repo stringlengths 7 55 | path stringlengths 4 127 | func_name stringlengths 1 88 | original_string stringlengths 75 19.8k | language stringclasses 1
value | code stringlengths 75 19.8k | code_tokens list | docstring stringlengths 3 17.3k | docstring_tokens list | sha stringlengths 40 40 | url stringlengths 87 242 | partition stringclasses 1
value |
|---|---|---|---|---|---|---|---|---|---|---|---|
wright-group/WrightTools | WrightTools/artists/_colors.py | grayify_cmap | def grayify_cmap(cmap):
"""Return a grayscale version of the colormap.
`Source`__
__ https://jakevdp.github.io/blog/2014/10/16/how-bad-is-your-colormap/
"""
cmap = plt.cm.get_cmap(cmap)
colors = cmap(np.arange(cmap.N))
# convert RGBA to perceived greyscale luminance
# cf. http://alienr... | python | def grayify_cmap(cmap):
"""Return a grayscale version of the colormap.
`Source`__
__ https://jakevdp.github.io/blog/2014/10/16/how-bad-is-your-colormap/
"""
cmap = plt.cm.get_cmap(cmap)
colors = cmap(np.arange(cmap.N))
# convert RGBA to perceived greyscale luminance
# cf. http://alienr... | [
"def",
"grayify_cmap",
"(",
"cmap",
")",
":",
"cmap",
"=",
"plt",
".",
"cm",
".",
"get_cmap",
"(",
"cmap",
")",
"colors",
"=",
"cmap",
"(",
"np",
".",
"arange",
"(",
"cmap",
".",
"N",
")",
")",
"RGB_weight",
"=",
"[",
"0.299",
",",
"0.587",
",",
... | Return a grayscale version of the colormap.
`Source`__
__ https://jakevdp.github.io/blog/2014/10/16/how-bad-is-your-colormap/ | [
"Return",
"a",
"grayscale",
"version",
"of",
"the",
"colormap",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/artists/_colors.py#L236-L250 | train |
wright-group/WrightTools | WrightTools/artists/_colors.py | get_color_cycle | def get_color_cycle(n, cmap="rainbow", rotations=3):
"""Get a list of RGBA colors following a colormap.
Useful for plotting lots of elements, keeping the color of each unique.
Parameters
----------
n : integer
The number of colors to return.
cmap : string (optional)
The colorma... | python | def get_color_cycle(n, cmap="rainbow", rotations=3):
"""Get a list of RGBA colors following a colormap.
Useful for plotting lots of elements, keeping the color of each unique.
Parameters
----------
n : integer
The number of colors to return.
cmap : string (optional)
The colorma... | [
"def",
"get_color_cycle",
"(",
"n",
",",
"cmap",
"=",
"\"rainbow\"",
",",
"rotations",
"=",
"3",
")",
":",
"cmap",
"=",
"colormaps",
"[",
"cmap",
"]",
"if",
"np",
".",
"mod",
"(",
"n",
",",
"rotations",
")",
"==",
"0",
":",
"per",
"=",
"np",
".",... | Get a list of RGBA colors following a colormap.
Useful for plotting lots of elements, keeping the color of each unique.
Parameters
----------
n : integer
The number of colors to return.
cmap : string (optional)
The colormap to use in the cycle. Default is rainbow.
rotations : i... | [
"Get",
"a",
"list",
"of",
"RGBA",
"colors",
"following",
"a",
"colormap",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/artists/_colors.py#L253-L281 | train |
wright-group/WrightTools | WrightTools/diagrams/delay.py | label_sectors | def label_sectors(
*,
labels=["I", "II", "IV", "VI", "V", "III"],
ax=None,
lw=2,
lc="k",
cs=None,
c_zlevel=2,
c_alpha=0.5,
fontsize=40
):
"""Label the six time-orderings in a three-pulse experiment.
Parameters
----------
labels : list of strings
Labels to pla... | python | def label_sectors(
*,
labels=["I", "II", "IV", "VI", "V", "III"],
ax=None,
lw=2,
lc="k",
cs=None,
c_zlevel=2,
c_alpha=0.5,
fontsize=40
):
"""Label the six time-orderings in a three-pulse experiment.
Parameters
----------
labels : list of strings
Labels to pla... | [
"def",
"label_sectors",
"(",
"*",
",",
"labels",
"=",
"[",
"\"I\"",
",",
"\"II\"",
",",
"\"IV\"",
",",
"\"VI\"",
",",
"\"V\"",
",",
"\"III\"",
"]",
",",
"ax",
"=",
"None",
",",
"lw",
"=",
"2",
",",
"lc",
"=",
"\"k\"",
",",
"cs",
"=",
"None",
",... | Label the six time-orderings in a three-pulse experiment.
Parameters
----------
labels : list of strings
Labels to place within sectors, starting in the upper left and
proceeding clockwise. Default is ['I', 'II', 'IV', 'VI', 'V', 'III'].
ax : matplotlib axis object (optional)
Ax... | [
"Label",
"the",
"six",
"time",
"-",
"orderings",
"in",
"a",
"three",
"-",
"pulse",
"experiment",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/diagrams/delay.py#L13-L76 | train |
wright-group/WrightTools | WrightTools/kit/_calculate.py | fluence | def fluence(
power_mW,
color,
beam_radius,
reprate_Hz,
pulse_width,
color_units="wn",
beam_radius_units="mm",
pulse_width_units="fs_t",
area_type="even",
) -> tuple:
"""Calculate the fluence of a beam.
Parameters
----------
power_mW : number
Time integrated p... | python | def fluence(
power_mW,
color,
beam_radius,
reprate_Hz,
pulse_width,
color_units="wn",
beam_radius_units="mm",
pulse_width_units="fs_t",
area_type="even",
) -> tuple:
"""Calculate the fluence of a beam.
Parameters
----------
power_mW : number
Time integrated p... | [
"def",
"fluence",
"(",
"power_mW",
",",
"color",
",",
"beam_radius",
",",
"reprate_Hz",
",",
"pulse_width",
",",
"color_units",
"=",
"\"wn\"",
",",
"beam_radius_units",
"=",
"\"mm\"",
",",
"pulse_width_units",
"=",
"\"fs_t\"",
",",
"area_type",
"=",
"\"even\"",
... | Calculate the fluence of a beam.
Parameters
----------
power_mW : number
Time integrated power of beam.
color : number
Color of beam in units.
beam_radius : number
Radius of beam in units.
reprate_Hz : number
Laser repetition rate in inverse seconds (Hz).
pul... | [
"Calculate",
"the",
"fluence",
"of",
"a",
"beam",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_calculate.py#L20-L88 | train |
wright-group/WrightTools | WrightTools/kit/_calculate.py | mono_resolution | def mono_resolution(
grooves_per_mm, slit_width, focal_length, output_color, output_units="wn"
) -> float:
"""Calculate the resolution of a monochromator.
Parameters
----------
grooves_per_mm : number
Grooves per millimeter.
slit_width : number
Slit width in microns.
focal_l... | python | def mono_resolution(
grooves_per_mm, slit_width, focal_length, output_color, output_units="wn"
) -> float:
"""Calculate the resolution of a monochromator.
Parameters
----------
grooves_per_mm : number
Grooves per millimeter.
slit_width : number
Slit width in microns.
focal_l... | [
"def",
"mono_resolution",
"(",
"grooves_per_mm",
",",
"slit_width",
",",
"focal_length",
",",
"output_color",
",",
"output_units",
"=",
"\"wn\"",
")",
"->",
"float",
":",
"d_lambda",
"=",
"1e6",
"*",
"slit_width",
"/",
"(",
"grooves_per_mm",
"*",
"focal_length",... | Calculate the resolution of a monochromator.
Parameters
----------
grooves_per_mm : number
Grooves per millimeter.
slit_width : number
Slit width in microns.
focal_length : number
Focal length in mm.
output_color : number
Output color in nm.
output_units : st... | [
"Calculate",
"the",
"resolution",
"of",
"a",
"monochromator",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_calculate.py#L91-L120 | train |
wright-group/WrightTools | WrightTools/kit/_calculate.py | nm_width | def nm_width(center, width, units="wn") -> float:
"""Given a center and width, in energy units, get back a width in nm.
Parameters
----------
center : number
Center (in energy units).
width : number
Width (in energy units).
units : string (optional)
Input units. Default ... | python | def nm_width(center, width, units="wn") -> float:
"""Given a center and width, in energy units, get back a width in nm.
Parameters
----------
center : number
Center (in energy units).
width : number
Width (in energy units).
units : string (optional)
Input units. Default ... | [
"def",
"nm_width",
"(",
"center",
",",
"width",
",",
"units",
"=",
"\"wn\"",
")",
"->",
"float",
":",
"red",
"=",
"wt_units",
".",
"converter",
"(",
"center",
"-",
"width",
"/",
"2.",
",",
"units",
",",
"\"nm\"",
")",
"blue",
"=",
"wt_units",
".",
... | Given a center and width, in energy units, get back a width in nm.
Parameters
----------
center : number
Center (in energy units).
width : number
Width (in energy units).
units : string (optional)
Input units. Default is wn.
Returns
-------
number
Width ... | [
"Given",
"a",
"center",
"and",
"width",
"in",
"energy",
"units",
"get",
"back",
"a",
"width",
"in",
"nm",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_calculate.py#L123-L142 | train |
wright-group/WrightTools | WrightTools/diagrams/WMEL.py | Subplot.add_arrow | def add_arrow(
self,
index,
between,
kind,
label="",
head_length=0.1,
head_aspect=2,
font_size=14,
color="k",
):
"""Add an arrow to the WMEL diagram.
Parameters
----------
index : integer
The interac... | python | def add_arrow(
self,
index,
between,
kind,
label="",
head_length=0.1,
head_aspect=2,
font_size=14,
color="k",
):
"""Add an arrow to the WMEL diagram.
Parameters
----------
index : integer
The interac... | [
"def",
"add_arrow",
"(",
"self",
",",
"index",
",",
"between",
",",
"kind",
",",
"label",
"=",
"\"\"",
",",
"head_length",
"=",
"0.1",
",",
"head_aspect",
"=",
"2",
",",
"font_size",
"=",
"14",
",",
"color",
"=",
"\"k\"",
",",
")",
":",
"if",
"hasa... | Add an arrow to the WMEL diagram.
Parameters
----------
index : integer
The interaction, or start and stop interaction for the arrow.
between : 2-element iterable of integers
The inital and final state of the arrow
kind : {'ket', 'bra'}
The ki... | [
"Add",
"an",
"arrow",
"to",
"the",
"WMEL",
"diagram",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/diagrams/WMEL.py#L98-L184 | train |
wright-group/WrightTools | WrightTools/diagrams/WMEL.py | Artist.label_rows | def label_rows(self, labels, font_size=15, text_buffer=1.5):
"""Label rows.
Parameters
----------
labels : list of strings
Labels.
font_size : number (optional)
Font size. Default is 15.
text_buffer : number
Buffer around text. Default... | python | def label_rows(self, labels, font_size=15, text_buffer=1.5):
"""Label rows.
Parameters
----------
labels : list of strings
Labels.
font_size : number (optional)
Font size. Default is 15.
text_buffer : number
Buffer around text. Default... | [
"def",
"label_rows",
"(",
"self",
",",
"labels",
",",
"font_size",
"=",
"15",
",",
"text_buffer",
"=",
"1.5",
")",
":",
"for",
"i",
"in",
"range",
"(",
"len",
"(",
"self",
".",
"subplots",
")",
")",
":",
"plot",
"=",
"self",
".",
"subplots",
"[",
... | Label rows.
Parameters
----------
labels : list of strings
Labels.
font_size : number (optional)
Font size. Default is 15.
text_buffer : number
Buffer around text. Default is 1.5. | [
"Label",
"rows",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/diagrams/WMEL.py#L261-L282 | train |
wright-group/WrightTools | WrightTools/diagrams/WMEL.py | Artist.clear_diagram | def clear_diagram(self, diagram):
"""Clear diagram.
Parameters
----------
diagram : [column, row]
Diagram to clear.
"""
plot = self.subplots[diagram[1]][diagram[0]]
plot.cla() | python | def clear_diagram(self, diagram):
"""Clear diagram.
Parameters
----------
diagram : [column, row]
Diagram to clear.
"""
plot = self.subplots[diagram[1]][diagram[0]]
plot.cla() | [
"def",
"clear_diagram",
"(",
"self",
",",
"diagram",
")",
":",
"plot",
"=",
"self",
".",
"subplots",
"[",
"diagram",
"[",
"1",
"]",
"]",
"[",
"diagram",
"[",
"0",
"]",
"]",
"plot",
".",
"cla",
"(",
")"
] | Clear diagram.
Parameters
----------
diagram : [column, row]
Diagram to clear. | [
"Clear",
"diagram",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/diagrams/WMEL.py#L307-L316 | train |
wright-group/WrightTools | WrightTools/diagrams/WMEL.py | Artist.add_arrow | def add_arrow(
self, diagram, number, between, kind, label="", head_length=0.075, font_size=7, color="k"
):
"""Add arrow.
Parameters
----------
diagram : [column, row]
Diagram position.
number : integer
Arrow position.
between : [start... | python | def add_arrow(
self, diagram, number, between, kind, label="", head_length=0.075, font_size=7, color="k"
):
"""Add arrow.
Parameters
----------
diagram : [column, row]
Diagram position.
number : integer
Arrow position.
between : [start... | [
"def",
"add_arrow",
"(",
"self",
",",
"diagram",
",",
"number",
",",
"between",
",",
"kind",
",",
"label",
"=",
"\"\"",
",",
"head_length",
"=",
"0.075",
",",
"font_size",
"=",
"7",
",",
"color",
"=",
"\"k\"",
")",
":",
"column",
",",
"row",
"=",
"... | Add arrow.
Parameters
----------
diagram : [column, row]
Diagram position.
number : integer
Arrow position.
between : [start, stop]
Arrow span.
kind : {'ket', 'bra', 'out'}
Arrow style.
label : string (optional)
... | [
"Add",
"arrow",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/diagrams/WMEL.py#L318-L392 | train |
wright-group/WrightTools | WrightTools/diagrams/WMEL.py | Artist.plot | def plot(self, save_path=None, close=False, bbox_inches="tight", pad_inches=1):
"""Plot figure.
Parameters
----------
save_path : string (optional)
Save path. Default is None.
close : boolean (optional)
Toggle automatic figure closure after plotting.
... | python | def plot(self, save_path=None, close=False, bbox_inches="tight", pad_inches=1):
"""Plot figure.
Parameters
----------
save_path : string (optional)
Save path. Default is None.
close : boolean (optional)
Toggle automatic figure closure after plotting.
... | [
"def",
"plot",
"(",
"self",
",",
"save_path",
"=",
"None",
",",
"close",
"=",
"False",
",",
"bbox_inches",
"=",
"\"tight\"",
",",
"pad_inches",
"=",
"1",
")",
":",
"for",
"plot",
"in",
"self",
".",
"subplots",
".",
"flatten",
"(",
")",
":",
"plot",
... | Plot figure.
Parameters
----------
save_path : string (optional)
Save path. Default is None.
close : boolean (optional)
Toggle automatic figure closure after plotting.
Default is False.
bbox_inches : number (optional)
Bounding box ... | [
"Plot",
"figure",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/diagrams/WMEL.py#L394-L427 | train |
wright-group/WrightTools | WrightTools/collection/_collection.py | Collection.create_collection | def create_collection(self, name="collection", position=None, **kwargs):
"""Create a new child colleciton.
