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import torch import torch.nn as nn from einops import rearrange from utils.vit import ViT class EncoderBottleneck(nn.Module): def __init__(self, in_channels, out_channels, stride=1, base_width=64): super().__init__() self.downsample = nn.Sequential( nn.Conv2d(in_channels, out_channel...
#encoding=utf-8 import argparse import torch import time import json import numpy as np import math import random from torch.autograd import Variable import torch.nn.functional as F from config import flags seed = flags.seed np.random.seed(seed) random.seed(seed) torch.manual_seed(seed) torch.cuda.manual_seed(seed) ...
import asyncio import concurrent.futures import functools from http import HTTPStatus as hs import json import typing from conducto.shared import types as t, request_utils class UserInputValidation(Exception): # Any exception derived from this should be given a message that is # understandable to an end-user...
import numpy as np import cv2 import imutils import time from matplotlib import pyplot as plt def load_im(fn): return(cv2.cvtColor(cv2.imread(fn,cv2.IMREAD_UNCHANGED),cv2.COLOR_BGR2RGB)) def rot_border(angle, inxy): xmax = np.max(inxy[:,0]) xmin = np.min(inxy[:,0]) ymax = np.max(inxy[:,1]) ymin = np.mi...
#!/usr/bin/env python from __future__ import division import txros from twisted.internet import defer from mil_misc_tools import text_effects from sub8 import SonarObjects from mil_ros_tools import rosmsg_to_numpy from scipy.spatial import distance import numpy as np fprint = text_effects.FprintFactory( title=...
import abc from dataclasses import dataclass, field from typing import Optional, Union import sklearn import sklearn.cross_decomposition import sklearn.ensemble import sklearn.linear_model import sklearn.svm import xgboost from apischema import schema from sklearn.base import BaseEstimator from typing_extensions impor...
import numpy as np from ipso_phen.ipapi.base.ip_abstract import BaseImageProcessor from ipso_phen.ipapi.tools.csv_writer import AbstractCsvWriter _01a_EXPERIMENT = "01as_btitom_1810".lower() class ImageCsvWriter(AbstractCsvWriter): def __init__(self): super().__init__() self.data_list = dict.fro...
# Level 3 program for driving SCUTTLE and handling other tasks in parallel # IMPORT EXTERNAL ITEMS import time import numpy as np # for handling matrices import threading # only used for threading functions import math # IMPORT INTERNAL ITEMS import L2_speed_control as sc # closed loop control. Import speed_control f...
import dataclasses from datetime import datetime from typing import List, Optional, Type from numpy.random import default_rng from rest_framework.exceptions import ValidationError from ee.clickhouse.queries.trends.clickhouse_trends import ClickhouseTrends from posthog.constants import TRENDS_CUMULATIVE from posthog.m...
import os from copy import deepcopy import numpy as np from sklearn.decomposition import PCA from skimage.transform import AffineTransform from matplotlib import pyplot as plt import matplotlib.image as mpimg #################################################### # image transformation method # Credit: https://github.co...
# -*- coding: utf-8; indent-tabs-mode: nil; python-indent: 2 -*- # # Copyright (C) 2013-2019 <NAME> # # This file is part of WaterOnMars (https://github.com/tibonihoo/wateronmars) # # WaterOnMars is free software: you can redistribute it and/or modify # it under the terms of the GNU Affero General Public License as pu...
import shutil import json import os import requests import pyperclip import nbtlib import urllib.request import sys import zipfile def serverSetup(createdServerName, selectedVersion): versions = requests.get('http://launchermeta.mojang.com/mc/game/version_manifest.json') versionsJSON = json.loads(v...
import asyncio from urllib import parse from pyppeteer import launch import pyppeteer from colorama import * import sys import string import random from urllib import parse import argparse import time init() GREEN = Fore.GREEN RED = Fore.RED RESET = Fore.RESET BLUE = Fore.BLUE YELLOW = Fore.YELLOW MAGENT...
