| |
| """List/read/export original evaluation sidecars directly from H5AD, without raw arrays.""" |
|
|
| from __future__ import annotations |
|
|
| import argparse |
| import json |
| from pathlib import Path |
|
|
| from drmhb_workflow import check_version |
| from vibframe_anndata import ( |
| export_evaluation_files, |
| list_evaluation_files, |
| read_evaluation_json, |
| read_evaluation_table, |
| ) |
|
|
|
|
| def main() -> None: |
| parser = argparse.ArgumentParser(description=__doc__) |
| parser.add_argument("h5ad", type=Path) |
| parser.add_argument("--path", help="Exact relative path from the inventory") |
| parser.add_argument( |
| "--source", help="Exact source ID; required for ambiguous paths" |
| ) |
| parser.add_argument( |
| "--export", type=Path, help="Recover all original sidecars (refuses overwrites)" |
| ) |
| args = parser.parse_args() |
| check_version() |
| inventory = list_evaluation_files(args.h5ad) |
| print(inventory[["source", "path", "kind", "size_bytes"]].to_string(index=False)) |
| if args.path: |
| if args.path.endswith(".parquet"): |
| table = read_evaluation_table(args.h5ad, args.path, source=args.source) |
| print("\nArrow schema:\n", table.schema) |
| print(table.slice(0, 5).to_pandas().to_string(index=False)) |
| elif args.path.endswith(".json"): |
| print( |
| json.dumps( |
| read_evaluation_json(args.h5ad, args.path, source=args.source), |
| indent=2, |
| ) |
| ) |
| else: |
| parser.error( |
| "--path must be .parquet or .json; use export for other byte-exact formats" |
| ) |
| if args.export: |
| paths = export_evaluation_files(args.h5ad, args.export, source=args.source) |
| print( |
| f"Exported {len(paths)} original files. Dataset-wide scope, not a relabelled subset." |
| ) |
|
|
|
|
| if __name__ == "__main__": |
| main() |
|
|