Parameters
----------
name : string
Unique identifier.
position : integer (optional)
Location to insert. Default is None (append).
kwargs
... | python | def create_collection(self, name="collection", position=None, **kwargs):
"""Create a new child colleciton.
Parameters
----------
name : string
Unique identifier.
position : integer (optional)
Location to insert. Default is None (append).
kwargs
... | [
"def",
"create_collection",
"(",
"self",
",",
"name",
"=",
"\"collection\"",
",",
"position",
"=",
"None",
",",
"**",
"kwargs",
")",
":",
"if",
"name",
"in",
"self",
".",
"item_names",
":",
"wt_exceptions",
".",
"ObjectExistsWarning",
".",
"warn",
"(",
"na... | Create a new child colleciton.
Parameters
----------
name : string
Unique identifier.
position : integer (optional)
Location to insert. Default is None (append).
kwargs
Additional arguments to child collection instantiation.
Returns
... | [
"Create",
"a",
"new",
"child",
"colleciton",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/collection/_collection.py#L75-L103 | train |
wright-group/WrightTools | WrightTools/collection/_collection.py | Collection.create_data | def create_data(self, name="data", position=None, **kwargs):
"""Create a new child data.
Parameters
----------
name : string
Unique identifier.
position : integer (optional)
Location to insert. Default is None (append).
kwargs
Addition... | python | def create_data(self, name="data", position=None, **kwargs):
"""Create a new child data.
Parameters
----------
name : string
Unique identifier.
position : integer (optional)
Location to insert. Default is None (append).
kwargs
Addition... | [
"def",
"create_data",
"(",
"self",
",",
"name",
"=",
"\"data\"",
",",
"position",
"=",
"None",
",",
"**",
"kwargs",
")",
":",
"if",
"name",
"in",
"self",
".",
"item_names",
":",
"wt_exceptions",
".",
"ObjectExistsWarning",
".",
"warn",
"(",
"name",
")",
... | Create a new child data.
Parameters
----------
name : string
Unique identifier.
position : integer (optional)
Location to insert. Default is None (append).
kwargs
Additional arguments to child data instantiation.
Returns
-----... | [
"Create",
"a",
"new",
"child",
"data",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/collection/_collection.py#L105-L139 | train |
wright-group/WrightTools | WrightTools/collection/_collection.py | Collection.flush | def flush(self):
"""Ensure contents are written to file."""
for name in self.item_names:
item = self[name]
item.flush()
self.file.flush() | python | def flush(self):
"""Ensure contents are written to file."""
for name in self.item_names:
item = self[name]
item.flush()
self.file.flush() | [
"def",
"flush",
"(",
"self",
")",
":",
"for",
"name",
"in",
"self",
".",
"item_names",
":",
"item",
"=",
"self",
"[",
"name",
"]",
"item",
".",
"flush",
"(",
")",
"self",
".",
"file",
".",
"flush",
"(",
")"
] | Ensure contents are written to file. | [
"Ensure",
"contents",
"are",
"written",
"to",
"file",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/collection/_collection.py#L158-L163 | train |
wright-group/WrightTools | WrightTools/kit/_array.py | closest_pair | def closest_pair(arr, give="indicies"):
"""Find the pair of indices corresponding to the closest elements in an array.
If multiple pairs are equally close, both pairs of indicies are returned.
Optionally returns the closest distance itself.
I am sure that this could be written as a cheaper operation. ... | python | def closest_pair(arr, give="indicies"):
"""Find the pair of indices corresponding to the closest elements in an array.
If multiple pairs are equally close, both pairs of indicies are returned.
Optionally returns the closest distance itself.
I am sure that this could be written as a cheaper operation. ... | [
"def",
"closest_pair",
"(",
"arr",
",",
"give",
"=",
"\"indicies\"",
")",
":",
"idxs",
"=",
"[",
"idx",
"for",
"idx",
"in",
"np",
".",
"ndindex",
"(",
"arr",
".",
"shape",
")",
"]",
"outs",
"=",
"[",
"]",
"min_dist",
"=",
"arr",
".",
"max",
"(",
... | Find the pair of indices corresponding to the closest elements in an array.
If multiple pairs are equally close, both pairs of indicies are returned.
Optionally returns the closest distance itself.
I am sure that this could be written as a cheaper operation. I
wrote this as a quick and dirty method be... | [
"Find",
"the",
"pair",
"of",
"indices",
"corresponding",
"to",
"the",
"closest",
"elements",
"in",
"an",
"array",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_array.py#L35-L84 | train |
wright-group/WrightTools | WrightTools/kit/_array.py | diff | def diff(xi, yi, order=1) -> np.ndarray:
"""Take the numerical derivative of a 1D array.
Output is mapped onto the original coordinates using linear interpolation.
Expects monotonic xi values.
Parameters
----------
xi : 1D array-like
Coordinates.
yi : 1D array-like
Values.... | python | def diff(xi, yi, order=1) -> np.ndarray:
"""Take the numerical derivative of a 1D array.
Output is mapped onto the original coordinates using linear interpolation.
Expects monotonic xi values.
Parameters
----------
xi : 1D array-like
Coordinates.
yi : 1D array-like
Values.... | [
"def",
"diff",
"(",
"xi",
",",
"yi",
",",
"order",
"=",
"1",
")",
"->",
"np",
".",
"ndarray",
":",
"yi",
"=",
"np",
".",
"array",
"(",
"yi",
")",
".",
"copy",
"(",
")",
"flip",
"=",
"False",
"if",
"xi",
"[",
"-",
"1",
"]",
"<",
"xi",
"[",... | Take the numerical derivative of a 1D array.
Output is mapped onto the original coordinates using linear interpolation.
Expects monotonic xi values.
Parameters
----------
xi : 1D array-like
Coordinates.
yi : 1D array-like
Values.
order : positive integer (optional)
... | [
"Take",
"the",
"numerical",
"derivative",
"of",
"a",
"1D",
"array",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_array.py#L87-L120 | train |
wright-group/WrightTools | WrightTools/kit/_array.py | fft | def fft(xi, yi, axis=0) -> tuple:
"""Take the 1D FFT of an N-dimensional array and return "sensible" properly shifted arrays.
Parameters
----------
xi : numpy.ndarray
1D array over which the points to be FFT'ed are defined
yi : numpy.ndarray
ND array with values to FFT
axis : in... | python | def fft(xi, yi, axis=0) -> tuple:
"""Take the 1D FFT of an N-dimensional array and return "sensible" properly shifted arrays.
Parameters
----------
xi : numpy.ndarray
1D array over which the points to be FFT'ed are defined
yi : numpy.ndarray
ND array with values to FFT
axis : in... | [
"def",
"fft",
"(",
"xi",
",",
"yi",
",",
"axis",
"=",
"0",
")",
"->",
"tuple",
":",
"if",
"xi",
".",
"ndim",
"!=",
"1",
":",
"raise",
"wt_exceptions",
".",
"DimensionalityError",
"(",
"1",
",",
"xi",
".",
"ndim",
")",
"spacing",
"=",
"np",
".",
... | Take the 1D FFT of an N-dimensional array and return "sensible" properly shifted arrays.
Parameters
----------
xi : numpy.ndarray
1D array over which the points to be FFT'ed are defined
yi : numpy.ndarray
ND array with values to FFT
axis : int
axis of yi to perform FFT over
... | [
"Take",
"the",
"1D",
"FFT",
"of",
"an",
"N",
"-",
"dimensional",
"array",
"and",
"return",
"sensible",
"properly",
"shifted",
"arrays",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_array.py#L123-L157 | train |
wright-group/WrightTools | WrightTools/kit/_array.py | joint_shape | def joint_shape(*args) -> tuple:
"""Given a set of arrays, return the joint shape.
Parameters
----------
args : array-likes
Returns
-------
tuple of int
Joint shape.
"""
if len(args) == 0:
return ()
shape = []
shapes = [a.shape for a in args]
ndim = args... | python | def joint_shape(*args) -> tuple:
"""Given a set of arrays, return the joint shape.
Parameters
----------
args : array-likes
Returns
-------
tuple of int
Joint shape.
"""
if len(args) == 0:
return ()
shape = []
shapes = [a.shape for a in args]
ndim = args... | [
"def",
"joint_shape",
"(",
"*",
"args",
")",
"->",
"tuple",
":",
"if",
"len",
"(",
"args",
")",
"==",
"0",
":",
"return",
"(",
")",
"shape",
"=",
"[",
"]",
"shapes",
"=",
"[",
"a",
".",
"shape",
"for",
"a",
"in",
"args",
"]",
"ndim",
"=",
"ar... | Given a set of arrays, return the joint shape.
Parameters
----------
args : array-likes
Returns
-------
tuple of int
Joint shape. | [
"Given",
"a",
"set",
"of",
"arrays",
"return",
"the",
"joint",
"shape",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_array.py#L160-L179 | train |
wright-group/WrightTools | WrightTools/kit/_array.py | orthogonal | def orthogonal(*args) -> bool:
"""Determine if a set of arrays are orthogonal.
Parameters
----------
args : array-likes or array shapes
Returns
-------
bool
Array orthogonality condition.
"""
for i, arg in enumerate(args):
if hasattr(arg, "shape"):
args[... | python | def orthogonal(*args) -> bool:
"""Determine if a set of arrays are orthogonal.
Parameters
----------
args : array-likes or array shapes
Returns
-------
bool
Array orthogonality condition.
"""
for i, arg in enumerate(args):
if hasattr(arg, "shape"):
args[... | [
"def",
"orthogonal",
"(",
"*",
"args",
")",
"->",
"bool",
":",
"for",
"i",
",",
"arg",
"in",
"enumerate",
"(",
"args",
")",
":",
"if",
"hasattr",
"(",
"arg",
",",
"\"shape\"",
")",
":",
"args",
"[",
"i",
"]",
"=",
"arg",
".",
"shape",
"for",
"s... | Determine if a set of arrays are orthogonal.
Parameters
----------
args : array-likes or array shapes
Returns
-------
bool
Array orthogonality condition. | [
"Determine",
"if",
"a",
"set",
"of",
"arrays",
"are",
"orthogonal",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_array.py#L182-L200 | train |
wright-group/WrightTools | WrightTools/kit/_array.py | remove_nans_1D | def remove_nans_1D(*args) -> tuple:
"""Remove nans in a set of 1D arrays.
Removes indicies in all arrays if any array is nan at that index.
All input arrays must have the same size.
Parameters
----------
args : 1D arrays
Returns
-------
tuple
Tuple of 1D arrays in same ord... | python | def remove_nans_1D(*args) -> tuple:
"""Remove nans in a set of 1D arrays.
Removes indicies in all arrays if any array is nan at that index.
All input arrays must have the same size.
Parameters
----------
args : 1D arrays
Returns
-------
tuple
Tuple of 1D arrays in same ord... | [
"def",
"remove_nans_1D",
"(",
"*",
"args",
")",
"->",
"tuple",
":",
"vals",
"=",
"np",
".",
"isnan",
"(",
"args",
"[",
"0",
"]",
")",
"for",
"a",
"in",
"args",
":",
"vals",
"|=",
"np",
".",
"isnan",
"(",
"a",
")",
"return",
"tuple",
"(",
"np",
... | Remove nans in a set of 1D arrays.
Removes indicies in all arrays if any array is nan at that index.
All input arrays must have the same size.
Parameters
----------
args : 1D arrays
Returns
-------
tuple
Tuple of 1D arrays in same order as given, with nan indicies removed. | [
"Remove",
"nans",
"in",
"a",
"set",
"of",
"1D",
"arrays",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_array.py#L203-L221 | train |
wright-group/WrightTools | WrightTools/kit/_array.py | share_nans | def share_nans(*arrs) -> tuple:
"""Take a list of nD arrays and return a new list of nD arrays.
The new list is in the same order as the old list.
If one indexed element in an old array is nan then every element for that
index in all new arrays in the list is then nan.
Parameters
----------
... | python | def share_nans(*arrs) -> tuple:
"""Take a list of nD arrays and return a new list of nD arrays.
The new list is in the same order as the old list.
If one indexed element in an old array is nan then every element for that
index in all new arrays in the list is then nan.
Parameters
----------
... | [
"def",
"share_nans",
"(",
"*",
"arrs",
")",
"->",
"tuple",
":",
"nans",
"=",
"np",
".",
"zeros",
"(",
"joint_shape",
"(",
"*",
"arrs",
")",
")",
"for",
"arr",
"in",
"arrs",
":",
"nans",
"*=",
"arr",
"return",
"tuple",
"(",
"[",
"a",
"+",
"nans",
... | Take a list of nD arrays and return a new list of nD arrays.
The new list is in the same order as the old list.
If one indexed element in an old array is nan then every element for that
index in all new arrays in the list is then nan.
Parameters
----------
*arrs : nD arrays.
Returns
-... | [
"Take",
"a",
"list",
"of",
"nD",
"arrays",
"and",
"return",
"a",
"new",
"list",
"of",
"nD",
"arrays",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_array.py#L224-L243 | train |
wright-group/WrightTools | WrightTools/kit/_array.py | smooth_1D | def smooth_1D(arr, n=10, smooth_type="flat") -> np.ndarray:
"""Smooth 1D data using a window function.
Edge effects will be present.
Parameters
----------
arr : array_like
Input array, 1D.
n : int (optional)
Window length.
smooth_type : {'flat', 'hanning', 'hamming', '... | python | def smooth_1D(arr, n=10, smooth_type="flat") -> np.ndarray:
"""Smooth 1D data using a window function.
Edge effects will be present.
Parameters
----------
arr : array_like
Input array, 1D.
n : int (optional)
Window length.
smooth_type : {'flat', 'hanning', 'hamming', '... | [
"def",
"smooth_1D",
"(",
"arr",
",",
"n",
"=",
"10",
",",
"smooth_type",
"=",
"\"flat\"",
")",
"->",
"np",
".",
"ndarray",
":",
"if",
"arr",
".",
"ndim",
"!=",
"1",
":",
"raise",
"wt_exceptions",
".",
"DimensionalityError",
"(",
"1",
",",
"arr",
".",... | Smooth 1D data using a window function.
Edge effects will be present.
Parameters
----------
arr : array_like
Input array, 1D.
n : int (optional)
Window length.
smooth_type : {'flat', 'hanning', 'hamming', 'bartlett', 'blackman'} (optional)
Type of window function t... | [
"Smooth",
"1D",
"data",
"using",
"a",
"window",
"function",
".",
"Edge",
"effects",
"will",
"be",
"present",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_array.py#L246-L291 | train |
wright-group/WrightTools | WrightTools/kit/_array.py | svd | def svd(a, i=None) -> tuple:
"""Singular Value Decomposition.
Factors the matrix `a` as ``u * np.diag(s) * v``, where `u` and `v`
are unitary and `s` is a 1D array of `a`'s singular values.
Parameters
----------
a : array_like
Input array.
i : int or slice (optional)
What s... | python | def svd(a, i=None) -> tuple:
"""Singular Value Decomposition.
Factors the matrix `a` as ``u * np.diag(s) * v``, where `u` and `v`
are unitary and `s` is a 1D array of `a`'s singular values.
Parameters
----------
a : array_like
Input array.
i : int or slice (optional)
What s... | [
"def",
"svd",
"(",
"a",
",",
"i",
"=",
"None",
")",
"->",
"tuple",
":",
"u",
",",
"s",
",",
"v",
"=",
"np",
".",
"linalg",
".",
"svd",
"(",
"a",
",",
"full_matrices",
"=",
"False",
",",
"compute_uv",
"=",
"True",
")",
"u",
"=",
"u",
".",
"T... | Singular Value Decomposition.
Factors the matrix `a` as ``u * np.diag(s) * v``, where `u` and `v`
are unitary and `s` is a 1D array of `a`'s singular values.
