repo stringlengths 1 99 | file stringlengths 13 215 | code stringlengths 12 59.2M | file_length int64 12 59.2M | avg_line_length float64 3.82 1.48M | max_line_length int64 12 2.51M | extension_type stringclasses 1
value |
|---|---|---|---|---|---|---|
catboost | catboost-master/contrib/python/appnope/appnope/_nope.py | #-----------------------------------------------------------------------------
# Copyright (C) 2013 Min RK
#
# Distributed under the terms of the 2-clause BSD License.
#-----------------------------------------------------------------------------
from contextlib import contextmanager
import ctypes
import ctypes.uti... | 4,106 | 29.422222 | 111 | py |
catboost | catboost-master/contrib/python/numpy/py3/numpy/core/_add_newdocs.py | """
This is only meant to add docs to objects defined in C-extension modules.
The purpose is to allow easier editing of the docstrings without
requiring a re-compile.
NOTE: Many of the methods of ndarray have corresponding functions.
If you update these docstrings, please keep also the ones in
core/fromnum... | 201,399 | 28.397168 | 128 | py |
catboost | catboost-master/contrib/python/numpy/py3/numpy/ma/tests/test_core.py | # pylint: disable-msg=W0400,W0511,W0611,W0612,W0614,R0201,E1102
"""Tests suite for MaskedArray & subclassing.
:author: Pierre Gerard-Marchant
:contact: pierregm_at_uga_dot_edu
"""
__author__ = "Pierre GF Gerard-Marchant"
import sys
import warnings
import operator
import itertools
import textwrap
import pytest
from f... | 205,567 | 36.725821 | 102 | py |
catboost | catboost-master/contrib/python/pandas/py3/pandas/core/config_init.py | """
This module is imported from the pandas package __init__.py file
in order to ensure that the core.config options registered here will
be available as soon as the user loads the package. if register_option
is invoked inside specific modules, they will not be registered until that
module is imported, which may or may... | 28,429 | 27.659274 | 88 | py |
catboost | catboost-master/contrib/python/pandas/py3/pandas/core/frame.py | """
DataFrame
---------
An efficient 2D container for potentially mixed-type time series or other
labeled data series.
Similar to its R counterpart, data.frame, except providing automatic data
alignment and a host of useful data manipulation methods having to do with the
labeling information
"""
from __future__ import... | 412,820 | 33.313108 | 170 | py |
catboost | catboost-master/contrib/python/pandas/py3/pandas/io/formats/html.py | """
Module for formatting output data in HTML.
"""
from __future__ import annotations
from textwrap import dedent
from typing import (
Any,
Final,
Hashable,
Iterable,
Mapping,
cast,
)
from pandas._config import get_option
from pandas._libs import lib
from pandas import (
MultiIndex,
... | 23,515 | 36.033071 | 88 | py |
catboost | catboost-master/contrib/python/pandas/py3/pandas/io/formats/style_render.py | from __future__ import annotations
from collections import defaultdict
from functools import partial
import re
from typing import (
Any,
Callable,
DefaultDict,
Dict,
List,
Optional,
Sequence,
Tuple,
TypedDict,
Union,
)
from uuid import uuid4
import numpy as np
from pandas._con... | 85,621 | 35.481466 | 88 | py |
catboost | catboost-master/contrib/python/pandas/py2/pandas/core/config_init.py | """
This module is imported from the pandas package __init__.py file
in order to ensure that the core.config options registered here will
be available as soon as the user loads the package. if register_option
is invoked inside specific modules, they will not be registered until that
module is imported, which may or may... | 17,143 | 32.748031 | 79 | py |
catboost | catboost-master/contrib/python/pandas/py2/pandas/io/formats/style.py | """
Module for applying conditional formatting to
DataFrames and Series.
"""
from collections import defaultdict
from contextlib import contextmanager
import copy
from functools import partial
from itertools import product
from uuid import uuid1
import numpy as np
from pandas.compat import range
from pandas.util._de... | 46,534 | 33.016813 | 79 | py |
catboost | catboost-master/contrib/python/pandas/py2/pandas/io/formats/html.py | # -*- coding: utf-8 -*-
"""
Module for formatting output data in HTML.
