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import os
import sys
import glob
import numpy as np
import pandas as pd
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt

sys.stdout.reconfigure(encoding='utf-8')

BASE_DIR = r"c:\Users\ahmed\.gemini\antigravity\scratch\Allignments\PHONEME_TIMINGS_EACH_RECITER"

def sanitize_filename(name):
    replacements = {
        ':': '_colon_',
        '/': '_slash_',
        '\\': '_bslash_',
        '*': '_star_',
        '?': '_qmark_',
        '"': '_quote_',
        '<': '_lt_',
        '>': '_gt_',
        '|': '_pipe_'
    }
    s = str(name)
    for char, rep in replacements.items():
        s = s.replace(char, rep)
    return s

def main():
    print("=" * 60)
    print("Updating Phase 3 with Custom Rules for Long Vowels (a:, i:, u:)")
    print("=" * 60)
    
    pooled_csv_path = os.path.join(BASE_DIR, "all_reciters_phase3_pooled_tokens.csv")
    master_df = pd.read_csv(pooled_csv_path)
    
    unique_phones = sorted(master_df['phone'].dropna().unique())
    summary_rows = []
    plots_dir = os.path.join(BASE_DIR, "Phase3_Unified_Plots")
    os.makedirs(plots_dir, exist_ok=True)
    
    for phone in unique_phones:
        phone_str = str(phone)
        sub = master_df[master_df['phone'] == phone]
        t_ms = sub['duration_norm_ms'].values
        n_samples = len(t_ms)
        
        if n_samples == 0:
            continue
            
        p1_ms = np.percentile(t_ms, 1.0)
        p2_5_ms = np.percentile(t_ms, 2.5)
        q1_ms = np.percentile(t_ms, 25.0)
        med_ms = np.median(t_ms)
        q3_ms = np.percentile(t_ms, 75.0)
        p97_5_ms = np.percentile(t_ms, 97.5)
        p99_ms = np.percentile(t_ms, 99.0)
        mean_ms = np.mean(t_ms)
        std_ms = np.std(t_ms)
        raw_min_ms = np.min(t_ms)
        raw_max_ms = np.max(t_ms)
        
        # APPLY CUSTOM USER RULES (Option A):
        # 1. For a: no upper outlier filtering (use raw_max_ms)
        if phone_str == 'a:':
            p99_ms = raw_max_ms
            p97_5_ms = raw_max_ms
        # 2. For i: stop at P90 (3726.6 ms)
        elif phone_str == 'i:':
            p99_ms = np.percentile(t_ms, 90.0)
            p97_5_ms = np.percentile(t_ms, 88.0)
        # 3. For u: stop at P97 (3828.0 ms)
        elif phone_str == 'u:':
            p99_ms = np.percentile(t_ms, 97.0)
            p97_5_ms = np.percentile(t_ms, 95.0)
        p1_sec = p1_ms / 1000.0
        p2_5_sec = p2_5_ms / 1000.0
        q1_sec = q1_ms / 1000.0
        med_sec = med_ms / 1000.0
        q3_sec = q3_ms / 1000.0
        p97_5_sec = p97_5_ms / 1000.0
        p99_sec = p99_ms / 1000.0
        mean_sec = mean_ms / 1000.0
        std_sec = std_ms / 1000.0
        raw_min_sec = raw_min_ms / 1000.0
        raw_max_sec = raw_max_ms / 1000.0
        
        summary_rows.append({
            'phone': phone_str,
            'total_tokens': n_samples,
            'min_valid_p1_ms': round(p1_ms, 1),
            'min_conservative_p2_5_ms': round(p2_5_ms, 1),
            'q1_ms': round(q1_ms, 1),
            'median_ms': round(med_ms, 1),
            'mean_ms': round(mean_ms, 1),
            'std_ms': round(std_ms, 1),
            'q3_ms': round(q3_ms, 1),
            'max_conservative_p97_5_ms': round(p97_5_ms, 1),
            'max_valid_p99_ms': round(p99_ms, 1),
            'raw_min_ms': round(raw_min_ms, 1),
            'raw_max_ms': round(raw_max_ms, 1),
            'min_valid_p1_sec': round(p1_sec, 3),
            'min_conservative_p2_5_sec': round(p2_5_sec, 3),
            'q1_sec': round(q1_sec, 3),
            'median_sec': round(med_sec, 3),
            'mean_sec': round(mean_sec, 3),
            'std_sec': round(std_sec, 3),
            'q3_sec': round(q3_sec, 3),
            'max_conservative_p97_5_sec': round(p97_5_sec, 3),
            'max_valid_p99_sec': round(p99_sec, 3),
            'raw_min_sec': round(raw_min_sec, 3),
            'raw_max_sec': round(raw_max_sec, 3)
        })
        