Parameters
----------
a : array_like
Input array.
i : int or slice (optional)
What singular value "slice" to return.
... | [
"Singular",
"Value",
"Decomposition",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_array.py#L294-L318 | train |
wright-group/WrightTools | WrightTools/kit/_array.py | unique | def unique(arr, tolerance=1e-6) -> np.ndarray:
"""Return unique elements in 1D array, within tolerance.
Parameters
----------
arr : array_like
Input array. This will be flattened if it is not already 1D.
tolerance : number (optional)
The tolerance for uniqueness.
Returns
--... | python | def unique(arr, tolerance=1e-6) -> np.ndarray:
"""Return unique elements in 1D array, within tolerance.
Parameters
----------
arr : array_like
Input array. This will be flattened if it is not already 1D.
tolerance : number (optional)
The tolerance for uniqueness.
Returns
--... | [
"def",
"unique",
"(",
"arr",
",",
"tolerance",
"=",
"1e-6",
")",
"->",
"np",
".",
"ndarray",
":",
"arr",
"=",
"sorted",
"(",
"arr",
".",
"flatten",
"(",
")",
")",
"unique",
"=",
"[",
"]",
"while",
"len",
"(",
"arr",
")",
">",
"0",
":",
"current... | Return unique elements in 1D array, within tolerance.
Parameters
----------
arr : array_like
Input array. This will be flattened if it is not already 1D.
tolerance : number (optional)
The tolerance for uniqueness.
Returns
-------
array
The sorted unique values. | [
"Return",
"unique",
"elements",
"in",
"1D",
"array",
"within",
"tolerance",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_array.py#L321-L344 | train |
wright-group/WrightTools | WrightTools/kit/_array.py | valid_index | def valid_index(index, shape) -> tuple:
"""Get a valid index for a broadcastable shape.
Parameters
----------
index : tuple
Given index.
shape : tuple of int
Shape.
Returns
-------
tuple
Valid index.
"""
# append slices to index
index = list(index)
... | python | def valid_index(index, shape) -> tuple:
"""Get a valid index for a broadcastable shape.
Parameters
----------
index : tuple
Given index.
shape : tuple of int
Shape.
Returns
-------
tuple
Valid index.
"""
# append slices to index
index = list(index)
... | [
"def",
"valid_index",
"(",
"index",
",",
"shape",
")",
"->",
"tuple",
":",
"index",
"=",
"list",
"(",
"index",
")",
"while",
"len",
"(",
"index",
")",
"<",
"len",
"(",
"shape",
")",
":",
"index",
".",
"append",
"(",
"slice",
"(",
"None",
")",
")"... | Get a valid index for a broadcastable shape.
Parameters
----------
index : tuple
Given index.
shape : tuple of int
Shape.
Returns
-------
tuple
Valid index. | [
"Get",
"a",
"valid",
"index",
"for",
"a",
"broadcastable",
"shape",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_array.py#L347-L376 | train |
wright-group/WrightTools | WrightTools/kit/_array.py | mask_reduce | def mask_reduce(mask):
"""Reduce a boolean mask, removing all false slices in any dimension.
Parameters
----------
mask : ndarray with bool dtype
The mask which is to be reduced
Returns
-------
A boolean mask with no all False slices.
"""
mask = mask.copy()
for i in... | python | def mask_reduce(mask):
"""Reduce a boolean mask, removing all false slices in any dimension.
Parameters
----------
mask : ndarray with bool dtype
The mask which is to be reduced
Returns
-------
A boolean mask with no all False slices.
"""
mask = mask.copy()
for i in... | [
"def",
"mask_reduce",
"(",
"mask",
")",
":",
"mask",
"=",
"mask",
".",
"copy",
"(",
")",
"for",
"i",
"in",
"range",
"(",
"len",
"(",
"mask",
".",
"shape",
")",
")",
":",
"a",
"=",
"mask",
".",
"copy",
"(",
")",
"j",
"=",
"list",
"(",
"range",... | Reduce a boolean mask, removing all false slices in any dimension.
Parameters
----------
mask : ndarray with bool dtype
The mask which is to be reduced
Returns
-------
A boolean mask with no all False slices. | [
"Reduce",
"a",
"boolean",
"mask",
"removing",
"all",
"false",
"slices",
"in",
"any",
"dimension",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_array.py#L379-L402 | train |
wright-group/WrightTools | WrightTools/kit/_array.py | enforce_mask_shape | def enforce_mask_shape(mask, shape):
"""Reduce a boolean mask to fit a given shape.
Parameters
----------
mask : ndarray with bool dtype
The mask which is to be reduced
shape : tuple of int
Shape which broadcasts to the mask shape.
Returns
-------
A boolean mask, co... | python | def enforce_mask_shape(mask, shape):
"""Reduce a boolean mask to fit a given shape.
Parameters
----------
mask : ndarray with bool dtype
The mask which is to be reduced
shape : tuple of int
Shape which broadcasts to the mask shape.
Returns
-------
A boolean mask, co... | [
"def",
"enforce_mask_shape",
"(",
"mask",
",",
"shape",
")",
":",
"red",
"=",
"tuple",
"(",
"[",
"i",
"for",
"i",
"in",
"range",
"(",
"len",
"(",
"shape",
")",
")",
"if",
"shape",
"[",
"i",
"]",
"==",
"1",
"]",
")",
"return",
"mask",
".",
"max"... | Reduce a boolean mask to fit a given shape.
Parameters
----------
mask : ndarray with bool dtype
The mask which is to be reduced
shape : tuple of int
Shape which broadcasts to the mask shape.
Returns
-------
A boolean mask, collapsed along axes where the shape given has... | [
"Reduce",
"a",
"boolean",
"mask",
"to",
"fit",
"a",
"given",
"shape",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_array.py#L405-L420 | train |
wright-group/WrightTools | WrightTools/datasets/__init__.py | DatasetContainer._from_directory | def _from_directory(self, dirname, prefix=""):
"""Add dataset from files in a directory.
Parameters
----------
dirname : string
Directory name.
prefix : string
Prefix.
"""
ps = [os.path.join(here, dirname, p) for p in os.listdir(os.path.jo... | python | def _from_directory(self, dirname, prefix=""):
"""Add dataset from files in a directory.
Parameters
----------
dirname : string
Directory name.
prefix : string
Prefix.
"""
ps = [os.path.join(here, dirname, p) for p in os.listdir(os.path.jo... | [
"def",
"_from_directory",
"(",
"self",
",",
"dirname",
",",
"prefix",
"=",
"\"\"",
")",
":",
"ps",
"=",
"[",
"os",
".",
"path",
".",
"join",
"(",
"here",
",",
"dirname",
",",
"p",
")",
"for",
"p",
"in",
"os",
".",
"listdir",
"(",
"os",
".",
"pa... | Add dataset from files in a directory.
Parameters
----------
dirname : string
Directory name.
prefix : string
Prefix. | [
"Add",
"dataset",
"from",
"files",
"in",
"a",
"directory",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/datasets/__init__.py#L37-L49 | train |
wright-group/WrightTools | WrightTools/kit/_utilities.py | string2identifier | def string2identifier(s):
"""Turn a string into a valid python identifier.
Currently only allows ASCII letters and underscore. Illegal characters
are replaced with underscore. This is slightly more opinionated than
python 3 itself, and may be refactored in future (see PEP 3131).
Parameters
---... | python | def string2identifier(s):
"""Turn a string into a valid python identifier.
Currently only allows ASCII letters and underscore. Illegal characters
are replaced with underscore. This is slightly more opinionated than
python 3 itself, and may be refactored in future (see PEP 3131).
Parameters
---... | [
"def",
"string2identifier",
"(",
"s",
")",
":",
"if",
"len",
"(",
"s",
")",
"==",
"0",
":",
"return",
"\"_\"",
"if",
"s",
"[",
"0",
"]",
"not",
"in",
"string",
".",
"ascii_letters",
":",
"s",
"=",
"\"_\"",
"+",
"s",
"valids",
"=",
"string",
".",
... | Turn a string into a valid python identifier.
Currently only allows ASCII letters and underscore. Illegal characters
are replaced with underscore. This is slightly more opinionated than
python 3 itself, and may be refactored in future (see PEP 3131).
Parameters
----------
s : string
st... | [
"Turn",
"a",
"string",
"into",
"a",
"valid",
"python",
"identifier",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_utilities.py#L20-L50 | train |
wright-group/WrightTools | WrightTools/units.py | converter | def converter(val, current_unit, destination_unit):
"""Convert from one unit to another.
Parameters
----------
val : number
Number to convert.
current_unit : string
Current unit.
destination_unit : string
Destination unit.
Returns
-------
number
Conv... | python | def converter(val, current_unit, destination_unit):
"""Convert from one unit to another.
Parameters
----------
val : number
Number to convert.
current_unit : string
Current unit.
destination_unit : string
Destination unit.
Returns
-------
number
Conv... | [
"def",
"converter",
"(",
"val",
",",
"current_unit",
",",
"destination_unit",
")",
":",
"x",
"=",
"val",
"for",
"dic",
"in",
"dicts",
".",
"values",
"(",
")",
":",
"if",
"current_unit",
"in",
"dic",
".",
"keys",
"(",
")",
"and",
"destination_unit",
"in... | Convert from one unit to another.
Parameters
----------
val : number
Number to convert.
current_unit : string
Current unit.
destination_unit : string
Destination unit.
Returns
-------
number
Converted value. | [
"Convert",
"from",
"one",
"unit",
"to",
"another",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/units.py#L96-L135 | train |
wright-group/WrightTools | WrightTools/units.py | get_symbol | def get_symbol(units) -> str:
"""Get default symbol type.
Parameters
----------
units_str : string
Units.
Returns
-------
string
LaTeX formatted symbol.
"""
if kind(units) == "energy":
d = {}
d["nm"] = r"\lambda"
d["wn"] = r"\bar\nu"
... | python | def get_symbol(units) -> str:
"""Get default symbol type.
Parameters
----------
units_str : string
Units.
Returns
-------
string
LaTeX formatted symbol.
"""
if kind(units) == "energy":
d = {}
d["nm"] = r"\lambda"
d["wn"] = r"\bar\nu"
... | [
"def",
"get_symbol",
"(",
"units",
")",
"->",
"str",
":",
"if",
"kind",
"(",
"units",
")",
"==",
"\"energy\"",
":",
"d",
"=",
"{",
"}",
"d",
"[",
"\"nm\"",
"]",
"=",
"r\"\\lambda\"",
"d",
"[",
"\"wn\"",
"]",
"=",
"r\"\\bar\\nu\"",
"d",
"[",
"\"eV\"... | Get default symbol type.
Parameters
----------
units_str : string
Units.
Returns
-------
string
LaTeX formatted symbol. | [
"Get",
"default",
"symbol",
"type",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/units.py#L141-L172 | train |
wright-group/WrightTools | WrightTools/units.py | kind | def kind(units):
"""Find the kind of given units.
Parameters
----------
units : string
The units of interest
Returns
-------
string
The kind of the given units. If no match is found, returns None.
"""
for k, v in dicts.items():
if units in v.keys():
... | python | def kind(units):
"""Find the kind of given units.
Parameters
----------
units : string
The units of interest
Returns
-------
string
The kind of the given units. If no match is found, returns None.
"""
for k, v in dicts.items():
if units in v.keys():
... | [
"def",
"kind",
"(",
"units",
")",
":",
"for",
"k",
",",
"v",
"in",
"dicts",
".",
"items",
"(",
")",
":",
"if",
"units",
"in",
"v",
".",
"keys",
"(",
")",
":",
"return",
"k"
] | Find the kind of given units.
Parameters
----------
units : string
The units of interest
Returns
-------
string
The kind of the given units. If no match is found, returns None. | [
"Find",
"the",
"kind",
"of",
"given",
"units",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/units.py#L194-L209 | train |
hagenw/sphinxcontrib-katex | sphinxcontrib/katex.py | latex_defs_to_katex_macros | def latex_defs_to_katex_macros(defs):
r'''Converts LaTeX \def statements to KaTeX macros.
This is a helper function that can be used in conf.py to translate your
already specified LaTeX definitions.
https://github.com/Khan/KaTeX#rendering-options, e.g.
`\def \e #1{\mathrm{e}^{#1}}` => `"\\e:" "\\m... | python | def latex_defs_to_katex_macros(defs):
r'''Converts LaTeX \def statements to KaTeX macros.
This is a helper function that can be used in conf.py to translate your
already specified LaTeX definitions.
https://github.com/Khan/KaTeX#rendering-options, e.g.
`\def \e #1{\mathrm{e}^{#1}}` => `"\\e:" "\\m... | [
"def",
"latex_defs_to_katex_macros",
"(",
"defs",
")",
":",
"r",
"defs",
"=",
"defs",
".",
"strip",
"(",
")",
"tmp",
"=",
"[",
"]",
"for",
"line",
"in",
"defs",
".",
"splitlines",
"(",
")",
":",
"line",
"=",
"line",
".",
"strip",
"(",
")",
"line",
... | r'''Converts LaTeX \def statements to KaTeX macros.
This is a helper function that can be used in conf.py to translate your
already specified LaTeX definitions.
https://github.com/Khan/KaTeX#rendering-options, e.g.
`\def \e #1{\mathrm{e}^{#1}}` => `"\\e:" "\\mathrm{e}^{#1}"`'
Example
-------
... | [
"r",
"Converts",
"LaTeX",
"\\",
"def",
"statements",
"to",
"KaTeX",
"macros",
"."
] | 52e235b93a2471df9a7477e04b697e4274399623 | https://github.com/hagenw/sphinxcontrib-katex/blob/52e235b93a2471df9a7477e04b697e4274399623/sphinxcontrib/katex.py#L32-L68 | train |
hagenw/sphinxcontrib-katex | sphinxcontrib/katex.py | katex_rendering_delimiters | def katex_rendering_delimiters(app):
"""Delimiters for rendering KaTeX math.
If no delimiters are specified in katex_options, add the
katex_inline and katex_display delimiters. See also
https://khan.github.io/KaTeX/docs/autorender.html
"""
# Return if we have user defined rendering delimiters
... | python | def katex_rendering_delimiters(app):
"""Delimiters for rendering KaTeX math.
If no delimiters are specified in katex_options, add the
katex_inline and katex_display delimiters. See also
https://khan.github.io/KaTeX/docs/autorender.html
"""
# Return if we have user defined rendering delimiters
... | [
"def",
"katex_rendering_delimiters",
"(",
"app",
")",
":",
"if",
"'delimiters'",
"in",
"app",
".",
"config",
".",
"katex_options",
":",
"return",
"''",
"katex_inline",
"=",
"[",
"d",
".",
"replace",
"(",
"'\\\\'",
",",
"'\\\\\\\\'",
")",
"for",
"d",
"in",
... | Delimiters for rendering KaTeX math.
If no delimiters are specified in katex_options, add the
katex_inline and katex_display delimiters. See also
https://khan.github.io/KaTeX/docs/autorender.html | [
"Delimiters",
"for",
"rendering",
"KaTeX",
"math",
"."
