: IMS2TRANS23_FOLD_1
|
| 97 |
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job_gid: '25200'
|
| 98 |
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nnodes: '1'
|
| 99 |
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job_end_time: '1784797354'
|
| 100 |
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tasks_per_node: '1'
|
| 101 |
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submit_dir: /leonardo_work/IscrB_MEDSYN/mimose/runs/rfnet23_fold3/wandb
|
| 102 |
+
job_uid: '130158'
|
| 103 |
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jobid: '50016068'
|
| 104 |
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job_num_nodes: '1'
|
| 105 |
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job_account: iscrb_medsyn
|
| 106 |
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nprocs: '1'
|
| 107 |
+
prio_process: '0'
|
| 108 |
+
topology_addr_pattern: switch.switch.switch.node
|
| 109 |
+
job_qos: normal
|
| 110 |
+
job_partition: boost_usr_prod
|
| 111 |
+
writer_id: lfpwvv74t2x10vhqaoxi2qwri4lo76mm
|
| 112 |
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input_dir:
|
| 113 |
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desc: null
|
| 114 |
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value: /leonardo_scratch/large/userexternal/ocarpent/mimose/ims2trans-preprocessed
|
| 115 |
+
output_dir:
|
| 116 |
+
desc: null
|
| 117 |
+
value: /leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1
|
| 118 |
+
num_epochs:
|
| 119 |
+
desc: null
|
| 120 |
+
value: 1000
|
| 121 |
+
validation_every:
|
| 122 |
+
desc: null
|
| 123 |
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value: 10
|
| 124 |
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batch_size:
|
| 125 |
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desc: null
|
| 126 |
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value: 8
|
| 127 |
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num_workers:
|
| 128 |
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desc: null
|
| 129 |
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value: 8
|
| 130 |
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|
| 131 |
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desc: null
|
| 132 |
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|
| 133 |
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compile:
|
| 134 |
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desc: null
|
| 135 |
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value: false
|
| 136 |
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seed:
|
| 137 |
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| 138 |
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|
| 139 |
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custom_trainer_kwargs:
|
| 140 |
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desc: null
|
| 141 |
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value:
|
| 142 |
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|
| 143 |
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region_fusion_start_epoch: 0
|
| 144 |
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patch_size: 128
|
| 145 |
+
debug: false
|
| 146 |
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transform_kind: imfuse
|
| 147 |
+
train_masking_mode: random
|
| 148 |
+
val_masking_mode: validation
|
| 149 |
+
split_file: /leonardo/home/userexternal/ocarpent/MiMoSe/src/mimose/data/splits/splits_5fold.json
|
| 150 |
+
fold: 1
|
| 151 |
+
model_class:
|
| 152 |
+
desc: null
|
| 153 |
+
value: IMS2Trans
|
| 154 |
+
model_kwargs:
|
| 155 |
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desc: null
|
| 156 |
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value:
|
| 157 |
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num_cls: 4
|
| 158 |
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optimizer_class:
|
| 159 |
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desc: null
|
| 160 |
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value: Adam
|
| 161 |
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optimizer:
|
| 162 |
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desc: null
|
| 163 |
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value:
|
| 164 |
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lr: 0.0016
|
| 165 |
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weight_decay: 0.0001
|
| 166 |
+
betas:
|
| 167 |
+
- 0.9
|
| 168 |
+
- 0.999
|
| 169 |
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momentum: null
|
| 170 |
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eps: 1.0e-08
|
| 171 |
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loss_class:
|
| 172 |
+
desc: null
|
| 173 |
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value: IMS2TransLoss
|
| 174 |
+
loss_kwargs:
|
| 175 |
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desc: null
|
| 176 |
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value:
|
| 177 |
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num_classes: null
|
| 178 |
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fuse_weight: 1.0
|
| 179 |
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prm_weight: 1.0
|
| 180 |
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dis_weight: 0.1
|
| 181 |
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dis_temperature: 0.5
|
| 182 |
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eps: 0.001
|
| 183 |
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log_clamp_min: 0.005
|
| 184 |
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scheduler_class:
|
| 185 |
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desc: null
|
| 186 |
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value: PolynomialLR
|
| 187 |
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scheduler_kwargs:
|
| 188 |
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desc: null
|
| 189 |
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value:
|
| 190 |