"""
from __future__ import print_function
from textwrap import dedent
from pandas.compat import OrderedDict, lzip, map, range, u, unichr, zip
from pandas.core.dtypes.generic import ABCMultiIndex
from pandas import compat
import pandas.core.comm... | 21,226 | 38.900376 | 79 | py |
catboost | catboost-master/contrib/python/jupyter-core/py3/jupyter_core/tests/dotipython_empty/profile_default/ipython_notebook_config.py | # Configuration file for ipython-notebook.
c = get_config()
# ------------------------------------------------------------------------------
# NotebookApp configuration
# ------------------------------------------------------------------------------
# NotebookApp will inherit config from: BaseIPythonApplication, App... | 19,945 | 35.331512 | 113 | py |
catboost | catboost-master/contrib/python/jupyter-core/py2/jupyter_core/tests/dotipython_empty/profile_default/ipython_notebook_config.py | # Configuration file for ipython-notebook.
c = get_config()
#------------------------------------------------------------------------------
# NotebookApp configuration
#------------------------------------------------------------------------------
# NotebookApp will inherit config from: BaseIPythonApplication, Appli... | 19,986 | 35.406193 | 113 | py |
catboost | catboost-master/contrib/python/Pygments/py3/pygments/lexers/_lasso_builtins.py | """
pygments.lexers._lasso_builtins
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Built-in Lasso types, traits, methods, and members.
:copyright: Copyright 2006-2022 by the Pygments team, see AUTHORS.
:license: BSD, see LICENSE for details.
"""
BUILTINS = {
'Types': (
'array',
'atbegin',
... | 134,510 | 24.250798 | 70 | py |
catboost | catboost-master/contrib/python/Pygments/py2/pygments/lexers/_lasso_builtins.py | # -*- coding: utf-8 -*-
"""
pygments.lexers._lasso_builtins
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Built-in Lasso types, traits, methods, and members.
:copyright: Copyright 2006-2019 by the Pygments team, see AUTHORS.
:license: BSD, see LICENSE for details.
"""
BUILTINS = {
'Types': (
'array... | 134,534 | 24.250563 | 70 | py |
catboost | catboost-master/contrib/python/ipywidgets/py3/ipywidgets/embed.py | # Copyright (c) Jupyter Development Team.
# Distributed under the terms of the Modified BSD License.
#
#
# Parts of this code is from IPyVolume (24.05.2017), used here under
# this copyright and license with permission from the author
# (see https://github.com/jupyter-widgets/ipywidgets/pull/1387)
"""
Functions for ge... | 11,287 | 34.275 | 182 | py |
catboost | catboost-master/contrib/python/ipywidgets/py2/ipywidgets/embed.py | # Copyright (c) Jupyter Development Team.
# Distributed under the terms of the Modified BSD License.
#
#
# Parts of this code is from IPyVolume (24.05.2017), used here under
# this copyright and license with permission from the author
# (see https://github.com/jupyter-widgets/ipywidgets/pull/1387)
"""
Functions for ge... | 11,227 | 34.0875 | 182 | py |
catboost | catboost-master/contrib/python/threadpoolctl/threadpoolctl.py | """threadpoolctl
This module provides utilities to introspect native libraries that relies on
thread pools (notably BLAS and OpenMP implementations) and dynamically set the
maximal number of threads they can use.