] | 52e235b93a2471df9a7477e04b697e4274399623 | https://github.com/hagenw/sphinxcontrib-katex/blob/52e235b93a2471df9a7477e04b697e4274399623/sphinxcontrib/katex.py#L159-L177 | train |
wright-group/WrightTools | WrightTools/data/_axis.py | Axis.label | def label(self) -> str:
"""A latex formatted label representing axis expression."""
label = self.expression.replace("_", "\\;")
if self.units_kind:
symbol = wt_units.get_symbol(self.units)
for v in self.variables:
vl = "%s_{%s}" % (symbol, v.label)
... | python | def label(self) -> str:
"""A latex formatted label representing axis expression."""
label = self.expression.replace("_", "\\;")
if self.units_kind:
symbol = wt_units.get_symbol(self.units)
for v in self.variables:
vl = "%s_{%s}" % (symbol, v.label)
... | [
"def",
"label",
"(",
"self",
")",
"->",
"str",
":",
"label",
"=",
"self",
".",
"expression",
".",
"replace",
"(",
"\"_\"",
",",
"\"\\\\;\"",
")",
"if",
"self",
".",
"units_kind",
":",
"symbol",
"=",
"wt_units",
".",
"get_symbol",
"(",
"self",
".",
"u... | A latex formatted label representing axis expression. | [
"A",
"latex",
"formatted",
"label",
"representing",
"axis",
"expression",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_axis.py#L94-L109 | train |
wright-group/WrightTools | WrightTools/data/_axis.py | Axis.natural_name | def natural_name(self) -> str:
"""Valid python identifier representation of the expession."""
name = self.expression.strip()
for op in operators:
name = name.replace(op, operator_to_identifier[op])
return wt_kit.string2identifier(name) | python | def natural_name(self) -> str:
"""Valid python identifier representation of the expession."""
name = self.expression.strip()
for op in operators:
name = name.replace(op, operator_to_identifier[op])
return wt_kit.string2identifier(name) | [
"def",
"natural_name",
"(",
"self",
")",
"->",
"str",
":",
"name",
"=",
"self",
".",
"expression",
".",
"strip",
"(",
")",
"for",
"op",
"in",
"operators",
":",
"name",
"=",
"name",
".",
"replace",
"(",
"op",
",",
"operator_to_identifier",
"[",
"op",
... | Valid python identifier representation of the expession. | [
"Valid",
"python",
"identifier",
"representation",
"of",
"the",
"expession",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_axis.py#L112-L117 | train |
wright-group/WrightTools | WrightTools/data/_axis.py | Axis.masked | def masked(self) -> np.ndarray:
"""Axis expression evaluated, and masked with NaN shared from data channels."""
arr = self[:]
arr.shape = self.shape
arr = wt_kit.share_nans(arr, *self.parent.channels)[0]
return np.nanmean(
arr, keepdims=True, axis=tuple(i for i in ran... | python | def masked(self) -> np.ndarray:
"""Axis expression evaluated, and masked with NaN shared from data channels."""
arr = self[:]
arr.shape = self.shape
arr = wt_kit.share_nans(arr, *self.parent.channels)[0]
return np.nanmean(
arr, keepdims=True, axis=tuple(i for i in ran... | [
"def",
"masked",
"(",
"self",
")",
"->",
"np",
".",
"ndarray",
":",
"arr",
"=",
"self",
"[",
":",
"]",
"arr",
".",
"shape",
"=",
"self",
".",
"shape",
"arr",
"=",
"wt_kit",
".",
"share_nans",
"(",
"arr",
",",
"*",
"self",
".",
"parent",
".",
"c... | Axis expression evaluated, and masked with NaN shared from data channels. | [
"Axis",
"expression",
"evaluated",
"and",
"masked",
"with",
"NaN",
"shared",
"from",
"data",
"channels",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_axis.py#L166-L173 | train |
wright-group/WrightTools | WrightTools/data/_axis.py | Axis.convert | def convert(self, destination_units, *, convert_variables=False):
"""Convert axis to destination_units.
Parameters
----------
destination_units : string
Destination units.
convert_variables : boolean (optional)
Toggle conversion of stored arrays. Default ... | python | def convert(self, destination_units, *, convert_variables=False):
"""Convert axis to destination_units.
Parameters
----------
destination_units : string
Destination units.
convert_variables : boolean (optional)
Toggle conversion of stored arrays. Default ... | [
"def",
"convert",
"(",
"self",
",",
"destination_units",
",",
"*",
",",
"convert_variables",
"=",
"False",
")",
":",
"if",
"self",
".",
"units",
"is",
"None",
"and",
"(",
"destination_units",
"is",
"None",
"or",
"destination_units",
"==",
"\"None\"",
")",
... | Convert axis to destination_units.
Parameters
----------
destination_units : string
Destination units.
convert_variables : boolean (optional)
Toggle conversion of stored arrays. Default is False. | [
"Convert",
"axis",
"to",
"destination_units",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_axis.py#L175-L193 | train |
wright-group/WrightTools | WrightTools/kit/_ini.py | INI.add_section | def add_section(self, section):
"""Add section.
Parameters
----------
section : string
Section to add.
"""
self.config.read(self.filepath)
self.config.add_section(section)
with open(self.filepath, "w") as f:
self.config.write(f) | python | def add_section(self, section):
"""Add section.
Parameters
----------
section : string
Section to add.
"""
self.config.read(self.filepath)
self.config.add_section(section)
with open(self.filepath, "w") as f:
self.config.write(f) | [
"def",
"add_section",
"(",
"self",
",",
"section",
")",
":",
"self",
".",
"config",
".",
"read",
"(",
"self",
".",
"filepath",
")",
"self",
".",
"config",
".",
"add_section",
"(",
"section",
")",
"with",
"open",
"(",
"self",
".",
"filepath",
",",
"\"... | Add section.
Parameters
----------
section : string
Section to add. | [
"Add",
"section",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_ini.py#L35-L46 | train |
wright-group/WrightTools | WrightTools/kit/_ini.py | INI.dictionary | def dictionary(self) -> dict:
"""Get a python dictionary of contents."""
self.config.read(self.filepath)
return self.config._sections | python | def dictionary(self) -> dict:
"""Get a python dictionary of contents."""
self.config.read(self.filepath)
return self.config._sections | [
"def",
"dictionary",
"(",
"self",
")",
"->",
"dict",
":",
"self",
".",
"config",
".",
"read",
"(",
"self",
".",
"filepath",
")",
"return",
"self",
".",
"config",
".",
"_sections"
] | Get a python dictionary of contents. | [
"Get",
"a",
"python",
"dictionary",
"of",
"contents",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_ini.py#L58-L61 | train |
wright-group/WrightTools | WrightTools/kit/_ini.py | INI.has_option | def has_option(self, section, option) -> bool:
"""Test if file has option.
Parameters
----------
section : string
Section.
option : string
Option.
Returns
-------
boolean
"""
self.config.read(self.filepath)
... | python | def has_option(self, section, option) -> bool:
"""Test if file has option.
Parameters
----------
section : string
Section.
option : string
Option.
Returns
-------
boolean
"""
self.config.read(self.filepath)
... | [
"def",
"has_option",
"(",
"self",
",",
"section",
",",
"option",
")",
"->",
"bool",
":",
"self",
".",
"config",
".",
"read",
"(",
"self",
".",
"filepath",
")",
"return",
"self",
".",
"config",
".",
"has_option",
"(",
"section",
",",
"option",
")"
] | Test if file has option.
Parameters
----------
section : string
Section.
option : string
Option.
Returns
-------
boolean | [
"Test",
"if",
"file",
"has",
"option",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_ini.py#L78-L93 | train |
wright-group/WrightTools | WrightTools/kit/_ini.py | INI.has_section | def has_section(self, section) -> bool:
"""Test if file has section.
Parameters
----------
section : string
Section.
Returns
-------
boolean
"""
self.config.read(self.filepath)
return self.config.has_section(section) | python | def has_section(self, section) -> bool:
"""Test if file has section.
Parameters
----------
section : string
Section.
Returns
-------
boolean
"""
self.config.read(self.filepath)
return self.config.has_section(section) | [
"def",
"has_section",
"(",
"self",
",",
"section",
")",
"->",
"bool",
":",
"self",
".",
"config",
".",
"read",
"(",
"self",
".",
"filepath",
")",
"return",
"self",
".",
"config",
".",
"has_section",
"(",
"section",
")"
] | Test if file has section.
Parameters
----------
section : string
Section.
Returns
-------
boolean | [
"Test",
"if",
"file",
"has",
"section",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_ini.py#L95-L108 | train |
wright-group/WrightTools | WrightTools/kit/_ini.py | INI.read | def read(self, section, option):
"""Read from file.
Parameters
----------
section : string
Section.
option : string
Option.
Returns
-------
string
Value.
"""
self.config.read(self.filepath)
raw ... | python | def read(self, section, option):
"""Read from file.
Parameters
----------
section : string
Section.
option : string
Option.
Returns
-------
string
Value.
"""
self.config.read(self.filepath)
raw ... | [
"def",
"read",
"(",
"self",
",",
"section",
",",
"option",
")",
":",
"self",
".",
"config",
".",
"read",
"(",
"self",
".",
"filepath",
")",
"raw",
"=",
"self",
".",
"config",
".",
"get",
"(",
"section",
",",
"option",
")",
"out",
"=",
"tidy_headers... | Read from file.
Parameters
----------
section : string
Section.
option : string
Option.
Returns
-------
string
Value. | [
"Read",
"from",
"file",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_ini.py#L110-L128 | train |
wright-group/WrightTools | WrightTools/kit/_ini.py | INI.sections | def sections(self) -> list:
"""List of sections."""
self.config.read(self.filepath)
return self.config.sections() | python | def sections(self) -> list:
"""List of sections."""
self.config.read(self.filepath)
return self.config.sections() | [
"def",
"sections",
"(",
"self",
")",
"->",
"list",
":",
"self",
".",
"config",
".",
"read",
"(",
"self",
".",
"filepath",
")",
"return",
"self",
".",
"config",
".",
"sections",
"(",
")"
] | List of sections. | [
"List",
"of",
"sections",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_ini.py#L131-L134 | train |
wright-group/WrightTools | WrightTools/kit/_ini.py | INI.write | def write(self, section, option, value):
"""Write to file.
Parameters
----------
section : string
Section.
option : string
Option.
value : string
Value.
"""
self.config.read(self.filepath)
string = tidy_headers.... | python | def write(self, section, option, value):
"""Write to file.
Parameters
----------
section : string
Section.
option : string
Option.
value : string
Value.
"""
self.config.read(self.filepath)
string = tidy_headers.... | [
"def",
"write",
"(",
"self",
",",
"section",
",",
"option",
",",
"value",
")",
":",
"self",
".",
"config",
".",
"read",
"(",
"self",
".",
"filepath",
")",
"string",
"=",
"tidy_headers",
".",
"_parse_item",
".",
"item2string",
"(",
"value",
",",
"sep",
... | Write to file.
Parameters
----------
section : string
Section.
option : string
Option.
value : string
Value. | [
"Write",
"to",
"file",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_ini.py#L136-L152 | train |
wright-group/WrightTools | WrightTools/kit/_timestamp.py | timestamp_from_RFC3339 | def timestamp_from_RFC3339(RFC3339):
"""Generate a Timestamp object from a RFC3339 formatted string.
`Link to RFC3339`__
__ https://www.ietf.org/rfc/rfc3339.txt
Parameters
----------
RFC3339 : string
RFC3339 formatted string.
Returns
-------
WrightTools.kit.TimeStamp
... | python | def timestamp_from_RFC3339(RFC3339):
"""Generate a Timestamp object from a RFC3339 formatted string.
`Link to RFC3339`__
__ https://www.ietf.org/rfc/rfc3339.txt
Parameters
----------
RFC3339 : string
RFC3339 formatted string.
Returns
-------
WrightTools.kit.TimeStamp
... | [
"def",
"timestamp_from_RFC3339",
"(",
"RFC3339",
")",
":",
"dt",
"=",
"dateutil",
".",
"parser",
".",
"parse",
"(",
"RFC3339",
")",
"if",
"hasattr",
"(",
"dt",
".",
"tzinfo",
",",
"\"_offset\"",
")",
":",
"timezone",
"=",
"dt",
".",
"tzinfo",
".",
"_of... | Generate a Timestamp object from a RFC3339 formatted string.
`Link to RFC3339`__
__ https://www.ietf.org/rfc/rfc3339.txt
Parameters
----------
RFC3339 : string
RFC3339 formatted string.
Returns
-------
WrightTools.kit.TimeStamp | [
"Generate",
"a",
"Timestamp",
"object",
"from",
"a",
"RFC3339",
"formatted",
"string",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_timestamp.py#L25-L47 | train |
wright-group/WrightTools | WrightTools/kit/_timestamp.py | TimeStamp.human | def human(self):
"""Human-readable timestamp."""
# get timezone offset
delta_sec = time.timezone
m, s = divmod(delta_sec, 60)
h, m = divmod(m, 60)
# create output
format_string = "%Y-%m-%d %H:%M:%S"
out = self.datetime.strftime(format_string)
retur... | python | def human(self):
"""Human-readable timestamp."""
# get timezone offset
delta_sec = time.timezone
m, s = divmod(delta_sec, 60)
h, m = divmod(m, 60)
# create output
format_string = "%Y-%m-%d %H:%M:%S"
out = self.datetime.strftime(format_string)
retur... | [
"def",
"human",
"(",
"self",
")",
":",
"delta_sec",
"=",
"time",
".",
"timezone",
"m",
",",
"s",
"=",
"divmod",
"(",
"delta_sec",
",",
"60",
")",
"h",
",",
"m",
"=",
"divmod",
"(",
"m",
",",
"60",
")",
"format_string",
"=",
"\"%Y-%m-%d %H:%M:%S\"",
... | Human-readable timestamp. | [
"Human",
"-",
"readable",
"timestamp",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_timestamp.py#L135-L144 | train |
wright-group/WrightTools | WrightTools/kit/_timestamp.py | TimeStamp.path | def path(self):
"""Timestamp for placing into filepaths."""
out = self.datetime.strftime("%Y-%m-%d")
out += " "
ssm = (
self.datetime - self.datetime.replace(hour=0, minute=0, second=0, microsecond=0)
).total_seconds()
out += str(int(ssm)).zfill(5)
ret... | python | def path(self):
"""Timestamp for placing into filepaths."""
out = self.datetime.strftime("%Y-%m-%d")
out += " "
ssm = (
self.datetime - self.datetime.replace(hour=0, minute=0, second=0, microsecond=0)
).total_seconds()
out += str(int(ssm)).zfill(5)
ret... | [
"def",
"path",
"(",
"self",
")",
":",
"out",
"=",
"self",
".",
"datetime",
".",
"strftime",
"(",
"\"%Y-%m-%d\"",
")",
"out",
"+=",
"\" \"",
"ssm",
"=",
"(",
"self",
".",
"datetime",
"-",
"self",
".",
"datetime",
".",
"replace",
"(",
"hour",
"=",
"0... | Timestamp for placing into filepaths. | [
"Timestamp",
"for",
"placing",
"into",
"filepaths",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_timestamp.py#L187-L195 | train |
wright-group/WrightTools | WrightTools/kit/_interpolate.py | zoom2D | def zoom2D(xi, yi, zi, xi_zoom=3., yi_zoom=3., order=3, mode="nearest", cval=0.):
"""Zoom a 2D array, with axes.
Parameters
----------
xi : 1D array
x axis points.
yi : 1D array
y axis points.
zi : 2D array
array values. Shape of (x, y).
xi_zoom : float (optional)
... | python | def zoom2D(xi, yi, zi, xi_zoom=3., yi_zoom=3., order=3, mode="nearest", cval=0.):
"""Zoom a 2D array, with axes.
Parameters
----------
xi : 1D array
x axis points.
yi : 1D array
y axis points.
zi : 2D array
array values. Shape of (x, y).
xi_zoom : float (optional)
... | [
"def",
"zoom2D",
"(",
"xi",
",",
"yi",
",",
"zi",
",",
"xi_zoom",
"=",
"3.",
",",
"yi_zoom",
"=",
"3.",
",",
"order",
"=",
"3",
",",
"mode",
"=",
"\"nearest\"",
",",
"cval",
"=",
"0.",
")",
":",
"xi",
"=",
"ndimage",
".",
"interpolation",
".",
... | Zoom a 2D array, with axes.