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total_iters: 1000
|
| 191 |
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power: 0.9
|
| 192 |
+
dataset_type:
|
| 193 |
+
desc: null
|
| 194 |
+
value: BRATS23
|
| 195 |
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iter_per_epoch:
|
| 196 |
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desc: null
|
| 197 |
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value: null
|
| 198 |
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region_fusion_start_epoch:
|
| 199 |
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desc: null
|
| 200 |
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value: 0
|
| 201 |
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patch_size:
|
| 202 |
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desc: null
|
| 203 |
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value: 128
|
| 204 |
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debug:
|
| 205 |
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desc: null
|
| 206 |
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value: false
|
| 207 |
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train_masking_mode:
|
| 208 |
+
desc: null
|
| 209 |
+
value: RANDOM
|
| 210 |
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val_masking_mode:
|
| 211 |
+
desc: null
|
| 212 |
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value: VALIDATION
|
| 213 |
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split_file:
|
| 214 |
+
desc: null
|
| 215 |
+
value: /leonardo/home/userexternal/ocarpent/MiMoSe/src/mimose/data/splits/splits_5fold.json
|
ims2trans23_fold1/wandb/offline-run-20260722_110248-0ov9gtnf/files/output.log
ADDED
|
File without changes
|
ims2trans23_fold1/wandb/offline-run-20260722_110248-0ov9gtnf/files/requirements.txt
ADDED
|
@@ -0,0 +1,95 @@
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|
|
|
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|
|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
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|
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|
|
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|
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|
| 1 |
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timm==1.0.22
|
| 2 |
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MarkupSafe==3.0.3
|
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httpcore==1.0.9
|
| 4 |
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wandb==0.26.1
|
| 5 |
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pydantic_core==2.46.3
|
| 6 |
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shellingham==1.5.4
|
| 7 |
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platformdirs==4.9.6
|
| 8 |
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MedPy==0.5.2
|
| 9 |
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click==8.3.3
|
| 10 |
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contourpy==1.3.3
|
| 11 |
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safetensors==0.7.0
|
| 12 |
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Pygments==2.20.0
|
| 13 |
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filelock==3.29.0
|
| 14 |
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torch==2.9.1
|
| 15 |
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GitPython==3.1.49
|
| 16 |
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pydantic==2.13.3
|
| 17 |
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sympy==1.14.0
|
| 18 |
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numpy==2.4.4
|
| 19 |
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rich==15.0.0
|
| 20 |
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hf-xet==1.4.3
|
| 21 |
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scipy==1.17.1
|
| 22 |
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h5py==3.16.0
|
| 23 |
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psutil==7.2.2
|
| 24 |
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ninja==1.13.0
|
| 25 |
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nvidia-cusparselt-cu12==0.7.1
|
| 26 |
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certifi==2026.4.22
|
| 27 |
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nvidia-cuda-nvrtc-cu12==12.8.93
|
| 28 |
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fsspec==2026.4.0
|
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tqdm==4.67.3
|
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charset-normalizer==3.4.7
|
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openpyxl==3.1.5
|
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typer==0.25.0
|
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dynamic_network_architectures==0.4.3
|
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pandas==3.0.2
|
| 35 |
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smmap==5.0.3
|
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torchvision==0.24.1
|
| 37 |
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pillow==12.2.0
|
| 38 |
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anyio==4.13.0
|
| 39 |
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matplotlib==3.10.9
|
| 40 |
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nvidia-cusolver-cu12==11.7.3.90
|
| 41 |
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nvidia-cudnn-cu12==9.10.2.21
|
| 42 |
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scikit-learn==1.8.0
|
| 43 |
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annotated-doc==0.0.4
|
| 44 |
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six==1.17.0
|
| 45 |
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einops==0.8.2
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| 46 |
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threadpoolctl==3.6.0
|
| 47 |
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fonttools==4.62.1
|
| 48 |
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packaging==26.2
|
