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# /// script
# requires-python = ">=3.10"
# dependencies = ["duckdb>=1.1", "zstandard", "huggingface_hub>=2.0"]
# ///
"""Select rows of the Agentic Env Index, download the files they point to and check them against their rows.
One command, no setup (uv reads the dependencies from the block above):
uv run https://huggingface.co/datasets/Battam/agentic-env-index/resolve/main/tools/fetch.py \\
--domain D3 --form spreadsheets-with-answers --sample 3 --out ./data
or, with Python 3.10 or newer: pip install duckdb huggingface_hub, then python fetch.py with the same options.
The index is a set of Parquet tables (one row per downloadable item). The script first resolves the sources
you name (by --source, --domain, --form or --tag) from meta/catalog.parquet, then reads only those sources'
data files and only their rows of the tables under meta/, applies the default profile (below) and your own
conditions, rebuilds each selected row into a full pointer with meta/sources.json, downloads the item and
checks it against what the row records. Before downloading it prints how many units the selection had and how
many each criterion of the profile removed; a selection that ends empty says which criterion emptied it. A
source, domain or form name that the catalog does not have stops the run with one line naming the closest
names (exit code 2).
Default profile (the criteria the task builders apply; --all turns all of them off, each has its own option):
duplicate a duplicate copy of another row of the selection: the same content
or natural key, judged over the rows the other criteria keep --keep-duplicates
benchmark matched a benchmark: a copy of benchmark data (meta/bench_overlap.parquet)
or a row of a collection awaiting a ruling (meta/bench_checked.parquet,
scope container); --allow-benchmark also keeps the next one --allow-benchmark
not compared not compared with the benchmark list yet: the row's data file is not
listed as compared in meta/bench_checked.parquet --allow-not-compared
license the license does not let the files be shipped: the row's training
tier must be yes and its redistribution tier yes or conditional (the
rule of the catalog column license.ship) --any-license
language the row records a natural language (source_meta.language or
source_meta.labels.language, as an ISO 639 code) and it is not English
or zxx (no linguistic content); rows that record none are kept --any-language
personal data the catalog's pii.level of the source is present or suspected, the
row's sensitive column is set, or the row's pool fields mark it
pseudonymous or identifiable --allow-personal-data
size the recorded size is above 20 MB (20,000,000 bytes); rows of unknown
size are kept and their download stops at 20 MB --any-size
A unit is one row, or, for a collection whose rows carry roles (unit, companion, answer), the rows that share a
unit_group: a unit is removed when any of its unit or answer rows fails a criterion, and its answers go with it.
Companion files (README, LICENSE) of a source come with the first unit taken from it. Each criterion is reported
with its own count and reason (benchmark and not compared apart) and names the option that keeps what it removed.
Output (--out DIR):
DIR/<domain>/<source>/<path> units and companion files; <domain> is the row's pool_domain when it has one
(such as D3_data), else the top-level code of the source's first domain in
meta/catalog.parquet (such as D3); <path> is the row's pool_path, else
<collection>/<the rest of its pointer_id>
DIR/answer/<source>/<path> answers and expected results (pool_path without its leading answer/)
DIR/_meta/manifest.jsonl one line per file on disk: source, path (relative to DIR), url, sha256, bytes,
spdx, licence_url, publisher, retrieved, answer (for a unit: the path of its
answer, a list when it has several), origin_kind, leaf, role (unit, companion or
answer), unit_group, answer_for, and verified (true when the sha256 matched the
one the index records, false when the index records none and it was computed)
DIR/_meta/sizes.tsv one line per source, no header: leaf, source, origin, bytes, spdx
DIR/_meta/fetch_manifest.jsonl one line per selected row and run, with its status (appended, never rewritten);
a --dry-run writes one line per file of the selection (see below)
DIR/_meta/fetch_run.json repository, commit, arguments and date of the last run
Running again into the same DIR keeps what is there: files already present with the right size and sha256 are
not downloaded again, and manifest.jsonl and sizes.tsv are rewritten to cover every file of every run.
Units stored inside another file: a row of a collection whose unit is a member of a container (a zip or tar
archive) or is stored compressed or encoded points at that upstream file and lists in source_meta.transform the
steps that make the unit (unzip:<member>, untar:<member>, gunzip, bunzip2, unxz, unxxd, uudecode, uncompress,
gzip). The upstream file is downloaded and checked against the row, the unit is made out of it and checked against
the unit's recorded hash (source_meta.unit_sha256, or content_sha256 when the last step is gzip), and only the unit
is written, under the unit's path; its manifest line says extracted and keeps the upstream file's size and sha256
(upstream_bytes, upstream_sha256). A unit that does not match fails and the upstream file is kept as <name>.stale.