Parameters
----------
xi : 1D array
x axis points.
yi : 1D array
y axis points.
zi : 2D array
array values. Shape of (x, y).
xi_zoom : float (optional)
Zoom factor along x axis. Default is 3.
yi_zoom : float (optional)
Zoom... | [
"Zoom",
"a",
"2D",
"array",
"with",
"axes",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_interpolate.py#L24-L50 | train |
wright-group/WrightTools | WrightTools/artists/_base.py | apply_rcparams | def apply_rcparams(kind="fast"):
"""Quickly apply rcparams for given purposes.
Parameters
----------
kind: {'default', 'fast', 'publication'} (optional)
Settings to use. Default is 'fast'.
"""
if kind == "default":
matplotlib.rcdefaults()
elif kind == "fast":
matplot... | python | def apply_rcparams(kind="fast"):
"""Quickly apply rcparams for given purposes.
Parameters
----------
kind: {'default', 'fast', 'publication'} (optional)
Settings to use. Default is 'fast'.
"""
if kind == "default":
matplotlib.rcdefaults()
elif kind == "fast":
matplot... | [
"def",
"apply_rcparams",
"(",
"kind",
"=",
"\"fast\"",
")",
":",
"if",
"kind",
"==",
"\"default\"",
":",
"matplotlib",
".",
"rcdefaults",
"(",
")",
"elif",
"kind",
"==",
"\"fast\"",
":",
"matplotlib",
".",
"rcParams",
"[",
"\"text.usetex\"",
"]",
"=",
"Fal... | Quickly apply rcparams for given purposes.
Parameters
----------
kind: {'default', 'fast', 'publication'} (optional)
Settings to use. Default is 'fast'. | [
"Quickly",
"apply",
"rcparams",
"for",
"given",
"purposes",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/artists/_base.py#L520-L547 | train |
wright-group/WrightTools | WrightTools/artists/_base.py | Axes._apply_labels | def _apply_labels(
self, autolabel="none", xlabel=None, ylabel=None, data=None, channel_index=0
):
"""Apply x and y labels to axes.
Parameters
----------
autolabel : {'none', 'both', 'x', 'y'} (optional)
Label(s) to apply from data. Default is none.
xlabe... | python | def _apply_labels(
self, autolabel="none", xlabel=None, ylabel=None, data=None, channel_index=0
):
"""Apply x and y labels to axes.
Parameters
----------
autolabel : {'none', 'both', 'x', 'y'} (optional)
Label(s) to apply from data. Default is none.
xlabe... | [
"def",
"_apply_labels",
"(",
"self",
",",
"autolabel",
"=",
"\"none\"",
",",
"xlabel",
"=",
"None",
",",
"ylabel",
"=",
"None",
",",
"data",
"=",
"None",
",",
"channel_index",
"=",
"0",
")",
":",
"if",
"autolabel",
"in",
"[",
"\"xy\"",
",",
"\"both\"",... | Apply x and y labels to axes.
Parameters
----------
autolabel : {'none', 'both', 'x', 'y'} (optional)
Label(s) to apply from data. Default is none.
xlabel : string (optional)
x label. Default is None.
ylabel : string (optional)
y label. Defaul... | [
"Apply",
"x",
"and",
"y",
"labels",
"to",
"axes",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/artists/_base.py#L49-L83 | train |
wright-group/WrightTools | WrightTools/artists/_base.py | Axes.add_sideplot | def add_sideplot(self, along, pad=0, height=0.75, ymin=0, ymax=1.1):
"""Add a side axis.
Parameters
----------
along : {'x', 'y'}
Axis to add along.
pad : float (optional)
Side axis pad. Default is 0.
height : float (optional)
Side axi... | python | def add_sideplot(self, along, pad=0, height=0.75, ymin=0, ymax=1.1):
"""Add a side axis.
Parameters
----------
along : {'x', 'y'}
Axis to add along.
pad : float (optional)
Side axis pad. Default is 0.
height : float (optional)
Side axi... | [
"def",
"add_sideplot",
"(",
"self",
",",
"along",
",",
"pad",
"=",
"0",
",",
"height",
"=",
"0.75",
",",
"ymin",
"=",
"0",
",",
"ymax",
"=",
"1.1",
")",
":",
"if",
"hasattr",
"(",
"self",
",",
"\"divider\"",
")",
":",
"divider",
"=",
"self",
".",... | Add a side axis.
Parameters
----------
along : {'x', 'y'}
Axis to add along.
pad : float (optional)
Side axis pad. Default is 0.
height : float (optional)
Side axis height. Default is 0. | [
"Add",
"a",
"side",
"axis",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/artists/_base.py#L192-L227 | train |
wright-group/WrightTools | WrightTools/artists/_base.py | Axes.legend | def legend(self, *args, **kwargs):
"""Add a legend.
Parameters
----------
*args
matplotlib legend args.
*kwargs
matplotlib legend kwargs.
Returns
-------
legend
"""
if "fancybox" not in kwargs.keys():
k... | python | def legend(self, *args, **kwargs):
"""Add a legend.
Parameters
----------
*args
matplotlib legend args.
*kwargs
matplotlib legend kwargs.
Returns
-------
legend
"""
if "fancybox" not in kwargs.keys():
k... | [
"def",
"legend",
"(",
"self",
",",
"*",
"args",
",",
"**",
"kwargs",
")",
":",
"if",
"\"fancybox\"",
"not",
"in",
"kwargs",
".",
"keys",
"(",
")",
":",
"kwargs",
"[",
"\"fancybox\"",
"]",
"=",
"False",
"if",
"\"framealpha\"",
"not",
"in",
"kwargs",
"... | Add a legend.
Parameters
----------
*args
matplotlib legend args.
*kwargs
matplotlib legend kwargs.
Returns
-------
legend | [
"Add",
"a",
"legend",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/artists/_base.py#L327-L345 | train |
wright-group/WrightTools | WrightTools/artists/_base.py | Figure.add_subplot | def add_subplot(self, *args, **kwargs):
"""Add a subplot to the figure.
Parameters
----------
*args
**kwargs
Returns
-------
WrightTools.artists.Axes object
"""
kwargs.setdefault("projection", "wright")
return super().add_subplot(... | python | def add_subplot(self, *args, **kwargs):
"""Add a subplot to the figure.
Parameters
----------
*args
**kwargs
Returns
-------
WrightTools.artists.Axes object
"""
kwargs.setdefault("projection", "wright")
return super().add_subplot(... | [
"def",
"add_subplot",
"(",
"self",
",",
"*",
"args",
",",
"**",
"kwargs",
")",
":",
"kwargs",
".",
"setdefault",
"(",
"\"projection\"",
",",
"\"wright\"",
")",
"return",
"super",
"(",
")",
".",
"add_subplot",
"(",
"*",
"args",
",",
"**",
"kwargs",
")"
... | Add a subplot to the figure.
Parameters
----------
*args
**kwargs
Returns
-------
WrightTools.artists.Axes object | [
"Add",
"a",
"subplot",
"to",
"the",
"figure",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/artists/_base.py#L495-L508 | train |
wright-group/WrightTools | WrightTools/exceptions.py | WrongFileTypeWarning.warn | def warn(filepath, expected):
"""Raise warning.
Parameters
----------
filepath : path-like
Given filepath.
expected : string
Expected file suffix.
"""
filepath = pathlib.Path(filepath)
message = "file {0} has type {1} (expected {2}... | python | def warn(filepath, expected):
"""Raise warning.
Parameters
----------
filepath : path-like
Given filepath.
expected : string
Expected file suffix.
"""
filepath = pathlib.Path(filepath)
message = "file {0} has type {1} (expected {2}... | [
"def",
"warn",
"(",
"filepath",
",",
"expected",
")",
":",
"filepath",
"=",
"pathlib",
".",
"Path",
"(",
"filepath",
")",
"message",
"=",
"\"file {0} has type {1} (expected {2})\"",
".",
"format",
"(",
"filepath",
",",
"filepath",
".",
"suffix",
",",
"expected... | Raise warning.
Parameters
----------
filepath : path-like
Given filepath.
expected : string
Expected file suffix. | [
"Raise",
"warning",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/exceptions.py#L147-L161 | train |
wright-group/WrightTools | WrightTools/data/_data.py | Data.channel_names | def channel_names(self) -> tuple:
"""Channel names."""
if "channel_names" not in self.attrs.keys():
self.attrs["channel_names"] = np.array([], dtype="S")
return tuple(s.decode() for s in self.attrs["channel_names"]) | python | def channel_names(self) -> tuple:
"""Channel names."""
if "channel_names" not in self.attrs.keys():
self.attrs["channel_names"] = np.array([], dtype="S")
return tuple(s.decode() for s in self.attrs["channel_names"]) | [
"def",
"channel_names",
"(",
"self",
")",
"->",
"tuple",
":",
"if",
"\"channel_names\"",
"not",
"in",
"self",
".",
"attrs",
".",
"keys",
"(",
")",
":",
"self",
".",
"attrs",
"[",
"\"channel_names\"",
"]",
"=",
"np",
".",
"array",
"(",
"[",
"]",
",",
... | Channel names. | [
"Channel",
"names",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_data.py#L110-L114 | train |
wright-group/WrightTools | WrightTools/data/_data.py | Data.ndim | def ndim(self) -> int:
"""Get number of dimensions."""
try:
assert self._ndim is not None
except (AssertionError, AttributeError):
if len(self.variables) == 0:
self._ndim = 0
else:
self._ndim = self.variables[0].ndim
fin... | python | def ndim(self) -> int:
"""Get number of dimensions."""
try:
assert self._ndim is not None
except (AssertionError, AttributeError):
if len(self.variables) == 0:
self._ndim = 0
else:
self._ndim = self.variables[0].ndim
fin... | [
"def",
"ndim",
"(",
"self",
")",
"->",
"int",
":",
"try",
":",
"assert",
"self",
".",
"_ndim",
"is",
"not",
"None",
"except",
"(",
"AssertionError",
",",
"AttributeError",
")",
":",
"if",
"len",
"(",
"self",
".",
"variables",
")",
"==",
"0",
":",
"... | Get number of dimensions. | [
"Get",
"number",
"of",
"dimensions",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_data.py#L140-L150 | train |
wright-group/WrightTools | WrightTools/data/_data.py | Data._on_axes_updated | def _on_axes_updated(self):
"""Method to run when axes are changed in any way.
Propagates updated axes properly.
"""
# update attrs
self.attrs["axes"] = [a.identity.encode() for a in self._axes]
# remove old attributes
while len(self._current_axis_identities_in_n... | python | def _on_axes_updated(self):
"""Method to run when axes are changed in any way.
Propagates updated axes properly.
"""
# update attrs
self.attrs["axes"] = [a.identity.encode() for a in self._axes]
# remove old attributes
while len(self._current_axis_identities_in_n... | [
"def",
"_on_axes_updated",
"(",
"self",
")",
":",
"self",
".",
"attrs",
"[",
"\"axes\"",
"]",
"=",
"[",
"a",
".",
"identity",
".",
"encode",
"(",
")",
"for",
"a",
"in",
"self",
".",
"_axes",
"]",
"while",
"len",
"(",
"self",
".",
"_current_axis_ident... | Method to run when axes are changed in any way.
Propagates updated axes properly. | [
"Method",
"to",
"run",
"when",
"axes",
"are",
"changed",
"in",
"any",
"way",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_data.py#L211-L229 | train |
wright-group/WrightTools | WrightTools/data/_data.py | Data._on_constants_updated | def _on_constants_updated(self):
"""Method to run when constants are changed in any way.
Propagates updated constants properly.
"""
# update attrs
self.attrs["constants"] = [a.identity.encode() for a in self._constants] | python | def _on_constants_updated(self):
"""Method to run when constants are changed in any way.
Propagates updated constants properly.
"""
# update attrs
self.attrs["constants"] = [a.identity.encode() for a in self._constants] | [
"def",
"_on_constants_updated",
"(",
"self",
")",
":",
"self",
".",
"attrs",
"[",
"\"constants\"",
"]",
"=",
"[",
"a",
".",
"identity",
".",
"encode",
"(",
")",
"for",
"a",
"in",
"self",
".",
"_constants",
"]"
] | Method to run when constants are changed in any way.
Propagates updated constants properly. | [
"Method",
"to",
"run",
"when",
"constants",
"are",
"changed",
"in",
"any",
"way",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_data.py#L231-L237 | train |
wright-group/WrightTools | WrightTools/data/_data.py | Data.bring_to_front | def bring_to_front(self, channel):
"""Bring a specific channel to the zero-indexed position in channels.
All other channels get pushed back but remain in order.
Parameters
----------
channel : int or str
Channel index or name.
"""
channel_index = wt_... | python | def bring_to_front(self, channel):
"""Bring a specific channel to the zero-indexed position in channels.
All other channels get pushed back but remain in order.
Parameters
----------
channel : int or str
Channel index or name.
"""
channel_index = wt_... | [
"def",
"bring_to_front",
"(",
"self",
",",
"channel",
")",
":",
"channel_index",
"=",
"wt_kit",
".",
"get_index",
"(",
"self",
".",
"channel_names",
",",
"channel",
")",
"new",
"=",
"list",
"(",
"self",
".",
"channel_names",
")",
"new",
".",
"insert",
"(... | Bring a specific channel to the zero-indexed position in channels.
All other channels get pushed back but remain in order.
Parameters
----------
channel : int or str
Channel index or name. | [
"Bring",
"a",
"specific",
"channel",
"to",
"the",
"zero",
"-",
"indexed",
"position",
"in",
"channels",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_data.py#L282-L295 | train |
wright-group/WrightTools | WrightTools/data/_data.py | Data.gradient | def gradient(self, axis, *, channel=0):
"""
Compute the gradient along one axis.
New channels have names ``<channel name>_<axis name>_gradient``.
Parameters
----------
axis : int or str
The axis to differentiate along.
If given as an integer, the... | python | def gradient(self, axis, *, channel=0):
"""
Compute the gradient along one axis.
New channels have names ``<channel name>_<axis name>_gradient``.
Parameters
----------
axis : int or str
The axis to differentiate along.
If given as an integer, the... | [
"def",
"gradient",
"(",
"self",
",",
"axis",
",",
"*",
",",
"channel",
"=",
"0",
")",
":",
"if",
"isinstance",
"(",
"axis",
",",
"int",
")",
":",
"axis_index",
"=",
"axis",
"elif",
"isinstance",
"(",
"axis",
",",
"str",
")",
":",
"index",
"=",
"s... | Compute the gradient along one axis.
New channels have names ``<channel name>_<axis name>_gradient``.
Parameters
----------
axis : int or str
The axis to differentiate along.
If given as an integer, the axis in the underlying array is used,
and unita... | [
"Compute",
"the",
"gradient",
"along",
"one",
"axis",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_data.py#L440-L494 | train |
wright-group/WrightTools | WrightTools/data/_data.py | Data.convert | def convert(self, destination_units, *, convert_variables=False, verbose=True):
"""Convert all compatable axes and constants to given units.
Parameters
----------
destination_units : str
Destination units.
convert_variables : boolean (optional)
Toggle con... | python | def convert(self, destination_units, *, convert_variables=False, verbose=True):
"""Convert all compatable axes and constants to given units.