| 49 |
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et_xmlfile==2.0.0
|
| 50 |
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httpx==0.28.1
|
| 51 |
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requests==2.33.1
|
| 52 |
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urllib3==2.6.3
|
| 53 |
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nvidia-cufile-cu12==1.13.1.3
|
| 54 |
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python-dateutil==2.9.0.post0
|
| 55 |
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ptflops==0.7.5
|
| 56 |
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kiwisolver==1.5.0
|
| 57 |
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mpmath==1.3.0
|
| 58 |
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huggingface_hub==1.13.0
|
| 59 |
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nvidia-nvjitlink-cu12==12.8.93
|
| 60 |
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annotated-types==0.7.0
|
| 61 |
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nvidia-curand-cu12==10.3.9.90
|
| 62 |
+
nvidia-nvshmem-cu12==3.3.20
|
| 63 |
+
thop==0.1.1-2209072238
|
| 64 |
+
protobuf==6.33.6
|
| 65 |
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simpleitk==2.5.4
|
| 66 |
+
nvidia-cuda-cupti-cu12==12.8.90
|
| 67 |
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Jinja2==3.1.6
|
| 68 |
+
nvidia-cuda-runtime-cu12==12.8.90
|
| 69 |
+
MiMoSe==0.0.2
|
| 70 |
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setuptools==82.0.1
|
| 71 |
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joblib==1.5.3
|
| 72 |
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nodeocc==1.0.26
|
| 73 |
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mdurl==0.1.2
|
| 74 |
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typing_extensions==4.15.0
|
| 75 |
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cycler==0.12.1
|
| 76 |
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wheel==0.47.0
|
| 77 |
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PyYAML==6.0.3
|
| 78 |
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idna==3.13
|
| 79 |
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triton==3.5.1
|
| 80 |
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wcwidth==0.6.0
|
| 81 |
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nvidia-cublas-cu12==12.8.4.1
|
| 82 |
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typing-inspection==0.4.2
|
| 83 |
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nvidia-cufft-cu12==11.3.3.83
|
| 84 |
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gitdb==4.0.12
|
| 85 |
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nvidia-cusparse-cu12==12.5.8.93
|
| 86 |
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ttkbootstrap==1.20.2
|
| 87 |
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pyparsing==3.3.2
|
| 88 |
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nvidia-nccl-cu12==2.27.5
|
| 89 |
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networkx==3.6.1
|
| 90 |
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h11==0.16.0
|
| 91 |
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sentry-sdk==2.58.0
|
| 92 |
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nvidia-nvtx-cu12==12.8.90
|
| 93 |
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markdown-it-py==4.0.0
|
| 94 |
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prompt_toolkit==3.0.52
|
| 95 |
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MiMoSe==0.0.2
|
ims2trans23_fold1/wandb/offline-run-20260722_110248-0ov9gtnf/files/wandb-metadata.json
ADDED
|
@@ -0,0 +1 @@
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ims2trans23_fold1/wandb/offline-run-20260722_110248-0ov9gtnf/files/wandb-summary.json
ADDED
|
@@ -0,0 +1 @@
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| 1 |
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{"_runtime": 86773.768211234, "epoch": 590, "train/loss": 2.533839914776863, "train/fusecross": 0.034564336394429754, "train/fusedice": 0.18677317768061927, "train/prmdice": 1.395951308241678, "train/dis": 7.56120361100643, "lr": 0.0007171755145942555, "train/prmcross": 0.1604307135310742, "_timestamp": 1784797742.4109118, "_step": 293, "val/etpp": 0.6979490926525899, "val/wt_hd95": 6.879219772123081, "val/tc_hd95": 15.678478380638701, "val/etpp_hd95": 22.566465053002112, "val/tc": 0.7948299024926118, "val/et": 0.6979490926525187, "val/dice": 0.7886310407680837, "val/loss": 0.2674899259507656, "val/et_hd95": 17.95879704125682, "val/wt": 0.8731141271591202}
|
ims2trans23_fold1/wandb/offline-run-20260722_110248-0ov9gtnf/logs/debug-core.log
ADDED
|
@@ -0,0 +1,6 @@
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{"time":"2026-07-22T11:02:48.328231876+02:00","level":"INFO","msg":"main: starting server","port-filename":"/tmp/tmpebtof4_4/port-382265.txt","pid":382265,"detached":false,"idle-timeout":600000000000,"log-level":0,"disable-analytics":false,"shutdown-on-parent-exit":false,"enable-dcgm-profiling":false}
|
| 2 |
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{"time":"2026-07-22T11:02:48.328639454+02:00","level":"INFO","msg":"server: will exit if parent process dies","ppid":382265}
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| 3 |
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{"time":"2026-07-22T11:02:48.32858993+02:00","level":"INFO","msg":"server: accepting connections","addr":{"Name":"/tmp/wandb-382265-382300-3505093547/socket","Net":"unix"}}
|
| 4 |
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{"time":"2026-07-22T11:02:48.489345177+02:00","level":"INFO","msg":"connection: ManageConnectionData: new connection created","id":"1(@)"}
|
| 5 |
+
{"time":"2026-07-22T11:02:48.49732972+02:00","level":"INFO","msg":"handleInformInit: received","streamId":"0ov9gtnf","id":"1(@)"}
|
| 6 |
+
{"time":"2026-07-22T11:02:48.621053232+02:00","level":"INFO","msg":"handleInformInit: stream started","streamId":"0ov9gtnf","id":"1(@)"}
|