The steps run in transform.py, taken from next to this script or else from tools/ of the index at the commit read
(or of the local --data copy). A unit marked expand (an archive meant to be used as a folder) is delivered as the
archive; tools/to_pool.py unpacks it (python to_pool.py DIR --out ./pools --name <name>).
--sample N takes N units per selected source, the same ones on every run (the first N in a fixed order of their
sha256 keys), so a category can be tried within a few MB. --limit N takes N units over the whole selection, in
the same fixed order.
What is checked: a row with hashes has its size (when known) and every hash checked whose algorithm the
script knows (crc32, md5, sha1, sha256, sha512, git_blob_sha1; a single-part S3 ETag, an md5, is compared where the row records
one); a hash under any other name is not checked and is listed in the manifest field unchecked_hashes. Some sources publish no
hash; such a row has its size checked when the size is known, and its manifest line says checked "size only"
and carries the sha256 computed on download (unverified says so). A row with neither a hash nor a size is
downloaded within the cap and only its sha256 is computed (manifest fields size_unknown and unverified).
Rolling files (files the source regenerates in place, such as the lichess puzzle and evaluation databases,
or a row whose source_meta has rolling set) carry no hash and their size changes between the index and the
download: a size that differs is not a failure, the manifest line says checked "rolling file, size changed"
with the size the row records in expected_bytes, and the download may grow up to the cap. A row that sets
source_meta.rolling and also carries hashes is checked as usual, but a size or hash that differs is not a
failure either: the manifest line keeps the bytes and sha256 actually downloaded, sets differs_from_index
with the recorded values in expected_bytes and expected_sha256, and every such line carries the download
date in retrieved.
Rows built from a selection file (a collection tag campaign:<name>) carry their place in a task pool in
source_meta (pool_domain, pool_leaf, pool_path, role, unit_group, answer_for, origin_kind, pool_fields and the
others in CAMPAIGN_KEYS); the layout above follows them, and fetch_manifest.jsonl copies them as they are. Some
of these rows point at small files kept in the index repository itself (uri campaign_files/...); such a uri is
read from the same commit as the tables (or from the local --data copy), and the manifests record it as its absolute
URL at that commit (https://huggingface.co/datasets/<repo>/resolve/<commit>/campaign_files/...; for a local copy, at
--revision, else at main).
Examples:
python fetch.py --domain D3 --form spreadsheets-with-answers --sample 3 --out ./data
python fetch.py --source apache-arrow-testing --dry-run
python fetch.py --domain D1.6 --form test-suites --ext csv --limit 50 --out ./files
python fetch.py --source pypi --tier yes --max-size 1000000 --limit 20 --dry-run
python fetch.py --tag campaign:<name> --all --out ./collection
python fetch.py --data ./local-copy --where "media_type = 'application/pdf'" --limit 5
python fetch.py --source govdocs1-files --ext pdf --limit 20 --check-content --out ./govdocs
python fetch.py --revision <commit> --domain D1.6 --limit 50 --dry-run
python fetch.py --selection agentic-env-selection-<commit>.json --sample 3 --out ./data
Domains and forms: meta/catalog.parquet gives every source a domain and a form. The domain is a list of codes:
D1 to D10 are the subject areas and D<n>.<m> their leaves (D1.6 is a leaf of D1); multi marks content that spans
many domains (such as a forum or a web archive) and unclassified a source not classified yet. The form is one id
of lower-case words joined by "-" (such as test-suites or forums) and says what kind of material the source is.
--domain CODE selects the sources with a domain entry equal to CODE or, for a top-level code, any of its leaves
(D3 matches D3 and D3.5; D3.5 matches only D3.5); multi and unclassified match only themselves. --form ID
selects the sources of that form. Both options can be repeated (a source matches any of the values given);
given together, a source must match both, and with --source only the named sources that also match are read.
When no source matches, nothing is selected and the run says so. A code, form or source name that no source of
the catalog has is an error (exit code 2) naming the closest names. The domain codes and the forms are described
in catalog/domains.yaml of the pipeline repository and in the README of the index. Revisions of the index older
than these columns have no form column: --form then stops with an error and names that problem.
--tag campaign:<name> selects the rows of one collection (meta/tags.parquet, read only when --tag is given).