Parameters
----------
destination_units : str
Destination units.
convert_variables : boolean (optional)
Toggle con... | [
"def",
"convert",
"(",
"self",
",",
"destination_units",
",",
"*",
",",
"convert_variables",
"=",
"False",
",",
"verbose",
"=",
"True",
")",
":",
"units_kind",
"=",
"wt_units",
".",
"kind",
"(",
"destination_units",
")",
"for",
"axis",
"in",
"self",
".",
... | Convert all compatable axes and constants to given units.
Parameters
----------
destination_units : str
Destination units.
convert_variables : boolean (optional)
Toggle conversion of stored arrays. Default is False
verbose : bool (optional)
To... | [
"Convert",
"all",
"compatable",
"axes",
"and",
"constants",
"to",
"given",
"units",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_data.py#L751-L805 | train |
wright-group/WrightTools | WrightTools/data/_data.py | Data.create_channel | def create_channel(
self, name, values=None, *, shape=None, units=None, dtype=None, **kwargs
) -> Channel:
"""Append a new channel.
Parameters
----------
name : string
Unique name for this channel.
values : array (optional)
Array. If None, an ... | python | def create_channel(
self, name, values=None, *, shape=None, units=None, dtype=None, **kwargs
) -> Channel:
"""Append a new channel.
Parameters
----------
name : string
Unique name for this channel.
values : array (optional)
Array. If None, an ... | [
"def",
"create_channel",
"(",
"self",
",",
"name",
",",
"values",
"=",
"None",
",",
"*",
",",
"shape",
"=",
"None",
",",
"units",
"=",
"None",
",",
"dtype",
"=",
"None",
",",
"**",
"kwargs",
")",
"->",
"Channel",
":",
"if",
"name",
"in",
"self",
... | Append a new channel.
Parameters
----------
name : string
Unique name for this channel.
values : array (optional)
Array. If None, an empty array equaling the data shape is
created. Default is None.
shape : tuple of int
Shape to use... | [
"Append",
"a",
"new",
"channel",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_data.py#L807-L867 | train |
wright-group/WrightTools | WrightTools/data/_data.py | Data.create_variable | def create_variable(
self, name, values=None, *, shape=None, units=None, dtype=None, **kwargs
) -> Variable:
"""Add new child variable.
Parameters
----------
name : string
Unique identifier.
values : array-like (optional)
Array to populate var... | python | def create_variable(
self, name, values=None, *, shape=None, units=None, dtype=None, **kwargs
) -> Variable:
"""Add new child variable.
Parameters
----------
name : string
Unique identifier.
values : array-like (optional)
Array to populate var... | [
"def",
"create_variable",
"(",
"self",
",",
"name",
",",
"values",
"=",
"None",
",",
"*",
",",
"shape",
"=",
"None",
",",
"units",
"=",
"None",
",",
"dtype",
"=",
"None",
",",
"**",
"kwargs",
")",
"->",
"Variable",
":",
"if",
"name",
"in",
"self",
... | Add new child variable.
Parameters
----------
name : string
Unique identifier.
values : array-like (optional)
Array to populate variable with. If None, an variable will be filled with NaN.
Default is None.
shape : tuple of int
Shap... | [
"Add",
"new",
"child",
"variable",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_data.py#L869-L924 | train |
wright-group/WrightTools | WrightTools/data/_data.py | Data.get_nadir | def get_nadir(self, channel=0) -> tuple:
"""Get the coordinates, in units, of the minimum in a channel.
Parameters
----------
channel : int or str (optional)
Channel. Default is 0.
Returns
-------
generator of numbers
Coordinates in units... | python | def get_nadir(self, channel=0) -> tuple:
"""Get the coordinates, in units, of the minimum in a channel.
Parameters
----------
channel : int or str (optional)
Channel. Default is 0.
Returns
-------
generator of numbers
Coordinates in units... | [
"def",
"get_nadir",
"(",
"self",
",",
"channel",
"=",
"0",
")",
"->",
"tuple",
":",
"if",
"isinstance",
"(",
"channel",
",",
"int",
")",
":",
"channel_index",
"=",
"channel",
"elif",
"isinstance",
"(",
"channel",
",",
"str",
")",
":",
"channel_index",
... | Get the coordinates, in units, of the minimum in a channel.
Parameters
----------
channel : int or str (optional)
Channel. Default is 0.
Returns
-------
generator of numbers
Coordinates in units for each axis. | [
"Get",
"the",
"coordinates",
"in",
"units",
"of",
"the",
"minimum",
"in",
"a",
"channel",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_data.py#L926-L950 | train |
wright-group/WrightTools | WrightTools/data/_data.py | Data.get_zenith | def get_zenith(self, channel=0) -> tuple:
"""Get the coordinates, in units, of the maximum in a channel.
Parameters
----------
channel : int or str (optional)
Channel. Default is 0.
Returns
-------
generator of numbers
Coordinates in unit... | python | def get_zenith(self, channel=0) -> tuple:
"""Get the coordinates, in units, of the maximum in a channel.
Parameters
----------
channel : int or str (optional)
Channel. Default is 0.
Returns
-------
generator of numbers
Coordinates in unit... | [
"def",
"get_zenith",
"(",
"self",
",",
"channel",
"=",
"0",
")",
"->",
"tuple",
":",
"if",
"isinstance",
"(",
"channel",
",",
"int",
")",
":",
"channel_index",
"=",
"channel",
"elif",
"isinstance",
"(",
"channel",
",",
"str",
")",
":",
"channel_index",
... | Get the coordinates, in units, of the maximum in a channel.
Parameters
----------
channel : int or str (optional)
Channel. Default is 0.
Returns
-------
generator of numbers
Coordinates in units for each axis. | [
"Get",
"the",
"coordinates",
"in",
"units",
"of",
"the",
"maximum",
"in",
"a",
"channel",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_data.py#L952-L976 | train |
wright-group/WrightTools | WrightTools/data/_data.py | Data.heal | def heal(self, channel=0, method="linear", fill_value=np.nan, verbose=True):
"""
Remove nans from channel using interpolation.
Parameters
----------
channel : int or str (optional)
Channel to heal. Default is 0.
method : {'linear', 'nearest', 'cubic'} (option... | python | def heal(self, channel=0, method="linear", fill_value=np.nan, verbose=True):
"""
Remove nans from channel using interpolation.
Parameters
----------
channel : int or str (optional)
Channel to heal. Default is 0.
method : {'linear', 'nearest', 'cubic'} (option... | [
"def",
"heal",
"(",
"self",
",",
"channel",
"=",
"0",
",",
"method",
"=",
"\"linear\"",
",",
"fill_value",
"=",
"np",
".",
"nan",
",",
"verbose",
"=",
"True",
")",
":",
"warnings",
".",
"warn",
"(",
"\"heal\"",
",",
"category",
"=",
"wt_exceptions",
... | Remove nans from channel using interpolation.
Parameters
----------
channel : int or str (optional)
Channel to heal. Default is 0.
method : {'linear', 'nearest', 'cubic'} (optional)
The interpolation method. Note that cubic interpolation is only
possi... | [
"Remove",
"nans",
"from",
"channel",
"using",
"interpolation",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_data.py#L978-L1037 | train |
wright-group/WrightTools | WrightTools/data/_data.py | Data.level | def level(self, channel, axis, npts, *, verbose=True):
"""Subtract the average value of npts at the edge of a given axis.
Parameters
----------
channel : int or str
Channel to level.
axis : int
Axis to level along.
npts : int
Number of... | python | def level(self, channel, axis, npts, *, verbose=True):
"""Subtract the average value of npts at the edge of a given axis.
Parameters
----------
channel : int or str
Channel to level.
axis : int
Axis to level along.
npts : int
Number of... | [
"def",
"level",
"(",
"self",
",",
"channel",
",",
"axis",
",",
"npts",
",",
"*",
",",
"verbose",
"=",
"True",
")",
":",
"warnings",
".",
"warn",
"(",
"\"level\"",
",",
"category",
"=",
"wt_exceptions",
".",
"EntireDatasetInMemoryWarning",
")",
"channel_ind... | Subtract the average value of npts at the edge of a given axis.
Parameters
----------
channel : int or str
Channel to level.
axis : int
Axis to level along.
npts : int
Number of points to average for each slice. Positive numbers
ta... | [
"Subtract",
"the",
"average",
"value",
"of",
"npts",
"at",
"the",
"edge",
"of",
"a",
"given",
"axis",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_data.py#L1039-L1076 | train |
wright-group/WrightTools | WrightTools/data/_data.py | Data.print_tree | def print_tree(self, *, verbose=True):
"""Print a ascii-formatted tree representation of the data contents."""
print("{0} ({1})".format(self.natural_name, self.filepath))
self._print_branch("", depth=0, verbose=verbose) | python | def print_tree(self, *, verbose=True):
"""Print a ascii-formatted tree representation of the data contents."""
print("{0} ({1})".format(self.natural_name, self.filepath))
self._print_branch("", depth=0, verbose=verbose) | [
"def",
"print_tree",
"(",
"self",
",",
"*",
",",
"verbose",
"=",
"True",
")",
":",
"print",
"(",
"\"{0} ({1})\"",
".",
"format",
"(",
"self",
".",
"natural_name",
",",
"self",
".",
"filepath",
")",
")",
"self",
".",
"_print_branch",
"(",
"\"\"",
",",
... | Print a ascii-formatted tree representation of the data contents. | [
"Print",
"a",
"ascii",
"-",
"formatted",
"tree",
"representation",
"of",
"the",
"data",
"contents",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_data.py#L1314-L1317 | train |
wright-group/WrightTools | WrightTools/data/_data.py | Data.remove_channel | def remove_channel(self, channel, *, verbose=True):
"""Remove channel from data.
Parameters
----------
channel : int or str
Channel index or name to remove.
verbose : boolean (optional)
Toggle talkback. Default is True.
"""
channel_index =... | python | def remove_channel(self, channel, *, verbose=True):
"""Remove channel from data.
Parameters
----------
channel : int or str
Channel index or name to remove.
verbose : boolean (optional)
Toggle talkback. Default is True.
"""
channel_index =... | [
"def",
"remove_channel",
"(",
"self",
",",
"channel",
",",
"*",
",",
"verbose",
"=",
"True",
")",
":",
"channel_index",
"=",
"wt_kit",
".",
"get_index",
"(",
"self",
".",
"channel_names",
",",
"channel",
")",
"new",
"=",
"list",
"(",
"self",
".",
"chan... | Remove channel from data.
Parameters
----------
channel : int or str
Channel index or name to remove.
verbose : boolean (optional)
Toggle talkback. Default is True. | [
"Remove",
"channel",
"from",
"data",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_data.py#L1353-L1369 | train |
wright-group/WrightTools | WrightTools/data/_data.py | Data.remove_variable | def remove_variable(self, variable, *, implied=True, verbose=True):
"""Remove variable from data.
Parameters
----------
variable : int or str
Variable index or name to remove.
implied : boolean (optional)
Toggle deletion of other variables that start with... | python | def remove_variable(self, variable, *, implied=True, verbose=True):
"""Remove variable from data.
Parameters
----------
variable : int or str
Variable index or name to remove.
implied : boolean (optional)
Toggle deletion of other variables that start with... | [
"def",
"remove_variable",
"(",
"self",
",",
"variable",
",",
"*",
",",
"implied",
"=",
"True",
",",
"verbose",
"=",
"True",
")",
":",
"if",
"isinstance",
"(",
"variable",
",",
"int",
")",
":",
"variable",
"=",
"self",
".",
"variable_names",
"[",
"varia... | Remove variable from data.
Parameters
----------
variable : int or str
Variable index or name to remove.
implied : boolean (optional)
Toggle deletion of other variables that start with the same
name. Default is True.
verbose : boolean (optiona... | [
"Remove",
"variable",
"from",
"data",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_data.py#L1371-L1419 | train |
wright-group/WrightTools | WrightTools/data/_data.py | Data.rename_channels | def rename_channels(self, *, verbose=True, **kwargs):
"""Rename a set of channels.
Parameters
----------
kwargs
Keyword arguments of the form current:'new'.
verbose : boolean (optional)
Toggle talkback. Default is True
"""
# ensure that it... | python | def rename_channels(self, *, verbose=True, **kwargs):
"""Rename a set of channels.
Parameters
----------
kwargs
Keyword arguments of the form current:'new'.
verbose : boolean (optional)
Toggle talkback. Default is True
"""
# ensure that it... | [
"def",
"rename_channels",
"(",
"self",
",",
"*",
",",
"verbose",
"=",
"True",
",",
"**",
"kwargs",
")",
":",
"changed",
"=",
"kwargs",
".",
"keys",
"(",
")",
"for",
"k",
",",
"v",
"in",
"kwargs",
".",
"items",
"(",
")",
":",
"if",
"v",
"not",
"... | Rename a set of channels.
Parameters
----------
kwargs
Keyword arguments of the form current:'new'.
verbose : boolean (optional)
Toggle talkback. Default is True | [
"Rename",
"a",
"set",
"of",
"channels",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_data.py#L1421-L1458 | train |
wright-group/WrightTools | WrightTools/data/_data.py | Data.rename_variables | def rename_variables(self, *, implied=True, verbose=True, **kwargs):
"""Rename a set of variables.
Parameters
----------
kwargs
Keyword arguments of the form current:'new'.
implied : boolean (optional)
Toggle inclusion of other variables that start with t... | python | def rename_variables(self, *, implied=True, verbose=True, **kwargs):
"""Rename a set of variables.
Parameters
----------
kwargs
Keyword arguments of the form current:'new'.
implied : boolean (optional)
Toggle inclusion of other variables that start with t... | [
"def",
"rename_variables",
"(",
"self",
",",
"*",
",",
"implied",
"=",
"True",
",",
"verbose",
"=",
"True",
",",
"**",
"kwargs",
")",
":",
"kwargs",
"=",
"collections",
".",
"OrderedDict",
"(",
"kwargs",
")",
"if",
"implied",
":",
"new",
"=",
"collecti... | Rename a set of variables.
Parameters
----------
kwargs
Keyword arguments of the form current:'new'.
implied : boolean (optional)
Toggle inclusion of other variables that start with the same
name. Default is True.
verbose : boolean (optional)
... | [
"Rename",
"a",
"set",
"of",
"variables",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_data.py#L1460-L1529 | train |
wright-group/WrightTools | WrightTools/data/_data.py | Data.share_nans | def share_nans(self):
"""Share not-a-numbers between all channels.
If any channel is nan at a given index, all channels will be nan
at that index after this operation.
Uses the share_nans method found in wt.kit.
"""
def f(_, s, channels):
outs = wt_kit.shar... | python | def share_nans(self):
"""Share not-a-numbers between all channels.
If any channel is nan at a given index, all channels will be nan
at that index after this operation.
Uses the share_nans method found in wt.kit.
"""
def f(_, s, channels):
outs = wt_kit.shar... | [
"def",
"share_nans",
"(",
"self",
")",
":",
"def",
"f",
"(",
"_",
",",
"s",
",",
"channels",
")",
":",
"outs",
"=",
"wt_kit",
".",
"share_nans",
"(",
"*",
"[",
"c",
"[",
"s",
"]",
"for",
"c",
"in",
"channels",
"]",
")",
"for",
"c",
",",
"o",
... | Share not-a-numbers between all channels.
If any channel is nan at a given index, all channels will be nan
at that index after this operation.
Uses the share_nans method found in wt.kit. | [
"Share",
"not",
"-",
"a",
"-",
"numbers",
"between",
"all",
"channels",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_data.py#L1531-L1545 | train |
wright-group/WrightTools | WrightTools/data/_data.py | Data.smooth | def smooth(self, factors, channel=None, verbose=True) -> "Data":
"""Smooth a channel using an n-dimenional kaiser window.
Note, all arrays are loaded into memory.