"""
# License: BSD 3-Clause
# The code to introspect dynamically loaded libraries on POSIX systems is
# a... | 41,112 | 37.351679 | 88 | py |
catboost | catboost-master/contrib/python/plotly/py3/plotly/basedatatypes.py | from __future__ import absolute_import
import collections
from collections import OrderedDict
import re
import warnings
from contextlib import contextmanager
from copy import deepcopy, copy
import itertools
from functools import reduce
from _plotly_utils.utils import (
_natural_sort_strings,
_get_int_type,
... | 224,978 | 34.468863 | 193 | py |
catboost | catboost-master/contrib/python/plotly/py3/plotly/io/_html.py | import uuid
import os
from pathlib import Path
import webbrowser
from _plotly_utils.optional_imports import get_module
from plotly.io._utils import validate_coerce_fig_to_dict, plotly_cdn_url
from plotly.offline.offline import _get_jconfig, get_plotlyjs
from plotly import utils
_json = get_module("json")
# Build sc... | 20,879 | 36.826087 | 127 | py |
catboost | catboost-master/contrib/python/plotly/py3/plotly/io/_kaleido.py | from __future__ import absolute_import
import os
import json
from pathlib import Path
import plotly
from plotly.io._utils import validate_coerce_fig_to_dict
try:
from kaleido.scopes.plotly import PlotlyScope
scope = PlotlyScope()
# Compute absolute path to the 'plotly/package_data/' directory
root_di... | 11,251 | 30.695775 | 87 | py |
catboost | catboost-master/contrib/python/plotly/py3/plotly/io/_orca.py | from __future__ import absolute_import
import atexit
import json
import os
import socket
import subprocess
import sys
import threading
import warnings
from copy import copy
from contextlib import contextmanager
from pathlib import Path
import tenacity
import _plotly_utils.utils
import plotly
from plotly.files import... | 54,008 | 28.888766 | 88 | py |
catboost | catboost-master/contrib/python/plotly/py3/plotly/io/_base_renderers.py | from __future__ import absolute_import
import base64
import json
import webbrowser
import inspect
import os
from os.path import isdir
from plotly import utils, optional_imports
from plotly.io import to_json, to_image, write_image, write_html
from plotly.io._orca import ensure_server
from plotly.io._utils import plotly... | 26,809 | 28.888517 | 129 | py |
catboost | catboost-master/contrib/python/plotly/py3/plotly/offline/offline.py | """ Plotly Offline
A module to use Plotly's graphing library with Python
without connecting to a public or private plotly enterprise
server.
"""
from __future__ import absolute_import
import os
import warnings
import pkgutil
import plotly
import plotly.tools
from plotly.optional_imports import get_module
... | 31,708 | 36.703924 | 127 | py |
catboost | catboost-master/contrib/python/plotly/py2/plotly/io/_html.py | import uuid
import json
import os
import webbrowser
import six
from plotly.io._utils import validate_coerce_fig_to_dict
from plotly.offline.offline import _get_jconfig, get_plotlyjs
from plotly import utils
# Build script to set global PlotlyConfig object. This must execute before
# plotly.js is loaded.
_window_plo... | 20,152 | 36.045956 | 89 | py |
catboost | catboost-master/contrib/python/plotly/py2/plotly/io/_orca.py | from __future__ import absolute_import
import atexit
import json
import os
import socket
import subprocess
import sys
import threading
import warnings
from copy import copy
from contextlib import contextmanager
import retrying
from six import string_types
import _plotly_utils.utils
import plotly
from plotly.files im... | 53,125 | 28.846067 | 88 | py |
catboost | catboost-master/contrib/python/plotly/py2/plotly/io/_base_renderers.py | from __future__ import absolute_import
import base64
import json
import webbrowser
import inspect
import os
from os.path import isdir
import six
from plotly.io import to_json, to_image, write_image, write_html
from plotly import utils, optional_imports
from plotly.io._orca import ensure_server
from plotly.offline.offl... | 24,000 | 28.521525 | 87 | py |
catboost | catboost-master/contrib/python/plotly/py2/plotly/offline/offline.py | """ Plotly Offline
A module to use Plotly's graphing library with Python
without connecting to a public or private plotly enterprise
server.
