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Upload oryza data

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  1. .gitattributes +13 -0
  2. CSP/CSP_label.txt +350 -0
  3. CSP/OS_CSP_Metadata.csv +351 -0
  4. CSP/Test.txt +0 -0
  5. CSP/Train.txt +3 -0
  6. CSP/Val.txt +0 -0
  7. GEP/GEP_label.txt +405 -0
  8. GEP/OS_GEP_Metadata.tsv +406 -0
  9. GEP/Test.txt +0 -0
  10. GEP/Train.txt +0 -0
  11. GEP/Val.txt +0 -0
  12. GEP/expression_data_TSS.h5 +3 -0
  13. GEP/gene_list.txt +0 -0
  14. fasta/chrom.1.fa +3 -0
  15. fasta/chrom.10.fa +3 -0
  16. fasta/chrom.11.fa +3 -0
  17. fasta/chrom.12.fa +3 -0
  18. fasta/chrom.2.fa +3 -0
  19. fasta/chrom.3.fa +3 -0
  20. fasta/chrom.4.fa +3 -0
  21. fasta/chrom.5.fa +3 -0
  22. fasta/chrom.6.fa +3 -0
  23. fasta/chrom.7.fa +3 -0
  24. fasta/chrom.8.fa +3 -0
  25. fasta/chrom.9.fa +3 -0
  26. for_supp/gs_oryza_sativa.bed +54 -0
  27. for_supp/oryza_masked_regions.bed +0 -0
  28. for_supp/oryza_masked_regions.sorted.bed +0 -0
  29. for_supp/rice_datasets.csv +0 -0
  30. for_supp/test_data.bed +3728 -0
  31. for_supp/train_data.bed +0 -0
  32. for_supp/val_data.bed +3733 -0
.gitattributes CHANGED
@@ -58,3 +58,16 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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  # Video files - compressed
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  *.mp4 filter=lfs diff=lfs merge=lfs -text
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  *.webm filter=lfs diff=lfs merge=lfs -text
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  # Video files - compressed
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  *.mp4 filter=lfs diff=lfs merge=lfs -text
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  *.webm filter=lfs diff=lfs merge=lfs -text
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+ CSP/Train.txt filter=lfs diff=lfs merge=lfs -text
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+ fasta/chrom.1.fa filter=lfs diff=lfs merge=lfs -text
63
+ fasta/chrom.10.fa filter=lfs diff=lfs merge=lfs -text
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+ fasta/chrom.11.fa filter=lfs diff=lfs merge=lfs -text
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+ fasta/chrom.12.fa filter=lfs diff=lfs merge=lfs -text
66
+ fasta/chrom.2.fa filter=lfs diff=lfs merge=lfs -text
67
+ fasta/chrom.3.fa filter=lfs diff=lfs merge=lfs -text
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+ fasta/chrom.4.fa filter=lfs diff=lfs merge=lfs -text
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+ fasta/chrom.5.fa filter=lfs diff=lfs merge=lfs -text
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+ fasta/chrom.6.fa filter=lfs diff=lfs merge=lfs -text
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+ fasta/chrom.7.fa filter=lfs diff=lfs merge=lfs -text
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+ fasta/chrom.8.fa filter=lfs diff=lfs merge=lfs -text
73
+ fasta/chrom.9.fa filter=lfs diff=lfs merge=lfs -text
CSP/CSP_label.txt ADDED
@@ -0,0 +1,350 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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CSP/OS_CSP_Metadata.csv ADDED
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1
+ BioProject ID,Sample accession number,Replicate,Tissue,Tissue specific,Age,Light exposure,Growth_media,Growth_media_specific,Treatment,Treatment_specific,Temperature,Mutant,Mutant_specific,Cultivar,Strain,Factor,Factor_type,Factor_type_specific,Target
2
+ DRP000207,DRX000321,Rep1,Panicle,Young Panicle,21.0,14 hour day,MS,MS,Feeding experiments,"Feeding experiments: BL, DEX added into MS medium",26.0,WT,WT,Japonica,Nipponbare,OSH1,DNA-binding protein,Transcription factor,DRP000207/DRX000321
3
+ DRP001345,DRX013534,Rep1,Whole plant,Whole plant,,,Soil,Soil,No treatment,No treatment,,WT,WT,Japonica,Nipponbare,OsTGAP1,DNA-binding protein,Transcription factor,DRP001345/DRX013534
4
+ DRP001345,DRX013536,Rep1,Whole plant,Whole plant,,,Soil,Soil,No treatment,No treatment,,WT,WT,Japonica,Nipponbare,OsTGAP1,DNA-binding protein,Transcription factor,DRP001345/DRX013536
5
+ DRP007210,DRX167898,Rep1,Root,Root,,,Soil,Soil,No treatment,No treatment,,WT,WT,Japonica,Nipponbare,OsTGAP1,DNA-binding protein,Transcription factor,DRP007210/DRX167898
6
+ DRP007210,DRX167899,Rep1,Root,Root,,,Soil,Soil,No treatment,No treatment,,WT,WT,Japonica,Nipponbare,OsTGAP1,DNA-binding protein,Transcription factor,DRP007210/DRX167899
7
+ DRP007210,DRX167904,Rep1,Shoot,Shoot,,,Soil,Soil,No treatment,No treatment,,WT,WT,Japonica,Nipponbare,OsMYC2,DNA-binding protein,Transcription factor,DRP007210/DRX167904
8
+ DRP007210,DRX167905,Rep1,Shoot,Shoot,,,Soil,Soil,No treatment,No treatment,,WT,WT,Japonica,Nipponbare,OsMYC2,DNA-binding protein,Transcription factor,DRP007210/DRX167905
9
+ SRP297261,DRX195228,Rep1,Endosperm,Endosperm,80.0,,Soil,Soil,No treatment,No treatment,,WT,WT,Japonica,Nipponbare,H3K27me3,histone related,histone methylation,SRP297261/DRX195228
10
+ ERP108685,ERR2575724,Rep1,Leaf,Leaf,14.0,14 hour day,Hydroponics,Hydroponics,"ABA, Cold Stress",Treated with ABA and cold stress respectively.,28.0,WT,,Japonica,Zhongua11,bZIP73,DNA-binding protein,Transcription factor,ERP108685/ERR2575724
11
+ ERP106693,ERX2337661,Rep1,Whole plant,Whole plant,,Half day,Soil,Soil,Salt,Salt,27.0,WT,,Japonica,Nipponbare,OsIDS1,DNA-binding protein,Transcription factor,ERP106693/ERX2337661
12
+ SRP229367,SRR10423448,Rep1,Caryopsis,Caryopsis,81.0,Long day,Soil,Soil,Heat,Natural heat stress,30.0,WT,,Japonica,Zhongua11,ONAC127,DNA-binding protein,Transcription factor,SRP229367/SRR10423448
13
+ SRP229367,SRR10423451,Rep1,Caryopsis,Caryopsis,81.0,Long day,Soil,Soil,Heat,Natural heat stress,30.0,WT,,Japonica,Zhongua11,ONAC129,DNA-binding protein,Transcription factor,SRP229367/SRR10423451
14
+ SRP229367,SRR10423454,Rep1,Caryopsis,Caryopsis,81.0,Long day,Soil,Soil,No treatment,No treatment,30.0,WT,,Japonica,Zhongua11,ONAC127,DNA-binding protein,Transcription factor,SRP229367/SRR10423454
15
+ SRP229367,SRR10423457,Rep1,Caryopsis,Caryopsis,81.0,Long day,Soil,Soil,No treatment,No treatment,30.0,WT,,Japonica,Zhongua11,ONAC129,DNA-binding protein,Transcription factor,SRP229367/SRR10423457
16
+ SRP145259,SRR7142413,Rep1,Whole plant,Whole plant,14.0,,Paddy field,Paddy field,No treatment,No treatment,,WT,,Japonica,Nipponbare,OsGRF4,DNA-binding protein,Transcription factor,SRP145259/SRR7142413
17
+ SRP001787,SRX016122,Rep1,Shoot,Shoot,28.0,Long day,Soil,Soil,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H34me3,histone related,histone methylation,SRP001787/SRX016122
18
+ SRP001787,SRX016123,Rep1,Shoot,Shoot,28.0,Long day,Soil,Soil,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H34me3,histone related,histone methylation,SRP001787/SRX016123
19
+ SRP001787,SRX016124,Rep1,Shoot,Shoot,28.0,Long day,Soil,Soil,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H34me3,histone related,histone methylation,SRP001787/SRX016124
20
+ SRP001787,SRX016125,Rep1,Shoot,Shoot,28.0,Long day,Soil,Soil,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H34me3,histone related,histone methylation,SRP001787/SRX016125
21
+ SRP001787,SRX016126,Rep1,Shoot,Shoot,28.0,Long day,Soil,Soil,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H3K9ac,histone related,histone acetylation,SRP001787/SRX016126
22
+ SRP001787,SRX016127,Rep1,Shoot,Shoot,28.0,Long day,Soil,Soil,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H3K9ac,histone related,histone acetylation,SRP001787/SRX016127
23
+ SRP001787,SRX016128,Rep1,Shoot,Shoot,28.0,Long day,Soil,Soil,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H3K9ac,histone related,histone acetylation,SRP001787/SRX016128
24
+ SRP001787,SRX016129,Rep1,Shoot,Shoot,28.0,Long day,Soil,Soil,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H3K9ac,histone related,histone acetylation,SRP001787/SRX016129
25
+ SRP001787,SRX016130,Rep1,Shoot,Shoot,28.0,Long day,Soil,Soil,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H3K27me3,histone related,histone methylation,SRP001787/SRX016130
26
+ SRP001787,SRX016131,Rep1,Shoot,Shoot,28.0,Long day,Soil,Soil,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H3K27me3,histone related,histone methylation,SRP001787/SRX016131
27
+ SRP001787,SRX016132,Rep1,Shoot,Shoot,28.0,Long day,Soil,Soil,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H3K27me3,histone related,histone methylation,SRP001787/SRX016132
28
+ SRP001787,SRX016133,Rep1,Shoot,Shoot,28.0,Long day,Soil,Soil,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H3K27me3,histone related,histone methylation,SRP001787/SRX016133
29
+ SRP005296,SRX038423,Rep1,Whole plant,Whole plant,14.0,,Soil,Greenhouse,,,28.0,WT,,Japonica,Nipponbare,open chromatin,open chromatin,open chromatin,SRP005296/SRX038423
30
+ SRP005296,SRX038424,Rep1,Callus,Callus,21.0,,Soil,Greenhouse,,,28.0,WT,,Japonica,Nipponbare,open chromatin,open chromatin,open chromatin,SRP005296/SRX038424
31
+ SRP005403,SRX038891,Rep1,Whole plant,Whole plant,14.0,,Soil,Greenhouse,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H3K4me2,histone related,histone methylation,SRP005403/SRX038891
32
+ SRP005403,SRX038892,Rep1,Whole plant,Whole plant,14.0,,Soil,Greenhouse,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H3K4me3,histone related,histone methylation,SRP005403/SRX038892
33
+ SRP005403,SRX038893,Rep1,Whole plant,Whole plant,14.0,,Soil,Greenhouse,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H4K12ac,histone related,histone acetylation,SRP005403/SRX038893
34
+ SRP005607,SRX040548,Rep1,Endosperm,Endosperm,82.0,,Soil,,No treatment,No treatment,,WT,,Japonica,Nipponbare,H3K27me3,histone related,histone methylation,SRP005607/SRX040548
35
+ SRP007423,SRX082182,Rep1,Whole plant,Whole plant,11.0,,Soil,,No treatment,No treatment,,Mutant,Hwayong,Japonica,Hwayong,H3K4me3,histone related,histone methylation,SRP007423/SRX082182
36
+ SRP007423,SRX082183,Rep1,Whole plant,Whole plant,11.0,,Soil,,No treatment,No treatment,,Mutant,CHD1,Japonica,chd1,H3K4me3,histone related,histone methylation,SRP007423/SRX082183
37
+ SRP007423,SRX082184,Rep1,Whole plant,Whole plant,11.0,,Soil,,No treatment,No treatment,,Mutant,Hwayong,Japonica,Hwayong,H3K27me3,histone related,histone methylation,SRP007423/SRX082184
38
+ SRP007423,SRX082185,Rep1,Whole plant,Whole plant,11.0,,Soil,,No treatment,No treatment,,Mutant,CHD1,Japonica,chd1,H3K27me3,histone related,histone methylation,SRP007423/SRX082185
39
+ SRP057432,SRX1001170,Rep1,Leaf,Leaf,28.0,Long day,MS,1/10th MS,No treatment,No treatment,,WT,,Japonica,Japonica,OsABF1,DNA-binding protein,Transcription factor,SRP057432/SRX1001170
40
+ SRP057712,SRX1011367,Rep1,Meristem,Shoot apical meristem,,,Soil,,No treatment,No treatment,,WT,,Japonica,DongJin,H3K4me3,histone related,histone methylation,SRP057712/SRX1011367
41
+ SRP057712,SRX1011368,Rep1,Meristem,Shoot apical meristem,,,Soil,,No treatment,No treatment,,WT,,Japonica,DongJin,H3K27me3,histone related,histone methylation,SRP057712/SRX1011368
42
+ SRP057712,SRX1011369,Rep1,Meristem,Meristem,25.0,,Soil,,No treatment,No treatment,,WT,,Japonica,DongJin,H3K4me3,histone related,histone methylation,SRP057712/SRX1011369
43
+ SRP057712,SRX1011370,Rep1,Meristem,Meristem,25.0,,Soil,,No treatment,No treatment,,WT,,Japonica,DongJin,H3K27me3,histone related,histone methylation,SRP057712/SRX1011370
44
+ SRP057712,SRX1011371,Rep1,Meristem,Meristem,25.0,,Soil,,No treatment,No treatment,,WT,,Japonica,DongJin,H3K4me3,histone related,histone methylation,SRP057712/SRX1011371
45
+ SRP057712,SRX1011372,Rep1,Meristem,Meristem,25.0,,Soil,,No treatment,No treatment,,WT,,Japonica,DongJin,H3K27me3,histone related,histone methylation,SRP057712/SRX1011372
46
+ SRP057712,SRX1011373,Rep1,Meristem,Meristem,25.0,,Soil,,No treatment,No treatment,,WT,,Japonica,DongJin,H3K4me3,histone related,histone methylation,SRP057712/SRX1011373
47
+ SRP057712,SRX1011374,Rep1,Meristem,Meristem,25.0,,Soil,,No treatment,No treatment,,WT,,Japonica,DongJin,H3K27me3,histone related,histone methylation,SRP057712/SRX1011374
48
+ SRP308960,SRX10215317,Rep1,Root,Root tip,,,,,,,,WT,,Japonica,Zhongua11,open chromatin,open chromatin,open chromatin,SRP308960/SRX10215317
49
+ SRP308960,SRX10215319,Rep1,Root,Root tip,,,,,,,,WT,,Japonica,Zhongua11,open chromatin,open chromatin,open chromatin,SRP308960/SRX10215319
50
+ SRP058921,SRX1044779,Rep1,Leaf,Leaf,14.0,Short day,MS,MS,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H3K23ac,histone related,histone acetylation,SRP058921/SRX1044779
51
+ SRP058921,SRX1044780,Rep1,Leaf,Leaf,14.0,Short day,MS,MS,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H4K16ac,histone related,histone acetylation,SRP058921/SRX1044780
52
+ SRP061969,SRX1131812,Rep1,Leaf,Leaf,12.0,,Soil,,No treatment,No treatment,,WT,,Japonica,DongJin,H3K27me3,histone related,histone methylation,SRP061969/SRX1131812
53
+ SRP061969,SRX1131813,Rep1,Leaf,Leaf,12.0,,Soil,,No treatment,No treatment,,WT,,Japonica,DongJin,H3K27me3,histone related,histone methylation,SRP061969/SRX1131813
54
+ SRP061969,SRX1131815,Rep1,Leaf,Leaf,12.0,,Soil,Soil,No treatment,No treatment,,WT,,Japonica,DongJin,SDG711,DNA-binding protein,Methylase,SRP061969/SRX1131815
55
+ SRP062590,SRX1158857,Rep1,Caryopsis,Caryopsis coat,10.0,Half day,Soil,Soil,No treatment,No treatment,28.0,WT,,Japonica,Zhongua11,OsNF-YB1,DNA-binding protein,Transcription factor,SRP062590/SRX1158857
56
+ SRP071339,SRX1620993,Rep1,Whole plant,Whole plant,14.0,,Soil,,No treatment,No treatment,,WT,,Japonica,Nipponbare,H3K9me1,histone related,histone methylation,SRP071339/SRX1620993
57
+ SRP071339,SRX1620994,Rep1,Whole plant,Whole plant,14.0,,Soil,,No treatment,No treatment,,WT,,Japonica,Nipponbare,H3K4ac,histone related,histone acetylation,SRP071339/SRX1620994
58
+ SRP071339,SRX1620995,Rep1,Whole plant,Whole plant,14.0,,Soil,,No treatment,No treatment,,WT,,Japonica,Nipponbare,H3K27me3,histone related,histone methylation,SRP071339/SRX1620995
59
+ SRP071339,SRX1620996,Rep1,Whole plant,Whole plant,14.0,,Soil,,No treatment,No treatment,,WT,,Japonica,Nipponbare,H3K27ac,histone related,histone acetylation,SRP071339/SRX1620996
60
+ SRP071339,SRX1620997,Rep1,Whole plant,Whole plant,14.0,,Soil,,No treatment,No treatment,,WT,,Japonica,Nipponbare,H3K9ac,histone related,histone acetylation,SRP071339/SRX1620997
61
+ SRP071339,SRX1620998,Rep1,Whole plant,Whole plant,14.0,,Soil,,No treatment,No treatment,,WT,,Japonica,Nipponbare,H3K9me3,histone related,histone methylation,SRP071339/SRX1620998
62
+ SRP074236,SRX1738208,Rep1,Root,Root,14.0,,Soil,Soil,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,OsNAC6,DNA-binding protein,Transcription factor,SRP074236/SRX1738208
63
+ SRP074236,SRX1738209,Rep1,Root,Root,14.0,,Soil,Soil,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,OsNAC6,DNA-binding protein,Transcription factor,SRP074236/SRX1738209
64
+ SRP075099,SRX1760740,Rep1,Whole plant,Whole plant,12.0,Long day,MS,MS,No treatment,No treatment,27.0,WT,,Japonica,DongJin,H3K27me3,histone related,histone methylation,SRP075099/SRX1760740
65
+ SRP075099,SRX1760741,Rep1,Whole plant,Whole plant,12.0,Long day,MS,MS,No treatment,No treatment,27.0,WT,,Japonica,Zhongua11,H3K9me2,histone related,histone methylation,SRP075099/SRX1760741
66
+ SRP075204,SRX1763595,Rep1,Whole plant,Whole plant,21.0,Long day,Paddy field,Sand/paddy (1:3) soil,No treatment,No treatment,,WT,WT,Japonica,Zhongua11,OsbZIP23,DNA-binding protein,Transcription factor,SRP075204/SRX1763595
67
+ SRP075204,SRX1763596,Rep1,Whole plant,Whole plant,21.0,Long day,Paddy field,Sand/paddy (1:3) soil,Drought,Drought,,WT,WT,Japonica,Zhongua11,OsbZIP23,DNA-binding protein,Transcription factor,SRP075204/SRX1763596
68
+ SRP075204,SRX1763597,Rep1,Whole plant,Whole plant,21.0,Long day,Paddy field,Sand/paddy (1:3) soil,No treatment,No treatment,,Mutant,OsbZIP23 overexpressed,Japonica,Zhongua11,OsbZIP23,DNA-binding protein,Transcription factor,SRP075204/SRX1763597
69
+ SRP077049,SRX1874293,Rep1,Callus,Callus,30.0,Half day,Soil,Greenhouse,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H2AZ,histone related,histone related,SRP077049/SRX1874293
70
+ SRP077049,SRX1883882,Rep1,Shoot,Shoot,21.0,Half day,Soil,Greenhouse,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H2AZ,histone related,histone related,SRP077049/SRX1883882
71
+ SRP015910,SRX189766,Rep1,Whole plant,Whole plant,7.0,14 hour day,Paddy field,Paddy field and then grown in an incubator,No treatment,No treatment,27.0,WT,WT,Japonica,DongJin,H3K4me3,histone related,histone methylation,SRP015910/SRX189766
72
+ SRP015910,SRX189767,Rep1,Whole plant,Whole plant,7.0,14 hour day,Paddy field,Paddy field and then grown in an incubator,No treatment,No treatment,27.0,Mutant,jmj704,Japonica,DongJin,H3K4me3,histone related,histone methylation,SRP015910/SRX189767
73
+ SRP061969,SRX2004186,Rep1,Leaf,Leaf,12.0,,Soil,,No treatment,No treatment,,WT,,Japonica,DongJin,H3K27me3,histone related,histone methylation,SRP061969/SRX2004186
74
+ SRP061969,SRX2004187,Rep1,Leaf,Leaf,12.0,,Soil,,No treatment,No treatment,,WT,,Japonica,DongJin,H3K27me3,histone related,histone methylation,SRP061969/SRX2004187
75
+ SRP096362,SRX2481522,Rep1,Leaf,Leaf,14.0,,MS,MS,No treatment,No treatment,28.0,WT,,Japonica,Illmi,OsTF1L,DNA-binding protein,Transcription factor,SRP096362/SRX2481522
76
+ SRP096362,SRX2481523,Rep1,Leaf,Leaf,14.0,,MS,MS,No treatment,No treatment,28.0,WT,,Japonica,Illmi,OsTF1L,DNA-binding protein,Transcription factor,SRP096362/SRX2481523
77
+ SRP098855,SRX2538222,Rep1,Whole plant,Whole plant,14.0,,Soil,,No treatment,No treatment,,WT,,Japonica,Nipponbare,H3K4me1,histone related,histone methylation,SRP098855/SRX2538222
78
+ SRP102661,SRX2680215,Rep1,Shoot,Shoot,35.0,Half day,Hydroponics,Hydroponics,Phosphate starvation,Phosphate starvation for 24 hours,,WT,,Japonica,Nipponbare,H2AZ,histone related,histone related,SRP102661/SRX2680215
79
+ SRP102661,SRX2680221,Rep1,Shoot,Shoot,35.0,Half day,Hydroponics,Hydroponics,Phosphate starvation,Phosphate starvation for 24 hours,,WT,,Japonica,Nipponbare,H2AZ,histone related,histone related,SRP102661/SRX2680221
80
+ SRP102661,SRX2680227,Rep1,Shoot,Shoot,35.0,Half day,Hydroponics,Hydroponics,Full nutrient,Full nutrient,,WT,,Japonica,Nipponbare,H2AZ,histone related,histone related,SRP102661/SRX2680227
81
+ SRP102661,SRX2680233,Rep1,Shoot,Shoot,35.0,Half day,Hydroponics,Hydroponics,Full nutrient,Full nutrient,,WT,,Japonica,Nipponbare,H2AZ,histone related,histone related,SRP102661/SRX2680233
82
+ SRP102668,SRX2682071,Rep1,Shoot,Shoot,35.0,Half day,Hydroponics,Hydroponics,Phosphate starvation,Phosphate starvation for 24 hours,30.0,WT,,Japonica,Nipponbare,H3K4me3,histone related,histone methylation,SRP102668/SRX2682071
83
+ SRP102668,SRX2682073,Rep1,Shoot,Shoot,35.0,Half day,Hydroponics,Hydroponics,Full nutrient,Full nutrient,30.0,WT,,Japonica,Nipponbare,H3K4me3,histone related,histone methylation,SRP102668/SRX2682073
84
+ SRP102677,SRX2682756,Rep1,Whole plant,Whole plant,21.0,,Soil,,No treatment,No treatment,,WT,,Japonica,Nipponbare,BSR-D1,DNA-binding protein,Transcription factor,SRP102677/SRX2682756
85
+ SRP049212,SRX2832008,Rep1,Leaf,Leaf,21.0,Long day,Soil,Greenhouse,No treatment,No treatment,30.0,WT,,Japonica,A123,H3K4me3,histone related,histone methylation,SRP049212/SRX2832008
86