ims2trans23_fold1/wandb/offline-run-20260722_110248-0ov9gtnf/logs/debug-internal.log
ADDED
|
@@ -0,0 +1,11 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{"time":"2026-07-22T11:02:48.497957326+02:00","level":"INFO","msg":"wandb-core"}
|
| 2 |
+
{"time":"2026-07-22T11:02:48.498126502+02:00","level":"INFO","msg":"stream: starting","core version":"0.26.1"}
|
| 3 |
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{"time":"2026-07-22T11:02:48.619990423+02:00","level":"WARN","msg":"featurechecker: GraphQL client is nil, skipping feature loading"}
|
| 4 |
+
{"time":"2026-07-22T11:02:48.620045062+02:00","level":"WARN","msg":"featurechecker: GraphQL client is nil, skipping feature loading"}
|
| 5 |
+
{"time":"2026-07-22T11:02:48.620086257+02:00","level":"INFO","msg":"stream: created new stream","id":"0ov9gtnf"}
|
| 6 |
+
{"time":"2026-07-22T11:02:48.620129595+02:00","level":"INFO","msg":"handler: started"}
|
| 7 |
+
{"time":"2026-07-22T11:02:48.621034439+02:00","level":"INFO","msg":"stream: started"}
|
| 8 |
+
{"time":"2026-07-22T11:02:48.621045933+02:00","level":"INFO","msg":"writer: started","stream_id":"0ov9gtnf"}
|
| 9 |
+
{"time":"2026-07-22T11:02:48.621057133+02:00","level":"INFO","msg":"sender: started"}
|
| 10 |
+
{"time":"2026-07-22T11:02:48.641619538+02:00","level":"WARN","msg":"featurechecker: GraphQL client is nil, skipping feature loading"}
|
| 11 |
+
{"time":"2026-07-22T11:02:48.641649182+02:00","level":"WARN","msg":"runupserter: server does not expand metric globs but the x_server_side_expand_glob_metrics setting is set; ignoring"}
|
ims2trans23_fold1/wandb/offline-run-20260722_110248-0ov9gtnf/logs/debug.log
ADDED
|
@@ -0,0 +1,19 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
| 1 |
+
2026-07-22 11:02:48,231 INFO MainThread:382265 [wandb_setup.py:_flush():81] Current SDK version is 0.26.1
|
| 2 |
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2026-07-22 11:02:48,231 INFO MainThread:382265 [wandb_setup.py:_flush():81] Configure stats pid to 382265
|
| 3 |
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2026-07-22 11:02:48,232 INFO MainThread:382265 [wandb_setup.py:_flush():81] Loading settings from environment variables
|
| 4 |
+
2026-07-22 11:02:48,232 INFO MainThread:382265 [wandb_init.py:setup_run_log_directory():723] Logging user logs to /leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1/wandb/offline-run-20260722_110248-0ov9gtnf/logs/debug.log
|
| 5 |
+
2026-07-22 11:02:48,232 INFO MainThread:382265 [wandb_init.py:setup_run_log_directory():724] Logging internal logs to /leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1/wandb/offline-run-20260722_110248-0ov9gtnf/logs/debug-internal.log
|
| 6 |
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2026-07-22 11:02:48,232 INFO MainThread:382265 [wandb_init.py:init():850] calling init triggers
|
| 7 |
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2026-07-22 11:02:48,232 INFO MainThread:382265 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
|
| 8 |
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config: {'input_dir': '/leonardo_scratch/large/userexternal/ocarpent/mimose/ims2trans-preprocessed', 'output_dir': '/leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1', 'num_epochs': 1000, 'validation_every': 10, 'batch_size': 8, 'num_workers': 8, 'fp16': True, 'compile': False, 'seed': 0, 'custom_trainer_kwargs': {'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 128, 'debug': False, 'transform_kind': 'imfuse', 'train_masking_mode': 'random', 'val_masking_mode': 'validation', 'split_file': '/leonardo/home/userexternal/ocarpent/MiMoSe/src/mimose/data/splits/splits_5fold.json', 'fold': 1}, 'model_class': 'IMS2Trans', 'model_kwargs': {'num_cls': 4}, 'optimizer_class': 'Adam', 'optimizer': {'lr': 0.0016, 'weight_decay': 0.0001, 'betas': (0.9, 0.999), 'momentum': None, 'eps': 1e-08}, 'loss_class': 'IMS2TransLoss', 'loss_kwargs': {'num_classes': None, 'fuse_weight': 1.0, 'prm_weight': 1.0, 'dis_weight': 0.1, 'dis_temperature': 0.5, 'eps': 0.001, 'log_clamp_min': 0.005}, 'scheduler_class': 'PolynomialLR', 'scheduler_kwargs': {'total_iters': 1000, 'power': 0.9}, 'dataset_type': <DatasetType.BRATS23: 'brats23'>, 'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 128, 'debug': False, 'train_masking_mode': <MaskingMode.RANDOM: 'random'>, 'val_masking_mode': <MaskingMode.VALIDATION: 'validation'>, 'split_file': '/leonardo/home/userexternal/ocarpent/MiMoSe/src/mimose/data/splits/splits_5fold.json', '_wandb': {}}
|
| 9 |
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2026-07-22 11:02:48,232 INFO MainThread:382265 [wandb_init.py:init():898] starting backend
|
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2026-07-22 11:02:48,489 INFO MainThread:382265 [wandb_init.py:init():913] sending inform_init request
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2026-07-22 11:02:48,621 INFO MainThread:382265 [wandb_init.py:init():918] backend started and connected
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2026-07-22 11:02:48,622 INFO MainThread:382265 [wandb_init.py:init():988] updated telemetry
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2026-07-22 11:02:48,640 INFO MainThread:382265 [wandb_init.py:init():1011] communicating run to backend with 90.0 second timeout
|
| 14 |
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2026-07-22 11:02:48,642 INFO MainThread:382265 [wandb_init.py:init():1056] starting run threads in backend
|
| 15 |
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2026-07-22 11:02:48,794 INFO MainThread:382265 [wandb_run.py:_console_start():2554] atexit reg
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2026-07-22 11:02:48,795 INFO MainThread:382265 [wandb_run.py:_redirect():2403] redirect: wrap_raw
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2026-07-22 11:02:48,795 INFO MainThread:382265 [wandb_run.py:_redirect():2472] Wrapping output streams.
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2026-07-22 11:02:48,795 INFO MainThread:382265 [wandb_run.py:_redirect():2495] Redirects installed.