"""
from __future__ import absolute_import
import os
import warnings
import pkgutil
import plotly
import plotly.tools
from plotly.optional_imports import get_module
... | 31,651 | 36.636147 | 89 | py |
catboost | catboost-master/contrib/python/ipython/py3/IPython/core/magics/display.py | """Simple magics for display formats"""
#-----------------------------------------------------------------------------
# Copyright (c) 2012 The IPython Development Team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
#----... | 3,130 | 32.308511 | 84 | py |
catboost | catboost-master/contrib/python/ipython/py2/IPython/core/magics/display.py | """Simple magics for display formats"""
#-----------------------------------------------------------------------------
# Copyright (c) 2012 The IPython Development Team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
#----... | 2,127 | 31.242424 | 80 | py |
catboost | catboost-master/contrib/python/ipython/py2/IPython/external/mathjax.py | #!/usr/bin/python
"""
`IPython.external.mathjax` is deprecated with IPython 4.0+
mathjax is now install by default with the notebook package
"""
import sys
if __name__ == '__main__' :
sys.exit("IPython.external.mathjax is deprecated, Mathjax is now installed by default with the notebook package")
| 308 | 21.071429 | 117 | py |
catboost | catboost-master/build/scripts/link_exe.py | import sys
import subprocess
import optparse
import process_command_files as pcf
from process_whole_archive_option import ProcessWholeArchiveOption
def get_leaks_suppressions(cmd):
supp, newcmd = [], []
for arg in cmd:
if arg.endswith(".supp"):
supp.append(arg)
else:
... | 6,210 | 31.689474 | 165 | py |
catboost | catboost-master/build/scripts/link_dyn_lib.py | import sys
import os
import subprocess
import tempfile
import collections
import optparse
import pipes
from process_whole_archive_option import ProcessWholeArchiveOption
def shlex_join(cmd):
# equivalent to shlex.join() in python 3
return ' '.join(
pipes.quote(part)
for part in cmd
)
de... | 10,945 | 29.920904 | 165 | py |
AvatarCLIP | AvatarCLIP-main/AvatarAnimate/main.py | import os
import argparse
from pyhocon import ConfigFactory
import torch
from models.builder import (
build_pose_generator,
build_motion_generator
)
import numpy as np
from visualize import render_pose, render_motion
def main(conf_path):
with open(conf_path) as f:
conf_text = f.read()
f.... | 1,733 | 31.716981 | 77 | py |
AvatarCLIP | AvatarCLIP-main/AvatarAnimate/visualize.py | import torch
from torch import Tensor
import numpy as np
import os
os.environ['PYOPENGL_PLATFORM'] = 'osmesa'
import cv2
import smplx
import pyrender
import trimesh
from body_visualizer.tools.vis_tools import imagearray2file
from human_body_prior.body_model.body_model import BodyModel
class Renderer:
"""
Ren... | 4,225 | 32.808 | 98 | py |
AvatarCLIP | AvatarCLIP-main/AvatarAnimate/models/motion_generation.py | from abc import ABCMeta, abstractmethod
from typing import Optional, Tuple, Union
import torch
from torch import Tensor
import torch.nn as nn
import torch.nn.functional as F
from torch import distributions
import numpy as np
import clip
import smplx
from tqdm import tqdm
from .render import render_one_batch
from huma... | 13,926 | 37.686111 | 94 | py |
AvatarCLIP | AvatarCLIP-main/AvatarAnimate/models/render.py | import torch
import numpy as np
import neural_renderer as nr
obj_fname = 'data/smpl_uv.obj'
_, _, t = nr.load_obj(obj_fname, load_texture=True, texture_size=8)
def render_one_batch(vertices, faces, angles, device):
camera_distance = 2
texture_size = 8
textures = t.reshape(
1,
face... | 1,036 | 24.925 | 67 | py |
AvatarCLIP | AvatarCLIP-main/AvatarAnimate/models/utils.py | # --------------------------------------------------------------------------------------------
# Borrowed from https://github.com/facebookresearch/pytorch3d
# Original licence: Copyright (c) Meta Platforms, Inc. and affiliates., under the BSD License.
# ------------------------------------------------------------------... | 8,416 | 36.914414 | 94 | py |
AvatarCLIP | AvatarCLIP-main/AvatarAnimate/models/pose_generation.py | from abc import ABCMeta, abstractmethod
from typing import Optional, Union, Tuple
import torch
from torch import Tensor
import torch.nn as nn
import torch.nn.functional as F
from torch import distributions
import numpy as np
import clip
import smplx
from tqdm import tqdm
from .render import render_one_batch
from huma... | 12,891 | 38.066667 | 95 | py |
AvatarCLIP | AvatarCLIP-main/Avatar2FBX/export_fbx.py | """
Copyright (C) 2017 Autodesk, Inc.
All rights reserved.
Use of this software is subject to the terms of the Autodesk license agreement
provided at the time of installation or download, or which otherwise accompanies
this software in either electronic or hard copy form.