+ SRP049212,SRX2832009,Rep1,Leaf,Leaf,21.0,Long day,Soil,Greenhouse,No treatment,No treatment,30.0,WT,,Japonica,A123,H3K9me2,histone related,histone methylation,SRP049212/SRX2832009
87
+ SRP110225,SRX2949337,Rep1,Leaf,Leaf mesophyll,,,Soil,,No treatment,No treatment,,WT,,Japonica,Nipponbare,H3K4me3,histone related,histone methylation,SRP110225/SRX2949337
88
+ SRP111984,SRX3006642,Rep1,Root,Root tip,7.0,Long day,MS,MS,,,28.0,WT,,Japonica,Nipponbare,open chromatin,open chromatin,open chromatin,SRP111984/SRX3006642
89
+ SRP112505,SRX3008390,Rep1,Leaf,Leaf,7.0,Long day,Soil,,No treatment,No treatment,28.0,WT,,Japonica,Zhongua12,OsASR2,DNA-binding protein,Transcription factor,SRP112505/SRX3008390
90
+ SRP115109,SRX3081140,Rep1,Callus,Callus,,Half day,Soil,,No treatment,No treatment,33.0,WT,,Japonica,Nipponbare,H4K12ac,histone related,histone acetylation,SRP115109/SRX3081140
91
+ SRP115109,SRX3081141,Rep1,Panicle,Panicle,,Half day,Soil,,No treatment,No treatment,33.0,WT,,Japonica,Nipponbare,H4K12ac,histone related,histone acetylation,SRP115109/SRX3081141
92
+ SRP115109,SRX3081143,Rep1,Leaf,Leaf,,Half day,Soil,,No treatment,No treatment,33.0,WT,,Japonica,Nipponbare,H3K4me3,histone related,histone methylation,SRP115109/SRX3081143
93
+ SRP115109,SRX3081151,Rep1,Leaf,Leaf,,Half day,Soil,,No treatment,No treatment,33.0,WT,,Japonica,Nipponbare,H3K9me2,histone related,histone methylation,SRP115109/SRX3081151
94
+ SRP125926,SRX3436029,Rep1,Root,Root,14.0,Long day,Soil,,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,OsNAC2,DNA-binding protein,Transcription factor,SRP125926/SRX3436029
95
+ SRP029831,SRX347767,Rep1,Leaf,Leaf,14.0,,Soil,Soil,No treatment,No treatment,,WT,,Japonica,Nipponbare,CenH3,histone related,histone related,SRP029831/SRX347767
96
+ SRP029831,SRX347769,Rep1,Leaf,Leaf,14.0,,Soil,Soil,No treatment,No treatment,,WT,,Japonica,Nipponbare,CenH3,histone related,histone related,SRP029831/SRX347769
97
+ SRP029831,SRX347771,Rep1,Leaf,Leaf,14.0,,Soil,Soil,No treatment,No treatment,,WT,,Japonica,Nipponbare,CenH3,histone related,histone related,SRP029831/SRX347771
98
+ SRP127580,SRX3515252,Rep1,Whole plant,Whole plant,14.0,Half day,Water,Water,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,Kcr,histone related,histone related,SRP127580/SRX3515252
99
+ SRP127580,SRX3515254,Rep1,Whole plant,Whole plant,14.0,Half day,Water,Water,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H3K14cr,histone related,histone related,SRP127580/SRX3515254
100
+ SRP131213,SRX3599178,Rep1,Whole plant,Whole plant,14.0,Half day,Hydroponics,Hydroponics,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H3K4me3,histone related,histone methylation,SRP131213/SRX3599178
101
+ SRP131213,SRX3599179,Rep1,Whole plant,Whole plant,14.0,Half day,Hydroponics,Hydroponics,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H3K36me3,histone related,histone methylation,SRP131213/SRX3599179
102
+ SRP131213,SRX3599180,Rep1,Whole plant,Whole plant,14.0,Half day,Hydroponics,Hydroponics,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H3K27ac,histone related,histone acetylation,SRP131213/SRX3599180
103
+ SRP131213,SRX3599181,Rep1,Whole plant,Whole plant,14.0,Half day,Hydroponics,Hydroponics,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H3K9ac,histone related,histone acetylation,SRP131213/SRX3599181
104
+ SRP131213,SRX3599182,Rep1,Whole plant,Whole plant,14.0,Half day,Hydroponics,Hydroponics,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H4K12ac,histone related,histone acetylation,SRP131213/SRX3599182
105
+ SRP131213,SRX3599183,Rep1,Whole plant,Whole plant,14.0,Half day,Hydroponics,Hydroponics,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H3K27me3,histone related,histone methylation,SRP131213/SRX3599183
106
+ SRP131213,SRX3599184,Rep1,Whole plant,Whole plant,14.0,Half day,Hydroponics,Hydroponics,Salt,Salt,28.0,WT,,Japonica,Nipponbare,H3K4me3,histone related,histone methylation,SRP131213/SRX3599184
107
+ SRP131213,SRX3599185,Rep1,Whole plant,Whole plant,14.0,Half day,Hydroponics,Hydroponics,Salt,Salt,28.0,WT,,Japonica,Nipponbare,H3K36me3,histone related,histone methylation,SRP131213/SRX3599185
108
+ SRP131213,SRX3599186,Rep1,Whole plant,Whole plant,14.0,Half day,Hydroponics,Hydroponics,Salt,Salt,28.0,WT,,Japonica,Nipponbare,H3K27ac,histone related,histone acetylation,SRP131213/SRX3599186
109
+ SRP131213,SRX3599187,Rep1,Whole plant,Whole plant,14.0,Half day,Hydroponics,Hydroponics,Salt,Salt,28.0,WT,,Japonica,Nipponbare,H3K9ac,histone related,histone acetylation,SRP131213/SRX3599187
110
+ SRP131213,SRX3599189,Rep1,Whole plant,Whole plant,14.0,Half day,Hydroponics,Hydroponics,Salt,Salt,28.0,WT,,Japonica,Nipponbare,H3K27me3,histone related,histone methylation,SRP131213/SRX3599189
111
+ SRP131213,SRX3599190,Rep1,Shoot,Shoot,14.0,Half day,Hydroponics,Hydroponics,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H3K4me3,histone related,histone methylation,SRP131213/SRX3599190
112
+ SRP131213,SRX3599191,Rep1,Shoot,Shoot,14.0,Half day,Hydroponics,Hydroponics,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H3K36me3,histone related,histone methylation,SRP131213/SRX3599191
113
+ SRP131213,SRX3599192,Rep1,Shoot,Shoot,14.0,Half day,Hydroponics,Hydroponics,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H3K27ac,histone related,histone acetylation,SRP131213/SRX3599192
114
+ SRP131213,SRX3599193,Rep1,Shoot,Shoot,14.0,Half day,Hydroponics,Hydroponics,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H3K9ac,histone related,histone acetylation,SRP131213/SRX3599193
115
+ SRP131213,SRX3599194,Rep1,Shoot,Shoot,14.0,Half day,Hydroponics,Hydroponics,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H4K12ac,histone related,histone acetylation,SRP131213/SRX3599194
116
+ SRP131213,SRX3599195,Rep1,Shoot,Shoot,14.0,Half day,Hydroponics,Hydroponics,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,H3K27me3,histone related,histone methylation,SRP131213/SRX3599195
117
+ SRP131213,SRX3599196,Rep1,Shoot,Shoot,14.0,Half day,Hydroponics,Hydroponics,Salt,Salt,28.0,WT,,Japonica,Nipponbare,H3K4me3,histone related,histone methylation,SRP131213/SRX3599196
118
+ SRP131213,SRX3599197,Rep1,Shoot,Shoot,14.0,Half day,Hydroponics,Hydroponics,Salt,Salt,28.0,WT,,Japonica,Nipponbare,H3K36me3,histone related,histone methylation,SRP131213/SRX3599197
119
+ SRP131213,SRX3599198,Rep1,Shoot,Shoot,14.0,Half day,Hydroponics,Hydroponics,Salt,Salt,28.0,WT,,Japonica,Nipponbare,H3K27ac,histone related,histone acetylation,SRP131213/SRX3599198
120
+ SRP131213,SRX3599199,Rep1,Shoot,Shoot,14.0,Half day,Hydroponics,Hydroponics,Salt,Salt,28.0,WT,,Japonica,Nipponbare,H3K9ac,histone related,histone acetylation,SRP131213/SRX3599199
121
+ SRP131213,SRX3599200,Rep1,Shoot,Shoot,14.0,Half day,Hydroponics,Hydroponics,Salt,Salt,28.0,WT,,Japonica,Nipponbare,H4K12ac,histone related,histone acetylation,SRP131213/SRX3599200
122
+ SRP131213,SRX3599201,Rep1,Shoot,Shoot,14.0,Half day,Hydroponics,Hydroponics,Salt,Salt,28.0,WT,,Japonica,Nipponbare,H3K27me3,histone related,histone methylation,SRP131213/SRX3599201
123
+ SRP133423,SRX3741414,Rep1,Root,Root,42.0,Long day,Soil,Soil,No treatment,No treatment,26.0,WT,,Japonica,Nipponbare,H3K27me3,histone related,histone methylation,SRP133423/SRX3741414
124
+ SRP133423,SRX3741422,Rep1,Root,Root,42.0,Long day,Soil,Soil,No treatment,No treatment,26.0,WT,,Japonica,Nipponbare,H3K4me3,histone related,histone methylation,SRP133423/SRX3741422
125
+ SRP133423,SRX3741426,Rep1,Leaf,Leaf,42.0,Long day,Soil,Soil,No treatment,No treatment,26.0,WT,,Japonica,Nipponbare,H3K4me3,histone related,histone methylation,SRP133423/SRX3741426
126
+ SRP110225,SRX3752927,Rep1,Leaf,Leaf mesophyll,,,Soil,,No treatment,No treatment,,WT,,Japonica,Nipponbare,H3K27me3,histone related,histone methylation,SRP110225/SRX3752927
127
+ SRP133766,SRX3754667,Rep1,Leaf,Leaf,12.0,,MS,MS,Dark,Continous Dark 48 hours,30.0,WT,,Japonica,DongJin,H3K9ac,histone related,histone acetylation,SRP133766/SRX3754667
128
+ SRP133766,SRX3754669,Rep1,Leaf,Leaf,12.0,,MS,MS,Dark,Continous Dark 48 hours,30.0,WT,,Japonica,DongJin,Kbu,histone related,histone related,SRP133766/SRX3754669
129
+ SRP133766,SRX3754671,Rep1,Leaf,Leaf,12.0,,MS,MS,Dark,Continous Dark 48 hours,30.0,WT,,Japonica,DongJin,Kcr,histone related,histone related,SRP133766/SRX3754671
130
+ SRP133766,SRX3754673,Rep1,Leaf,Leaf,12.0,,MS,MS,Submergence,Submergence 6 hours,30.0,WT,,Japonica,DongJin,H3K9ac,histone related,histone acetylation,SRP133766/SRX3754673
131
+ SRP133766,SRX3754675,Rep1,Leaf,Leaf,12.0,,MS,MS,Submergence,Submergence 6 hours,30.0,WT,,Japonica,DongJin,Kbu,histone related,histone related,SRP133766/SRX3754675
132
+ SRP133766,SRX3754677,Rep1,Leaf,Leaf,12.0,,MS,MS,Submergence,Submergence 6 hours,30.0,WT,,Japonica,DongJin,Kcr,histone related,histone related,SRP133766/SRX3754677
133
+ SRP133766,SRX3754693,Rep1,Leaf,Leaf,30.0,,MS,MS,No treatment,No treatment,30.0,WT,,Japonica,DongJin,H3K9ac,histone related,histone acetylation,SRP133766/SRX3754693
134
+ SRP133766,SRX3754695,Rep1,Leaf,Leaf,30.0,,MS,MS,No treatment,No treatment,30.0,WT,,Japonica,DongJin,H3K9ac,histone related,histone acetylation,SRP133766/SRX3754695
135
+ SRP133766,SRX3754697,Rep1,Leaf,Leaf,30.0,,MS,MS,No treatment,No treatment,30.0,WT,,Japonica,DongJin,H3K9ac,histone related,histone acetylation,SRP133766/SRX3754697
136
+ SRP133766,SRX3754699,Rep1,Leaf,Leaf,30.0,,MS,MS,No treatment,No treatment,30.0,WT,,Japonica,DongJin,H3K9ac,histone related,histone acetylation,SRP133766/SRX3754699
137
+ SRP135631,SRX3787608,Rep1,Whole plant,Whole plant,14.0,,Soil,,No treatment,No treatment,,WT,,Japonica,Japonica,NGR2,DNA-binding protein,Transcription factor,SRP135631/SRX3787608
138
+ SRP136689,SRX3861939,Rep1,Shoot,Shoot,14.0,Long day,Hydroponics,Hydroponics,No treatment,No treatment,30.0,WT,,Japonica,Japonica,H3K36me2,histone related,histone methylation,SRP136689/SRX3861939
139
+ SRP136689,SRX3861940,Rep1,Shoot,Shoot,14.0,Long day,Hydroponics,Hydroponics,No treatment,No treatment,30.0,WT,,Japonica,Japonica,H3K36me3,histone related,histone methylation,SRP136689/SRX3861940
140
+ SRP136689,SRX3861942,Rep1,Shoot,Shoot,14.0,Long day,Hydroponics,Hydroponics,No treatment,No treatment,30.0,WT,,Japonica,Japonica,H3K36me1,histone related,histone methylation,SRP136689/SRX3861942
141
+ SRP126351,SRX3898843,Rep1,Panicle,Young Panicle,,Long day,Soil,,No treatment,No treatment,,WT,,Japonica,Japonica,H3K27ac,histone related,histone acetylation,SRP126351/SRX3898843
142
+ SRP126351,SRX3898845,Rep1,Panicle,Young Panicle,,Long day,Soil,,No treatment,No treatment,,WT,,Japonica,Japonica,H3K27me3,histone related,histone methylation,SRP126351/SRX3898845
143
+ SRP126351,SRX3898848,Rep1,Panicle,Young Panicle,,Long day,Soil,,No treatment,No treatment,,WT,,Japonica,Japonica,H3K36me3,histone related,histone methylation,SRP126351/SRX3898848
144
+ SRP126351,SRX3898849,Rep1,Panicle,Young Panicle,,Long day,Soil,,No treatment,No treatment,,WT,,Japonica,Japonica,H3K4me1,histone related,histone methylation,SRP126351/SRX3898849
145
+ SRP126351,SRX3898851,Rep1,Panicle,Young Panicle,,Long day,Soil,,No treatment,No treatment,,WT,,Japonica,Japonica,H3K4me3,histone related,histone methylation,SRP126351/SRX3898851
146
+ SRP141123,SRX3971167,Rep1,Leaf,Leaf,14.0,Long day,Hydroponics,Hydroponics,No treatment,No treatment,28.0,WT,,Japonica,Zhongua11,bZIP73,DNA-binding protein,Transcription factor,SRP141123/SRX3971167
147
+ SRP153241,SRX4386791,Rep1,Whole plant,Whole plant,,Half day,Soil,,No treatment,No treatment,27.0,WT,WT,Japonica,Zhongua11,H2Bub1,histone related,histone related,SRP153241/SRX4386791
148
+ SRP153241,SRX4386794,Rep1,Whole plant,Whole plant,,Half day,Soil,,Drought,Moderate drought,27.0,WT,WT,Japonica,Zhongua11,H2Bub1,histone related,histone related,SRP153241/SRX4386794
149
+ SRP153241,SRX4386797,Rep1,Whole plant,Whole plant,,Half day,Soil,,Drought,Severe drought,27.0,WT,WT,Japonica,Zhongua11,H2Bub1,histone related,histone related,SRP153241/SRX4386797
150
+ SRP156906,SRX4524770,Rep1,Leaf,Leaf,14.0,,Soil,,blast isolate TH12,blast isolate TH13,,WT,,Japonica,Nipponbare,PIBP1,DNA-binding protein,Transcription factor,SRP156906/SRX4524770
151
+ SRP158087,SRX4558961,Rep1,Endosperm,Endosperm,,,Soil,,No treatment,No treatment,,WT,,Japonica,Nipponbare,H3K4me3,histone related,histone methylation,SRP158087/SRX4558961
152
+ SRP159838,SRX4647158,Rep1,Endosperm,Endosperm,72.0,,Soil,,No treatment,No treatment,,WT,,Japonica,Zhongua11,OsNF-YC12,DNA-binding protein,Transcription factor,SRP159838/SRX4647158
153
+ SRP153241,SRX4998108,Rep1,Leaf,Leaf,,Half day,Soil,,Drought,Drought,27.0,WT,WT,Japonica,Zhongua12,H2Bub1,histone related,histone related,SRP153241/SRX4998108
154
+ SRP153241,SRX4998114,Rep1,Leaf,Leaf,,Half day,Soil,,No treatment,No treatment,27.0,WT,WT,Japonica,Zhongua12,H2Bub1,histone related,histone related,SRP153241/SRX4998114
155
+ SRP153241,SRX4998120,Rep1,Leaf,Leaf,,Half day,Soil,,Drought,Drought,27.0,Mutant,obzip46 mutant,Japonica,Zhongua12,H2Bub1,histone related,histone related,SRP153241/SRX4998120
156
+ SRP153241,SRX4998126,Rep1,Leaf,Leaf,,Half day,Soil,,No treatment,No treatment,27.0,Mutant,obzip46 mutant,Japonica,Zhongua12,H2Bub1,histone related,histone related,SRP153241/SRX4998126
157
+ SRP174063,SRX5171003,Rep1,Leaf,Leaf,28.0,Long day,Soil,Soil,No treatment,No treatment,,WT,,Japonica,Zhongua12,OsbZIP81,DNA-binding protein,Transcription factor,SRP174063/SRX5171003
158
+ SRP188481,SRX5524718,Rep1,Whole plant,Whole plant,14.0,Half day,Water,Water,No treatment,No treatment,28.0,WT,,Japonica,Nipponbare,Kbu,histone related,histone related,SRP188481/SRX5524718
159
+ SRP188762,SRX5538657,Rep1,Whole plant,Whole plant,15.0,,MS,MS,No treatment,No treatment,28.0,WT,,Japonica,SNAC1-0E,SNAC1,DNA-binding protein,Transcription factor,SRP188762/SRX5538657
160
+ SRP188762,SRX5538663,Rep1,Whole plant,Whole plant,15.0,,MS,MS,No treatment,No treatment,28.0,WT,WT,Japonica,Zhongua11,SNAC1,DNA-binding protein,Transcription factor,SRP188762/SRX5538663
161
+ SRP201150,SRX6046228,Rep1,Leaf,Leaf,,Long day,MS,MS,No treatment,No treatment,30.0,WT,,Japonica,Japonica,H3K4me3,histone related,histone methylation,SRP201150/SRX6046228
162
+ SRP201150,SRX6046230,Rep1,Leaf,Leaf,,Long day,MS,MS,No treatment,No treatment,30.0,WT,,Japonica,Japonica,H3K27me3,histone related,histone methylation,SRP201150/SRX6046230
163
+ SRP201150,SRX6046231,Rep1,Leaf,Leaf,,Long day,MS,MS,No treatment,No treatment,30.0,WT,,Japonica,Japonica,H2AZ,histone related,histone related,SRP201150/SRX6046231
164
+ SRP201150,SRX6046233,Rep1,Leaf,Leaf,,Long day,MS,MS,No treatment,No treatment,30.0,WT,,Japonica,Japonica,H2AZ,histone related,histone related,SRP201150/SRX6046233
165
+ SRP201150,SRX6046234,Rep1,Leaf,Leaf,,Long day,MS,MS,No treatment,No treatment,30.0,WT,,Japonica,Japonica,H2AZ,histone related,histone related,SRP201150/SRX6046234
166
+ SRP201150,SRX6046236,Rep1,Leaf,Leaf,,Long day,MS,MS,No treatment,No treatment,30.0,WT,,Japonica,Japonica,H3K27me3,histone related,histone methylation,SRP201150/SRX6046236
167
+ SRP201150,SRX6046237,Rep1,Leaf,Leaf,,Long day,MS,MS,No treatment,No treatment,30.0,WT,,Japonica,Japonica,H3K4me3,histone related,histone methylation,SRP201150/SRX6046237
168
+ SRP201150,SRX6046238,Rep1,Leaf,Leaf,,Long day,MS,MS,No treatment,No treatment,30.0,WT,,Japonica,Japonica,H3K27me3,histone related,histone methylation,SRP201150/SRX6046238
169
+ SRP219719,SRX6773605,Rep1,Whole plant,Whole plant,14.0,Half day,Hydroponics,Hydroponics,No treatment,No treatment,30.0,WT,,Japonica,Azucena,H2AZ,histone related,histone related,SRP219719/SRX6773605
170
+ SRP227871,SRX7082153,Rep1,Leaf,Leaf,17.0,,Hydroponics,Hydroponics,No treatment,No treatment,,WT,,Japonica,Azucena,H3K27me3,histone related,histone methylation,SRP227871/SRX7082153
171
+ SRP227871,SRX7082156,Rep1,Leaf,Leaf,17.0,,Hydroponics,Hydroponics,No treatment,No treatment,,WT,,Japonica,Azucena,H3K27ac,histone related,histone acetylation,SRP227871/SRX7082156
172
+ SRP227871,SRX7082157,Rep1,Leaf,Leaf,17.0,,Hydroponics,Hydroponics,No treatment,No treatment,,WT,,Japonica,Azucena,H3K18ac,histone related,histone acetylation,SRP227871/SRX7082157
173
+ SRP227871,SRX7082158,Rep1,Leaf,Leaf,17.0,,Hydroponics,Hydroponics,No treatment,No treatment,,WT,,Japonica,Azucena,H3K4me3,histone related,histone methylation,SRP227871/SRX7082158
174
+ SRP049100,SRX737109,Rep1,Panicle,Panicle,,,Soil,,No treatment,No treatment,,WT,WT,Japonica,Nipponbare,H3K27me3,histone related,histone methylation,SRP049100/SRX737109
175
+ SRP238435,SRX7426330,Rep1,Leaf,Young leaf,14.0,Long day,Hydroponics,Hydroponics,No treatment,No treatment,32.0,WT,,Japonica,MH63,H3K4me3,histone related,histone methylation,SRP238435/SRX7426330
176
+ SRP238435,SRX7426347,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,ZhenShan97,H3K4me3,histone related,histone methylation,SRP238435/SRX7426347
177
+ SRP238435,SRX7426353,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,HGK 98,H3K4me3,histone related,histone methylation,SRP238435/SRX7426353
178
+ SRP238435,SRX7426355,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,HGK 98,H3K27ac,histone related,histone acetylation,SRP238435/SRX7426355
179
+ SRP238435,SRX7426357,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,HGK 98,H3K27me3,histone related,histone methylation,SRP238435/SRX7426357
180
+ SRP238435,SRX7426359,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,HGK 98,H3K4me1,histone related,histone methylation,SRP238435/SRX7426359
181
+ SRP238435,SRX7426361,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,HGK 98,H3K9me2,histone related,histone methylation,SRP238435/SRX7426361
182
+ SRP238435,SRX7426363,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,HGK 98,Pol II,DNA-binding protein,RNA polymerase,SRP238435/SRX7426363
183
+ SRP238435,SRX7426365,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Garia,H3K4me3,histone related,histone methylation,SRP238435/SRX7426365
184
+ SRP238435,SRX7426367,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Garia,H3K27ac,histone related,histone acetylation,SRP238435/SRX7426367
185
+ SRP238435,SRX7426369,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Garia,H3K27me3,histone related,histone methylation,SRP238435/SRX7426369
186
+ SRP238435,SRX7426371,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Garia,H3K4me1,histone related,histone methylation,SRP238435/SRX7426371
187
+ SRP238435,SRX7426373,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Garia,H3K9me2,histone related,histone methylation,SRP238435/SRX7426373
188
+ SRP238435,SRX7426375,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Garia,Pol II,DNA-binding protein,RNA polymerase,SRP238435/SRX7426375
189
+ SRP238435,SRX7426377,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Aijiaonante,H3K4me3,histone related,histone methylation,SRP238435/SRX7426377
190
+ SRP238435,SRX7426379,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Aijiaonante,H3K27ac,histone related,histone acetylation,SRP238435/SRX7426379
191
+ SRP238435,SRX7426381,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Aijiaonante,H3K27me3,histone related,histone methylation,SRP238435/SRX7426381
192
+ SRP238435,SRX7426383,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Aijiaonante,H3K4me1,histone related,histone methylation,SRP238435/SRX7426383
193
+ SRP238435,SRX7426385,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Aijiaonante,H3K9me2,histone related,histone methylation,SRP238435/SRX7426385