""" An abstraction class for OpenGL image buffers For simplicity, we would like to treat an image as a (1D) list of tuples. In reality, it is a little more complicated than that, because OpenGL expects the data in a very compact format. This data structure abstracts all of this so we can pretend otherwise. You DO NOT...
import datetime import copy import json import pickle from pathlib import Path from telemetry_f1_2021.packets import HEADER_FIELD_TO_PACKET_TYPE from telemetry_f1_2021.packets import PacketSessionData, PacketMotionData, PacketLapData, PacketEventData, PacketParticipantsData, PacketCarDamageData from telemetry_f1_2021....
import sys from py4j.java_gateway import JavaGateway, GatewayParameters, CallbackServerParameters, get_field import time import subprocess class Environment(): actions = ["↖", "↑", "↗", "←", "→", "↙", "↓", "↘", "A", "B", "C", "_"] # Create the connection to the server def __init__(self): self....
# coding: utf-8 from Parser import Parser from operator import mul, add import typing # class Number(Parser): # tokens = ( # "UNIT", # "PLUS", # "TIMES", # "ZERO" # ) # # literals = ('(', ')', '+', '*') # # # t_PLUS = r'\+' # # t_TIMES = r'\*' # ...
# 21datalabplugin #import numpy as np import dates import pandas as pd import copy import numpy from system import __functioncontrolfolder import requests import json import time # use a list to avoid loading of this in the model mycontrol = [copy.deepcopy(__functioncontrolfolder)] mycontrol[0]["children"][-1]["val...
import logging import requests from django.conf import settings from django.utils import timezone from data_ocean.converter import Converter, BulkCreateManager from data_ocean.downloader import Downloader from data_ocean.models import Register from data_ocean.utils import clean_name, change_to_full_name from location...
#!/usr/bin/env python from __future__ import print_function import os import sys import re import gzip import bz2 import argparse import shutil import logging import itertools import collections import functools from subprocess import Popen, PIPE from distutils.spawn import find_executable # 3rd party from Bio.SeqUtils...
#!/usr/bin/env python from pytlscanner import resultsFromCache from pytlscanner import sslyze_scan from pymongo import MongoClient import time import argparse from pprint import pprint from dataclasses import asdict import json import sslyze from sslyze import ScanCommand import requests import copy from datetime imp...
#!/usr/bin/env python3 import argparse from pathlib import Path import numpy as np from matplotlib import pyplot as plt from mpl_toolkits.axes_grid1 import make_axes_locatable from numpy.lib.npyio import save from tqdm.auto import tqdm import dns cmap = "coolwarm" def main(): parser = argparse.ArgumentParser(...
import torch import torch.fft from torch import nn # it calculates the biased or unbiased autocorrelation function # it is simply an implementation of the ACF in terms of pyTorch transformations # note that there's no parameter to learn here class AutocorrSeq(nn.Module): def __init__(self, n_lags, unbiased=False)...
#!@PYTHON@ -tt ##### ## ## The Following Agent Has Been Tested On: ## ## Model Modle/Firmware ## +--------------------+---------------------------+ ## (1) Main application CB2000/A0300-E-6617 ## ##### import sys, re import atexit sys.path.append("@FENCEAGENTSLIBDIR@") from fencing import * #BEGIN_...
import torch import torch.nn as nn import torch.nn.functional as F from torch.autograd import Variable from collections import OrderedDict from torch.nn import init class LinearBottleneck(nn.Module): def __init__(self, inplanes, outplanes, stride=1, t=6, activation=nn.ReLU6): super(LinearBottleneck, self)...
######################################################################################### # Name: <NAME> # Student ID: 64180008 # Department: Computer Engineering # # Assignment ID: A6 ######################################################################################### ###################...
import click import pyfiglet from os import name, system from bookcut import __version__ from bookcut.mirror_checker import main as mirror_checker, settingParser from bookcut.book import libgen_book_find, book_searching_in_repos from bookcut.organise import main_organiser from bookcut.search import choose_a_book from b...