|
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2026-07-22 11:02:48,798 INFO MainThread:382265 [wandb_init.py:init():1094] run started, returning control to user process
|
ims2trans23_fold1/wandb/offline-run-20260722_110248-0ov9gtnf/run-0ov9gtnf.wandb
ADDED
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version https://git-lfs.github.com/spec/v1
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size 5242880
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ims2trans23_fold1/wandb/offline-run-20260723_111322-0ov9gtnf/files/config.yaml
ADDED
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|
| 1 |
+
wandb_version: 1
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| 2 |
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|
| 3 |
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_wandb:
|
| 4 |
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desc: null
|
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value:
|
| 6 |
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python_version: 3.12.13
|
| 7 |
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cli_version: 0.26.1
|
| 8 |
+
framework: torch
|
| 9 |
+
is_jupyter_run: false
|
| 10 |
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is_kaggle_kernel: false
|
| 11 |
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start_time: 1784798003
|
| 12 |
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t:
|
| 13 |
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1:
|
| 14 |
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|
| 15 |
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|
| 16 |
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|
| 17 |
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|
| 18 |
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| 19 |
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|
| 20 |
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|
| 21 |
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|
| 22 |
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- 14
|
| 23 |
+
- 16
|
| 24 |
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- 37
|
| 25 |
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- 42
|
| 26 |
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4: 3.12.13
|
| 27 |
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5: 0.26.1
|
| 28 |
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13: linux-x86_64
|
| 29 |
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e:
|
| 30 |
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cnlu83fp02d7rf1aufxq7jla5zpe3x25:
|
| 31 |
+
os: Linux-4.18.0-477.27.1.el8_8.x86_64-x86_64-with-glibc2.28
|
| 32 |
+
python: CPython 3.12.13
|
| 33 |
+
started_at: '2026-07-23T09:13:22.884453Z'
|
| 34 |
+
args:
|
| 35 |
+
- train
|
| 36 |
+
- --config
|
| 37 |
+
- ims2trans_23.yaml
|
| 38 |
+
- --fold
|
| 39 |
+
- '1'
|
| 40 |
+
- --run-suffix
|
| 41 |
+
- fold1
|
| 42 |
+
- --seed
|
| 43 |
+
- '0'
|
| 44 |
+
- --try-resume
|
| 45 |
+
program: /leonardo/home/userexternal/ocarpent/MiMoSe/.venv/bin/mimose
|
| 46 |
+
code_path: .venv/bin/mimose
|
| 47 |
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code_path_local: .venv/bin/mimose
|
| 48 |
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git:
|
| 49 |
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remote_url: https://github.com/AImageLab-zip/MiMoSe
|
| 50 |
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commit: 5d9e40a5b68c8a3bc487255d683a15ad2d5836a1
|
| 51 |
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root: /leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1
|
| 52 |
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host: lrdn0022.leonardo.local
|
| 53 |
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executable: /leonardo/home/userexternal/ocarpent/MiMoSe/.venv/bin/python
|
| 54 |
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cpu_count: 32
|
| 55 |
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cpu_count_logical: 32
|
| 56 |
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gpu_type: NVIDIA A100-SXM-64GB
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gpu_count: 1
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disk:
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/:
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total: '12573614080'
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used: '11974516736'
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memory:
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total: '539998437376'
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| 64 |
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gpu_nvidia:
|
| 65 |
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- name: NVIDIA A100-SXM-64GB
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| 66 |
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memory_total: '68719476736'
|
| 67 |
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cuda_cores: 7936
|
| 68 |
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architecture: Ampere
|
| 69 |
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uuid: GPU-6f2506a5-47f5-4d74-fc6f-3852ca681480
|
| 70 |
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cuda_version: '12.2'
|
| 71 |
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slurm:
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| 72 |
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job_user: ocarpent
|
| 73 |
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nodeid: '0'
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| 74 |
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nodelist: lrdn0022
|
| 75 |
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ntasks: '1'
|
| 76 |
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cpus_on_node: '8'
|
| 77 |
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tres_per_task: cpu:8
|
| 78 |
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mem_per_node: '102400'
|
| 79 |
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localid: '0'
|
| 80 |
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procid: '0'
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| 81 |
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job_id: '50016069'
|
| 82 |
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cpus_per_task: '8'
|
| 83 |
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submit_host: login01.leonardo.local
|
| 84 |
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job_gpus: '2'
|
| 85 |
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job_cpus_per_node: '8'
|
| 86 |
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cluster_name: leonardo
|
| 87 |
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job_start_time: '1784797986'
|
| 88 |
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conf: /var/spool/slurmd/conf-cache/slurm.conf
|
| 89 |
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job_nodelist: lrdn0022