194
+ SRP238435,SRX7426387,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Aijiaonante,Pol II,DNA-binding protein,RNA polymerase,SRP238435/SRX7426387
195
+ SRP238435,SRX7426389,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Xibaizhan,H3K4me3,histone related,histone methylation,SRP238435/SRX7426389
196
+ SRP238435,SRX7426391,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Xibaizhan,H3K27ac,histone related,histone acetylation,SRP238435/SRX7426391
197
+ SRP238435,SRX7426393,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Xibaizhan,H3K27me3,histone related,histone methylation,SRP238435/SRX7426393
198
+ SRP238435,SRX7426395,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Xibaizhan,H3K4me1,histone related,histone methylation,SRP238435/SRX7426395
199
+ SRP238435,SRX7426397,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Xibaizhan,H3K9me2,histone related,histone methylation,SRP238435/SRX7426397
200
+ SRP238435,SRX7426399,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Xibaizhan,Pol II,DNA-binding protein,RNA polymerase,SRP238435/SRX7426399
201
+ SRP238435,SRX7426401,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,WH139,H3K4me3,histone related,histone methylation,SRP238435/SRX7426401
202
+ SRP238435,SRX7426403,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,WH139,H3K27ac,histone related,histone acetylation,SRP238435/SRX7426403
203
+ SRP238435,SRX7426405,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,WH139,H3K27me3,histone related,histone methylation,SRP238435/SRX7426405
204
+ SRP238435,SRX7426407,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,WH139,H3K4me1,histone related,histone methylation,SRP238435/SRX7426407
205
+ SRP238435,SRX7426409,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,WH139,H3K9me2,histone related,histone methylation,SRP238435/SRX7426409
206
+ SRP238435,SRX7426411,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,WH139,Pol II,DNA-binding protein,RNA polymerase,SRP238435/SRX7426411
207
+ SRP238435,SRX7426413,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Nanjing11,H3K4me3,histone related,histone methylation,SRP238435/SRX7426413
208
+ SRP238435,SRX7426415,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Nanjing11,H3K27ac,histone related,histone acetylation,SRP238435/SRX7426415
209
+ SRP238435,SRX7426417,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Nanjing11,H3K27me3,histone related,histone methylation,SRP238435/SRX7426417
210
+ SRP238435,SRX7426419,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Nanjing11,H3K4me1,histone related,histone methylation,SRP238435/SRX7426419
211
+ SRP238435,SRX7426421,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Nanjing11,H3K9me2,histone related,histone methylation,SRP238435/SRX7426421
212
+ SRP238435,SRX7426423,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Nanjing11,Pol II,DNA-binding protein,RNA polymerase,SRP238435/SRX7426423
213
+ SRP238435,SRX7426425,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,9311,H3K4me3,histone related,histone methylation,SRP238435/SRX7426425
214
+ SRP238435,SRX7426427,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,9311,H3K27ac,histone related,histone acetylation,SRP238435/SRX7426427
215
+ SRP238435,SRX7426429,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,9311,H3K27me3,histone related,histone methylation,SRP238435/SRX7426429
216
+ SRP238435,SRX7426431,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,9311,H3K4me1,histone related,histone methylation,SRP238435/SRX7426431
217
+ SRP238435,SRX7426433,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,9311,H3K9me2,histone related,histone methylation,SRP238435/SRX7426433
218
+ SRP238435,SRX7426435,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,9311,Pol II,DNA-binding protein,RNA polymerase,SRP238435/SRX7426435
219
+ SRP238435,SRX7426437,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Y134,H3K4me3,histone related,histone methylation,SRP238435/SRX7426437
220
+ SRP238435,SRX7426439,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Y134,H3K27ac,histone related,histone acetylation,SRP238435/SRX7426439
221
+ SRP238435,SRX7426441,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Y134,H3K27me3,histone related,histone methylation,SRP238435/SRX7426441
222
+ SRP238435,SRX7426443,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Y134,H3K4me1,histone related,histone methylation,SRP238435/SRX7426443
223
+ SRP238435,SRX7426445,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Y134,H3K9me2,histone related,histone methylation,SRP238435/SRX7426445
224
+ SRP238435,SRX7426447,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Y134,Pol II,DNA-binding protein,RNA polymerase,SRP238435/SRX7426447
225
+ SRP238435,SRX7426449,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,IR72,H3K4me3,histone related,histone methylation,SRP238435/SRX7426449
226
+ SRP238435,SRX7426451,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,IR72,H3K27ac,histone related,histone acetylation,SRP238435/SRX7426451
227
+ SRP238435,SRX7426453,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,IR72,H3K27me3,histone related,histone methylation,SRP238435/SRX7426453
228
+ SRP238435,SRX7426455,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,IR72,H3K4me1,histone related,histone methylation,SRP238435/SRX7426455
229
+ SRP238435,SRX7426457,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,IR72,H3K9me2,histone related,histone methylation,SRP238435/SRX7426457
230
+ SRP238435,SRX7426459,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,IR72,Pol II,DNA-binding protein,RNA polymerase,SRP238435/SRX7426459
231
+ SRP238435,SRX7426461,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,PeiC122,H3K4me3,histone related,histone methylation,SRP238435/SRX7426461
232
+ SRP238435,SRX7426463,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,PeiC122,H3K27ac,histone related,histone acetylation,SRP238435/SRX7426463
233
+ SRP238435,SRX7426465,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,PeiC122,H3K27me3,histone related,histone methylation,SRP238435/SRX7426465
234
+ SRP238435,SRX7426467,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,PeiC122,H3K4me1,histone related,histone methylation,SRP238435/SRX7426467
235
+ SRP238435,SRX7426469,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,PeiC122,H3K9me2,histone related,histone methylation,SRP238435/SRX7426469
236
+ SRP238435,SRX7426471,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,PeiC122,Pol II,DNA-binding protein,RNA polymerase,SRP238435/SRX7426471
237
+ SRP238435,SRX7426473,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Yong Chal Byo,H3K4me3,histone related,histone methylation,SRP238435/SRX7426473
238
+ SRP238435,SRX7426475,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Yong Chal Byo,H3K27ac,histone related,histone acetylation,SRP238435/SRX7426475
239
+ SRP238435,SRX7426477,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Yong Chal Byo,H3K27me3,histone related,histone methylation,SRP238435/SRX7426477
240
+ SRP238435,SRX7426479,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Yong Chal Byo,H3K4me1,histone related,histone methylation,SRP238435/SRX7426479
241
+ SRP238435,SRX7426481,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Yong Chal Byo,H3K9me2,histone related,histone methylation,SRP238435/SRX7426481
242
+ SRP238435,SRX7426483,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Yong Chal Byo,Pol II,DNA-binding protein,RNA polymerase,SRP238435/SRX7426483
243
+ SRP238435,SRX7426485,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,TAINO 38,H3K4me3,histone related,histone methylation,SRP238435/SRX7426485
244
+ SRP238435,SRX7426487,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,TAINO 38,H3K27ac,histone related,histone acetylation,SRP238435/SRX7426487
245
+ SRP238435,SRX7426489,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,TAINO 38,H3K27me3,histone related,histone methylation,SRP238435/SRX7426489
246
+ SRP238435,SRX7426491,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,TAINO 38,H3K4me1,histone related,histone methylation,SRP238435/SRX7426491
247
+ SRP238435,SRX7426493,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,TAINO 38,H3K9me2,histone related,histone methylation,SRP238435/SRX7426493
248
+ SRP238435,SRX7426495,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,TAINO 38,Pol II,DNA-binding protein,RNA polymerase,SRP238435/SRX7426495
249
+ SRP238435,SRX7426497,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Ginga,H3K4me3,histone related,histone methylation,SRP238435/SRX7426497
250
+ SRP238435,SRX7426499,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Ginga,H3K27ac,histone related,histone acetylation,SRP238435/SRX7426499
251
+ SRP238435,SRX7426501,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Ginga,H3K27me3,histone related,histone methylation,SRP238435/SRX7426501
252
+ SRP238435,SRX7426503,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Ginga,H3K4me1,histone related,histone methylation,SRP238435/SRX7426503
253
+ SRP238435,SRX7426505,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Ginga,H3K9me2,histone related,histone methylation,SRP238435/SRX7426505
254
+ SRP238435,SRX7426507,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Ginga,Pol II,DNA-binding protein,RNA polymerase,SRP238435/SRX7426507
255
+ SRP238435,SRX7426509,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Labelle,H3K4me3,histone related,histone methylation,SRP238435/SRX7426509
256
+ SRP238435,SRX7426511,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Labelle,H3K27ac,histone related,histone acetylation,SRP238435/SRX7426511
257
+ SRP238435,SRX7426513,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Labelle,H3K27me3,histone related,histone methylation,SRP238435/SRX7426513
258
+ SRP238435,SRX7426515,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Labelle,H3K4me1,histone related,histone methylation,SRP238435/SRX7426515
259
+ SRP238435,SRX7426517,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Labelle,H3K9me2,histone related,histone methylation,SRP238435/SRX7426517
260
+ SRP238435,SRX7426519,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Labelle,Pol II,DNA-binding protein,RNA polymerase,SRP238435/SRX7426519
261
+ SRP238435,SRX7426521,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Latisai1,H3K4me3,histone related,histone methylation,SRP238435/SRX7426521
262
+ SRP238435,SRX7426523,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Latisai1,H3K27ac,histone related,histone acetylation,SRP238435/SRX7426523
263
+ SRP238435,SRX7426525,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Latisai1,H3K27me3,histone related,histone methylation,SRP238435/SRX7426525
264
+ SRP238435,SRX7426527,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Latisai1,H3K4me1,histone related,histone methylation,SRP238435/SRX7426527
265
+ SRP238435,SRX7426529,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Latisai1,H3K9me2,histone related,histone methylation,SRP238435/SRX7426529
266
+ SRP238435,SRX7426531,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Latisai1,Pol II,DNA-binding protein,RNA polymerase,SRP238435/SRX7426531
267
+ SRP238435,SRX7426533,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Gasym Hany,H3K4me3,histone related,histone methylation,SRP238435/SRX7426533
268
+ SRP238435,SRX7426535,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Gasym Hany,H3K27ac,histone related,histone acetylation,SRP238435/SRX7426535
269
+ SRP238435,SRX7426537,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Gasym Hany,H3K27me3,histone related,histone methylation,SRP238435/SRX7426537
270
+ SRP238435,SRX7426539,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Gasym Hany,H3K4me1,histone related,histone methylation,SRP238435/SRX7426539
271
+ SRP238435,SRX7426541,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Gasym Hany,H3K9me2,histone related,histone methylation,SRP238435/SRX7426541
272
+ SRP238435,SRX7426543,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Gasym Hany,Pol II,DNA-binding protein,RNA polymerase,SRP238435/SRX7426543
273
+ SRP238435,SRX7426545,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,BASMATI 385,H3K4me3,histone related,histone methylation,SRP238435/SRX7426545
274
+ SRP238435,SRX7426547,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,BASMATI 385,H3K27ac,histone related,histone acetylation,SRP238435/SRX7426547
275
+ SRP238435,SRX7426549,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,BASMATI 385,H3K27me3,histone related,histone methylation,SRP238435/SRX7426549
276
+ SRP238435,SRX7426551,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,BASMATI 385,H3K4me1,histone related,histone methylation,SRP238435/SRX7426551
277
+ SRP238435,SRX7426553,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,BASMATI 385,H3K9me2,histone related,histone methylation,SRP238435/SRX7426553
278
+ SRP238435,SRX7426555,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,BASMATI 385,Pol II,DNA-binding protein,RNA polymerase,SRP238435/SRX7426555
279
+ SRP238435,SRX7426569,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Minghui 63,H3K27me3,histone related,histone methylation,SRP238435/SRX7426569
280
+ SRP238435,SRX7426571,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Minghui 63,H3K4me1,histone related,histone methylation,SRP238435/SRX7426571
281
+ SRP238435,SRX7426573,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Minghui 63,H3K9me2,histone related,histone methylation,SRP238435/SRX7426573
282
+ SRP238435,SRX7426581,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Minghui 63,H3K4me1,histone related,histone methylation,SRP238435/SRX7426581
283
+ SRP238435,SRX7426583,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Minghui 63,H3K9me2,histone related,histone methylation,SRP238435/SRX7426583
284
+ SRP238435,SRX7426585,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Minghui 63,Pol II,DNA-binding protein,RNA polymerase,SRP238435/SRX7426585
285
+ SRP238435,SRX7426587,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,ZhenShan97,H3K4me3,histone related,histone methylation,SRP238435/SRX7426587
286
+ SRP238435,SRX7426589,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,ZhenShan97,H3K27ac,histone related,histone acetylation,SRP238435/SRX7426589
287
+ SRP238435,SRX7426591,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,ZhenShan97,H3K27me3,histone related,histone methylation,SRP238435/SRX7426591
288
+ SRP238435,SRX7426593,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,ZhenShan97,H3K4me1,histone related,histone methylation,SRP238435/SRX7426593
289
+ SRP238435,SRX7426595,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,ZhenShan97,H3K9me2,histone related,histone methylation,SRP238435/SRX7426595
290
+ SRP238435,SRX7426597,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,ZhenShan97,Pol II,DNA-binding protein,RNA polymerase,SRP238435/SRX7426597
291
+ SRP238435,SRX7426599,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,ZhenShan97,H3K4me3,histone related,histone methylation,SRP238435/SRX7426599
292
+ SRP238435,SRX7426601,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,ZhenShan97,H3K27ac,histone related,histone acetylation,SRP238435/SRX7426601
293
+ SRP238435,SRX7426603,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,ZhenShan97,H3K27me3,histone related,histone methylation,SRP238435/SRX7426603
294
+ SRP238435,SRX7426605,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,ZhenShan97,H3K4me1,histone related,histone methylation,SRP238435/SRX7426605
295
+ SRP238435,SRX7426607,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,ZhenShan97,H3K9me2,histone related,histone methylation,SRP238435/SRX7426607
296
+ SRP238435,SRX7426609,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,ZhenShan97,Pol II,DNA-binding protein,RNA polymerase,SRP238435/SRX7426609
297
+ SRP238435,SRX7426611,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,ZhenShan97,H3K4me3,histone related,histone methylation,SRP238435/SRX7426611
298
+ SRP238435,SRX7426613,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,ZhenShan97,H3K27ac,histone related,histone acetylation,SRP238435/SRX7426613
299
+ SRP238435,SRX7426615,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,ZhenShan97,H3K27me3,histone related,histone methylation,SRP238435/SRX7426615
300
+ SRP238435,SRX7426617,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,ZhenShan97,H3K4me1,histone related,histone methylation,SRP238435/SRX7426617
301
+ SRP238435,SRX7426619,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,ZhenShan97,H3K9me2,histone related,histone methylation,SRP238435/SRX7426619
302
+ SRP238435,SRX7426621,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,ZhenShan97,H3K4me3,histone related,histone methylation,SRP238435/SRX7426621
303
+ SRP238435,SRX7426623,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,ZhenShan97,H3K27ac,histone related,histone acetylation,SRP238435/SRX7426623
304
+ SRP238435,SRX7426625,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,ZhenShan97,H3K27me3,histone related,histone methylation,SRP238435/SRX7426625
305
+ SRP238435,SRX7426627,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,ZhenShan97,H3K4me1,histone related,histone methylation,SRP238435/SRX7426627
306
+ SRP238435,SRX7426629,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,ZhenShan97,H3K9me2,histone related,histone methylation,SRP238435/SRX7426629
307
+ SRP238435,SRX7426631,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Nipponbare,Pol II,DNA-binding protein,RNA polymerase,SRP238435/SRX7426631
308
+ SRP238435,SRX7426633,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Nipponbare,H3K4me3,histone related,histone methylation,SRP238435/SRX7426633
309
+ SRP238435,SRX7426635,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Nipponbare,H3K27ac,histone related,histone acetylation,SRP238435/SRX7426635
310
+ SRP238435,SRX7426637,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Nipponbare,H3K27me3,histone related,histone methylation,SRP238435/SRX7426637
311
+ SRP238435,SRX7426639,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Nipponbare,H3K4me1,histone related,histone methylation,SRP238435/SRX7426639
312
+ SRP238435,SRX7426641,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Nipponbare,H3K9me2,histone related,histone methylation,SRP238435/SRX7426641
313
+ SRP238435,SRX7426643,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Nipponbare,Pol II,DNA-binding protein,RNA polymerase,SRP238435/SRX7426643
314
+ SRP238435,SRX7426645,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Nipponbare,H3K4me3,histone related,histone methylation,SRP238435/SRX7426645
315
+ SRP238435,SRX7426647,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Nipponbare,H3K27ac,histone related,histone acetylation,SRP238435/SRX7426647
316
+ SRP238435,SRX7426649,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Nipponbare,H3K27me3,histone related,histone methylation,SRP238435/SRX7426649
317
+ SRP238435,SRX7426651,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Nipponbare,H3K4me1,histone related,histone methylation,SRP238435/SRX7426651
318
+ SRP238435,SRX7426653,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Nipponbare,H3K9me2,histone related,histone methylation,SRP238435/SRX7426653