# -*- coding: utf-8 -*- #!/usr/bin/env python # Helper function for output on facebook messages archive. # LICENSE INFORMATION HEADER __author__ = "<NAME>" __copyright__ = "Copyleft (c) 2018, <NAME>" __credits__ = ["<NAME>"] __license__ = "ApacheV2.0" __version__ = "0.1.0" __maintainer__ = "<NAME>" __email__ = "<EMA...
import pytest from matchable.exceptions import NoMatchError from matchable.match import IsInstance from matchable.match import Match as match from matchable.spec import Options, Spec, CopyUpdate, LastSeenWins, Wrapper, WRAPPER_TYPES @pytest.fixture def patterns(type_a, type_b, type_c): return { type_a: d...
##################### IMPORT STATEMENTS ##################### # required to view plots on AWS instance - must come first from typing import List import matplotlib matplotlib.use('Agg') # dependencies import csv import cv2 import numpy as np import random import matplotlib.pyplot as plt from sklearn.model_selection imp...
from typing import Optional, List, Dict, TYPE_CHECKING, Union from api_call.arium.api.request import asset_list, asset_get, asset_versions, asset_post, asset_rename, asset_copy, \ asset_lock, asset_delete, asset_get_payload_description, asset_update_payload_description, asset_get_data, \ asset_set_description,...
""" Fluid particles travelling through a vector field By <NAME> """ import pygame; import math; from math import hypot, atan2, sin, cos, pi; pygame.init(); WIDTH, HEIGHT = 600, 600; TITLE = "Fluid simulation"; MAX_FPS = 30; TWO_PI = 2 * pi; QUARTER_PI = pi / 4; WHITE = (255, 255, 255); RED = (255, 0, 0); BLACK = (0,...
from typing import IO, Tuple import logging from matplotlib.collections import LineCollection from matplotlib.collections import EllipseCollection from matplotlib.collections import PathCollection from matplotlib.path import Path import numpy as np import math from ..ModelBase import Justify, rgb from ..AbstractPlot...
#!/usr/bin/env python3 # -*- coding: utf-8 -*- """ pd_clinical_outcome_stats.py Using the before and after treatment motor scores of Parkison's patients, this script calculates the motor improvement score and percentage STN activation. It also performs Wilcoxon signed rank test based on the improvement score and creat...
""" Fortran namelist parser. Converts namelists to Python dictionaries. Based on https://gist.github.com/krischer/4943658. Should be fairly robust. Cannot be used for verifying fortran namelists as it is rather forgiving. Error messages during parsing are kind of messy right now. Usage ===== >>> from namelist impo...
#!usr/bin/env python3 import numpy as np import random from matplotlib import pyplot as plt class Node: def __init__(self, location, cost=0, children=[], parent=None): self.location = location self.cost = cost self.children = children self.parent = parent def add_child(self, no...
""" MIT License Copyright (c) 2017 <NAME>, <NAME>, <NAME> Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge,...
from itertools import chain, combinations from django.http import JsonResponse, HttpResponseNotFound, HttpResponse from django.shortcuts import render, redirect, get_object_or_404 from django.template.loader import TemplateDoesNotExist from django.views.decorators.http import require_POST from badge.registry import B...
# -*- coding: utf-8 -*- """ Tencent is pleased to support the open source community by making 蓝鲸智云PaaS平台社区版 (BlueKing PaaS Community Edition) available. Copyright (C) 2017-2021 TH<NAME>, a Tencent company. All rights reserved. Licensed under the MIT License (the "License"); you may not use this file except in complianc...
""" Definition of the ESIM model. """ # <NAME>, 2018. import torch import torch.nn as nn from vaa.layers import RNNDropout, Seq2SeqEncoder, SoftmaxAttention, LinerEncoder from vaa.utils import get_mask, replace_masked # from allennlp.modules.elmo import Elmo, batch_to_ids class ESIM(nn.Module): """ Implementa...
from django.http import JsonResponse from django.shortcuts import render, redirect from django.views.decorators.csrf import csrf_exempt from django.contrib.auth.decorators import login_required from django.contrib import messages import json from urllib.parse import unquote from .models import CustomUser, UserRead, Us...
import hvac import requests from jinja2 import Template from flask import current_app from ...shared import constants as c from ...shared.connectors.vault import create_client, get_root_client from ..models.project import Project def get_project_client(project_id): """ Get "project" Vault client instance """ ...