"""
import sys
sys.path.appe... | 4,967 | 34.741007 | 149 | py |
AvatarCLIP | AvatarCLIP-main/Avatar2FBX/utils/ply_utils.py | import torch
import open3d as o3d
import numpy as np
from smplx import build_layer
from torch import Tensor
import torch.nn.functional as F
def read_ply(fname):
mesh = o3d.io.read_triangle_mesh(fname)
# vertices = np.asarray(mesh.vertices)
# vertex_colors = np.asarray(mesh.vertex_colors)
# faces = np.... | 7,072 | 31.74537 | 132 | py |
AvatarCLIP | AvatarCLIP-main/AvatarGen/AppearanceGen/main.py | import os
import time
import logging
import argparse
import random
import numpy as np
import cv2 as cv
import trimesh
import torch
import torch.nn.functional as F
from torchvision import transforms
from torch.utils.tensorboard import SummaryWriter
from shutil import copyfile
from icecream import ic
from tqdm import tqd... | 46,387 | 46.286442 | 148 | py |
AvatarCLIP | AvatarCLIP-main/AvatarGen/AppearanceGen/drive.py | import os
import copy
import torch
import struct
import pickle
import numpy as np
import open3d as o3d
from tqdm import tqdm
from torch import Tensor
from smplx import build_layer
import torch.nn.functional as F
def batch_rodrigues(
rot_vecs: Tensor,
epsilon: float = 1e-8) -> Tensor:
''' Calculates the rot... | 14,384 | 35.143216 | 194 | py |
AvatarCLIP | AvatarCLIP-main/AvatarGen/AppearanceGen/models/renderer.py | import torch
import torch.nn as nn
import torch.nn.functional as F
import numpy as np
import logging
import mcubes
from icecream import ic
def extract_fields(bound_min, bound_max, resolution, query_func):
N = 64
X = torch.linspace(bound_min[0], bound_max[0], resolution).split(N)
Y = torch.linspace(bound_m... | 17,826 | 43.017284 | 116 | py |
AvatarCLIP | AvatarCLIP-main/AvatarGen/AppearanceGen/models/embedder.py | import torch
import torch.nn as nn
# Positional encoding embedding. Code was taken from https://github.com/bmild/nerf.
class Embedder:
def __init__(self, **kwargs):
self.kwargs = kwargs
self.create_embedding_fn()
def create_embedding_fn(self):
embed_fns = []
d = self.kwargs['i... | 1,528 | 28.403846 | 83 | py |
AvatarCLIP | AvatarCLIP-main/AvatarGen/AppearanceGen/models/utils.py | import torch
import numpy as np
import neural_renderer as nr
from smplx.lbs import *
def norm_np_arr(arr):
return arr / np.linalg.norm(arr)
def lookat(eye, at, up):
zaxis = norm_np_arr(eye - at)
xaxis = norm_np_arr(np.cross(up, zaxis))
yaxis = np.cross(zaxis, xaxis)
viewMatrix = np.array([
... | 8,909 | 34.07874 | 133 | py |
AvatarCLIP | AvatarCLIP-main/AvatarGen/AppearanceGen/models/dataset.py | import torch
import torch.nn.functional as F
import cv2 as cv
import numpy as np
import os
from glob import glob
from icecream import ic
from scipy.spatial.transform import Rotation as Rot
from scipy.spatial.transform import Slerp
import json
import imageio
import logging
from scipy import ndimage
pil_logger = logging.... | 16,112 | 45.301724 | 125 | py |
AvatarCLIP | AvatarCLIP-main/AvatarGen/AppearanceGen/models/fields.py | import torch
import torch.nn as nn
import torch.nn.functional as F
import numpy as np
from models.embedder import get_embedder
# This implementation is borrowed from IDR: https://github.com/lioryariv/idr
class SDFNetwork(nn.Module):
def __init__(self,
d_in,
d_out,
... | 9,340 | 32.722022 | 112 | py |
AvatarCLIP | AvatarCLIP-main/AvatarGen/ShapeGen/main.py | import os
import sys
import math
import torch
import imageio
import argparse
import numpy as np
import neural_renderer as nr
import matplotlib.pyplot as plt
from torch import nn, optim
from torch.nn import functional as F
from smplx.lbs import batch_rodrigues
from smplx import build_layer
from tqdm import tqdm
import... | 6,072 | 39.486667 | 108 | py |
AvatarCLIP | AvatarCLIP-main/AvatarGen/ShapeGen/render.py | import os
import json
import torch
import argparse
import numpy as np
import neural_renderer as nr
import matplotlib.pyplot as plt
from PIL import Image
from smplx.lbs import *
from smplx import build_layer
from utils import readOBJ