319
+ SRP238435,SRX7426655,Rep1,Panicle,Panicle,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Nipponbare,Pol II,DNA-binding protein,RNA polymerase,SRP238435/SRX7426655
320
+ SRP238435,SRX7426657,Rep1,Root,Root,20.0,Long day,Moist filter paper,Moist filter paper,No treatment,No treatment,32.0,WT,,Japonica,Nipponbare,H3K4me3,histone related,histone methylation,SRP238435/SRX7426657
321
+ SRP238435,SRX7426659,Rep1,Root,Root,7.0,Long day,Moist filter paper,Moist filter paper,No treatment,No treatment,32.0,WT,,Japonica,Nipponbare,H3K27ac,histone related,histone acetylation,SRP238435/SRX7426659
322
+ SRP238435,SRX7426661,Rep1,Root,Root,7.0,Long day,Moist filter paper,Moist filter paper,No treatment,No treatment,32.0,WT,,Japonica,Nipponbare,H3K27me3,histone related,histone methylation,SRP238435/SRX7426661
323
+ SRP238435,SRX7426663,Rep1,Root,Root,7.0,Long day,Moist filter paper,Moist filter paper,No treatment,No treatment,32.0,WT,,Japonica,Nipponbare,H3K4me1,histone related,histone methylation,SRP238435/SRX7426663
324
+ SRP238435,SRX7426665,Rep1,Root,Root,7.0,Long day,Moist filter paper,Moist filter paper,No treatment,No treatment,32.0,WT,,Japonica,Nipponbare,H3K9me2,histone related,histone methylation,SRP238435/SRX7426665
325
+ SRP238435,SRX7426667,Rep1,Leaf,Mature leaf,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Nipponbare,H3K4me3,histone related,histone methylation,SRP238435/SRX7426667
326
+ SRP238435,SRX7426669,Rep1,Leaf,Mature leaf,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Nipponbare,H3K27ac,histone related,histone acetylation,SRP238435/SRX7426669
327
+ SRP238435,SRX7426671,Rep1,Leaf,Mature leaf,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Nipponbare,H3K27me3,histone related,histone methylation,SRP238435/SRX7426671
328
+ SRP238435,SRX7426673,Rep1,Leaf,Mature leaf,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Nipponbare,H3K4me1,histone related,histone methylation,SRP238435/SRX7426673
329
+ SRP238435,SRX7426675,Rep1,Leaf,Mature leaf,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Nipponbare,H3K9me2,histone related,histone methylation,SRP238435/SRX7426675
330
+ SRP238435,SRX7426677,Rep1,Leaf,Mature leaf,20.0,Long day,Paddy field,Paddy field,No treatment,No treatment,32.0,WT,,Japonica,Nipponbare,Pol II,DNA-binding protein,RNA polymerase,SRP238435/SRX7426677
331
+ SRP238435,SRX7426679,Rep1,Leaf,Young leaf,14.0,Long day,Hydroponics,Hydroponics,No treatment,No treatment,32.0,WT,,Japonica,Minghui63,H3K9me2,histone related,histone methylation,SRP238435/SRX7426679
332
+ SRP238435,SRX7426680,Rep1,Leaf,Young leaf,14.0,Long day,Hydroponics,Hydroponics,No treatment,No treatment,32.0,WT,,Japonica,Minghui63,H3K9me2,histone related,histone methylation,SRP238435/SRX7426680
333
+ SRP238435,SRX7426681,Rep1,Leaf,Young leaf,14.0,Long day,Hydroponics,Hydroponics,No treatment,No treatment,32.0,WT,,Japonica,Minghui63,H3K9me2,histone related,histone methylation,SRP238435/SRX7426681
334
+ SRP238435,SRX7426682,Rep1,Leaf,Young leaf,14.0,Long day,Hydroponics,Hydroponics,No treatment,No treatment,32.0,WT,,Japonica,Minghui63,H3K9me2,histone related,histone methylation,SRP238435/SRX7426682
335
+ SRP238435,SRX7426683,Rep1,Leaf,Young leaf,14.0,Long day,Hydroponics,Hydroponics,No treatment,No treatment,32.0,WT,,Japonica,ZhenShan97,H3K4me3,histone related,histone methylation,SRP238435/SRX7426683
336
+ SRP201150,SRX8071823,Rep1,Whole plant,Whole plant,12.0,Long day,MS,MS,No treatment,No treatment,30.0,WT,,Japonica,Japonica,CHR729,DNA-binding protein,Transcription factor,SRP201150/SRX8071823
337
+ SRP295617,SRX9623929,Rep1,Leaf,Leaf,28.0,,Soil,Soil,No treatment,No treatment,,WT,,Japonica,Nipponbare,OsGLK2,DNA-binding protein,Transcription factor,SRP295617/SRX9623929
338
+ SRP295617,SRX9623950,Rep1,Leaf,Leaf,28.0,,Soil,Soil,No treatment,No treatment,,WT,,Japonica,Nipponbare,OsGLK1,DNA-binding protein,Transcription factor,SRP295617/SRX9623950
339
+ SRP303912,SRX9981788,Rep1,Whole plant,Whole plant,,,Soil,,No treatment,No treatment,,WT,,Japonica,Japonica,ZH11,DNA-binding protein,Transcription factor,SRP303912/SRX9981788
340
+ SRP303912,SRX9981790,Rep1,Panicle,Panicle,,,Soil,,No treatment,No treatment,,WT,,Japonica,Japonica,HHC4,DNA-binding protein,Transcription factor,SRP303912/SRX9981790
341
+ SRP303912,SRX9981792,Rep1,Panicle,Panicle,,,Soil,,No treatment,No treatment,,WT,,Japonica,Japonica,HHC4,DNA-binding protein,Transcription factor,SRP303912/SRX9981792
342
+ SRP303912,SRX9981794,Rep1,Panicle,Panicle,,,Soil,,No treatment,No treatment,,WT,,Japonica,Japonica,HHC4,DNA-binding protein,Transcription factor,SRP303912/SRX9981794
343
+ SRP303912,SRX9981796,Rep1,Panicle,Panicle,,,Soil,Soil,No treatment,No treatment,,WT,,Japonica,Japonica,bZIP23,DNA-binding protein,Transcription factor,SRP303912/SRX9981796
344
+ SRP303912,SRX9981798,Rep1,Panicle,Panicle,,,Soil,Soil,No treatment,No treatment,,WT,,Japonica,Japonica,bZIP23,DNA-binding protein,Transcription factor,SRP303912/SRX9981798
345
+ SRP303912,SRX9981801,Rep1,Panicle,Panicle,,,Soil,Soil,No treatment,No treatment,,WT,,Japonica,Japonica,bZIP23,DNA-binding protein,Transcription factor,SRP303912/SRX9981801
346
+ SRP303912,SRX9981803,Rep1,Panicle,Panicle,,,Soil,Soil,No treatment,No treatment,,WT,,Japonica,Japonica,bZIP23,DNA-binding protein,Transcription factor,SRP303912/SRX9981803
347
+ SRP303912,SRX9981805,Rep1,Whole plant,Whole plant,,,Soil,Soil,No treatment,No treatment,,WT,,Japonica,Japonica,ARF4,DNA-binding protein,Transcription factor,SRP303912/SRX9981805
348
+ SRP303912,SRX9981807,Rep1,Whole plant,Whole plant,,,Soil,Soil,No treatment,No treatment,,WT,,Japonica,Japonica,ARF4,DNA-binding protein,Transcription factor,SRP303912/SRX9981807
349
+ SRP303912,SRX9981808,Rep1,Panicle,Panicle,,,Soil,,No treatment,No treatment,,WT,,Japonica,Japonica,ZH11,DNA-binding protein,Transcription factor,SRP303912/SRX9981808
350
+ SRP303912,SRX9981810,Rep1,Panicle,Panicle,,,Soil,,No treatment,No treatment,,WT,,Japonica,Japonica,HHC4,DNA-binding protein,Transcription factor,SRP303912/SRX9981810
351
+ SRP303912,SRX9981814,Rep1,Panicle,Panicle,,,Soil,,No treatment,No treatment,,WT,,Japonica,Japonica,HHC4,DNA-binding protein,Transcription factor,SRP303912/SRX9981814
CSP/Test.txt ADDED
The diff for this file is too large to render. See raw diff
 
CSP/Train.txt ADDED
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+ size 59280036
CSP/Val.txt ADDED
The diff for this file is too large to render. See raw diff
 
GEP/GEP_label.txt ADDED
@@ -0,0 +1,405 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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GEP/OS_GEP_Metadata.tsv ADDED
@@ -0,0 +1,406 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ Sample Title Project Tissue Organism Cultivar Genotype Treatment TotalReads UniqelyMappedRate PMID ReleaseDate
2
+ DRX012209 Cd_0hr_root PRJDB2154 root Oryza sativa Japonica Group -- -- Cd 0hr 3336496 0.8066 -- 6/10/2014
3
+ DRX012214 Cd_0hr_shoot PRJDB2154 shoot Oryza sativa Japonica Group -- -- Cd 0hr 4237607 0.9349 -- 6/10/2014
4
+ DRX012216 Cd_1hr_shoot PRJDB2154 shoot Oryza sativa Japonica Group -- -- Cd 1hr 4068312 0.9329 -- 6/10/2014
5
+ DRX012218 Cd_24hr_shoot PRJDB2154 shoot Oryza sativa Japonica Group -- -- Cd 24hr 3492029 0.8497 -- 6/10/2014
6
+ DRX005894 root control sample for ABA treatment PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- control 6930792 0.858 -- 11/25/2015
7
+ DRX005928 root control sample for Developmental Time 1 hour after PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- control 1h 7505964 0.7367 -- 11/25/2015
8
+ DRX005904 root under 1 day after ABA treatment PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- ABA 1day 7073444 0.7836 -- 11/25/2015
9
+ DRX005789 root under 1 day after Cold stress PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- Cold 1day 4706230 0.9604 -- 11/25/2015
10
+ DRX005753 root under 1 day after Low Cadmium stress PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- low cadmium 1day 6945088 0.7436 -- 11/25/2015
11
+ DRX005804 root under 1 hour after Flood stress PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- Flood 1h 6859844 0.7212 -- 11/25/2015
12
+ DRX005872 root under 1 hour after JA treatment PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- JA 1h 8654225 0.7192 -- 11/25/2015
13
+ DRX005763 root under 10 days after VeryLow Cadmium stress PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- verylow cadmium 10day 4559237 0.7057 -- 11/25/2015
14
+ DRX005902 root under 12 hours after ABA treatment PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- ABA 12h 11056206 0.7383 -- 11/25/2015
15
+ DRX005810 root under 12 hours after Flood stress PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- Flood 12h 7413295 0.716 -- 11/25/2015
16
+ DRX005830 root under 12 hours after Osmotic stress PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- Osmotic 12h 9508017 0.7868 -- 11/25/2015
17
+ DRX005898 root under 3 hours after ABA treatment PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- ABA 3h 8996022 0.8002 -- 11/25/2015
18
+ DRX005783 root under 3 hours after Cold stress PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- Cold 3h 4615446 0.7459 -- 11/25/2015
19
+ DRX005850 root under 3 hours after Drought stress PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- drought 3h 8843478 0.9415 -- 11/25/2015
20
+ DRX005806 root under 3 hours after Flood stress PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- Flood 3h 5024391 0.7403 -- 11/25/2015
21
+ DRX005755 root under 4 days after Low Cadmium stress PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- low cadmium 4day 5929604 0.7903 -- 11/25/2015
22
+ DRX005761 root under 4 days after VeryLow Cadmium stress PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- verylow cadmium 4day 6183548 0.7517 -- 11/25/2015
23
+ DRX005900 root under 6 hours after ABA treatment PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- ABA 6h 9485861 0.8017 -- 11/25/2015
24
+ DRX005808 root under 6 hours after Flood stress PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- Flood 6h 6285042 0.7371 -- 11/25/2015
25
+ DRX005828 root under 6 hours after Osmotic stress PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- Osmotic 6h 8431765 0.7933 -- 11/25/2015
26
+ DRX005882 shoot control sample for ABA treatment PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- control 9910727 0.8501 -- 11/25/2015
27
+ DRX005906 shoot control sample for Developmental Time 0 hour after PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- control 8057663 0.8008 -- 11/25/2015
28
+ DRX005916 shoot control sample for Developmental Time 1 day after PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- control 1day 17877588 0.792 -- 11/25/2015
29
+ DRX005908 shoot control sample for Developmental Time 1 hour after PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- control 1h 7715699 0.7978 -- 11/25/2015
30
+ DRX005924 shoot control sample for Developmental Time 10 days after PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- control 10day 6653471 0.7942 -- 11/25/2015
31
+ DRX005914 shoot control sample for Developmental Time 12 hours after PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- control 12h 9781326 0.8036 -- 11/25/2015
32
+ DRX005918 shoot control sample for Developmental Time 3 days after PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- control 3day 19985909 0.9093 -- 11/25/2015
33
+ DRX005910 shoot control sample for Developmental Time 3 hours after PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- control 3h 7406558 0.8095 -- 11/25/2015
34
+ DRX005920 shoot control sample for Developmental Time 4 days after PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- control 4day 7198193 0.803 -- 11/25/2015
35
+ DRX005922 shoot control sample for Developmental Time 5 days after PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- control 5day 10520925 0.7605 -- 11/25/2015
36
+ DRX005912 shoot control sample for Developmental Time 6 hours after PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- control 6h 17425998 0.91 -- 11/25/2015
37
+ DRX005832 shoot control sample for Drought stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- control 11939906 0.8627 -- 11/25/2015
38
+ DRX005858 shoot control sample for JA treatment PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- control 10197499 0.8493 -- 11/25/2015
39
+ DRX005844 shoot under 1 day after Drought stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- drought 1day 5709239 0.8872 -- 11/25/2015
40
+ DRX005799 shoot under 1 day after Flood stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- Flood 1day 7887355 0.9644 -- 11/25/2015
41
+ DRX005868 shoot under 1 day after JA treatment PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- JA 1day 5475335 0.8826 -- 11/25/2015
42
+ DRX005738 shoot under 1 day after Low Cadmium stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- low cadmium 1day 4693099 0.8035 -- 11/25/2015
43
+ DRX005744 shoot under 1 day after VeryLow Cadmium stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- verylow cadmium 1day 8003905 0.7709 -- 11/25/2015
44
+ DRX005884 shoot under 1 hour after ABA treatment PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- ABA 1h 6153995 0.8751 -- 11/25/2015
45
+ DRX005834 shoot under 1 hour after Drought stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- drought 1h 5656400 0.8834 -- 11/25/2015
46
+ DRX005791 shoot under 1 hour after Flood stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- Flood 1h 4984641 0.8072 -- 11/25/2015
47
+ DRX005860 shoot under 1 hour after JA treatment PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- JA 1h 6217137 0.8735 -- 11/25/2015
48
+ DRX005816 shoot under 1 hour after Osmotic stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- Osmotic 1h 6675112 0.8696 -- 11/25/2015
49
+ DRX005890 shoot under 12 hours after ABA treatment PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- ABA 12h 9167364 0.8694 -- 11/25/2015
50
+ DRX005841 shoot under 12 hours after Drought stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- drought 12h 7396658 0.8772 -- 11/25/2015
51
+ DRX005797 shoot under 12 hours after Flood stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- Flood 12h 5545031 0.7858 -- 11/25/2015
52
+ DRX005866 shoot under 12 hours after JA treatment PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- JA 12h 9065045 0.8718 -- 11/25/2015
53
+ DRX005822 shoot under 12 hours after Osmotic stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- Osmotic 12h 11272939 0.8625 -- 11/25/2015
54
+ DRX005802 shoot under 3 days after Flood stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- Flood 3day 5911042 0.9219 -- 11/25/2015
55
+ DRX005886 shoot under 3 hours after ABA treatment PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- ABA 3h 7188958 0.8624 -- 11/25/2015
56
+ DRX005862 shoot under 3 hours after JA treatment PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- JA 3h 8125866 0.8666 -- 11/25/2015
57
+ DRX005818 shoot under 3 hours after Osmotic stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- Osmotic 3h 8724965 0.8647 -- 11/25/2015
58
+ DRX005740 shoot under 4 days after Low Cadmium stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- low cadmium 4day 6055866 0.8116 -- 11/25/2015
59
+ DRX005746 shoot under 4 days after VeryLow Cadmium stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- verylow cadmium 4day 3942962 0.7899 -- 11/25/2015
60
+ DRX005888 shoot under 6 hours after ABA treatment PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- ABA 6h 8354169 0.8567 -- 11/25/2015
61
+ DRX005775 shoot under 6 hours after Cold stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- Cold 6h 5758572 0.7305 -- 11/25/2015
62
+ DRX005839 shoot under 6 hours after Drought stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- drought 6h 10433330 0.8649 -- 11/25/2015
63
+ DRX005795 shoot under 6 hours after Flood stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- Flood 6h 6111132 0.7596 -- 11/25/2015
64
+ DRX005864 shoot under 6 hours after JA treatment PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- JA 6h 9004063 0.858 -- 11/25/2015
65
+ DRX005820 shoot under 6 hours after Osmotic stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- Osmotic 6h 8827585 0.8561 -- 11/25/2015
66
+ DRX002033 IAC 25_root_0day PRJDB2658 root Oryza sativa Japonica Group IAC 25 -- control 4627099 0.8552 -- 5/14/2014
67
+ DRX002037 IAC 25_root_22day PRJDB2658 root Oryza sativa Japonica Group IAC 25 -- Pi- 22day 5287887 0.8431 -- 5/14/2014
68
+ DRX002041 IAC 25_shoot_0day PRJDB2658 shoot Oryza sativa Japonica Group IAC 25 -- control 7138732 0.7848 -- 5/14/2014
69
+ DRX002044 IAC 25_shoot_22day PRJDB2658 shoot Oryza sativa Japonica Group IAC 25 -- Pi- 22day 7918695 0.866 -- 5/14/2014
70
+ DRX002019 Nipponbare_root_0day PRJDB2658 root Oryza sativa Japonica Group Nipponbare -- control 5320625 0.8343 -- 5/14/2014
71
+ DRX002023 Nipponbare_root_22day PRJDB2658 root Oryza sativa Japonica Group Nipponbare -- Pi- 22day 6121916 0.8016 -- 5/14/2014
72
+ DRX002027 Nipponbare_shoot_0day PRJDB2658 shoot Oryza sativa Japonica Group Nipponbare -- control 4993676 0.8986 -- 5/14/2014
73
+ DRX002030 Nipponbare_shoot_22day PRJDB2658 shoot Oryza sativa Japonica Group Nipponbare -- Pi- 22day 6419025 0.9009 -- 5/14/2014
74
+ DRX002047 Vary Lava 701_root_0day PRJDB2658 root Oryza sativa Japonica Group Vary Lava 701 -- control 5263394 0.851 -- 5/14/2014
75
+ DRX002051 Vary Lava 701_root_22day PRJDB2658 root Oryza sativa Japonica Group Vary Lava 701 -- Pi- 22day 6272014 0.8273 -- 5/14/2014
76
+ DRX002055 Vary Lava 701_shoot_0day PRJDB2658 shoot Oryza sativa Japonica Group Vary Lava 701 -- control 5443323 0.882 -- 5/14/2014
77
+ DRX002058 Vary Lava 701_shoot_22day PRJDB2658 shoot Oryza sativa Japonica Group Vary Lava 701 -- Pi- 22day 6777320 0.7799 -- 5/14/2014
78
+ DRX057388 arbuscular mycorrhizal (AM) PRJDB4933 root Oryza sativa Japonica Group Nipponbare -- arbuscular mycorrhizal (AM) 12292014 0.913 -- 1/26/2018
79
+ DRX057390 non-mycorrhizal (NM) PRJDB4933 root Oryza sativa Japonica Group Nipponbare -- control 13087811 0.9213 -- 1/26/2018
80
+ SRX612565 MET1-2_Mm_heterozygote PRJNA253163 shoot Oryza sativa Japonica Group Nipponbare MET1-2_Mm -- 49495138 0.9284 25002488 7/24/2014
81
+ SRX612564 MET1-2_WT PRJNA253163 shoot Oryza sativa Japonica Group Nipponbare wild type -- 60883471 0.916 25002488 7/24/2014
82
+ SRX612566 MET1-2_mm_homozygote PRJNA253163 shoot Oryza sativa Japonica Group Nipponbare met1-2 mutrant -- 43890731 0.9268 25002488 7/24/2014
83
+ SRX736213 Rice_BA2h-Root-Rep3 PRJNA264298 root Oryza sativa Japonica Group Nipponbare -- 6-benzylaminopurine 2hrs 46376460 0.9426 -- 8/10/2016
84
+ SRX739680 Nipponbare leaf PRJNA264731 leaf Oryza sativa Japonica Group Nipponbare -- -- 62515482 0.9621 29158416 10/23/2014
85
+ SRX831137 2X4_En_RNA Hybrids rice endosperm which diploid as female parent and autotetraploid as male parent RNA PRJNA271246 endosperm Oryza sativa Japonica Group 2428 -- -- 64193038 0.8397 -- 1/6/2016
86
+ SRX831134 4X_En_RNA Diploid rice 02428 its isogenic autotetraploids endosperm RNA PRJNA271246 endosperm Oryza sativa Japonica Group 2428 -- -- 68361206 0.8744 -- 1/6/2016
87