For more info see `Kaiser_window`__ wikipedia entry.
__ https://en.wikipedia.org/wiki/Kaiser_window
Parameters
... | python | def smooth(self, factors, channel=None, verbose=True) -> "Data":
"""Smooth a channel using an n-dimenional kaiser window.
Note, all arrays are loaded into memory.
For more info see `Kaiser_window`__ wikipedia entry.
__ https://en.wikipedia.org/wiki/Kaiser_window
Parameters
... | [
"def",
"smooth",
"(",
"self",
",",
"factors",
",",
"channel",
"=",
"None",
",",
"verbose",
"=",
"True",
")",
"->",
"\"Data\"",
":",
"warnings",
".",
"warn",
"(",
"\"smooth\"",
",",
"category",
"=",
"wt_exceptions",
".",
"EntireDatasetInMemoryWarning",
")",
... | Smooth a channel using an n-dimenional kaiser window.
Note, all arrays are loaded into memory.
For more info see `Kaiser_window`__ wikipedia entry.
__ https://en.wikipedia.org/wiki/Kaiser_window
Parameters
----------
factors : int or list of int
The smooth... | [
"Smooth",
"a",
"channel",
"using",
"an",
"n",
"-",
"dimenional",
"kaiser",
"window",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_data.py#L1547-L1613 | train |
wright-group/WrightTools | WrightTools/data/_data.py | Data.transform | def transform(self, *axes, verbose=True):
"""Transform the data.
Parameters
----------
axes : strings
Expressions for the new set of axes.
verbose : boolean (optional)
Toggle talkback. Default is True
See Also
--------
set_constan... | python | def transform(self, *axes, verbose=True):
"""Transform the data.
Parameters
----------
axes : strings
Expressions for the new set of axes.
verbose : boolean (optional)
Toggle talkback. Default is True
See Also
--------
set_constan... | [
"def",
"transform",
"(",
"self",
",",
"*",
"axes",
",",
"verbose",
"=",
"True",
")",
":",
"new",
"=",
"[",
"]",
"newt",
"=",
"\"newt\"",
"in",
"self",
".",
"axis_expressions",
"current",
"=",
"{",
"a",
".",
"expression",
":",
"a",
"for",
"a",
"in",... | Transform the data.
Parameters
----------
axes : strings
Expressions for the new set of axes.
verbose : boolean (optional)
Toggle talkback. Default is True
See Also
--------
set_constants
Similar method except for constants | [
"Transform",
"the",
"data",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_data.py#L1764-L1799 | train |
wright-group/WrightTools | WrightTools/data/_data.py | Data.set_constants | def set_constants(self, *constants, verbose=True):
"""Set the constants associated with the data.
Parameters
----------
constants : str
Expressions for the new set of constants.
verbose : boolean (optional)
Toggle talkback. Default is True
See Al... | python | def set_constants(self, *constants, verbose=True):
"""Set the constants associated with the data.
Parameters
----------
constants : str
Expressions for the new set of constants.
verbose : boolean (optional)
Toggle talkback. Default is True
See Al... | [
"def",
"set_constants",
"(",
"self",
",",
"*",
"constants",
",",
"verbose",
"=",
"True",
")",
":",
"new",
"=",
"[",
"]",
"current",
"=",
"{",
"c",
".",
"expression",
":",
"c",
"for",
"c",
"in",
"self",
".",
"_constants",
"}",
"for",
"expression",
"... | Set the constants associated with the data.
Parameters
----------
constants : str
Expressions for the new set of constants.
verbose : boolean (optional)
Toggle talkback. Default is True
See Also
--------
transform
Similar meth... | [
"Set",
"the",
"constants",
"associated",
"with",
"the",
"data",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_data.py#L1801-L1833 | train |
wright-group/WrightTools | WrightTools/data/_data.py | Data.create_constant | def create_constant(self, expression, *, verbose=True):
"""Append a constant to the stored list.
Parameters
----------
expression : str
Expression for the new constant.
verbose : boolean (optional)
Toggle talkback. Default is True
See... | python | def create_constant(self, expression, *, verbose=True):
"""Append a constant to the stored list.
Parameters
----------
expression : str
Expression for the new constant.
verbose : boolean (optional)
Toggle talkback. Default is True
See... | [
"def",
"create_constant",
"(",
"self",
",",
"expression",
",",
"*",
",",
"verbose",
"=",
"True",
")",
":",
"if",
"expression",
"in",
"self",
".",
"constant_expressions",
":",
"wt_exceptions",
".",
"ObjectExistsWarning",
".",
"warn",
"(",
"expression",
")",
"... | Append a constant to the stored list.
Parameters
----------
expression : str
Expression for the new constant.
verbose : boolean (optional)
Toggle talkback. Default is True
See Also
--------
set_constants
Remove and... | [
"Append",
"a",
"constant",
"to",
"the",
"stored",
"list",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_data.py#L1835-L1863 | train |
wright-group/WrightTools | WrightTools/data/_data.py | Data.remove_constant | def remove_constant(self, constant, *, verbose=True):
"""Remove a constant from the stored list.
Parameters
----------
constant : str or Constant or int
Expression for the new constant.
verbose : boolean (optional)
Toggle talkback. Default is True
... | python | def remove_constant(self, constant, *, verbose=True):
"""Remove a constant from the stored list.
Parameters
----------
constant : str or Constant or int
Expression for the new constant.
verbose : boolean (optional)
Toggle talkback. Default is True
... | [
"def",
"remove_constant",
"(",
"self",
",",
"constant",
",",
"*",
",",
"verbose",
"=",
"True",
")",
":",
"if",
"isinstance",
"(",
"constant",
",",
"(",
"str",
",",
"int",
")",
")",
":",
"constant_index",
"=",
"wt_kit",
".",
"get_index",
"(",
"self",
... | Remove a constant from the stored list.
Parameters
----------
constant : str or Constant or int
Expression for the new constant.
verbose : boolean (optional)
Toggle talkback. Default is True
See Also
--------
set_constants
... | [
"Remove",
"a",
"constant",
"from",
"the",
"stored",
"list",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_data.py#L1865-L1891 | train |
wright-group/WrightTools | WrightTools/data/_data.py | Data.zoom | def zoom(self, factor, order=1, verbose=True):
"""Zoom the data array using spline interpolation of the requested order.
The number of points along each axis is increased by factor.
See `scipy ndimage`__ for more info.
__ http://docs.scipy.org/doc/scipy/reference/
g... | python | def zoom(self, factor, order=1, verbose=True):
"""Zoom the data array using spline interpolation of the requested order.
The number of points along each axis is increased by factor.
See `scipy ndimage`__ for more info.
__ http://docs.scipy.org/doc/scipy/reference/
g... | [
"def",
"zoom",
"(",
"self",
",",
"factor",
",",
"order",
"=",
"1",
",",
"verbose",
"=",
"True",
")",
":",
"raise",
"NotImplementedError",
"import",
"scipy",
".",
"ndimage",
"for",
"axis",
"in",
"self",
".",
"_axes",
":",
"axis",
"[",
":",
"]",
"=",
... | Zoom the data array using spline interpolation of the requested order.
The number of points along each axis is increased by factor.
See `scipy ndimage`__ for more info.
__ http://docs.scipy.org/doc/scipy/reference/
generated/scipy.ndimage.interpolation.zoom.html
Pa... | [
"Zoom",
"the",
"data",
"array",
"using",
"spline",
"interpolation",
"of",
"the",
"requested",
"order",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_data.py#L1893-L1922 | train |
wright-group/WrightTools | WrightTools/kit/_path.py | get_path_matching | def get_path_matching(name):
"""Get path matching a name.
Parameters
----------
name : string
Name to search for.
Returns
-------
string
Full filepath.
"""
# first try looking in the user folder
p = os.path.join(os.path.expanduser("~"), name)
# then try expa... | python | def get_path_matching(name):
"""Get path matching a name.
Parameters
----------
name : string
Name to search for.
Returns
-------
string
Full filepath.
"""
# first try looking in the user folder
p = os.path.join(os.path.expanduser("~"), name)
# then try expa... | [
"def",
"get_path_matching",
"(",
"name",
")",
":",
"p",
"=",
"os",
".",
"path",
".",
"join",
"(",
"os",
".",
"path",
".",
"expanduser",
"(",
"\"~\"",
")",
",",
"name",
")",
"if",
"not",
"os",
".",
"path",
".",
"isdir",
"(",
"p",
")",
":",
"p",
... | Get path matching a name.
Parameters
----------
name : string
Name to search for.
Returns
-------
string
Full filepath. | [
"Get",
"path",
"matching",
"a",
"name",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_path.py#L20-L44 | train |
wright-group/WrightTools | WrightTools/kit/_path.py | glob_handler | def glob_handler(extension, folder=None, identifier=None):
"""Return a list of all files matching specified inputs.
Parameters
----------
extension : string
File extension.
folder : string (optional)
Folder to search within. Default is None (current working
directory).
i... | python | def glob_handler(extension, folder=None, identifier=None):
"""Return a list of all files matching specified inputs.
Parameters
----------
extension : string
File extension.
folder : string (optional)
Folder to search within. Default is None (current working
directory).
i... | [
"def",
"glob_handler",
"(",
"extension",
",",
"folder",
"=",
"None",
",",
"identifier",
"=",
"None",
")",
":",
"filepaths",
"=",
"[",
"]",
"if",
"folder",
":",
"folder",
"=",
"folder",
".",
"replace",
"(",
"\"[\"",
",",
"\"?\"",
")",
"folder",
"=",
"... | Return a list of all files matching specified inputs.
Parameters
----------
extension : string
File extension.
folder : string (optional)
Folder to search within. Default is None (current working
directory).
identifier : string
Unique identifier. Default is None.
... | [
"Return",
"a",
"list",
"of",
"all",
"files",
"matching",
"specified",
"inputs",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/kit/_path.py#L47-L81 | train |
wright-group/WrightTools | WrightTools/data/_channel.py | Channel.major_extent | def major_extent(self) -> complex:
"""Maximum deviation from null."""
return max((self.max() - self.null, self.null - self.min())) | python | def major_extent(self) -> complex:
"""Maximum deviation from null."""
return max((self.max() - self.null, self.null - self.min())) | [
"def",
"major_extent",
"(",
"self",
")",
"->",
"complex",
":",
"return",
"max",
"(",
"(",
"self",
".",
"max",
"(",
")",
"-",
"self",
".",
"null",
",",
"self",
".",
"null",
"-",
"self",
".",
"min",
"(",
")",
")",
")"
] | Maximum deviation from null. | [
"Maximum",
"deviation",
"from",
"null",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_channel.py#L82-L84 | train |
wright-group/WrightTools | WrightTools/data/_channel.py | Channel.minor_extent | def minor_extent(self) -> complex:
"""Minimum deviation from null."""
return min((self.max() - self.null, self.null - self.min())) | python | def minor_extent(self) -> complex:
"""Minimum deviation from null."""
return min((self.max() - self.null, self.null - self.min())) | [
"def",
"minor_extent",
"(",
"self",
")",
"->",
"complex",
":",
"return",
"min",
"(",
"(",
"self",
".",
"max",
"(",
")",
"-",
"self",
".",
"null",
",",
"self",
".",
"null",
"-",
"self",
".",
"min",
"(",
")",
")",
")"
] | Minimum deviation from null. | [
"Minimum",
"deviation",
"from",
"null",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_channel.py#L87-L89 | train |
wright-group/WrightTools | WrightTools/data/_channel.py | Channel.normalize | def normalize(self, mag=1.):
"""Normalize a Channel, set `null` to 0 and the mag to given value.
Parameters
----------
mag : float (optional)
New value of mag. Default is 1.
"""
def f(dataset, s, null, mag):
dataset[s] -= null
dataset... | python | def normalize(self, mag=1.):
"""Normalize a Channel, set `null` to 0 and the mag to given value.
Parameters
----------
mag : float (optional)
New value of mag. Default is 1.
"""
def f(dataset, s, null, mag):
dataset[s] -= null
dataset... | [
"def",
"normalize",
"(",
"self",
",",
"mag",
"=",
"1.",
")",
":",
"def",
"f",
"(",
"dataset",
",",
"s",
",",
"null",
",",
"mag",
")",
":",
"dataset",
"[",
"s",
"]",
"-=",
"null",
"dataset",
"[",
"s",
"]",
"/=",
"mag",
"if",
"self",
".",
"sign... | Normalize a Channel, set `null` to 0 and the mag to given value.
Parameters
----------
mag : float (optional)
New value of mag. Default is 1. | [
"Normalize",
"a",
"Channel",
"set",
"null",
"to",
"0",
"and",
"the",
"mag",
"to",
"given",
"value",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_channel.py#L115-L133 | train |
wright-group/WrightTools | WrightTools/data/_channel.py | Channel.trim | def trim(self, neighborhood, method="ztest", factor=3, replace="nan", verbose=True):
"""Remove outliers from the dataset.
Identifies outliers by comparing each point to its
neighbors using a statistical test.
Parameters
----------
neighborhood : list of integers
... | python | def trim(self, neighborhood, method="ztest", factor=3, replace="nan", verbose=True):
"""Remove outliers from the dataset.
Identifies outliers by comparing each point to its
neighbors using a statistical test.
Parameters
----------
neighborhood : list of integers
... | [
"def",
"trim",
"(",
"self",
",",
"neighborhood",
",",
"method",
"=",
"\"ztest\"",
",",
"factor",
"=",
"3",
",",
"replace",
"=",
"\"nan\"",
",",
"verbose",
"=",
"True",
")",
":",
"warnings",
".",
"warn",
"(",
"\"trim\"",
",",
"category",
"=",
"wt_except... | Remove outliers from the dataset.
Identifies outliers by comparing each point to its
neighbors using a statistical test.
Parameters
----------
neighborhood : list of integers
Size of the neighborhood in each dimension. Length of the list must
be equal to... | [
"Remove",
"outliers",
"from",
"the",
"dataset",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_channel.py#L135-L223 | train |
wright-group/WrightTools | WrightTools/_dataset.py | Dataset.units | def units(self, value):
"""Set units."""
if value is None:
if "units" in self.attrs.keys():
self.attrs.pop("units")
else:
try:
self.attrs["units"] = value
except AttributeError:
self.attrs["units"] = value | python | def units(self, value):
"""Set units."""
if value is None:
if "units" in self.attrs.keys():
self.attrs.pop("units")
else:
try:
self.attrs["units"] = value
except AttributeError:
self.attrs["units"] = value | [
"def",
"units",
"(",
"self",
",",
"value",
")",
":",
"if",
"value",
"is",
"None",
":",
"if",
"\"units\"",
"in",
"self",
".",
"attrs",
".",
"keys",
"(",
")",
":",
"self",
".",
"attrs",
".",
"pop",
"(",
"\"units\"",
")",
"else",
":",
"try",
":",
... | Set units. | [
"Set",
"units",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/_dataset.py#L179-L188 | train |
wright-group/WrightTools | WrightTools/_dataset.py | Dataset.argmax | def argmax(self):
"""Index of the maximum, ignorning nans."""
if "argmax" not in self.attrs.keys():
def f(dataset, s):
arr = dataset[s]
try:
amin = np.nanargmax(arr)
except ValueError:
amin = 0
... | python | def argmax(self):
"""Index of the maximum, ignorning nans."""
if "argmax" not in self.attrs.keys():
def f(dataset, s):
arr = dataset[s]
try:
amin = np.nanargmax(arr)
except ValueError:
amin = 0
... | [
"def",
"argmax",
"(",
"self",
")",
":",
"if",
"\"argmax\"",
"not",
"in",
"self",
".",
"attrs",
".",
"keys",
"(",
")",
":",
"def",
"f",
"(",
"dataset",
",",
"s",
")",
":",
"arr",
"=",
"dataset",
"[",
"s",
"]",
"try",
":",
"amin",
"=",
"np",
".... | Index of the maximum, ignorning nans. | [
"Index",
"of",
"the",
"maximum",
"ignorning",
"nans",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/_dataset.py#L190-L208 | train |
wright-group/WrightTools | WrightTools/_dataset.py | Dataset.chunkwise | def chunkwise(self, func, *args, **kwargs):
"""Execute a function for each chunk in the dataset.
