Replace analysis with local workspace contents

Remove old analysis before replacement

Restore repository before accidental workspace replacement

Replace analysis with local workspace contents

Remove old analysis before replacement

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Delete stale generated folder analysis/__pycache__

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Update analysis

Sync analysis and tests/test_D from local workspace

Replace analysis with modular report generators

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add flat-distance-table arm to test wrong-pair citation errors

citation audit: verify the SPECIFIC pair, not just any real table value

fix class-name matcher: word-token subset, not raw substring (dishwasher/washer false positive)

fix class-name matcher: word-token subset, not raw substring (dishwasher/washer false positive)

citation audit: split not-in-table into missing-class vs wrong-entry

fix citation_audit answer parsing: tolerate units attached to answer_given

overlay arm redesign: source purely from SAM3 raw per-frame output, zero derived-geometry math

add per-model citation-fidelity audit tool

record overlay-arm fixes and the floor-level bug candidate follow-up

add internvl3.5-2b: matched scale pair for the internvl family

add truncated-budget arm: single-pass no-rescue at any token cap

uniform triad runs both protocols: full H7 2x3 grid

register uniform base-protocol triad

correspondence arms: --frame-linked-code (weak) + --overlay-ids (strong)

trim budget arm to single 16-vs-512 contrast

protocol segment = bare reasoning budget (512, 16, ...)

budget in protocol path segment: extended -> extended-<budget>

register budget dose-response arm (B-budget target + amendment)

second amendment: corrected printed distance, raw ranks (analysis/preregistration.md)

no-legend amendment: D sweep flag + preregistration record

preregistration: distance-table bake-in tried and REVERTED (evidence recorded)

preregistration: corrected-distance-table amendment

single-format amendment + calibrated 512 budget in sweeps/runbook

preregistration: calibrated reasoning budget 2048 -> 512 (pilot evidence)

code backup: analysis (calibration module + question_ids plumbing + pilot sample)

code backup: analysis

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