+ SRX864649 Cadmium treated 1 hour 100 uM cadmium PRJNA273178 leaf Oryza sativa Japonica Group japonica -- 100 uM cadmium 1 hour 25267247 0.936 -- 2/3/2016
88
+ SRX864596 Cadmium treated 1 hour 100 uM cadmium PRJNA273178 root Oryza sativa Japonica Group japonica -- 100 uM cadmium 1 hour 27680251 0.899 -- 2/3/2016
89
+ SRX864604 untreated 0 hour PRJNA273178 leaf Oryza sativa Japonica Group japonica -- untreated 0 hour 25622129 0.9364 -- 2/3/2016
90
+ SRX864565 untreated 0 hour PRJNA273178 root Oryza sativa Japonica Group japonica -- untreated 0 hour 27044522 0.7971 -- 2/3/2016
91
+ SRX864605 untreated 1 hour PRJNA273178 leaf Oryza sativa Japonica Group japonica -- untreated 1 hour 25080450 0.9352 -- 2/3/2016
92
+ SRX864584 untreated 1 hour PRJNA273178 root Oryza sativa Japonica Group japonica -- untreated 1 hour 30053131 0.8287 -- 2/3/2016
93
+ SRX978709 48 hrs after inoculation with B8-12 PRJNA280380 leaf Oryza sativa Japonica Group Nipponbare -- 48 hrs after inoculation with B8-12 24524435 0.9511 26257749 5/1/2015
94
+ SRX978703 48 hrs after inoculation with BLS279 PRJNA280380 leaf Oryza sativa Japonica Group Nipponbare -- 48 hrs after inoculation with BLS279 38356009 0.9559 26257749 5/1/2015
95
+ SRX978706 48 hrs after inoculation with CFBP2286 PRJNA280380 leaf Oryza sativa Japonica Group Nipponbare -- 48 hrs after inoculation with CFBP2286 14383864 0.9518 26257749 5/1/2015
96
+ SRX978724 48 hrs after inoculation with CFBP7341 PRJNA280380 leaf Oryza sativa Japonica Group Nipponbare -- 48 hrs after inoculation with CFBP7341 40501929 0.9613 26257749 5/1/2015
97
+ SRX978727 48 hrs after inoculation with CFBP7342 PRJNA280380 leaf Oryza sativa Japonica Group Nipponbare -- 48 hrs after inoculation with CFBP7342 34534609 0.9569 26257749 5/1/2015
98
+ SRX978715 48 hrs after inoculation with RS105 PRJNA280380 leaf Oryza sativa Japonica Group Nipponbare -- 48 hrs after inoculation with RS105 42745641 0.9514 26257749 5/1/2015
99
+ SRX978730 48 hrs after mock-inoculation PRJNA280380 leaf Oryza sativa Japonica Group Nipponbare -- mock 26656102 0.9526 26257749 5/1/2015
100
+ SRX1484754 coleoptileplus 1hr shade PRJNA306090 coleoptile Oryza sativa Japonica Group Nipponbare -- plus 1hr shade 17485625 0.7456 26888633 12/19/2016
101
+ SRX1484758 the first leafplus 1hr shade PRJNA306090 the first leaf Oryza sativa Japonica Group Nipponbare -- plus 1hr shade 22851965 0.7254 26888633 12/19/2016
102
+ SRX1484760 the first leafplus 1hr white light PRJNA306090 the first leaf Oryza sativa Japonica Group Nipponbare -- plus 1hr white light 15976140 0.7753 26888633 12/19/2016
103
+ SRX1488636 elongating primary branch meristem plus axillary meristem PRJNA306226 elongating primary branch meristem plus axillary meristem Oryza sativa Japonica Group Nipponbare -- -- 73195534 0.772 26932536 3/4/2016
104
+ SRX1618253 Long Day Drought PRJNA314526 leaf Oryza sativa Japonica Group Nipponbare -- Long Day Drought 33738285 0.889 27111837 3/1/2017
105
+ SRX1618257 Short Day Drought PRJNA314526 leaf Oryza sativa Japonica Group Nipponbare -- Short Day Drought 32798250 0.9619 27111837 3/1/2017
106
+ SRX1618255 Short Day Watered PRJNA314526 leaf Oryza sativa Japonica Group Nipponbare -- Short Day Watered 34717753 0.8996 27111837 3/1/2017
107
+ SRX1687067 Lr34 transgenic line 16 PRJNA317706 4th leaf Oryza sativa Japonica Group Nipponbare LR34res transgenic line -- 31828141 0.95 30913300 12/31/2017
108
+ SRX1687079 Lr34 transgenic line 16 PRJNA317706 flag leaf Oryza sativa Japonica Group Nipponbare LR34res transgenic line -- 37518379 0.9392 30913300 12/31/2017
109
+ SRX1687082 Lr34 transgenic line 5 PRJNA317706 4th leaf Oryza sativa Japonica Group Nipponbare LR34res transgenic line -- 34223542 0.9481 30913300 12/31/2017
110
+ SRX1687072 Lr34 transgenic line 5 PRJNA317706 flag leaf Oryza sativa Japonica Group Nipponbare LR34res transgenic line -- 35021495 0.9391 30913300 12/31/2017
111
+ SRX1687085 wild-type line 16 PRJNA317706 4th leaf Oryza sativa Japonica Group Nipponbare wild type -- 32943065 0.9479 30913300 12/31/2017
112
+ SRX1687075 wild-type line 16 PRJNA317706 flag leaf Oryza sativa Japonica Group Nipponbare wild type -- 44809751 0.9436 30913300 12/31/2017
113
+ SRX1687065 wild-type line 5 PRJNA317706 4th leaf Oryza sativa Japonica Group Nipponbare wild type -- 33990421 0.7542 30913300 12/31/2017
114
+ SRX1687069 wild-type line 5 PRJNA317706 flag leaf Oryza sativa Japonica Group Nipponbare wild type -- 30667110 0.9311 30913300 12/31/2017
115
+ SRX1742540 EIP1_OX leaf PRJNA320536 leaf Oryza sativa Japonica Group ZH11 EIP1_OX -- 27129213 0.9014 27978435 2/6/2017
116
+ SRX1742538 ebr1 mutant leaf PRJNA320536 leaf Oryza sativa Japonica Group ZH11 ebr1 mutant -- 28257562 0.882 27978435 2/6/2017
117
+ SRX1742536 wild type leaf PRJNA320536 leaf Oryza sativa Japonica Group ZH11 wild type -- 28242999 0.9091 27978435 2/6/2017
118
+ SRX1760732 osddm1a/1b mutant seedling PRJNA321532 seedling Oryza sativa Japonica Group DongJin osddm1a/1b mutant -- 35700950 0.9247 27208249 6/13/2016
119
+ SRX1760730 wild type seedling PRJNA321532 seedling Oryza sativa Japonica Group DongJin wild type -- 26823185 0.9307 27208249 6/13/2016
120
+ SRX1828640 Four leaf stage seedling modd2 mutant PRJNA324688 Up groud part Oryza sativa Japonica Group DongJin modd2 mutant -- 12139896 0.8912 27468891 9/7/2016
121
+ SRX1828642 Four leaf stage seedling wild type PRJNA324688 Up groud part Oryza sativa Japonica Group DongJin wild type -- 12143816 0.8941 27468891 9/7/2016
122
+ SRX1899055 anthers phya mutant PRJNA327987 anther Oryza sativa Japonica Group Nipponbare phya mutant -- 8349302 0.9401 28743949 7/3/2017
123
+ SRX1899052 anthers phya phyb mutant PRJNA327987 anther Oryza sativa Japonica Group Nipponbare phya phyb mutant -- 10601576 0.9317 28743949 7/3/2017
124
+ SRX1899058 anthers phyb mutant PRJNA327987 anther Oryza sativa Japonica Group Nipponbare phyb mutant -- 9988189 0.8385 28743949 7/3/2017
125
+ SRX1899049 anthers wild type PRJNA327987 anther Oryza sativa Japonica Group Nipponbare wild type -- 9436855 0.9305 28743949 7/3/2017
126
+ SRX1983462 wild type_root tips PRJNA335701 root tip Oryza sativa Japonica Group Hwayoung wild type -- 22586309 0.9372 28830102 6/22/2017
127
+ SRX1983460 wox11 mutant_root tips PRJNA335701 root tip Oryza sativa Japonica Group Hwayoung wox11 mutant -- 43807682 0.925 28830102 6/22/2017
128
+ SRX2273218 2nd leaf, DAH12 PRJNA350792 2nd leaf Oryza sativa Japonica Group Dongjin -- -- 41240765 0.9213 28821707 9/22/2017
129
+ SRX2273221 2nd leaf, DAH20 PRJNA350792 2nd leaf Oryza sativa Japonica Group Dongjin -- -- 18194049 0.9053 28821707 9/22/2017
130
+ SRX2273224 2nd leaf, DAH28 PRJNA350792 2nd leaf Oryza sativa Japonica Group Dongjin -- -- 43263150 0.8943 28821707 9/22/2017
131
+ SRX2273228 2nd leaf, DAH36 PRJNA350792 2nd leaf Oryza sativa Japonica Group Dongjin -- -- 12252385 0.8811 28821707 9/22/2017
132
+ SRX2273215 2nd leaf, DAH4 PRJNA350792 2nd leaf Oryza sativa Japonica Group Dongjin -- -- 12555448 0.8619 28821707 9/22/2017
133
+ SRX2273200 Flag leaf, DAH12 PRJNA350792 flag leaf Oryza sativa Japonica Group Dongjin -- -- 35538139 0.8952 28821707 9/22/2017
134
+ SRX2273203 Flag leaf, DAH20 PRJNA350792 flag leaf Oryza sativa Japonica Group Dongjin -- -- 62280681 0.8193 28821707 9/22/2017
135
+ SRX2273206 Flag leaf, DAH28 PRJNA350792 flag leaf Oryza sativa Japonica Group Dongjin -- -- 15361557 0.8015 28821707 9/22/2017
136
+ SRX2273209 Flag leaf, DAH36 PRJNA350792 flag leaf Oryza sativa Japonica Group Dongjin -- -- 24410810 0.8682 28821707 9/22/2017
137
+ SRX2273197 Flag leaf, DAH4 PRJNA350792 flag leaf Oryza sativa Japonica Group Dongjin -- -- 32130138 0.7301 28821707 9/22/2017
138
+ SRX2273212 Flag leaf, DAH44 PRJNA350792 flag leaf Oryza sativa Japonica Group Dongjin -- -- 26754053 0.8849 28821707 9/22/2017
139
+ SRX2373991 0 Days in Short Day PRJNA354868 shoot apical meristems Oryza sativa Japonica Group Nipponbare -- 0 Days in Short Day 25588562 0.9582 30936438 11/30/2018
140
+ SRX2374007 0 Days in Short Day PRJNA354868 shoot apical meristems Oryza sativa Japonica Group Taichung 65 -- 0 Days in Short Day 17200329 0.9486 30936438 11/30/2018
141
+ SRX2374004 12 Days in Short Day PRJNA354868 shoot apical meristems Oryza sativa Japonica Group Nipponbare -- 12 Days in Short Day 19122887 0.9547 30936438 11/30/2018
142
+ SRX2374009 4 Days in Short Day PRJNA354868 shoot apical meristems Oryza sativa Japonica Group Taichung 65 -- 4 Days in Short Day 21037227 0.953 30936438 11/30/2018
143
+ SRX2373999 8 Days in Short Day PRJNA354868 shoot apical meristems Oryza sativa Japonica Group Nipponbare -- 8 Days in Short Day 6394087 0.9504 30936438 11/30/2018
144
+ SRX2374013 8 Days in Short Day PRJNA354868 shoot apical meristems Oryza sativa Japonica Group Taichung 65 -- 8 Days in Short Day 18370968 0.9603 30936438 11/30/2018
145
+ SRX2441452 M. oryzae infection 0h PRJNA358135 leaf Oryza sativa Japonica Group Nipponbare -- mock 13562797 0.9248 30825020 9/1/2017
146
+ SRX2441447 M. oryzae infection FJ87_24h PRJNA358135 leaf Oryza sativa Japonica Group Nipponbare -- M. oryzae infection FJ87_24h 10896268 0.9228 30825020 9/1/2017
147
+ SRX2441457 M. oryzae infection FJ87_48h PRJNA358135 leaf Oryza sativa Japonica Group Nipponbare -- M. oryzae infection FJ87_48h 13211565 0.9208 30825020 9/1/2017
148
+ SRX2441450 M. oryzae infection GY11_24h PRJNA358135 leaf Oryza sativa Japonica Group Nipponbare -- M. oryzae infection GY11_24h 11681273 0.9145 30825020 9/1/2017
149
+ SRX2441464 M. oryzae infection GY11_48h PRJNA358135 leaf Oryza sativa Japonica Group Nipponbare -- M. oryzae infection GY11_48h 15084534 0.9225 30825020 9/1/2017
150
+ SRX2440461 auxin (50µM 2,4-D) 1 day PRJNA358595 root Oryza sativa Japonica Group Nipponbare -- auxin (50µM 2,4-D) 1 day 24807997 0.9407 27891144 1/2/2019
151
+ SRX2440473 auxin (50µM 2,4-D) 14 days PRJNA358595 root Oryza sativa Japonica Group Nipponbare -- auxin (50µM 2,4-D) 14 days 28367352 0.8997 27891144 1/2/2019
152
+ SRX2440467 auxin (50µM 2,4-D) 7 days PRJNA358595 root Oryza sativa Japonica Group Nipponbare -- auxin (50µM 2,4-D) 7 days 24752940 0.9128 27891144 1/2/2019
153
+ SRX2440458 control 1 day PRJNA358595 root Oryza sativa Japonica Group Nipponbare -- control 1 day 25076818 0.9311 27891144 1/2/2019
154
+ SRX2440464 control 7 days PRJNA358595 root Oryza sativa Japonica Group Nipponbare -- control 7 days 32306428 0.9009 27891144 1/2/2019
155
+ SRX2682068 Full nutrient PRJNA380641 shoot Oryza sativa Japonica Group Nipponbare -- Full nutrient 65082473 0.8939 -- 3/27/2018
156
+ SRX2823835 Grain PRJNA386888 caryopsis Oryza sativa Japonica Group Nipponbare GSK5-/- -- 31165051 0.896 -- 5/19/2017
157
+ SRX3041037 AG1 IA strain of R. solani at 12h PRJNA392837 leaf Oryza sativa Japonica Group Lemont -- AG1 IA strain of R. solani at 12h 28587331 0.7929 28861102 7/26/2017
158
+ SRX3041042 AG1 IA strain of R. solani at 24h PRJNA392837 leaf Oryza sativa Japonica Group Lemont -- AG1 IA strain of R. solani at 24h 26766211 0.7994 28861102 7/26/2017
159
+ SRX3041035 AG1 IA strain of R. solani at 36h PRJNA392837 leaf Oryza sativa Japonica Group Lemont -- AG1 IA strain of R. solani at 36h 27854421 0.7348 28861102 7/26/2017
160
+ SRX3041040 leaf control PRJNA392837 leaf Oryza sativa Japonica Group Lemont -- mock 29300084 0.8414 28861102 7/26/2017
161
+ SRX3070797 OsSAMS1 CRISPR/Cas9 transgene PRJNA397572 aboveground part of plant Oryza sativa Japonica Group Zhonghua 11 OsSAMS1 KO -- 12693273 0.8937 28994391 10/30/2017
162
+ SRX3070794 OsSAMS1 overexpression transgene PRJNA397572 aboveground part of plant Oryza sativa Japonica Group Zhonghua 11 OsSAMS1 OX -- 12585489 0.8939 28994391 10/30/2017
163
+ SRX3070789 RDV-infected (inoculated with insect carrying RDV) PRJNA397572 aboveground part of plant Oryza sativa Japonica Group Zhonghua 11 -- RDV infected 12948842 0.7145 28994391 10/30/2017
164
+ SRX3070786 mock (inoculated with virus free insect) PRJNA397572 aboveground part of plant Oryza sativa Japonica Group Zhonghua 11 -- mock 15442940 0.8403 28994391 10/30/2017
165
+ SRX3070792 wild type PRJNA397572 aboveground part of plant Oryza sativa Japonica Group Zhonghua 11 wild type -- 12695178 0.9043 28994391 10/30/2017
166
+ SRX3098662 Wild type rice PRJNA398554 young panicle Oryza sativa Japonica Group Zhonghua 11 wild type -- 20353533 0.8857 30652247 4/12/2019
167
+ SRX3098665 dcl3b knockdown mutant rice PRJNA398554 young panicle Oryza sativa Japonica Group Zhonghua 11 dcl3b KO -- 31282722 0.8907 30652247 4/12/2019
168
+ SRX3773580 nitrogen deficiency PRJNA437192 root Oryza sativa Japonica Group Koshihikari -- N- 4555126 0.7745 -- 3/8/2018
169
+ SRX3773594 rich nutrient PRJNA437192 root Oryza sativa Japonica Group Koshihikari -- control 4245247 0.7789 -- 3/8/2018
170
+ SRX3773934 osipms1 mutant PRJNA437217 seed Oryza sativa Japonica Group japonica osipms1 mutant -- 30816921 0.8678 -- 3/8/2018
171
+ SRX3985211 infloresence control PRJNA449939 infloresence Oryza sativa Japonica Group Nipponbare -- control 25888403 0.8374 -- 4/22/2018
172
+ SRX3985215 infloresence drought stress PRJNA449939 infloresence Oryza sativa Japonica Group Nipponbare -- drought stress 14046851 0.8652 -- 4/22/2018
173
+ SRX4130188 th1 mutant young panicle PRJNA470824 young panicle Oryza sativa Japonica Group Nipponbare th1 mutant -- 22081378 0.8476 30725309 5/27/2018
174
+ SRX4130191 wild type young panicle PRJNA470824 young panicle Oryza sativa Japonica Group Nipponbare wild type -- 25226061 0.8892 30725309 5/27/2018
175
+ SRX4647163 nf-yc11 mutant PRJNA489631 endosperm Oryza sativa Japonica Group ZH11* nf-yc11 mutant -- 21805054 0.8749 31211389 8/27/2019
176
+ SRX4647160 wildtype PRJNA489631 endosperm Oryza sativa Japonica Group ZH11* wild type -- 31672438 0.8582 31211389 8/27/2019
177
+ SRX5173466 OX-1 OsbZIP81 PRJNA510886 seedling Oryza sativa Japonica Group Zhonghua 11 OX-1 -- 31566658 0.8332 31086007 6/1/2019
178
+ SRX5173463 OX-2 OsbZIP81 PRJNA510886 seedling Oryza sativa Japonica Group Zhonghua 11 OX-2 -- 32476179 0.7987 31086007 6/1/2019
179
+ SRX5168470 100percent_Water_0.625mM_Nitrogen PRJNA510920 leaf Oryza sativa Japonica Group Nipponbare -- 100percent_Water_0.625mM_Nitrogen 14048669 0.7694 30914651 2/20/2019
180
+ SRX5168471 100percent_Water_1.25mM_Nitrogen PRJNA510920 leaf Oryza sativa Japonica Group Nipponbare -- 100percent_Water_1.25mM_Nitrogen 13625804 0.8075 30914651 2/20/2019
181
+ SRX5168473 100percent_Water_2.5mM_Nitrogen PRJNA510920 leaf Oryza sativa Japonica Group Nipponbare -- 100percent_Water_2.5mM_Nitrogen 15486458 0.8235 30914651 2/20/2019
182
+ SRX5168609 12.5percent_Water_0.625mM_Nitrogen PRJNA510920 leaf Oryza sativa Japonica Group Nipponbare -- 12.5percent_Water_0.625mM_Nitrogen 13294174 0.8944 30914651 2/20/2019
183
+ SRX5168624 12.5percent_Water_1.25mM_Nitrogen PRJNA510920 leaf Oryza sativa Japonica Group Nipponbare -- 12.5percent_Water_1.25mM_Nitrogen 8486941 0.8783 30914651 2/20/2019
184
+ SRX5168623 12.5percent_Water_2.5mM_Nitrogen PRJNA510920 leaf Oryza sativa Japonica Group Nipponbare -- 12.5percent_Water_2.5mM_Nitrogen 9959556 0.8576 30914651 2/20/2019
185
+ SRX5168611 12.5percent_Water_5mM_Nitrogen PRJNA510920 leaf Oryza sativa Japonica Group Nipponbare -- 12.5percent_Water_5mM_Nitrogen 15263998 0.9211 30914651 2/20/2019
186
+ SRX5168706 25percent_Water_0.625mM_Nitrogen PRJNA510920 leaf Oryza sativa Japonica Group Nipponbare -- 25percent_Water_0.625mM_Nitrogen 13485142 0.9336 30914651 2/20/2019
187
+ SRX5168704 25percent_Water_1.25mM_Nitrogen PRJNA510920 leaf Oryza sativa Japonica Group Nipponbare -- 25percent_Water_1.25mM_Nitrogen 16342066 0.8727 30914651 2/20/2019
188
+ SRX5168445 25percent_Water_2.5mM_Nitrogen PRJNA510920 leaf Oryza sativa Japonica Group Nipponbare -- 25percent_Water_2.5mM_Nitrogen 13004608 0.8214 30914651 2/20/2019
189
+ SRX5168539 50percent_Water_0.625mM_Nitrogen PRJNA510920 leaf Oryza sativa Japonica Group Nipponbare -- 50percent_Water_0.625mM_Nitrogen 17448763 0.8251 30914651 2/20/2019
190
+ SRX5168540 50percent_Water_1.25mM_Nitrogen PRJNA510920 leaf Oryza sativa Japonica Group Nipponbare -- 50percent_Water_1.25mM_Nitrogen 13999124 0.8062 30914651 2/20/2019
191
+ SRX5168646 Low_Water_High_Nitrogen PRJNA510920 leaf Oryza sativa Japonica Group Nipponbare -- Low_Water_High_Nitrogen 12061701 0.7389 30914651 2/20/2019
192
+ SRX5411264 NPB rice cultivar PRJNA523846 Leaves Oryza sativa Japonica Group NPB -- Inoculated with Pyricularia oryzae 24447292 0.8871 33043566 2/25/2019
193
+ SRX5411255 NPB rice cultivar PRJNA523846 Leaves Oryza sativa Japonica Group NPB -- control 29958420 0.8845 33043566 2/25/2019
194
+ SRX5538645 SNAC1-OE PRJNA527848 seedling Oryza sativa Japonica Group ZH11 SNAC1-OE drought 38344866 0.947 31402926 3/20/2019
195
+ SRX5538651 ZH11-WT PRJNA527848 seedling Oryza sativa Japonica Group ZH11 wild type drought 42513528 0.9472 31402926 3/20/2019
196
+ SRX6855707 control PRJNA565146 straw Oryza sativa Japonica Group japonica -- control 109262433 0.9215 31621135;32513834 9/17/2019
197
+ SRX6855710 moderate soil drying PRJNA565146 straw Oryza sativa Japonica Group japonica -- moderate soil drying 90267643 0.9009 31621135;32513834 9/17/2019
198
+ DRX021289 cerk1-Mock-1 PRJDB1490 leaf Oryza sativa Japonica Group Nipponbare BL no. 2 cerk1 mutant chitin receptor gene transcected 13484127 0.8002 25231970 2/25/2015
199
+ DRX021292 cerk1-Myc-1 PRJDB1490 leaf Oryza sativa Japonica Group Nipponbare BL no. 2 cerk1 mutant chitin receptor gene transcected, Myc-LCO (arbuscular mycorrhizal (AM) fungus-secreted substance)-treated 11232194 0.9042 25231970 2/25/2015
200
+ DRX021286 WT-GN7-1 PRJDB1490 leaf Oryza sativa Japonica Group Nipponbare BL no. 2 wild type chitin oligosaccharides (N-acetylchitoheptaose: GN7)-treatted 6612859 0.9188 25231970 2/25/2015
201
+ DRX021280 WT-Mock-1 PRJDB1490 leaf Oryza sativa Japonica Group Nipponbare BL no. 2 wild type mock 8563991 0.9085 25231970 2/25/2015
202
+ DRX021283 WT-Myc-1 PRJDB1490 leaf Oryza sativa Japonica Group Nipponbare BL no. 2 wild type mycorrhizal fungi Myc-infected 7260040 0.8112 25231970 2/25/2015
203
+ DRX017638 35S:OSH1-GR +DEX 24h rep1 PRJDB2920 young leaves 1 mm above shoot apices Oryza sativa Japonica Group T65 35S:OSH1-GR DEX 24h 26425861 0.8671 25194027 6/26/2014
204
+ DRX017640 WT +DEX 3h rep1 PRJDB2920 young leaves 1 mm above shoot apices Oryza sativa Japonica Group T65 wild type DEX 3h 26537395 0.8325 25194027 6/26/2014
205
+ DRX017641 WT +DEX 6h rep1 PRJDB2920 young leaves 1 mm above shoot apices Oryza sativa Japonica Group T65 wild type DEX 6h 22917817 0.851 25194027 6/26/2014
206
+ DRX070135 early meiosis eat1 M1 PRJDB5291 anther Oryza sativa Japonica Group Nipponbare eat1 mutant -- 20653458 0.9141 -- 1/26/2018
207
+ DRX070132 late meiosis eat1 L1 PRJDB5291 anther Oryza sativa Japonica Group Nipponbare eat1 mutant -- 19177059 0.9167 -- 1/26/2018
208
+ DRX070138 premeiosis eat1 S1 PRJDB5291 anther Oryza sativa Japonica Group Nipponbare eat1 mutant -- 20050843 0.9124 -- 1/26/2018
209
+ DRX114847 early meiosis mel1 M1 PRJDB5291 anther Oryza sativa Japonica Group Nipponbare mel1-1 mutant -- 17135628 0.9198 -- 2/1/2018
210
+ DRX114844 late meiosis mel1 L1 PRJDB5291 anther Oryza sativa Japonica Group Nipponbare mel1-1 mutant -- 19510457 0.9271 -- 2/1/2018
211
+ DRX114850 premeiosis mel1 S1 PRJDB5291 anther Oryza sativa Japonica Group Nipponbare mel1-1 mutant -- 18445769 0.8969 -- 2/1/2018