def norm_np_arr(arr):
return arr / np.linalg.norm(arr)
def lookat(eye, target,... | 6,795 | 38.283237 | 133 | py |
AvatarCLIP | AvatarCLIP-main/AvatarGen/ShapeGen/utils.py | import os
import torch
import numpy as np
import neural_renderer as nr
obj_fname = './data/smpl_uv.obj'
_, _, texture = nr.load_obj(obj_fname, load_texture=True, texture_size=8)
def render_one_batch(v, f):
camera_distance = 2
elevation = 0
texture_size = 8
batch_size = v.shape[0]
vertices = v
... | 3,099 | 34.227273 | 142 | py |
HEBO | HEBO-master/NAP/HPO_data/fit_xgb_gps.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 1,462 | 40.8 | 104 | py |
HEBO | HEBO-master/NAP/scripts/metabo/test_metabo_antigen.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 5,203 | 34.401361 | 136 | py |
HEBO | HEBO-master/NAP/scripts/metabo/train_metabo_hpo.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 3,939 | 33.26087 | 136 | py |
HEBO | HEBO-master/NAP/scripts/metabo/train_metabo_antigen.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 4,938 | 35.051095 | 136 | py |
HEBO | HEBO-master/NAP/scripts/metabo/validate_metabo_antigen.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 7,882 | 41.15508 | 144 | py |
HEBO | HEBO-master/NAP/scripts/metabo/test_metabo_hpo.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 4,378 | 34.314516 | 136 | py |
HEBO | HEBO-master/NAP/scripts/fsbo/test_fsbo_antigen.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 6,443 | 37.586826 | 116 | py |
HEBO | HEBO-master/NAP/scripts/nap/train_nap_hpo.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 6,915 | 35.787234 | 138 | py |
HEBO | HEBO-master/NAP/scripts/nap/test_nap_hpo.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 6,835 | 37.621469 | 149 | py |
HEBO | HEBO-master/NAP/scripts/nap/train_nap_antigen.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 6,446 | 35.219101 | 120 | py |
HEBO | HEBO-master/NAP/scripts/nap/test_nap_antigen.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 7,570 | 36.855 | 120 | py |
HEBO | HEBO-master/NAP/scripts/nap/validate_nap_antigen.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 9,508 | 39.987069 | 124 | py |
HEBO | HEBO-master/NAP/scripts/nap/validate_nap_hpo.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 8,826 | 39.677419 | 153 | py |
HEBO | HEBO-master/NAP/scripts/gp/test_gp_hpo.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 13,952 | 48.303887 | 121 | py |
HEBO | HEBO-master/NAP/scripts/gp/test_gp_antigen.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 14,328 | 48.926829 | 121 | py |
HEBO | HEBO-master/NAP/antigen_data/create_task_datasets.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 3,497 | 35.4375 | 105 | py |
HEBO | HEBO-master/NAP/nap/policies/nap.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 11,166 | 42.621094 | 154 | py |
HEBO | HEBO-master/NAP/nap/policies/fsbo.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 20,624 | 42.238994 | 181 | py |
HEBO | HEBO-master/NAP/nap/policies/iclr2020_mlp.py | # Copyright (c) 2019
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public License as published
# by the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope ... | 2,434 | 38.918033 | 113 | py |
HEBO | HEBO-master/NAP/nap/policies/mlp.py | # Copyright (c) 2021
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public License as published
# by the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope ... | 2,310 | 37.516667 | 113 | py |
HEBO | HEBO-master/NAP/nap/policies/transformer.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 15,913 | 47.966154 | 131 | py |
HEBO | HEBO-master/NAP/nap/policies/policies.py | # Copyright (c) 2021
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public License as published
# by the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope ... | 14,651 | 33.80285 | 121 | py |
HEBO | HEBO-master/NAP/nap/policies/bar_distribution.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 12,930 | 49.709804 | 179 | py |