import itertools from collections import defaultdict import numpy as np from .get_atom_properties import getAtomProperties class Atom: def __init__(self, element, label, aindex, mass, x, y, z, intensity): """ 原子类 :param element: 元素符号 :param label: 晶体文件里的原子标签,如C001 :param ...
from .. import generator from .. import mhealth_format as mh import pandas as pd from pyarrow import csv import datetime import os ACTIGRAPH_TEMPLATE = """------------ Data File Created By ActiGraph GT3X+ ActiLife v6.13.3 Firmware v2.5.0 date format M/d/yyyy at {} Hz Filter Normal ----------- Serial Number: {} Start ...
import pandas as pd import numpy as np import matplotlib.pyplot as plt import random import time import sys MIN_SAMPLE_SIZE = 100 MAX_SAMPLE_SIZE = 100000 NUM_SAMPLES = 100 sample_sizes = np.linspace(MIN_SAMPLE_SIZE, MAX_SAMPLE_SIZE, NUM_SAMPLES, ...
#!/usr/bin/env python ######################################################################################### # # Compute DTI. # # --------------------------------------------------------------------------------------- # Copyright (c) 2015 Polytechnique Montreal <www.neuro.polymtl.ca> # Author: <NAME> # # About the l...
# coding=utf-8 # Copyright 2018 Google LLC & <NAME>. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law o...
import datetime import logging from .log_analyst.settle_process import SettleInformation from .log_analyst.settle_process import __get_position_csv_name from .log_analyst.settle_process import push_positions_and_trades_into_database from .log_analyst.settle_process import summary_daily_trades from .check_and_settle.ch...
from lxml import etree from xml.sax.saxutils import quoteattr, escape from functools import partial from typing import Callable, IO Matcher = Callable[[str], bool] Transformer = Callable[[etree.ElementBase], etree.ElementBase] def eq_matcher(tag_name: str) -> Matcher: def inner(other: str) -> bool: retur...
#!/usr/bin/env python import xarray as xr import matplotlib.pyplot as plt import cartopy.crs as ccrs import argparse as ap import DUST.plot.plotting as dplot import pandas as pd from matplotlib import rcParams import os def process_data(ds, method='mean', area=None): time0 = str(ds.time[0].dt.strftime("%Y")...
import numpy as np import collections import tensorflow as tf from nltk.tokenize import word_tokenize from tensorflow.keras import Model, layers import csv import re import pylab MAX_DOCUMENT_LENGTH = 100 N_FILTERS = 10 HIDDEN_SIZE = 20 EMBEDDING_SIZE = 50 FILTER_SHAPE1 = [20, 256] POOLING_WINDOW = 4 PO...
from __future__ import annotations import numpy as np import pandas as pd from sklearn import datasets from IMLearn.metrics import mean_square_error from sklearn.model_selection import train_test_split from IMLearn.model_selection import cross_validate from IMLearn.learners.regressors import PolynomialFitting, LinearRe...
#!/usr/bin/env python # encoding: utf-8 from rest_framework import serializers from rest_framework.serializers import ImageField from rest_framework.settings import api_settings from rest_framework.fields import SerializerMethodField from v1.recipe.models import Recipe, SubRecipe from v1.recipe_groups.models import T...
import ast import html import json import logging import os import re import numpy as np from colorsplash_common.image_ids import ImageIdsTableHelper from colorsplash_common.rgb import RGBTableHelper from context import Context from dotenv import load_dotenv from exceptions.exceptions import InputError, ColorSplashExc...
#!/usr/bin/env python3 """UK Met Office Historical Station Observations.""" from locale import atof from mrjob.job import MRJob from mrjob.step import MRStep from statistics import mean import os import re class Mapper: """ Mapper class. Map data from Met Office Historical Station Observations. """ ...
"""Manages Amanda components (plugins and drivers). Copyright 2018 - <NAME> <<EMAIL>>. Licensed under MIT.""" import os import importlib import configobj import config import collections plugins = [] drivers = [] def _import(path): "Imports and returns the module from the given path." p = os.path.split(path...
import argparse import os import io import shutil import tarfile from sklearn.model_selection import train_test_split import wget from deepspeech_pytorch.data.data_opts import add_data_opts from deepspeech_pytorch.data.utils import create_manifest def _format_training_data(root_path, val_f...