        fig, ax = plt.subplots(figsize=(9, 5.5), dpi=120)
        plot_upper_limit = p99_ms * 1.2 if p99_ms > 0 else raw_max_ms
        t_ms_clipped = t_ms[t_ms <= plot_upper_limit]
        
        counts, bins, patches = ax.hist(
            t_ms_clipped, 
            bins=40, 
            color='#1d3557', 
            edgecolor='white', 
            alpha=0.75, 
            label=f'Unified Tokens (N={n_samples:,})'
        )
        
        ax.axvline(med_ms, color='#e63946', linestyle='-', linewidth=2.2, label=f'Median: {med_ms:.1f} ms')
        ax.axvline(mean_ms, color='#9b5de5', linestyle='--', linewidth=1.5, label=f'Mean: {mean_ms:.1f} ms')
        ax.axvline(p1_ms, color='#2a9d8f', linestyle='-.', linewidth=1.8, label=f'Min Valid (P1): {p1_ms:.1f} ms')
        ax.axvline(p99_ms, color='#e76f51', linestyle='-.', linewidth=1.8, label=f'Max Valid: {p99_ms:.1f} ms')
        ax.axvline(q1_ms, color='#457b9d', linestyle=':', linewidth=1.4, label=f'Q1 (P25): {q1_ms:.1f} ms')
        ax.axvline(q3_ms, color='#457b9d', linestyle=':', linewidth=1.4, label=f'Q3 (P75): {q3_ms:.1f} ms')
        
        ax.axvspan(q1_ms, q3_ms, color='#a8dadc', alpha=0.25, label='Core Tier [Q1 - Q3]')
        
        ax.set_title(f"Phase 3: Unified Duration Distribution for Phoneme [{phone_str}]\n(Pooled Across All 7 Imams | N = {n_samples:,} samples)", 
                     fontsize=11, fontweight='bold', pad=10)
        ax.set_xlabel("Normalized Duration (ms)", fontsize=10, fontweight='bold')
        ax.set_ylabel("Token Count", fontsize=10, fontweight='bold')
        ax.grid(axis='y', alpha=0.3, linestyle='--')
        
        info_text = (
            f"Phoneme: [{phone_str}]\n"
            f"Samples: {n_samples:,}\n"
            f"Valid Min: {p1_ms:.1f} ms\n"
            f"Median: {med_ms:.1f} ms\n"
            f"Valid Max: {p99_ms:.1f} ms\n"
            f"Mean +/- Std: {mean_ms:.1f} +/- {std_ms:.1f} ms"
        )
        ax.text(0.97, 0.95, info_text, transform=ax.transAxes, fontsize=8.5,
                verticalalignment='top', horizontalalignment='right',
                bbox=dict(boxstyle='round,pad=0.5', facecolor='whitesmoke', edgecolor='#adb5bd', alpha=0.9))
        
        ax.legend(loc='upper left', fontsize=8, framealpha=0.9)
        fig.tight_layout()
        safe_name = sanitize_filename(phone_str)
        plot_out = os.path.join(plots_dir, f"{safe_name}_unified_histogram.png")
        if os.path.exists(plot_out):
            try:
                os.remove(plot_out)
            except Exception:
                pass
        try:
            fig.savefig(plot_out)
        except Exception as e:
            import time
            time.sleep(0.1)
            fig.savefig(plot_out)
        plt.close(fig)
        
    summary_df = pd.DataFrame(summary_rows)
    master_csv_path = os.path.join(BASE_DIR, "phase3_unified_phoneme_timings.csv")
    summary_df.to_csv(master_csv_path, index=False, encoding='utf-8-sig')
    print(f"\nPhase 3 Master Timing Table updated: {master_csv_path}")
    print("Done!")

if __name__ == '__main__':
    main()