|
| 90 |
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task_pid: '3931410'
|
| 91 |
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job_dependency: singleton
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| 92 |
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topology_addr: HeadSwitche.isw-L2-CELLG1.isw10102.lrdn0022
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| 93 |
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gtids: '0'
|
| 94 |
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script_context: prolog_task
|
| 95 |
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gpus_on_node: '1'
|
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job_name: IMS2TRANS23_FOLD_1
|
| 97 |
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job_gid: '25200'
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nnodes: '1'
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submit_dir: /leonardo_work/IscrB_MEDSYN/mimose/runs/rfnet23_fold3/wandb
|
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tasks_per_node: '1'
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job_uid: '130158'
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job_account: iscrb_medsyn
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prio_process: '0'
|
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topology_addr_pattern: switch.switch.switch.node
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job_qos: normal
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job_partition: boost_usr_prod
|
| 111 |
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writer_id: cnlu83fp02d7rf1aufxq7jla5zpe3x25
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input_dir:
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| 113 |
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desc: null
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| 114 |
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value: /leonardo_scratch/large/userexternal/ocarpent/mimose/ims2trans-preprocessed
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| 115 |
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output_dir:
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| 116 |
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desc: null
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| 117 |
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value: /leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1
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desc: null
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value: 1000
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validation_every:
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desc: null
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value: 10
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value: 8
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num_workers:
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| 128 |
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desc: null
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value: 8
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desc: null
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value: true
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| 133 |
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compile:
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| 134 |
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desc: null
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| 135 |
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value: false
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seed:
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desc: null
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value: 0
|
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custom_trainer_kwargs:
|
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desc: null
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value:
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iter_per_epoch: null
|
| 143 |
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region_fusion_start_epoch: 0
|
| 144 |
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patch_size: 128
|
| 145 |
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debug: false
|
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transform_kind: imfuse
|
| 147 |
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train_masking_mode: random
|
| 148 |
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val_masking_mode: validation
|
| 149 |
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split_file: /leonardo/home/userexternal/ocarpent/MiMoSe/src/mimose/data/splits/splits_5fold.json
|
| 150 |
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fold: 1
|
| 151 |
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model_class:
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desc: null
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value: IMS2Trans
|
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model_kwargs:
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desc: null
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value:
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num_cls: 4
|
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desc: null
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value: Adam
|
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optimizer:
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desc: null
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value:
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lr: 0.0016
|
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weight_decay: 0.0001
|
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betas:
|
| 167 |
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- 0.9
|
| 168 |
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- 0.999
|
| 169 |
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momentum: null
|
| 170 |
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eps: 1.0e-08
|
| 171 |
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loss_class:
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| 172 |
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desc: null
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value: IMS2TransLoss
|
| 174 |
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loss_kwargs:
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desc: null
|
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value:
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| 177 |
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num_classes: null
|
| 178 |
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fuse_weight: 1.0
|
| 179 |
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prm_weight: 1.0
|
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dis_weight: 0.1
|