'''Order resource.''' from flask import request from flask_restful import Resource from api.v2.models.meal_model import Meal from api.v2.models.order_model import Order from api.v2.models.user_model import User from api.v2.helpers.decorators import login_required, admin_required class DBOrderResource(Resource): ...
from __future__ import print_function import socket import threading import collections import numpy as np STOP_SOCKET = 'stopsocket' # ('%10s%100s%016d' % (SERIALIZE_VERSION=='1.0', name, length * (sizeof // 8))).encode() + buff[:length * sizeof] def read_double_vec_1_0(readfunc, verbose=True): name = readfun...
# Copyright 2019 Google LLC # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # https://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, soft...
import torch from torch.optim import Adam from torch.utils.data import DataLoader import torch.nn.functional as F from einops import rearrange # data import sidechainnet as scn from sidechainnet.sequence.utils import VOCAB from sidechainnet.structure.build_info import NUM_COORDS_PER_RES # models from alphafold2_pytor...
import copy import numpy as np import torch import torch.nn as nn import torch.nn.functional as F from torch.distributions import Normal import math device = torch.device("cuda:0" if torch.cuda.is_available() else "cpu") def build_net(layer_shape, activation, output_activation): '''build net with for loop''' layers...
__author__ = 'HaoBin' class HashTable(): def __init__(self, size=11): # 11 because it's a small enough prime # just initialising... self.count = 0 self.tablesize = size self.array = [None] * size def __len__(self): return self.count def load(self): ...
import json import os import sys from common.course_config import get_course from common.db import connect_db, transaction_db from common.oauth_client import create_oauth_client, get_user, is_logged_in, is_staff from common.rpc.howamidoing import upload_grades as rpc_upload_grades from common.rpc.secrets import only f...
import json import copy import arbor as arb def __make_dicts(jfile): params = { "temperature-K": None, "init-membrane-potential": None, "axial-resistivity": None, "membrane-capacitance": None, } ions = {} for ion in {"ca", "na", "k"}: ions[ion] = { "init-int-concentration" : None, "...
from datetime import datetime from discord.ext import commands, tasks from lib.mysqlwrapper import mysql from lib.rediswrapper import Redis from prettytable import PrettyTable import discord import lib.embedder import logging import os class Maintenance(commands.Cog): """Cog for running maintenance task loops ...
""" FCN8 class. Library: Tensowflow 2.2.0, pyTorch 1.5.1 Author: <NAME> Email: <EMAIL> """ from __future__ import absolute_import, division, print_function import torch from ..encoders.squeeze_extractor import * class FCN8(torch.nn.Module): def __init__(self, n_classes, pretrained_model: SqueezeExtractor): ...
# -*- coding: utf-8 -*- """ Classes related to exposing an interface to the OpenImageDebugger window """ import ctypes import ctypes.util import platform import sys import time FETCH_BUFFER_CBK_TYPE = ctypes.CFUNCTYPE(ctypes.c_int, ctypes.c_char_p) PLATFORM_NAME = platform....
import mpmath from ..distributions import normal __all__ = ['pearsonr', 'pearsonr_ci'] def pearsonr(x, y, alternative='two-sided'): """ Pearson's correlation coefficient. Returns the correlation coefficient r and the p-value. x and y must be one-dimensional sequences with the same lengths. ...
# Generated by Django 3.2.3 on 2021-06-16 19:52 import datetime as dt from time import sleep from django.db import migrations, models from django.db.models.aggregates import Sum import django.db.models.deletion from loguru import logger def translate_spotify_demographic_data(apps, schema_editor): Podcast = apps...
""" make csv file (e.g. vocab_words/babyberta.csv) that contains tokens in a tokenizer configuration file, alongside their frequency in corpora of interest (e.g. childes, newsela, wikipedia). A huggingface tokenizers v0.10 configuration file is expected. """ import spacy import json from pathlib import Path import pan...
import sublime import sublime_plugin import sys class AnsibleVaultBase(sublime_plugin.TextCommand): def __init__(self, view) -> None: self.view = view self.ansible_cfg = None if self.view.window() is not None: if self.get_setting("site_packages_directory", default=None) is not...