212
+ DRX070126 early meiosis WT M1 PRJDB5291 anther Oryza sativa Japonica Group Nipponbare wild type -- 22816667 0.9135 -- 1/26/2018
213
+ DRX070123 late meiosis WT L1 PRJDB5291 anther Oryza sativa Japonica Group Nipponbare wild type -- 18795812 0.9259 -- 1/26/2018
214
+ DRX070129 premeiosis WT S1 PRJDB5291 anther Oryza sativa Japonica Group Nipponbare wild type -- 18447170 0.908 -- 1/26/2018
215
+ DRX070072 the 4-leaf stage 1 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group C9285 -- 1 h post submergence 9500900 0.9075 -- 1/1/2017
216
+ DRX070090 the 6-leaf stage 1 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group C9285 -- 1 h post submergence 6584777 0.912 -- 1/1/2017
217
+ DRX070081 the 4-leaf stage 12 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group C9285 -- 12 h post submergence 8521861 0.8931 -- 1/1/2017
218
+ DRX070099 the 6-leaf stage 12 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group C9285 -- 12 h post submergence 9473559 0.9177 -- 1/1/2017
219
+ DRX070084 the 4-leaf stage 24 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group C9285 -- 24 h post submergence 7627553 0.8822 -- 1/1/2017
220
+ DRX070102 the 6-leaf stage 24 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group C9285 -- 24 h post submergence 7394886 0.9203 -- 1/1/2017
221
+ DRX070075 the 4-leaf stage 3 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group C9285 -- 3 h post submergence 7936717 0.9184 -- 1/1/2017
222
+ DRX070093 the 6-leaf stage 3 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group C9285 -- 3 h post submergence 5588520 0.9192 -- 1/1/2017
223
+ DRX070078 the 4-leaf stage 6 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group C9285 -- 6 h post submergence 7251305 0.9218 -- 1/1/2017
224
+ DRX070096 the 6-leaf stage 6 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group C9285 -- 6 h post submergence 7577865 0.9067 -- 1/1/2017
225
+ DRX070069 the 4-leaf stage 0 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group C9285 -- control 5908732 0.9115 -- 1/1/2017
226
+ DRX070087 the 6-leaf stage 0 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group C9285 -- control 7029193 0.9135 -- 1/1/2017
227
+ DRX070108 the 6-leaf stage 1 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group Taichung-65 -- 1 h post submergence 7969976 0.9456 -- 1/1/2017
228
+ DRX070117 the 6-leaf stage 12 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group Taichung-65 -- 12 h post submergence 7586161 0.9292 -- 1/1/2017
229
+ DRX070120 the 6-leaf stage 24 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group Taichung-65 -- 24 h post submergence 15541928 0.8621 -- 1/1/2017
230
+ DRX070111 the 6-leaf stage 3 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group Taichung-65 -- 3 h post submergence 5581754 0.9205 -- 1/1/2017
231
+ DRX070114 the 6-leaf stage 6 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group Taichung-65 -- 6 h post submergence 7058654 0.933 -- 1/1/2017
232
+ DRX070105 the 6-leaf stage 0 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group Taichung-65 -- control 8162369 0.9382 -- 1/1/2017
233
+ DRX082822 7_MT2_JA1 PRJDB5600 leaf Oryza sativa Japonica Group Nihonmasari OsMYC2-knockdown JA-treated 17510389 0.9679 28067270 3/11/2019
234
+ DRX082824 8_MT9_JA1 PRJDB5600 leaf Oryza sativa Japonica Group Nihonmasari OsMYC2-knockdown JA-treated 16273773 0.9638 28067270 3/11/2019
235
+ DRX082814 3_MT2_mock1 PRJDB5600 leaf Oryza sativa Japonica Group Nihonmasari OsMYC2-knockdown control 15192518 0.9684 28067270 3/11/2019
236
+ DRX082816 4_MT9_mock1 PRJDB5600 leaf Oryza sativa Japonica Group Nihonmasari OsMYC2-knockdown control 15853930 0.9672 28067270 3/11/2019
237
+ DRX082820 6_VC_JA1 PRJDB5600 leaf Oryza sativa Japonica Group Nihonmasari vector control JA-treated 13889509 0.97 28067270 3/11/2019
238
+ DRX082812 2_VC_mock1 PRJDB5600 leaf Oryza sativa Japonica Group Nihonmasari vector control control 15558776 0.9673 28067270 3/11/2019
239
+ DRX082818 5_WT_JA1 PRJDB5600 leaf Oryza sativa Japonica Group Nihonmasari wild type JA-treated 15307708 0.9687 28067270 3/11/2019
240
+ DRX082810 1_WT_mock1 PRJDB5600 leaf Oryza sativa Japonica Group Nihonmasari wild type control 15579186 0.9699 28067270 3/11/2019
241
+ DRX084314 cd01 root 12h 2 PRJDB5677 root Oryza sativa Japonica Group -- -- 0.2uMCd 12h 3997999 0.822 -- 4/14/2019
242
+ DRX084316 cd01 root 1h 1 PRJDB5677 root Oryza sativa Japonica Group -- -- 0.2uMCd 1h 3169051 0.8367 -- 4/14/2019
243
+ DRX084319 cd01 root 24h 1 PRJDB5677 root Oryza sativa Japonica Group -- -- 0.2uMCd 24h 4347486 0.7973 -- 4/14/2019
244
+ DRX084331 cd1 root 12h 1 PRJDB5677 root Oryza sativa Japonica Group -- -- 1uMCd 12h 4363692 0.8581 -- 4/14/2019
245
+ DRX084334 cd1 root 1h 1 PRJDB5677 root Oryza sativa Japonica Group -- -- 1uMCd 1h 3963281 0.8712 -- 4/14/2019
246
+ DRX084337 cd1 root 24h 1 PRJDB5677 root Oryza sativa Japonica Group -- -- 1uMCd 24h 4316434 0.7805 -- 4/14/2019
247
+ DRX084348 cd50 root 12h 1 PRJDB5677 root Oryza sativa Japonica Group -- -- 50uMCd 12h 3906480 0.7709 -- 4/14/2019
248
+ DRX084352 cd50 root 1h 2 PRJDB5677 root Oryza sativa Japonica Group -- -- 50uMCd 1h 3998329 0.7616 -- 4/14/2019
249
+ DRX084311 aba root 24h 1 PRJDB5677 root Oryza sativa Japonica Group -- -- ABA 24h 4183208 0.752 -- 4/14/2019
250
+ DRX084368 control root 0h 2 PRJDB5677 root Oryza sativa Japonica Group -- -- control root 0h 3233450 0.8681 -- 4/14/2019
251
+ DRX084370 control root 12h 1 PRJDB5677 root Oryza sativa Japonica Group -- -- control root 12h 4903543 0.8388 -- 4/14/2019
252
+ DRX084373 control root 1h 1 PRJDB5677 root Oryza sativa Japonica Group -- -- control root 1h 2872487 0.8348 -- 4/14/2019
253
+ DRX084322 cd01 shoot 12h 1 PRJDB5677 shoot Oryza sativa Japonica Group -- -- 0.2uMCd 12h 4148735 0.9493 -- 4/14/2019
254
+ DRX084325 cd01 shoot 1h 1 PRJDB5677 shoot Oryza sativa Japonica Group -- -- 0.2uMCd 1h 4654598 0.9654 -- 4/14/2019
255
+ DRX084328 cd01 shoot 24h 1 PRJDB5677 shoot Oryza sativa Japonica Group -- -- 0.2uMCd 24h 3935783 0.944 -- 4/14/2019
256
+ DRX084340 cd1 shoot 12h 1 PRJDB5677 shoot Oryza sativa Japonica Group -- -- 1uMCd 12h 3747810 0.949 -- 4/14/2019
257
+ DRX084342 cd1 shoot 1h 1 PRJDB5677 shoot Oryza sativa Japonica Group -- -- 1uMCd 1h 3764004 0.9644 -- 4/14/2019
258
+ DRX084345 cd1 shoot 24h 1 PRJDB5677 shoot Oryza sativa Japonica Group -- -- 1uMCd 24h 3050660 0.9271 -- 4/14/2019
259
+ DRX084357 cd50 shoot 12h 1 PRJDB5677 shoot Oryza sativa Japonica Group -- -- 50uMCd 12h 4270399 0.9709 -- 4/14/2019
260
+ DRX084360 cd50 shoot 1h 1 PRJDB5677 shoot Oryza sativa Japonica Group -- -- 50uMCd 1h 4035566 0.9699 -- 4/14/2019
261
+ DRX084363 cd50 shoot 24h 2 PRJDB5677 shoot Oryza sativa Japonica Group -- -- 50uMCd 24h 3413463 0.9367 -- 4/14/2019
262
+ DRX084378 control shoot 0h 1 PRJDB5677 shoot Oryza sativa Japonica Group -- -- control shoot 0h 4195120 0.9655 -- 4/14/2019
263
+ DRX084381 control shoot 12h 1 PRJDB5677 shoot Oryza sativa Japonica Group -- -- control shoot 12h 3685517 0.9679 -- 4/14/2019
264
+ DRX084384 control shoot 1h 1 PRJDB5677 shoot Oryza sativa Japonica Group -- -- control shoot 1h 4065130 0.9631 -- 4/14/2019
265
+ DRX084387 control shoot 24h 1 PRJDB5677 shoot Oryza sativa Japonica Group -- -- control shoot 24h 3293616 0.9234 -- 4/14/2019
266
+ DRX138357 Cap_1 PRJDB7270 -- Oryza sativa Japonica Group OS suspension cell -- -- 21253901 0.8624 -- 9/11/2019
267
+ DRX138358 Capless_1 PRJDB7270 -- Oryza sativa Japonica Group OS suspension cell -- -- 59591258 0.9048 -- 9/11/2019
268
+ DRX157017 NN_zygote_1 PRJDB7949 zygote Oryza sativa Japonica Group Nipponbare -- -- 23477175 0.7213 30801122 3/19/2019
269
+ ERX2120653 E-MTAB-5941:Thaibonnet_10h_1 PRJEB22031 shoot Oryza sativa Japonica Group Thaibonnet -- 10h 10C 27798388 0.8871 29876699 10/14/2017
270
+ ERX2120647 E-MTAB-5941:Thaibonnet_00h_1 PRJEB22031 shoot Oryza sativa Japonica Group Thaibonnet -- control 27769812 0.8751 29876699 10/14/2017
271
+ ERX2120659 E-MTAB-5941:Volano_02h_1 PRJEB22031 shoot Oryza sativa Japonica Group Volano -- 2h 10C 40844086 0.8606 29876699 10/14/2017
272
+ ERX2120656 E-MTAB-5941:Volano_00h_1 PRJEB22031 shoot Oryza sativa Japonica Group Volano -- control 25426009 0.8668 29876699 10/14/2017
273
+ ERX3345453 Leaves 7 dpi Bvietnamiensis 1 PRJEB31936 leaf Oryza sativa Japonica Group Nipponbare -- 7dpi Bvietnamiensis 43862789 0.908 31608089 5/31/2019
274
+ ERX3345447 Leaves 7 dpi Pkururiensis 1 PRJEB31936 leaf Oryza sativa Japonica Group Nipponbare -- 7dpi Pkururiensis 46895520 0.874 31608089 5/31/2019
275
+ ERX3345450 Leaves Pphytofirmans 7 dpi 1 PRJEB31936 leaf Oryza sativa Japonica Group Nipponbare -- 7dpi Pphytofirmans 52174751 0.8936 31608089 5/31/2019
276
+ ERX3345263 Leaves 7 dpi Control 1 PRJEB31936 leaf Oryza sativa Japonica Group Nipponbare -- control 38533867 0.8707 31608089 5/31/2019
277
+ ERX3345462 Roots 7 dpi Bvietnamiensis 1 PRJEB31936 root Oryza sativa Japonica Group Nipponbare -- 7dpi Bvietnamiensis 51314965 0.8685 31608089 5/31/2019
278
+ ERX3345459 Roots 7 dpi Pkururiensis 1 PRJEB31936 root Oryza sativa Japonica Group Nipponbare -- 7dpi Pkururiensis 49275052 0.8739 31608089 5/31/2019
279
+ ERX3345465 Roots Pphytofirmans 7 dpi 1 PRJEB31936 root Oryza sativa Japonica Group Nipponbare -- 7dpi Pphytofirmans 40550424 0.8862 31608089 5/31/2019
280
+ ERX3345456 Roots 7 dpi Control 1 PRJEB31936 root Oryza sativa Japonica Group Nipponbare -- control 38522573 0.8769 31608089 5/31/2019
281
+ SRX103307 Callus_RNAseq_BiologicalReplicate1 PRJNA149055 callus Oryza sativa Japonica Group Nipponbare -- -- 13429779 0.9471 22080597 11/10/2011
282
+ SRX335915 root_1h -Pi_r1 PRJNA215013 root Oryza sativa Japonica Group Nipponbare -- 1h -Pi 32815710 0.7019 24249833 11/20/2013
283
+ SRX335945 root_21dd +Pi_r1 PRJNA215013 root Oryza sativa Japonica Group Nipponbare -- 21d +Pi 21644474 0.7341 24249833 11/20/2013
284
+ SRX335949 root_21dd -Pi_r2 PRJNA215013 root Oryza sativa Japonica Group Nipponbare -- 21d -Pi 28485833 0.7049 24249833 11/20/2013
285
+ SRX335919 root_21d+1h +Pi_r2 PRJNA215013 root Oryza sativa Japonica Group Nipponbare -- 21d+1h +Pi 26433489 0.7147 24249833 11/20/2013
286
+ SRX335955 root_24h -Pi_r2 PRJNA215013 root Oryza sativa Japonica Group Nipponbare -- 24h -Pi 25204865 0.7605 24249833 11/20/2013
287
+ SRX335961 root_3d -Pi_r2 PRJNA215013 root Oryza sativa Japonica Group Nipponbare -- 3d -Pi 27882930 0.7248 24249833 11/20/2013
288
+ SRX335963 root_6h +Pi_r1 PRJNA215013 root Oryza sativa Japonica Group Nipponbare -- 6h +Pi 35282035 0.7209 24249833 11/20/2013
289
+ SRX335967 root_6h -Pi_r2 PRJNA215013 root Oryza sativa Japonica Group Nipponbare -- 6h -Pi 31225411 0.7054 24249833 11/20/2013
290
+ SRX335970 root_7d +Pi_r2 PRJNA215013 root Oryza sativa Japonica Group Nipponbare -- 7d +Pi 29830545 0.7 24249833 11/20/2013
291
+ SRX335972 root_7d -Pi_r1 PRJNA215013 root Oryza sativa Japonica Group Nipponbare -- 7d -Pi 33571547 0.7273 24249833 11/20/2013
292
+ SRX736223 Rice_Control2h-Root-Rep1 PRJNA264298 root Oryza sativa Japonica Group Nipponbare -- control 54298737 0.9571 -- 8/10/2016
293
+ SRX736216 Rice_BA2h-Shoot-Rep1 PRJNA264298 shoot Oryza sativa Japonica Group Nipponbare -- 6-benzylaminopurine 2hrs 44108706 0.9637 -- 8/10/2016
294
+ SRX736226 Rice_Control2h-Shoot-Rep1 PRJNA264298 shoot Oryza sativa Japonica Group Nipponbare -- control 37643313 0.9693 -- 8/10/2016
295
+ SRX737140 GW6a-4.6 Rep1 PRJNA264408 shoot apical meristem Oryza sativa Japonica Group Nipponbare GW6a-4.6 introgression line -- 7751127 0.865 25535376 2/12/2015
296
+ SRX737143 OsglHAT1-OE Rep1 PRJNA264408 shoot apical meristem Oryza sativa Japonica Group Nipponbare OsglHAT1-OE -- 7908388 0.9357 25535376 2/12/2015
297
+ SRX737138 Nipponbare Rep1 PRJNA264408 shoot apical meristem Oryza sativa Japonica Group Nipponbare wild type -- 8094179 0.9396 25535376 2/12/2015
298
+ SRX844623 WT-Control-1 PRJNA272723 leaf Oryza sativa Japonica Group Nipponbare wild type control 14302686 0.9696 32963469 1/19/2015
299
+ SRX844621 WT-Drought-1 PRJNA272723 leaf Oryza sativa Japonica Group Nipponbare wild type drought 14664192 0.9603 32963469 1/19/2015
300
+ SRX844815 Oshsfa2e-WW-1 PRJNA272732 leaf Oryza sativa Japonica Group Nipponbare OsHSFA2e loss-of-function control 14038610 0.9694 32963469 1/19/2015
301
+ SRX844805 Osbhlh148-WW-1 PRJNA272733 leaf Oryza sativa Japonica Group Nipponbare OsbHLH148 loss-of-function control 10314448 0.9612 32963469 1/19/2015
302
+ SRX844803 Osbhlh148-DR-1 PRJNA272733 leaf Oryza sativa Japonica Group Nipponbare OsbHLH148 loss-of-function drought 7472493 0.9671 32963469 1/19/2015
303
+ SRX997484 PXO99A with BLS256 Tal11b replicate 1 PRJNA281369 leaf Oryza sativa Japonica Group Nipponbare -- PXO99A with BLS256 Tal11b 18174050 0.9628 26821568 5/1/2015
304
+ SRX997480 PXO99A with BLS256 Tal2a replicate 1 PRJNA281369 leaf Oryza sativa Japonica Group Nipponbare -- PXO99A with BLS256 Tal2a 15760262 0.9555 26821568 5/1/2015
305
+ SRX997482 PXO99A with dTal280 replicate 1 PRJNA281369 leaf Oryza sativa Japonica Group Nipponbare -- PXO99A with dTal280 29595813 0.944 26821568 5/1/2015
306
+ SRX1690265 ABA treated rep1 PRJNA317779 alurone Oryza sativa Japonica Group japonica -- ABA treated 43934073 0.9453 -- 4/11/2017
307
+ SRX1689996 control rep1 PRJNA317779 alurone Oryza sativa Japonica Group japonica -- control 31868774 0.9464 -- 4/11/2017
308
+ SRX1836773 highCu1 PRJNA325167 root Oryza sativa Japonica Group Nipponbare -- highCu stress 31928883 0.8401 -- 6/28/2016
309
+ SRX2545786 OsRootHair1 PRJNA338767 root hair Oryza sativa Japonica Group japonica wild type -- 54148348 0.8725 28487476 5/11/2017
310
+ SRX2448847 Control_Replicate 1 PRJNA359218 root Oryza sativa Japonica Group japonica -- control 20505069 0.8561 28491065 6/12/2017
311
+ SRX2448849 Drought_2 days_Replicate 1 PRJNA359218 root Oryza sativa Japonica Group japonica -- drought_2 days 24454395 0.8896 28491065 6/12/2017
312
+ SRX2448851 Drought_3 days_Replicate 1 PRJNA359218 root Oryza sativa Japonica Group japonica -- drought_3 days 20518718 0.8465 28491065 6/12/2017
313
+ SRX2795634 Drought OsbZIP46CA1 Overexpressing line -4 PRJNA386172 the second upper leaves Oryza sativa Japonica Group KY131 OsbZIP46CA1 OX drought stress 30360815 0.8484 28694815 8/11/2017
314
+ SRX2795635 Normal OsbZIP46CA1 Overexpressing line -4 PRJNA386172 the second upper leaves Oryza sativa Japonica Group KY131 OsbZIP46CA1 OX mock 31102852 0.8606 28694815 8/11/2017
315
+ SRX2795642 Drought OsbZIP46CA1 and SAPK6 Co-overexpressing line -125 PRJNA386172 the second upper leaves Oryza sativa Japonica Group KY131 OsbZIP46CA1 and SAPK6 Co-OX drought stress 36191535 0.8413 28694815 8/11/2017
316
+ SRX2795643 Normal OsbZIP46CA1 and SAPK6 Co-overexpressing line -125 PRJNA386172 the second upper leaves Oryza sativa Japonica Group KY131 OsbZIP46CA1 and SAPK6 Co-OX mock 35534927 0.8584 28694815 8/11/2017
317
+ SRX2795638 Drought SAPK6 Overexpressing line -19 PRJNA386172 the second upper leaves Oryza sativa Japonica Group KY131 SAPK6 OX drought stress 37052517 0.8498 28694815 8/11/2017
318
+ SRX2795639 Normal SAPK6 Overexpressing line -19 PRJNA386172 the second upper leaves Oryza sativa Japonica Group KY131 SAPK6 OX mock 35225129 0.8673 28694815 8/11/2017
319
+ SRX3085983 M202(Sub1) - dawn - rep 4 PRJNA397883 shoot Oryza sativa Japonica Group M202 Sub1 introgression line -- 94307981 0.7919 29094353 9/1/2017
320
+ SRX3085978 M202(Sub1) - midday - rep 6 PRJNA397883 shoot Oryza sativa Japonica Group M202 Sub1 introgression line -- 45256375 0.778 29094353 9/1/2017
321
+ SRX3085974 M202 - dusk - rep 6 PRJNA397883 shoot Oryza sativa Japonica Group M202 wild type -- 37299530 0.7202 29094353 9/1/2017
322
+ SRX3085975 M202 - midday - rep 6 PRJNA397883 shoot Oryza sativa Japonica Group M202 wild type -- 28677839 0.8023 29094353 9/1/2017
323
+ SRX3085987 M202 - midnight - rep 2 PRJNA397883 shoot Oryza sativa Japonica Group M202 wild type -- 56945776 0.8415 29094353 9/1/2017
324
+ SRX3219090 jmj705 replication1 PRJNA412312 2-3 mm shoot apex Oryza sativa Japonica Group HY jmj705 mutant -- 34688837 0.8843 29361035 1/23/2018
325
+ SRX3219086 HY replication1 PRJNA412312 2-3 mm shoot apex Oryza sativa Japonica Group HY wild type -- 35663466 0.859 29361035 1/23/2018
326
+ SRX3219088 wox11 replication1 PRJNA412312 2-3 mm shoot apex Oryza sativa Japonica Group HY wox11 mutant -- 34711024 0.8521 29361035 1/23/2018
327
+ SRX7082828 14 days whole plant after 24hr 300mM NaCl rep1 PRJNA413596 whole plant Oryza sativa Japonica Group japonica -- 24hr 300mM NaCl 22796840 0.8428 32044993 11/1/2019
328
+ SRX7082825 14 days whole plant control rep1 PRJNA413596 whole plant Oryza sativa Japonica Group japonica -- control 20966650 0.8592 32044993 11/1/2019
329
+ SRX3426390 ZH11-N1 PRJNA420056 shoot Oryza sativa Japonica Group ZH11 wild type control 43367449 0.9069 29312378 2/28/2018
330
+ SRX3426393 ZH11-D1 PRJNA420056 shoot Oryza sativa Japonica Group ZH11 wild type drought 41696678 0.8905 29312378 2/28/2018
331
+ SRX3510989 Nipponbare_MAI1_24hpi_rep1 PRJNA427491 leaf Oryza sativa Japonica Group Nipponbare -- Xanthomonas oryzae pv. Oryzae MAI1 inoculated 16383645 0.9697 29864161 4/2/2018
332
+ SRX3510992 Nipponbare_MOCK_24hpi_rep1 PRJNA427491 leaf Oryza sativa Japonica Group Nipponbare -- mock 10523934 0.9695 29864161 4/2/2018
333
+ SRX3513464 osvil2 2 mm panicle rep 1 PRJNA427581 2 mm panicle Oryza sativa Japonica Group Dongjin osvil2 mutant -- 24599140 0.9454 29467779 12/28/2017
334
+ SRX3513459 WT 2 mm panicle rep 1 PRJNA427581 2 mm panicle Oryza sativa Japonica Group Dongjin wild type -- 24663187 0.9464 29467779 12/28/2017
335
+ SRX3513467 osvil2 4 mm panicle rep 1 PRJNA427581 4 mm panicle Oryza sativa Japonica Group Dongjin osvil2 mutant -- 24592324 0.9435 29467779 12/28/2017
336
+ SRX3513461 WT 4 mm panicle rep 1 PRJNA427581 4 mm panicle Oryza sativa Japonica Group Dongjin wild type -- 24700171 0.9517 29467779 12/28/2017
337
+ SRX3532815 Nip 1 PRJNA428566 whole plant Oryza sativa Japonica Group Nipponbare -- -- 27272519 0.7204 30448535 12/26/2018
338
+ SRX3599256 Leaf_CK_rep1 PRJNA431539 leaf Oryza sativa Japonica Group Nipponbare -- control 16506604 0.8844 31111914 6/20/2019
339
+ SRX3599257 Leaf_Salt_rep1 PRJNA431539 leaf Oryza sativa Japonica Group Nipponbare -- salt stress 17652428 0.8924 31111914 6/20/2019
340
+ SRX3599258 Root_CK_rep1 PRJNA431539 root Oryza sativa Japonica Group Nipponbare -- control 17087684 0.8124 31111914 6/20/2019
341
+ SRX3599259 Root_Salt__rep1 PRJNA431539 root Oryza sativa Japonica Group Nipponbare -- salt stress 16170027 0.8325 31111914 6/20/2019
342
+ SRX3664166 gs9-3 PRJNA433301 young panicle Oryza sativa Japonica Group Nipponbare gs9 mutant -- 41618152 0.8943 -- 2/8/2018
343
+ SRX3664168 NPB-3 PRJNA433301 young panicle Oryza sativa Japonica Group Nipponbare wild type -- 46375111 0.895 -- 2/8/2018
344
+ SRX3754681 starvation_RNAseq_rep1 PRJNA436566 seedling Oryza sativa Japonica Group Dongjin -- continuous darkness 48hrs 24457804 0.8432 30253806 9/10/2018
345
+ SRX3754679 control_RNAseq_rep1 PRJNA436566 seedling Oryza sativa Japonica Group Dongjin -- control 24119971 0.807 30253806 9/10/2018
346
+ SRX3754683 submergence_RNAseq_rep1 PRJNA436566 seedling Oryza sativa Japonica Group Dongjin -- submergence 6hrs 23120931 0.8316 30253806 9/10/2018