HEBO | HEBO-master/NAP/nap/environment/function_gym_nap.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 41,870 | 43.877814 | 161 | py |
HEBO | HEBO-master/NAP/nap/environment/function_gym.py | # Copyright (c) 2021
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public License as published
# by the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope ... | 41,553 | 44.364629 | 164 | py |
HEBO | HEBO-master/NAP/nap/environment/hpo.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 6,343 | 57.201835 | 131 | py |
HEBO | HEBO-master/NAP/nap/RL/utils_gp.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 14,399 | 42.768997 | 120 | py |
HEBO | HEBO-master/NAP/nap/RL/ppo.py | # Copyright (c) 2019
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public License as published
# by the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope ... | 17,947 | 46.989305 | 124 | py |
HEBO | HEBO-master/NAP/nap/RL/ppo_batchrecorder_nap.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 17,781 | 37.740741 | 148 | py |
HEBO | HEBO-master/NAP/nap/RL/ppo_batchrecorder.py | # Copyright (c) 2019
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public License as published
# by the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope ... | 15,626 | 37.680693 | 148 | py |
HEBO | HEBO-master/NAP/nap/RL/botorch_helper.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 7,566 | 43.511765 | 87 | py |
HEBO | HEBO-master/NAP/nap/RL/ppo_nap.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 32,652 | 51.41252 | 145 | py |
HEBO | HEBO-master/NAP/nap/RL/util.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 4,699 | 38.830508 | 114 | py |
HEBO | HEBO-master/NAP/HPOB_data/create_task_datasets.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 5,567 | 39.057554 | 105 | py |
HEBO | HEBO-master/NAP/HPOB_data/convertHPOB.py | # Copyright (C) 2023. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 1,961 | 34.035714 | 111 | py |
HEBO | HEBO-master/MCBO/paper/gp_and_linear_regression_fit.py | import os
import matplotlib.pyplot as plt
import numpy as np
import pandas as pd
import torch
from mcbo.models import ExactGPModel
from mcbo.models.gp.kernel_factory import kernel_factory
from mcbo.search_space import SearchSpace
from mcbo.tasks import TaskBase
class Sin(TaskBase):
@property
def name(self) ... | 2,819 | 30.333333 | 95 | py |
HEBO | HEBO-master/MCBO/tests/search_space/test_eda_search_space.py | import os
import sys
from pathlib import Path
import numpy as np
import torch
from tqdm import tqdm
ROOT_PROJECT = str(Path(os.path.realpath(__file__)).parent.parent.parent)
sys.path[0] = ROOT_PROJECT
from mcbo.search_space.search_space_eda import SearchSpaceEDA
from mcbo.tasks.eda_seq_opt.eda_seq_opt_task import ED... | 2,533 | 42.689655 | 120 | py |
HEBO | HEBO-master/MCBO/tests/models/test_multitask_exact_gp.py | import numpy as np
import torch
from gpytorch.kernels import ScaleKernel, MaternKernel
from mcbo.task_factory import task_factory
from mcbo.models.gp.exact_gp import ExactGPModel
if __name__ == '__main__':
dtype = torch.float64
device = torch.device('cpu')
task1 = task_factory('levy', num_dims=10, variabl... | 1,547 | 36.756098 | 109 | py |
HEBO | HEBO-master/MCBO/tests/models/test_hed_kernel.py | import os
import sys
from pathlib import Path
import torch
from gpytorch.kernels import MaternKernel
ROOT_PROJECT = str(Path(os.path.realpath(__file__)).parent.parent.parent)
sys.path[0] = ROOT_PROJECT
from mcbo.models.gp.kernels import HEDKernel
def test_hed_kernel():
base_kernel = MaternKernel()
hed_num_e... | 661 | 22.642857 | 119 | py |
HEBO | HEBO-master/MCBO/tests/models/test_exact_gp.py | import torch
from mcbo.task_factory import task_factory
from mcbo.models.gp.exact_gp import ExactGPModel
from mcbo.models.gp.kernels import DiffusionKernel
from mcbo.utils.graph_utils import laplacian_eigen_decomposition
from mcbo.utils.plotting_utils import plot_model_prediction
if __name__ == '__main__':
dtype ... | 1,150 | 33.878788 | 114 | py |