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dis_temperature: 0.5
|
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eps: 0.001
|
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log_clamp_min: 0.005
|
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scheduler_class:
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| 185 |
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desc: null
|
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value: PolynomialLR
|
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scheduler_kwargs:
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desc: null
|
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value:
|
| 190 |
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total_iters: 1000
|
| 191 |
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power: 0.9
|
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dataset_type:
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| 193 |
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desc: null
|
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value: BRATS23
|
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iter_per_epoch:
|
| 196 |
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desc: null
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value: null
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region_fusion_start_epoch:
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value: 0
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patch_size:
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desc: null
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value: 128
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debug:
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desc: null
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value: false
|
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train_masking_mode:
|
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desc: null
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value: RANDOM
|
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val_masking_mode:
|
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desc: null
|
| 212 |
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value: VALIDATION
|
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split_file:
|
| 214 |
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desc: null
|
| 215 |
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value: /leonardo/home/userexternal/ocarpent/MiMoSe/src/mimose/data/splits/splits_5fold.json
|
ims2trans23_fold1/wandb/offline-run-20260723_111322-0ov9gtnf/files/output.log
ADDED
|
File without changes
|
ims2trans23_fold1/wandb/offline-run-20260723_111322-0ov9gtnf/files/requirements.txt
ADDED
|
@@ -0,0 +1,95 @@
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
timm==1.0.22
|
| 2 |
+
MarkupSafe==3.0.3
|
| 3 |
+
httpcore==1.0.9
|
| 4 |
+
wandb==0.26.1
|
| 5 |
+
pydantic_core==2.46.3
|
| 6 |
+
shellingham==1.5.4
|
| 7 |
+
platformdirs==4.9.6
|
| 8 |
+
MedPy==0.5.2
|
| 9 |
+
click==8.3.3
|
| 10 |
+
contourpy==1.3.3
|
| 11 |
+
safetensors==0.7.0
|
| 12 |
+
Pygments==2.20.0
|
| 13 |
+
filelock==3.29.0
|
| 14 |
+
torch==2.9.1
|
| 15 |
+
GitPython==3.1.49
|
| 16 |
+
pydantic==2.13.3
|
| 17 |
+
sympy==1.14.0
|
| 18 |
+
numpy==2.4.4
|
| 19 |
+
rich==15.0.0
|
| 20 |
+
hf-xet==1.4.3
|
| 21 |
+
scipy==1.17.1
|
| 22 |
+
h5py==3.16.0
|
| 23 |
+
psutil==7.2.2
|
| 24 |
+
ninja==1.13.0
|
| 25 |
+
nvidia-cusparselt-cu12==0.7.1
|
| 26 |
+
certifi==2026.4.22
|
| 27 |
+
nvidia-cuda-nvrtc-cu12==12.8.93
|
| 28 |
+
fsspec==2026.4.0
|
| 29 |
+
tqdm==4.67.3
|
| 30 |
+
charset-normalizer==3.4.7
|
| 31 |
+
openpyxl==3.1.5
|
| 32 |
+
typer==0.25.0
|
| 33 |
+
dynamic_network_architectures==0.4.3
|
| 34 |
+
pandas==3.0.2
|
| 35 |
+
smmap==5.0.3
|
| 36 |
+
torchvision==0.24.1
|
| 37 |
+
pillow==12.2.0
|
| 38 |
+
anyio==4.13.0
|
| 39 |
+
matplotlib==3.10.9
|
| 40 |
+
nvidia-cusolver-cu12==11.7.3.90
|
| 41 |
+
nvidia-cudnn-cu12==9.10.2.21
|
| 42 |
+
scikit-learn==1.8.0
|
| 43 |
+
annotated-doc==0.0.4
|
| 44 |
+
six==1.17.0
|
| 45 |
+
einops==0.8.2
|
| 46 |
+
threadpoolctl==3.6.0
|
| 47 |
+
fonttools==4.62.1
|
| 48 |
+
packaging==26.2
|
| 49 |
+
et_xmlfile==2.0.0
|
| 50 |
+
httpx==0.28.1
|
| 51 |
+
requests==2.33.1
|
| 52 |
+
urllib3==2.6.3
|
| 53 |
+
nvidia-cufile-cu12==1.13.1.3
|
| 54 |
+
python-dateutil==2.9.0.post0
|
| 55 |
+
ptflops==0.7.5
|
| 56 |
+
kiwisolver==1.5.0
|
| 57 |
+
mpmath==1.3.0
|
| 58 |
+
huggingface_hub==1.13.0
|
| 59 |
+
nvidia-nvjitlink-cu12==12.8.93
|
| 60 |
+
annotated-types==0.7.0
|
| 61 |
+
nvidia-curand-cu12==10.3.9.90
|
| 62 |
+
nvidia-nvshmem-cu12==3.3.20
|
| 63 |
+
thop==0.1.1-2209072238
|
| 64 |
+
protobuf==6.33.6
|
| 65 |
+
simpleitk==2.5.4
|
| 66 |
+
nvidia-cuda-cupti-cu12==12.8.90
|
| 67 |
+
Jinja2==3.1.6
|
| 68 |
+
nvidia-cuda-runtime-cu12==12.8.90
|
| 69 |
+
MiMoSe==0.0.2
|
| 70 |
+
setuptools==82.0.1
|
| 71 |
+
joblib==1.5.3
|
| 72 |
+
nodeocc==1.0.26
|
| 73 |
+
mdurl==0.1.2
|
| 74 |
+
typing_extensions==4.15.0
|
| 75 |
+
cycler==0.12.1
|
| 76 |
+
wheel==0.47.0
|
| 77 |
+
PyYAML==6.0.3
|
| 78 |
+
idna==3.13
|
| 79 |
+
triton==3.5.1
|
| 80 |
+
wcwidth==0.6.0
|
| 81 |
+
nvidia-cublas-cu12==12.8.4.1
|
| 82 |
+
typing-inspection==0.4.2
|
| 83 |
+
nvidia-cufft-cu12==11.3.3.83
|
| 84 |
+
gitdb==4.0.12
|
| 85 |
+
nvidia-cusparse-cu12==12.5.8.93
|
| 86 |
+
ttkbootstrap==1.20.2
|
| 87 |
+
pyparsing==3.3.2
|
| 88 |
+
nvidia-nccl-cu12==2.27.5
|
| 89 |
+
networkx==3.6.1
|
| 90 |
+
h11==0.16.0
|
| 91 |
+
sentry-sdk==2.58.0
|
| 92 |
+
nvidia-nvtx-cu12==12.8.90
|
| 93 |
+
markdown-it-py==4.0.0
|
| 94 |
+
prompt_toolkit==3.0.52
|
| 95 |
+
MiMoSe==0.0.2
|
ims2trans23_fold1/wandb/offline-run-20260723_111322-0ov9gtnf/files/wandb-metadata.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
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ims2trans23_fold1/wandb/offline-run-20260723_111322-0ov9gtnf/files/wandb-summary.json
ADDED
|
@@ -0,0 +1 @@
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ims2trans23_fold1/wandb/offline-run-20260723_111322-0ov9gtnf/logs/debug-core.log
ADDED
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@@ -0,0 +1,6 @@
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|
|
|
|
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|
| 1 |
+
{"time":"2026-07-23T11:13:22.986130042+02:00","level":"INFO","msg":"main: starting server","port-filename":"/tmp/tmp99251jez/port-3931415.txt","pid":3931415,"detached":false,"idle-timeout":600000000000,"log-level":0,"disable-analytics":false,"shutdown-on-parent-exit":false,"enable-dcgm-profiling":false}
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| 2 |
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{"time":"2026-07-23T11:13:22.986594987+02:00","level":"INFO","msg":"server: will exit if parent process dies","ppid":3931415}
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| 3 |
+
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| 4 |