347
+ SRX3773932 WT_8h_2 PRJNA437217 seed Oryza sativa Japonica Group japonica wild type -- 23281143 0.8725 -- 3/8/2018
348
+ SRX3861943 SDG725Ri_RNAseq_rep1 PRJNA447922 shoot Oryza sativa Japonica Group -- SDG725Ri mutant -- 65952601 0.7997 -- 3/29/2018
349
+ SRX3861945 WT_RNAseq_rep1 PRJNA447922 shoot Oryza sativa Japonica Group -- wild type -- 30922819 0.7764 -- 3/29/2018
350
+ SRX4321407 CP_PROG1_r1 PRJNA478448 Tiller bases Oryza sativa Japonica Group -- transgenic plants of PROG1 -- 30592784 0.8824 30297755 7/5/2018
351
+ SRX4321413 CP_ZnF5_r1 PRJNA478448 Tiller bases Oryza sativa Japonica Group -- transgenic plants of ZnF5 -- 26052644 0.8884 30297755 7/5/2018
352
+ SRX4321416 CP_ZnF7_r1 PRJNA478448 Tiller bases Oryza sativa Japonica Group -- transgenic plants of ZnF7 -- 21788874 0.8855 30297755 7/5/2018
353
+ SRX4321422 CP_ZnF8_r1 PRJNA478448 Tiller bases Oryza sativa Japonica Group -- transgenic plants of ZnF8 -- 24464260 0.8636 30297755 7/5/2018
354
+ SRX4321410 CP_PROG1_control_r1 PRJNA478448 Tiller bases Oryza sativa Japonica Group -- wild type -- 22356252 0.8818 30297755 7/5/2018
355
+ SRX4321419 CP_ZnF5_ZnF7_control_r1 PRJNA478448 Tiller bases Oryza sativa Japonica Group -- wild type -- 22591301 0.8803 30297755 7/5/2018
356
+ SRX4321425 CP_ZnF8_control_r1 PRJNA478448 Tiller bases Oryza sativa Japonica Group -- wild type -- 32342783 0.8676 30297755 7/5/2018
357
+ SRX4881237 Leaf_2 PRJNA482217 flag leaf Oryza sativa Japonica Group Nipponbare -- -- 114040349 0.926 31857423 11/10/2019
358
+ SRX4881243 Flower_1 PRJNA482217 flower Oryza sativa Japonica Group Nipponbare -- -- 135776272 0.8986 31857423 11/10/2019
359
+ SRX4881233 Root_1 PRJNA482217 root Oryza sativa Japonica Group Nipponbare -- -- 123792466 0.903 31857423 11/10/2019
360
+ SRX4807023 Seed_1 PRJNA482217 seed Oryza sativa Japonica Group Nipponbare -- -- 73441791 0.7802 31857423 11/3/2019
361
+ SRX4881242 Seedling_3 PRJNA482217 seedling Oryza sativa Japonica Group Nipponbare -- -- 93823846 0.8427 31857423 11/10/2019
362
+ SRX4881240 Stem_2 PRJNA482217 stem Oryza sativa Japonica Group Nipponbare -- -- 100751979 0.8925 31857423 11/10/2019
363
+ SRX4496310 Rice heat-stressed rep2 PRJNA483853 seedling Oryza sativa Japonica Group Nipponbare -- 44°C 3 days 22439711 0.9254 -- 10/19/2018
364
+ SRX4496312 Rice non-stressed rep2 PRJNA483853 seedling Oryza sativa Japonica Group Nipponbare -- control 20961112 0.8182 -- 10/19/2018
365
+ SRX4890362 WT (NIP) rep1 PRJNA496507 Leaf Oryza sativa Japonica Group Nipponbare wild type -- 26213322 0.8528 30448535 12/26/2018
366
+ SRX4935323 OsKO-1 PRJNA498361 seedling Oryza sativa Japonica Group Nipponbare KO control 21328445 0.7953 32504260 9/23/2019
367
+ SRX4935322 OsKOS-2 PRJNA498361 seedling Oryza sativa Japonica Group Nipponbare KO salt stress 36010224 0.8507 32504260 9/23/2019
368
+ SRX4935324 OsWT-1 PRJNA498361 seedling Oryza sativa Japonica Group Nipponbare wild type control 44083230 0.8456 32504260 9/23/2019
369
+ SRX4935320 OsWTS-3 PRJNA498361 seedling Oryza sativa Japonica Group Nipponbare wild type salt stress 19762090 0.8466 32504260 9/23/2019
370
+ SRX4963556 WT-2 PRJNA503271 endosperm Oryza sativa Japonica Group Nipponbare wild type -- 23954153 0.8428 30628157 11/30/2019
371
+ SRX5235070 Nip RNA seq replicate 1 PRJNA514100 leaf Oryza sativa Japonica Group Nipponbare -- -- 40019704 0.9592 30919978 7/30/2019
372
+ SRX5320604 osj_PBM_1 PRJNA518559 panicle Oryza sativa Japonica Group Nipponbare -- -- 41178614 0.7878 31346594 7/28/2019
373
+ SRX5406940 suf4Ri-1-1 PRJNA523500 seedling Oryza sativa Japonica Group Nipponbare suf4Ri -- 13975072 0.7377 31278262 2/22/2019
374
+ SRX5574791 salt-0.5 h-1 PRJNA528350 primary root Oryza sativa Japonica Group Nipponbare -- salt 0.5 h 26091541 0.9291 30924949 3/26/2019
375
+ SRX5574795 salt-3 h-1 PRJNA528350 primary root Oryza sativa Japonica Group Nipponbare -- salt 3 h 23337237 0.93 30924949 3/26/2019
376
+ SRX5636330 Nipponbare_Drought stress24h_1 PRJNA530826 stem and leaf Oryza sativa Japonica Group Nipponbare -- Drought stress24h 25438543 0.9038 31544012 7/10/2019
377
+ SRX5636341 Nipponbare_Drought stress36h_1 PRJNA530826 stem and leaf Oryza sativa Japonica Group Nipponbare -- Drought stress36h 28951944 0.9041 31544012 7/10/2019
378
+ SRX5636370 Nipponbare_Drought stress48h_1 PRJNA530826 stem and leaf Oryza sativa Japonica Group Nipponbare -- Drought stress48h 32369355 0.9145 31544012 7/10/2019
379
+ SRX5636348 Nipponbare_Heat stress36h_1 PRJNA530826 stem and leaf Oryza sativa Japonica Group Nipponbare -- Heat stress36h 23653652 0.9461 31544012 7/10/2019
380
+ SRX5636355 Nipponbare_Heat stress48h_3 PRJNA530826 stem and leaf Oryza sativa Japonica Group Nipponbare -- Heat stress48h 17894008 0.927 31544012 7/10/2019
381
+ SRX5636343 Nipponbare_Heat stress6h_1 PRJNA530826 stem and leaf Oryza sativa Japonica Group Nipponbare -- Heat stress6h 14991564 0.9279 31544012 7/10/2019
382
+ SRX5636385 Nipponbare_Salt stress 24h_2 PRJNA530826 stem and leaf Oryza sativa Japonica Group Nipponbare -- Salt stress 24h 33521814 0.9101 31544012 7/10/2019
383
+ SRX5636352 Nipponbare_Salt stress1h_3 PRJNA530826 stem and leaf Oryza sativa Japonica Group Nipponbare -- Salt stress1h 40912487 0.9208 31544012 7/10/2019
384
+ SRX5636360 Nipponbare_Salt stress36h_2 PRJNA530826 stem and leaf Oryza sativa Japonica Group Nipponbare -- Salt stress36h 30948124 0.9233 31544012 7/10/2019
385
+ SRX5636350 Nipponbare_Salt stress3h_2 PRJNA530826 stem and leaf Oryza sativa Japonica Group Nipponbare -- Salt stress3h 30650689 0.9286 31544012 7/10/2019
386
+ SRX5636380 Nipponbare_Control-3 PRJNA530826 stem and leaf Oryza sativa Japonica Group Nipponbare -- control 24971943 0.9529 31544012 7/10/2019
387
+ SRX5727255 O2428-LO2d-3 PRJNA534011 whole germinating seeds Oryza sativa Japonica Group japonica -- room temperature anaerobic 2d 14157253 0.8974 31072298 4/23/2019
388
+ SRX5727253 O2428-LO3d-2 PRJNA534011 whole germinating seeds Oryza sativa Japonica Group japonica -- room temperature anaerobic 3d 12350958 0.889 31072298 4/23/2019
389
+ SRX5727251 O2428-LO4d-1 PRJNA534011 whole germinating seeds Oryza sativa Japonica Group japonica -- room temperature anaerobic 4d 14056799 0.8833 31072298 4/23/2019
390
+ SRX5733523 RNA_T1-15_rep2 PRJNA535389 Leaf Oryza sativa Japonica Group Nipponbare OsNRPD1 RNAi -- 49724958 0.9374 -- 4/25/2019
391
+ SRX5733525 RNA_WT_rep3 PRJNA535389 Leaf Oryza sativa Japonica Group Nipponbare wild type -- 51027561 0.932 -- 4/25/2019
392
+ SRX5824089 ES_OEZ_r1 PRJNA542632 early seedlings Oryza sativa Japonica Group Japonica Group OsLTPL159IL112 overexpression line cold treatment 24735706 0.9074 31469486 10/31/2019
393
+ SRX5824086 ES_ZH17_r1 PRJNA542632 early seedlings Oryza sativa Japonica Group Japonica Group wild type cold treatment 19223486 0.8995 31469486 10/31/2019
394
+ SRX5880876 WT_0h_3 PRJNA543951 seed Oryza sativa Japonica Group Nipponbare wild type* -- 37570682 0.888 -- 5/22/2019
395
+ SRX5891278 WT_0h_1 PRJNA544406 seed Oryza sativa Japonica Group Nipponbare wild type* -- 34965196 0.8837 -- 5/24/2019
396
+ SRX5891281 WT_8h_1 PRJNA544406 seed Oryza sativa Japonica Group Nipponbare wild type* -- 21979310 0.884 -- 5/24/2019
397
+ SRX6423933 D53m-OE-2 PRJNA553596 aerial part Oryza sativa Japonica Group Nipponbare D53 over-expression under dark growth 37668922 0.9168 32665307 9/22/2019
398
+ SRX6423921 OsSMAX1m-OE-2 PRJNA553596 aerial part Oryza sativa Japonica Group Nipponbare OsSMAX1 over-expression under dark growth 43687950 0.9142 32665307 9/22/2019
399
+ SRX6423940 d14/d14l-1 PRJNA553596 aerial part Oryza sativa Japonica Group Nipponbare the double mutant D14L and D14 under dark growth 41173035 0.9114 32665307 9/22/2019
400
+ SRX6423930 OsSMAX1-KO/d14-1 PRJNA553596 aerial part Oryza sativa Japonica Group Nipponbare the double mutant OsSMAX1 and D14 under dark growth 49987493 0.9085 32665307 9/22/2019
401
+ SRX6423925 OsSMAX1-KO/d3-1 PRJNA553596 aerial part Oryza sativa Japonica Group Nipponbare the double mutant OsSMAX1 and D3 under dark growth 44426849 0.9129 32665307 9/22/2019
402
+ SRX6423929 d14-3 PRJNA553596 aerial part Oryza sativa Japonica Group Nipponbare the mutant D14 under dark growth 44235112 0.9168 32665307 9/22/2019
403
+ SRX6423939 d14l-3 PRJNA553596 aerial part Oryza sativa Japonica Group Nipponbare the mutant D14L under dark growth 43999889 0.9172 32665307 9/22/2019
404
+ SRX6423926 d3-3 PRJNA553596 aerial part Oryza sativa Japonica Group Nipponbare the mutant D3 under dark growth 56834028 0.9161 32665307 9/22/2019
405
+ SRX6423935 OsSMAX1-KO-3 PRJNA553596 aerial part Oryza sativa Japonica Group Nipponbare the mutant OsSMAX1 under dark growth 49697817 0.9176 32665307 9/22/2019
406
+ SRX6423919 WT-3 PRJNA553596 aerial part Oryza sativa Japonica Group Nipponbare wild type under dark growth 48177532 0.9152 32665307 9/22/2019
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for_supp/oryza_masked_regions.bed ADDED
The diff for this file is too large to render. See raw diff
 
for_supp/oryza_masked_regions.sorted.bed ADDED
The diff for this file is too large to render. See raw diff
 
for_supp/rice_datasets.csv ADDED
The diff for this file is too large to render. See raw diff
 
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1996
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2510
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2511
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2512
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2513
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2514
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2515
+ Chr11 19154700 19164700
2516
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2517
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2518
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2519
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2520
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2521
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2522
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2523
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2524
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2525
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2526
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2527
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2528
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2529
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2530
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2531
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2532
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2533
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2534
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2535
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2536
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2537
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2538
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2539
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2540
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2541
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2542
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2543
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2544
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2545
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2546
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2547
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2548
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2549
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2550
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2551
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2552
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2553
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2554
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2555
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2556
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2557
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2558
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2559
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2560
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2561
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2562
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2563
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2564
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2565
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2566
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2567
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2568
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2569
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2570
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2571
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2572
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2573
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2574
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2575
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2576
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2577
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2578
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2579
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2580
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2581
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2582
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2583
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2584
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2585
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2586
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2587
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2588
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2589
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2590
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2591
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2592
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2593
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2594
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2595
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2596
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2597
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2598
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2599
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2600
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2601
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2602
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2603
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2604
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2605
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2606
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2607
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2608
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2609
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2610
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2611
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2612
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2613
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2614
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2615
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2616
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2617
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2618
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2619
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2620
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2621
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2622
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2623
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2624
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2625
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2626
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2627
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2628
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2629
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2630
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2631
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2632
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2633
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2634
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2635
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2636
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2637
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2638
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2639
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2640
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2641
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2642
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2643
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2644
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2645
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2646
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2647
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2648
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2649
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2650
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2651
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2652
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2653
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2654
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2655
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2656
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2657
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2658
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2659
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2660
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2661
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2662
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2663
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2664
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2665
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2666
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2667
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2668
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2669
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2670
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2671
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2672
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2673
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2674
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2675
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2676
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2677
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2678
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2679
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2680
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2681
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2682
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2683