# -*- coding: utf-8 -*- ''' bybit-market-maker ------------------------ A very simple market maker bot that relies on the pybit module. Please note that the bot has very little risk management features. This algorithm is NOT equivalent to financial advice. Don't be an idiot; use at your own risk! Documentation can be...
# coding=utf-8 # Copyright 2020 HuggingFace Datasets Authors. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applica...
from torch.utils.data import Dataset import torch import numpy as np from tqdm import tqdm from collections import Counter from copy import deepcopy def load_hotel_review_data(path, sentence_len): """ Load Hotel Reviews data from pickle distributed in https://drive.google.com/file/d/0B52eYWrYWqIpQzhBNkVxaV9m...
#!/usr/bin/env python # -*- coding: utf-8 -*- import os from bson import errors as bson_errors from bson import json_util, objectid from flask import Flask, Response, request from pymongo import MongoClient import config import errors app = Flask(__name__) app.config.from_object(config.main_config) if os.environ....
#version 1.0 - December 2019 #import packages import re import sqlite3 import datetime #ask the name of the txt file fname = input("Enter file name: ") #ask the name of the source file - The name should be written exactly as it is in NexisUni; for instance "de Telegraaf" is correct, "Telegraaf" is not correct Newspa...
#!/usr/bin/env python # Interface to FLIR AX8 camera import urllib.request import urllib.parse Reverse_engineering_notes = ''' wget --post-data 'action=set&resource=.resmon.action.snapshot&value=true' http://192.168.15.6/res.php wget --post-data 'action=get&resource=.image.services.store.filename' http://192.168....
""" Set of methods to make some common plots for the CNN outputs """ import matplotlib.pyplot as plt import numpy as np from matplotlib.offsetbox import OffsetImage, AnnotationBbox from scipy.spatial.distance import cdist import scipy.ndimage as nd def plot_embedding(X, y, num_classes, labels=None, title=None, indice...
import numpy as np import exetera.core.persistence as prst def at_least_one_symptom_v1(assessment_df): """ Filter the rows with at least one symptom reported. :param assessment_df: The assessment dataframe. :return: A numpy array of bool marking matched rows. """ list_symptoms = ['fatigue', '...
# simulate_sunlight.py - validate the insolation on an oblique sphere import numpy as np from scipy import integrate, optimize import matplotlib.pyplot as plt import seaborn as sns sns.set_style('whitegrid') AXIAL_TILTS = np.linspace(0, np.pi/2, 20) LATITUDES = np.linspace(0, np.pi/2, 16) def vector(λ, θ): return ...
from socket import socket, MSG_PEEK from socketserver import TCPServer, BaseRequestHandler, ThreadingTCPServer from typing import Optional # Import our protocol specification. # This is shared between the client and the server to ensure the values stay consistent. import scuffed_protocol class MyServerDelegate(BaseR...
#!/usr/bin/env python3 import argparse import datetime from enum import Enum from gi.repository.GLib import MainLoop, Variant import pydbus import sys from typing import Any, Callable, Dict, List, Literal, Optional, Set, Tuple, Union def log(*args, **kwargs) -> None: """ Write a time-stamped message to an out...
from __future__ import unicode_literals import re from abc import ABCMeta, abstractmethod from datetime import datetime from decimal import Decimal from six import with_metaclass class Field(with_metaclass(ABCMeta, object)): def __init__(self, position, length, value=None, tag=None): self.position = pos...
