| |
| """Materialize the reference EDA features without reopening the VibFrame.""" |
|
|
| from __future__ import annotations |
|
|
| import argparse |
| from pathlib import Path |
|
|
| from drmhb_workflow import add_reference_features, positive_int |
| from vibframe_anndata import validate_streamed_h5ad |
|
|
|
|
| def main() -> None: |
| parser = argparse.ArgumentParser(description=__doc__) |
| parser.add_argument("source", type=Path) |
| parser.add_argument("output", type=Path) |
| parser.add_argument("--block-rows", type=positive_int, default=256) |
| parser.add_argument( |
| "--features-config", type=Path, help="Optional package-format YAML" |
| ) |
| parser.add_argument("--overwrite", action="store_true") |
| args = parser.parse_args() |
| output = add_reference_features( |
| args.source, |
| args.output, |
| block_rows=args.block_rows, |
| config=args.features_config, |
| overwrite=args.overwrite, |
| ) |
| report = validate_streamed_h5ad(output) |
| print(f"Created: {output}\nX shape: ({report['n_obs']}, {report['n_vars']})") |
| print("Raw coverage and archived-annotation identities are unchanged.") |
| print( |
| "Published reference: 468 source/machine-scoped columns, not 468 dense fleet-wide variables." |
| ) |
|
|
|
|
| if __name__ == "__main__": |
| main() |
|
|