HEBO | HEBO-master/MCBO/tests/acq/test_lcb_acq.py | import torch
from gpytorch.kernels import ScaleKernel, MaternKernel
from mcbo.task_factory import task_factory
from mcbo.models.gp.exact_gp import ExactGPModel
from mcbo.acq_funcs.factory import acq_factory
if __name__ == '__main__':
dtype = torch.float64
device = torch.device('cpu')
task = task_factory('... | 932 | 30.1 | 74 | py |
HEBO | HEBO-master/MCBO/tests/acq/test_pi_acq.py | import torch
from gpytorch.kernels import ScaleKernel, MaternKernel
from mcbo.acq_funcs.factory import acq_factory
from mcbo.task_factory import task_factory
from mcbo.models.gp.exact_gp import ExactGPModel
def test_pi():
dtype = torch.float64
task = task_factory('ackley', num_dims=10, variable_type='num', t... | 911 | 25.823529 | 90 | py |
HEBO | HEBO-master/MCBO/tests/acq/test_ei_acq.py | import torch
from gpytorch.kernels import ScaleKernel, MaternKernel
from mcbo.acq_funcs.factory import acq_factory
from mcbo.task_factory import task_factory
from mcbo.models.gp.exact_gp import ExactGPModel
if __name__ == '__main__':
dtype = torch.float64
device = torch.device('cpu')
task = task_factory('... | 955 | 29.83871 | 90 | py |
HEBO | HEBO-master/MCBO/tests/trust_region/test_single_nominal_dim_tr.py | # Copyright (C) 2022. Huawei Technologies Co., Ltd. All rights reserved. Redistribution and use in source and binary
# forms, with or without modification, are permitted provided that the following conditions are met:
#
# 1. Redistributions of source code must retain the above copyright notice, this list of conditions ... | 2,834 | 50.545455 | 120 | py |
HEBO | HEBO-master/MCBO/tests/experiments/test_run_experiments.py | # Copyright (C) 2022. Huawei Technologies Co., Ltd. All rights reserved. Redistribution and use in source and binary
# forms, with or without modification, are permitted provided that the following conditions are met:
#
# 1. Redistributions of source code must retain the above copyright notice, this list of conditions ... | 2,927 | 43.363636 | 117 | py |
HEBO | HEBO-master/MCBO/tests/optimizers/test_bo_builder.py | # Copyright (C) 2022. Huawei Technologies Co., Ltd. All rights reserved. Redistribution and use in source and binary
# forms, with or without modification, are permitted provided that the following conditions are met:
#
# 1. Redistributions of source code must retain the above copyright notice, this list of conditions ... | 5,748 | 37.844595 | 117 | py |
HEBO | HEBO-master/MCBO/tests/optimizers/manual/test_boils.py | # Copyright (C) 2022. Huawei Technologies Co., Ltd. All rights reserved. Redistribution and use in source and binary
# forms, with or without modification, are permitted provided that the following conditions are met:
#
# 1. Redistributions of source code must retain the above copyright notice, this list of conditions ... | 3,127 | 41.849315 | 117 | py |
HEBO | HEBO-master/MCBO/tests/optimizers/manual/test_bocs_warning.py | import torch
from mcbo.search_space import SearchSpace
from mcbo.optimizers.manual.bocs import BOCS
if __name__ == '__main__':
# Create a search space with only binary variables
non_binary_search_space = SearchSpace([{'name': 'var 1', 'type': 'nominal', 'categories': ['A', 'B', 'C']},
... | 1,140 | 48.608696 | 111 | py |
HEBO | HEBO-master/MCBO/tests/optimizers/manual/test_bocs.py | import os
import sys
from pathlib import Path
from typing import Callable, Dict
ROOT_PROJECT = str(Path(os.path.realpath(__file__)).parent.parent.parent)
sys.path[0] = ROOT_PROJECT
import torch
from mcbo.optimizers.manual.bocs import BOCS
from mcbo.utils.plotting_utils import plot_convergence_curve
def input_const... | 1,325 | 28.466667 | 114 | py |
HEBO | HEBO-master/MCBO/tests/optimizers/manual/test_tr_based_cocabo.py | # Copyright (C) 2020. Huawei Technologies Co., Ltd. All rights reserved.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the MIT license.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of ME... | 3,342 | 52.063492 | 243 | py |
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