Order of excecution is not guaranteed.
Parameters
----------
func : function
Function to execute. First two arguments must be dataset,
slices.
args (... | python | def chunkwise(self, func, *args, **kwargs):
"""Execute a function for each chunk in the dataset.
Order of excecution is not guaranteed.
Parameters
----------
func : function
Function to execute. First two arguments must be dataset,
slices.
args (... | [
"def",
"chunkwise",
"(",
"self",
",",
"func",
",",
"*",
"args",
",",
"**",
"kwargs",
")",
":",
"out",
"=",
"collections",
".",
"OrderedDict",
"(",
")",
"for",
"s",
"in",
"self",
".",
"slices",
"(",
")",
":",
"key",
"=",
"tuple",
"(",
"sss",
".",
... | Execute a function for each chunk in the dataset.
Order of excecution is not guaranteed.
Parameters
----------
func : function
Function to execute. First two arguments must be dataset,
slices.
args (optional)
Additional (unchanging) arguments... | [
"Execute",
"a",
"function",
"for",
"each",
"chunk",
"in",
"the",
"dataset",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/_dataset.py#L230-L256 | train |
wright-group/WrightTools | WrightTools/_dataset.py | Dataset.clip | def clip(self, min=None, max=None, replace=np.nan):
"""Clip values outside of a defined range.
Parameters
----------
min : number (optional)
New channel minimum. Default is None.
max : number (optional)
New channel maximum. Default is None.
replac... | python | def clip(self, min=None, max=None, replace=np.nan):
"""Clip values outside of a defined range.
Parameters
----------
min : number (optional)
New channel minimum. Default is None.
max : number (optional)
New channel maximum. Default is None.
replac... | [
"def",
"clip",
"(",
"self",
",",
"min",
"=",
"None",
",",
"max",
"=",
"None",
",",
"replace",
"=",
"np",
".",
"nan",
")",
":",
"if",
"max",
"is",
"None",
":",
"max",
"=",
"self",
".",
"max",
"(",
")",
"if",
"min",
"is",
"None",
":",
"min",
... | Clip values outside of a defined range.
Parameters
----------
min : number (optional)
New channel minimum. Default is None.
max : number (optional)
New channel maximum. Default is None.
replace : number or 'value' (optional)
Replace behavior. ... | [
"Clip",
"values",
"outside",
"of",
"a",
"defined",
"range",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/_dataset.py#L258-L290 | train |
wright-group/WrightTools | WrightTools/_dataset.py | Dataset.convert | def convert(self, destination_units):
"""Convert units.
Parameters
----------
destination_units : string (optional)
Units to convert into.
"""
if not wt_units.is_valid_conversion(self.units, destination_units):
kind = wt_units.kind(self.units)
... | python | def convert(self, destination_units):
"""Convert units.
Parameters
----------
destination_units : string (optional)
Units to convert into.
"""
if not wt_units.is_valid_conversion(self.units, destination_units):
kind = wt_units.kind(self.units)
... | [
"def",
"convert",
"(",
"self",
",",
"destination_units",
")",
":",
"if",
"not",
"wt_units",
".",
"is_valid_conversion",
"(",
"self",
".",
"units",
",",
"destination_units",
")",
":",
"kind",
"=",
"wt_units",
".",
"kind",
"(",
"self",
".",
"units",
")",
"... | Convert units.
Parameters
----------
destination_units : string (optional)
Units to convert into. | [
"Convert",
"units",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/_dataset.py#L292-L311 | train |
wright-group/WrightTools | WrightTools/_dataset.py | Dataset.log | def log(self, base=np.e, floor=None):
"""Take the log of the entire dataset.
Parameters
----------
base : number (optional)
Base of log. Default is e.
floor : number (optional)
Clip values below floor after log. Default is None.
"""
def f... | python | def log(self, base=np.e, floor=None):
"""Take the log of the entire dataset.
Parameters
----------
base : number (optional)
Base of log. Default is e.
floor : number (optional)
Clip values below floor after log. Default is None.
"""
def f... | [
"def",
"log",
"(",
"self",
",",
"base",
"=",
"np",
".",
"e",
",",
"floor",
"=",
"None",
")",
":",
"def",
"f",
"(",
"dataset",
",",
"s",
",",
"base",
",",
"floor",
")",
":",
"arr",
"=",
"dataset",
"[",
"s",
"]",
"arr",
"=",
"np",
".",
"log",... | Take the log of the entire dataset.
Parameters
----------
base : number (optional)
Base of log. Default is e.
floor : number (optional)
Clip values below floor after log. Default is None. | [
"Take",
"the",
"log",
"of",
"the",
"entire",
"dataset",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/_dataset.py#L313-L333 | train |
wright-group/WrightTools | WrightTools/_dataset.py | Dataset.log10 | def log10(self, floor=None):
"""Take the log base 10 of the entire dataset.
Parameters
----------
floor : number (optional)
Clip values below floor after log. Default is None.
"""
def f(dataset, s, floor):
arr = dataset[s]
arr = np.lo... | python | def log10(self, floor=None):
"""Take the log base 10 of the entire dataset.
Parameters
----------
floor : number (optional)
Clip values below floor after log. Default is None.
"""
def f(dataset, s, floor):
arr = dataset[s]
arr = np.lo... | [
"def",
"log10",
"(",
"self",
",",
"floor",
"=",
"None",
")",
":",
"def",
"f",
"(",
"dataset",
",",
"s",
",",
"floor",
")",
":",
"arr",
"=",
"dataset",
"[",
"s",
"]",
"arr",
"=",
"np",
".",
"log10",
"(",
"arr",
")",
"if",
"floor",
"is",
"not",... | Take the log base 10 of the entire dataset.
Parameters
----------
floor : number (optional)
Clip values below floor after log. Default is None. | [
"Take",
"the",
"log",
"base",
"10",
"of",
"the",
"entire",
"dataset",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/_dataset.py#L335-L351 | train |
wright-group/WrightTools | WrightTools/_dataset.py | Dataset.max | def max(self):
"""Maximum, ignorning nans."""
if "max" not in self.attrs.keys():
def f(dataset, s):
return np.nanmax(dataset[s])
self.attrs["max"] = np.nanmax(list(self.chunkwise(f).values()))
return self.attrs["max"] | python | def max(self):
"""Maximum, ignorning nans."""
if "max" not in self.attrs.keys():
def f(dataset, s):
return np.nanmax(dataset[s])
self.attrs["max"] = np.nanmax(list(self.chunkwise(f).values()))
return self.attrs["max"] | [
"def",
"max",
"(",
"self",
")",
":",
"if",
"\"max\"",
"not",
"in",
"self",
".",
"attrs",
".",
"keys",
"(",
")",
":",
"def",
"f",
"(",
"dataset",
",",
"s",
")",
":",
"return",
"np",
".",
"nanmax",
"(",
"dataset",
"[",
"s",
"]",
")",
"self",
".... | Maximum, ignorning nans. | [
"Maximum",
"ignorning",
"nans",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/_dataset.py#L371-L379 | train |
wright-group/WrightTools | WrightTools/_dataset.py | Dataset.min | def min(self):
"""Minimum, ignoring nans."""
if "min" not in self.attrs.keys():
def f(dataset, s):
return np.nanmin(dataset[s])
self.attrs["min"] = np.nanmin(list(self.chunkwise(f).values()))
return self.attrs["min"] | python | def min(self):
"""Minimum, ignoring nans."""
if "min" not in self.attrs.keys():
def f(dataset, s):
return np.nanmin(dataset[s])
self.attrs["min"] = np.nanmin(list(self.chunkwise(f).values()))
return self.attrs["min"] | [
"def",
"min",
"(",
"self",
")",
":",
"if",
"\"min\"",
"not",
"in",
"self",
".",
"attrs",
".",
"keys",
"(",
")",
":",
"def",
"f",
"(",
"dataset",
",",
"s",
")",
":",
"return",
"np",
".",
"nanmin",
"(",
"dataset",
"[",
"s",
"]",
")",
"self",
".... | Minimum, ignoring nans. | [
"Minimum",
"ignoring",
"nans",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/_dataset.py#L381-L389 | train |
wright-group/WrightTools | WrightTools/_dataset.py | Dataset.slices | def slices(self):
"""Returns a generator yielding tuple of slice objects.
Order is not guaranteed.
"""
if self.chunks is None:
yield tuple(slice(None, s) for s in self.shape)
else:
ceilings = tuple(-(-s // c) for s, c in zip(self.shape, self.chunks))
... | python | def slices(self):
"""Returns a generator yielding tuple of slice objects.
Order is not guaranteed.
"""
if self.chunks is None:
yield tuple(slice(None, s) for s in self.shape)
else:
ceilings = tuple(-(-s // c) for s, c in zip(self.shape, self.chunks))
... | [
"def",
"slices",
"(",
"self",
")",
":",
"if",
"self",
".",
"chunks",
"is",
"None",
":",
"yield",
"tuple",
"(",
"slice",
"(",
"None",
",",
"s",
")",
"for",
"s",
"in",
"self",
".",
"shape",
")",
"else",
":",
"ceilings",
"=",
"tuple",
"(",
"-",
"(... | Returns a generator yielding tuple of slice objects.
Order is not guaranteed. | [
"Returns",
"a",
"generator",
"yielding",
"tuple",
"of",
"slice",
"objects",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/_dataset.py#L391-L406 | train |
wright-group/WrightTools | WrightTools/data/_constant.py | Constant.label | def label(self) -> str:
"""A latex formatted label representing constant expression and united value."""
label = self.expression.replace("_", "\\;")
if self.units_kind:
symbol = wt_units.get_symbol(self.units)
for v in self.variables:
vl = "%s_{%s}" % (sym... | python | def label(self) -> str:
"""A latex formatted label representing constant expression and united value."""
label = self.expression.replace("_", "\\;")
if self.units_kind:
symbol = wt_units.get_symbol(self.units)
for v in self.variables:
vl = "%s_{%s}" % (sym... | [
"def",
"label",
"(",
"self",
")",
"->",
"str",
":",
"label",
"=",
"self",
".",
"expression",
".",
"replace",
"(",
"\"_\"",
",",
"\"\\\\;\"",
")",
"if",
"self",
".",
"units_kind",
":",
"symbol",
"=",
"wt_units",
".",
"get_symbol",
"(",
"self",
".",
"u... | A latex formatted label representing constant expression and united value. | [
"A",
"latex",
"formatted",
"label",
"representing",
"constant",
"expression",
"and",
"united",
"value",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/data/_constant.py#L61-L81 | train |
wright-group/WrightTools | WrightTools/collection/_directory.py | from_directory | def from_directory(filepath, from_methods, *, name=None, parent=None, verbose=True):
"""Create a WrightTools Collection from a directory of source files.
Parameters
----------
filepath: path-like
Path to the directory on the file system
from_methods: dict<str, callable>
Dictionary w... | python | def from_directory(filepath, from_methods, *, name=None, parent=None, verbose=True):
"""Create a WrightTools Collection from a directory of source files.
Parameters
----------
filepath: path-like
Path to the directory on the file system
from_methods: dict<str, callable>
Dictionary w... | [
"def",
"from_directory",
"(",
"filepath",
",",
"from_methods",
",",
"*",
",",
"name",
"=",
"None",
",",
"parent",
"=",
"None",
",",
"verbose",
"=",
"True",
")",
":",
"filepath",
"=",
"pathlib",
".",
"Path",
"(",
"filepath",
")",
".",
"resolve",
"(",
... | Create a WrightTools Collection from a directory of source files.
Parameters
----------
filepath: path-like
Path to the directory on the file system
from_methods: dict<str, callable>
Dictionary which maps patterns (using Unix-like glob wildcard patterns)
to functions which take ... | [
"Create",
"a",
"WrightTools",
"Collection",
"from",
"a",
"directory",
"of",
"source",
"files",
"."
] | 80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb | https://github.com/wright-group/WrightTools/blob/80d3ddd5074d8d5c1bc03fd5a0e0f10d4b424aeb/WrightTools/collection/_directory.py#L24-L92 | train |
thombashi/allpairspy | examples/example2.2.py | is_valid_combination | def is_valid_combination(values, names):
dictionary = dict(zip(names, values))
"""
Should return True if combination is valid and False otherwise.
Dictionary that is passed here can be incomplete.
To prevent search for unnecessary items filtering function
is executed with found subset of data... | python | def is_valid_combination(values, names):
dictionary = dict(zip(names, values))
"""
Should return True if combination is valid and False otherwise.
Dictionary that is passed here can be incomplete.
To prevent search for unnecessary items filtering function
is executed with found subset of data... | [
"def",
"is_valid_combination",
"(",
"values",
",",
"names",
")",
":",
"dictionary",
"=",
"dict",
"(",
"zip",
"(",
"names",
",",
"values",
")",
")",
"rules",
"=",
"[",
"lambda",
"d",
":",
"\"98\"",
"==",
"d",
"[",
"\"os\"",
"]",
"and",
"\"Brand Y\"",
... | Should return True if combination is valid and False otherwise.
Dictionary that is passed here can be incomplete.
To prevent search for unnecessary items filtering function
is executed with found subset of data to validate it. | [
"Should",
"return",
"True",
"if",
"combination",
"is",
"valid",
"and",
"False",
"otherwise",
"."
] | 9dd256d7ccdc1348c5807d4a814294d9c5192293 | https://github.com/thombashi/allpairspy/blob/9dd256d7ccdc1348c5807d4a814294d9c5192293/examples/example2.2.py#L14-L42 | train |
thombashi/allpairspy | examples/example2.1.py | is_valid_combination | def is_valid_combination(row):
"""
This is a filtering function. Filtering functions should return True
if combination is valid and False otherwise.
Test row that is passed here can be incomplete.
To prevent search for unnecessary items filtering function
is executed with found subset of data t... | python | def is_valid_combination(row):
"""
This is a filtering function. Filtering functions should return True
if combination is valid and False otherwise.
Test row that is passed here can be incomplete.
To prevent search for unnecessary items filtering function
is executed with found subset of data t... | [
"def",
"is_valid_combination",
"(",
"row",
")",
":",
"n",
"=",
"len",
"(",
"row",
")",
"if",
"n",
">",
"1",
":",
"if",
"\"98\"",
"==",
"row",
"[",
"1",
"]",
"and",
"\"Brand Y\"",
"==",
"row",
"[",
"0",
"]",
":",
"return",
"False",
"if",
"\"XP\"",... | This is a filtering function. Filtering functions should return True
if combination is valid and False otherwise.
Test row that is passed here can be incomplete.
To prevent search for unnecessary items filtering function
is executed with found subset of data to validate it. | [
"This",
"is",
"a",
"filtering",
"function",
".",
"Filtering",
"functions",
"should",
"return",
"True",
"if",
"combination",
"is",
"valid",
"and",
"False",
"otherwise",
"."
] | 9dd256d7ccdc1348c5807d4a814294d9c5192293 | https://github.com/thombashi/allpairspy/blob/9dd256d7ccdc1348c5807d4a814294d9c5192293/examples/example2.1.py#L13-L39 | train |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.