"""Generates predictions for closing price of a symbol for 4 next periods""" import tensorflow as tf import pandas as pd import numpy as np import joblib import random from datetime import datetime import time import math from generate_twitter_sentiment import generate_twitter_sentiment from generate_technical_indicat...
from __future__ import print_function import argparse import binascii import csv from itertools import product import os import re import sqlite3 import sys """ MIT License Copyright (c) 2017 <NAME>, <NAME> Please share comments and questions at: https://github.com/PythonForensics/PythonForensicsCookbook or ...
import logging import logging.handlers import os.path import traceback from collections import deque from enum import IntEnum from logging import DEBUG LOG_FILE_NAME = 'current.log' LOG_FOLDER_NAME = 'compipe_logs' LOG_FILE_PATH = os.path.join(LOG_FOLDER_NAME, LOG_FILE_NAME) class LOG_COLOR: HEADER = '\033[95m' ...
import os from shutil import rmtree import pytest import xarray as xr from xarray.testing import assert_equal from pych.pigmachine.interp_obcs import * from rosypig import ControlField, Simulation from rosypig.test.test_common import get_pig_grid from .test_common import get_many_obs, get_single_obs from ..oidriver imp...
import torch from torchsummary import summary from ...data.loader import FloatDataset, PhaseDataLoader from .recurrence import RecurrenceLayer from ..utils import train_model from sklearn.preprocessing import StandardScaler import numpy as np from .._base import ClassifierMixin torch.backends.cudnn.deterministic = T...
import uuid import logging import asyncio import aiohttp import socket from functools import partial from aiohttp import web from collections import namedtuple from itertools import islice logger = logging.getLogger(__name__) Connection = namedtuple('Connection', ('transport', 'channel')) def limited_as_completed(co...
import collections import csv import logging import os import mapdamage class MisincorporationRates: def __init__(self, libraries, length): self.length = length self.data = {} for library in libraries: table_lib = self.data[library] = {} for end in ("5p", "3p"): ...
# -*- coding: utf-8 -*- # python standard import time # python extended import numpy as np from scipy.integrate import simps from scipy.fftpack import fft, ifft, fftfreq from scipy.spatial.distance import cdist from scipy.sparse import diags from scipy.linalg import inv # project from .kickstart import orthonormal ...
import numpy as np import scipy as scipy from numpy.random import uniform import scipy.stats np.set_printoptions(threshold=3) np.set_printoptions(suppress=True) import cv2 def drawLines(img, points, r, g, b): cv2.polylines(img, [np.int32(points)], isClosed=False, color=(r, g, b)) def drawCross(img, center, r, ...
"""Simulation CLI entrypoint.""" import logging import sys from argparse import Namespace from functools import partial, reduce from time import time from typing import Callable, Iterable, Iterator, Optional, Tuple, TypeVar import numpy as np from tunable import Tunable from ...output import Output from ...parameters...
""" Check to see if a single small molecule set of charges is convereged after a round of IPolQ charge derivation. This only works for a single restype in the library and resp output files. Parameters ---------- library : str sys.argv[1], the library file (OFF format) containing previous charges. resp_out : str ...
# -*- coding: utf-8 -*- import struct import datetime from collections import OrderedDict from pymysql.util import byte2int, int2byte def iter_bytes_to_string(hash): if issubclass(hash.__class__, {}.__class__): for key in hash.keys(): if not issubclass(hash[key].__class__, {}.__class__): ...
#!/usr/bin/env python import os import sys import json import csv from bs4 import BeautifulSoup from aisikl.app import Application, assert_ops from fladgejt.login import create_client from fladgejt.helpers import find_option, find_row from console import settings def prihlas_sa(): username = os.environ['AIS_USE...
import torch import numpy as np import sys sys.path.append("../semi-supervised") torch.manual_seed(1337) np.random.seed(1337) cuda = torch.cuda.is_available() print("CUDA: {}".format(cuda)) def binary_cross_entropy(r, x): "Drop in replacement until PyTorch adds `reduce` keyword." return -torch.sum(x * torch....
#!/usr/bin/env python3 # -*- coding: utf-8 -*- import argparse import matplotlib.pyplot as plt import pandas as pd from lifelines import KaplanMeierFitter from lifelines.statistics import multivariate_logrank_test from pamogk import config from pamogk.data_processor import rnaseq_processor as rp from pamogk.lib.sutil...
#! /usr/bin/env python # -*- coding: utf-8 -*- # Copyright 2010 British Broadcasting Corporation and Kamaelia Contributors(1) # # (1) Kamaelia Contributors are listed in the AUTHORS file and at # http://www.kamaelia.org/AUTHORS - please extend this file, # not this notice. # # Licensed under the Apache ...