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{"time":"2026-07-23T11:13:23.15389758+02:00","level":"INFO","msg":"connection: ManageConnectionData: new connection created","id":"1(@)"}
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| 5 |
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{"time":"2026-07-23T11:13:23.163380024+02:00","level":"INFO","msg":"handleInformInit: received","streamId":"0ov9gtnf","id":"1(@)"}
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| 6 |
+
{"time":"2026-07-23T11:13:23.288623281+02:00","level":"INFO","msg":"handleInformInit: stream started","streamId":"0ov9gtnf","id":"1(@)"}
|
ims2trans23_fold1/wandb/offline-run-20260723_111322-0ov9gtnf/logs/debug-internal.log
ADDED
|
@@ -0,0 +1,11 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{"time":"2026-07-23T11:13:23.164130572+02:00","level":"INFO","msg":"wandb-core"}
|
| 2 |
+
{"time":"2026-07-23T11:13:23.164308742+02:00","level":"INFO","msg":"stream: starting","core version":"0.26.1"}
|
| 3 |
+
{"time":"2026-07-23T11:13:23.287551792+02:00","level":"WARN","msg":"featurechecker: GraphQL client is nil, skipping feature loading"}
|
| 4 |
+
{"time":"2026-07-23T11:13:23.287599499+02:00","level":"WARN","msg":"featurechecker: GraphQL client is nil, skipping feature loading"}
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| 5 |
+
{"time":"2026-07-23T11:13:23.287642962+02:00","level":"INFO","msg":"stream: created new stream","id":"0ov9gtnf"}
|
| 6 |
+
{"time":"2026-07-23T11:13:23.287926543+02:00","level":"INFO","msg":"handler: started"}
|
| 7 |
+
{"time":"2026-07-23T11:13:23.288607366+02:00","level":"INFO","msg":"stream: started"}
|
| 8 |
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{"time":"2026-07-23T11:13:23.288624193+02:00","level":"INFO","msg":"writer: started","stream_id":"0ov9gtnf"}
|
| 9 |
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{"time":"2026-07-23T11:13:23.288695377+02:00","level":"INFO","msg":"sender: started"}
|
| 10 |
+
{"time":"2026-07-23T11:13:23.321105485+02:00","level":"WARN","msg":"featurechecker: GraphQL client is nil, skipping feature loading"}
|
| 11 |
+
{"time":"2026-07-23T11:13:23.321134518+02:00","level":"WARN","msg":"runupserter: server does not expand metric globs but the x_server_side_expand_glob_metrics setting is set; ignoring"}
|
ims2trans23_fold1/wandb/offline-run-20260723_111322-0ov9gtnf/logs/debug.log
ADDED
|
@@ -0,0 +1,19 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
2026-07-23 11:13:22,891 INFO MainThread:3931415 [wandb_setup.py:_flush():81] Current SDK version is 0.26.1
|
| 2 |
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2026-07-23 11:13:22,892 INFO MainThread:3931415 [wandb_setup.py:_flush():81] Configure stats pid to 3931415
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| 3 |
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2026-07-23 11:13:22,892 INFO MainThread:3931415 [wandb_setup.py:_flush():81] Loading settings from environment variables
|
| 4 |
+
2026-07-23 11:13:22,892 INFO MainThread:3931415 [wandb_init.py:setup_run_log_directory():723] Logging user logs to /leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1/wandb/offline-run-20260723_111322-0ov9gtnf/logs/debug.log
|
| 5 |
+
2026-07-23 11:13:22,892 INFO MainThread:3931415 [wandb_init.py:setup_run_log_directory():724] Logging internal logs to /leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1/wandb/offline-run-20260723_111322-0ov9gtnf/logs/debug-internal.log
|
| 6 |
+
2026-07-23 11:13:22,892 INFO MainThread:3931415 [wandb_init.py:init():850] calling init triggers
|
| 7 |
+
2026-07-23 11:13:22,892 INFO MainThread:3931415 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
|
| 8 |
+
config: {'input_dir': '/leonardo_scratch/large/userexternal/ocarpent/mimose/ims2trans-preprocessed', 'output_dir': '/leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1', 'num_epochs': 1000, 'validation_every': 10, 'batch_size': 8, 'num_workers': 8, 'fp16': True, 'compile': False, 'seed': 0, 'custom_trainer_kwargs': {'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 128, 'debug': False, 'transform_kind': 'imfuse', 'train_masking_mode': 'random', 'val_masking_mode': 'validation', 'split_file': '/leonardo/home/userexternal/ocarpent/MiMoSe/src/mimose/data/splits/splits_5fold.json', 'fold': 1}, 'model_class': 'IMS2Trans', 'model_kwargs': {'num_cls': 4}, 'optimizer_class': 'Adam', 'optimizer': {'lr': 0.0016, 'weight_decay': 0.0001, 'betas': (0.9, 0.999), 'momentum': None, 'eps': 1e-08}, 'loss_class': 'IMS2TransLoss', 'loss_kwargs': {'num_classes': None, 'fuse_weight': 1.0, 'prm_weight': 1.0, 'dis_weight': 0.1, 'dis_temperature': 0.5, 'eps': 0.001, 'log_clamp_min': 0.005}, 'scheduler_class': 'PolynomialLR', 'scheduler_kwargs': {'total_iters': 1000, 'power': 0.9}, 'dataset_type': <DatasetType.BRATS23: 'brats23'>, 'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 128, 'debug': False, 'train_masking_mode': <MaskingMode.RANDOM: 'random'>, 'val_masking_mode': <MaskingMode.VALIDATION: 'validation'>, 'split_file': '/leonardo/home/userexternal/ocarpent/MiMoSe/src/mimose/data/splits/splits_5fold.json', '_wandb': {}}
|
| 9 |
+
2026-07-23 11:13:22,892 INFO MainThread:3931415 [wandb_init.py:init():898] starting backend
|
| 10 |
+
2026-07-23 11:13:23,153 INFO MainThread:3931415 [wandb_init.py:init():913] sending inform_init request
|
| 11 |
+
2026-07-23 11:13:23,289 INFO MainThread:3931415 [wandb_init.py:init():918] backend started and connected
|
| 12 |
+
2026-07-23 11:13:23,290 INFO MainThread:3931415 [wandb_init.py:init():988] updated telemetry
|
| 13 |
+
2026-07-23 11:13:23,318 INFO MainThread:3931415 [wandb_init.py:init():1011] communicating run to backend with 90.0 second timeout
|
| 14 |
+
2026-07-23 11:13:23,322 INFO MainThread:3931415 [wandb_init.py:init():1056] starting run threads in backend
|
| 15 |
+
2026-07-23 11:13:23,474 INFO MainThread:3931415 [wandb_run.py:_console_start():2554] atexit reg
|
| 16 |
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2026-07-23 11:13:23,474 INFO MainThread:3931415 [wandb_run.py:_redirect():2403] redirect: wrap_raw
|
| 17 |
+
2026-07-23 11:13:23,474 INFO MainThread:3931415 [wandb_run.py:_redirect():2472] Wrapping output streams.
|
| 18 |
+
2026-07-23 11:13:23,474 INFO MainThread:3931415 [wandb_run.py:_redirect():2495] Redirects installed.
|
| 19 |
+
2026-07-23 11:13:23,478 INFO MainThread:3931415 [wandb_init.py:init():1094] run started, returning control to user process
|
ims2trans23_fold1/wandb/offline-run-20260723_111322-0ov9gtnf/run-0ov9gtnf.wandb
ADDED
|
@@ -0,0 +1,3 @@
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|
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|
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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+
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|
| 3 |
+
size 2195456
|
ims2trans23_fold1/wandb_run_id.txt
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
0ov9gtnf
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