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2684
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2685
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2686
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2687
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2688
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2689
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2690
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2691
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2692
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2693
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2694
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2695
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2696
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2697
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2698
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2699
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2700
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2701
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2702
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2703
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2704
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2705
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2706
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2707
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2708
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2709
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2710
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2711
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2712
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2713
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2714
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2715
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2717
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2718
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2719
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2720
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2722
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2723
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2725
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2726
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2727
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2728
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2730
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2733
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2744
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2745
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2747
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2750
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2751
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2753
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2754
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2755
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2756
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2765
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2772
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2774
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2775
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2776
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2777
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2778
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2779
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2780
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2783
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2784
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2788
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2790
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2791
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2792
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2793
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2794
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2795
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2796
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2797
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2798
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2799
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2800
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2801
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2802
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2803
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2804
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2805
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2806
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2807
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2808
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2809
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2810
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2811
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2818
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2819
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2820
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2821
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2822
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2823
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2826
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2828
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2829
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2830
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2831
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2832
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2833
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2834
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2835
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2836
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2837
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2838
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2839
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2840
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2841
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2842
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2843
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2844
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2845
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2846
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2847
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2848
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2849
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2850
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2851
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2852
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2853
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2854
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2855
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2856
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2857
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2858
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2859
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2860
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2861
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2862
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2863
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2864
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2865
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2866
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2868
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2869
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2870
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2871
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2872
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2873
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2874
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2875
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2876
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2877
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2878
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2879
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2880
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2881
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2882
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2883
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2884
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2885
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2886
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2887
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2888
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2889
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2890
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2891
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2892
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2893
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2894
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2895
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2896
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2897
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2898
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2899
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2900
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2901
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2902
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2903
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2904
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2905
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2906
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2907
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2908
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2909
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2910
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2911
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2912
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2913
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2914
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2915
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2916
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2917
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2918
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2919
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2920
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2921
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2922
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2923
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2924
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2925
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2926
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2927
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2928
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2929
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2930
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2931
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2932
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2933
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2934
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2935
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2936
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2937
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2938
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2939
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2940
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2941
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2942
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2943
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2944
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2945
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2946
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2947
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2948
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2949
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2950
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2951
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2952
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2953
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2954
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2955
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2956
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2957
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2958
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2959
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2960
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2961
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2962
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2963
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2964
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2965
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2966
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2967
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2968
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2969
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2970
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2971
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2972
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2973
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2974
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2975
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2976
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2977
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2978
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2979
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2980
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2981
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2982
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2983
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2984
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2985
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2986
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2987
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2988
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2989
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2990
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2991
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2992
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2993
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2994
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2995
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2996
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2997
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2998
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2999
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3000
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3001
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3002
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3003
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3004
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3005
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3006
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3007
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3008
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3009
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3010
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3011
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3012
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3014
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3015
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3016
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3017
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3018
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3019
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3020
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3021
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3022
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3023
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3024
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3025
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3026
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3027
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3028
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3029
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3030
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3031
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3032
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3033
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3034
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3035
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3036
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3037
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3038
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3039
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3040
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3041
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3042
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3044
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3045
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3046
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3047
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3048
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3060
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3062
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3064
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3066
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3067
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3068
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3069
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3070
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3071
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3072
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3074
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3076
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3078
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3080
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3090
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3099
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3110
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3141
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3214
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3267
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3290
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