--selection FILE reads a selection file saved by the data page (Get the data): JSON with the ids of the sources
("sources"), the commit of the index ("revision") and the page's filters ("filters", a record only). Its sources are
read as --source options and its revision as --revision, so the same file selects the same sources at the same commit
later. A --revision given as well must name the same commit; a file that lists no source is an error.
The repository gets new commits every day. Reading the index from the Hub (the default, hf://datasets/...)
reads every table at one commit (hf://datasets/<repo>@<commit>/...), so a long query is not split across an
update. --revision <commit> names that commit, so the same command selects the same rows later; a tag or
branch name is also accepted and is resolved to its commit through the Hub API (with --print-sql it is
pinned as given). Without it
the script asks the Hub API for the commit the main branch points to now. Either way it prints the commit on
stderr and writes it into every manifest line and the summary (field revision). If the current commit cannot
be read, the script prints one warning line and reads the main branch (revision is then empty). A --data
root that already names a revision (@...) is read as given; --revision cannot be combined with it. With a
local --data copy (or a URL prefix that is not hf://datasets/...) --revision only records which commit that
copy holds: the value is written as given into the manifest lines, the summary and
fetch_run.json, and are not checked against the Hub.
Requirements: Python 3.10 or newer, the duckdb package and the huggingface_hub package (pip install duckdb
huggingface_hub; huggingface_hub resolves the index commit and the hf:// addresses). Downloads use only the
standard library (plus sevenzip.py for 7z members, which is taken from next to this script or else from the
index repository at the commit read, and the zstandard package for --decompress of .zst).
What is read: meta/catalog.parquet (one row per source) first; then, for the sources it resolves, their data files
(data/<source>/*/*.parquet, or with --tag only the batches that carry the tags) and only their rows of
meta/batches.parquet, meta/bench_overlap.parquet and meta/bench_checked.parquet (these tables are sorted by
source, so a filtered read over HTTP touches few of their row groups), and
meta/sources.json. meta/tags.parquet is read only with --tag. Those reads run in parallel; a selection whose
sources hold at most LOCAL_ROWS rows by the catalog is copied into memory once, a larger one is read in place.
Memory: DuckDB may use at most --memory-limit (default: the smaller of 4GB and a quarter of the machine's
memory) and writes what does not fit into a spill directory, --temp-dir or else a folder .fetch_spill under
--out that is removed at the end. Spill files are capped at 100GB by default; DUCKDB_MAX_TEMP changes that
limit. DuckDB runs one thread per GB of the memory limit (at least one, at most the number of CPUs;
--threads sets it). The rows are first picked with only the columns the conditions read, then copied
whole to the spill directory and sorted in parts of at most a quarter of the limit each, so a selection
larger than the limit spills to disk instead of failing. Raise --memory-limit when a large selection runs
slowly because it spills.
Ways of fetching that the script supports (the unit column of meta/sources.json says which one a source uses):
whole files over HTTP(S) (s3:// and hf:// addresses are turned into their public HTTPS form); byte ranges
(HTTP Range, the server must answer 206); WARC or ARC records (the range is one gzip member: it is
decompressed, the WARC and HTTP headers are removed and the payload hash is checked); members of zip
archives (the local header and the compressed bytes are read with Range requests, then inflated and checked
against size and CRC32); API responses (the body field is taken from the JSON response). Members of packages:
wheels, jars and other zip files through their central directory (Range requests); sdists, npm .tgz and
.crate files by downloading the whole package (within the cap; kept in a temporary directory for the run)
and taking the member out; members of 7z archives with sevenzip.py next to this script (a solid block is
decoded from its start up to the member, within the cap). Members of tar archives stored as gzip (the arXiv
source bundles): the range is one gzip member, decompressed and checked against the CRC32 and length of its
trailer. Single lichess games (rows with a game id): the public export API, one request per second and a full
minute of waiting after HTTP 429; rows without a game id are fetched as the files they point to.
The duplicate criterion has no table: it is resolved here, over your own selection, after every other criterion
(DuckDB window functions over the rows the others keep, so the copy kept is one you get). Of rows that share a
natural key (source, uri, range_offset, member_path) only the newest version is kept, by collection time: the
latest batch, then the latest part file of the batch (part files are numbered in the order they are written and
part-tail.parquet holds the newest rows; a row corrected later is written into a new part file while its old
version stays), and its manifest line says natural_key_conflict; rows of a superseded snapshot are removed; of
rows with the same sha256, sha1 or md5 (md5 with the same size) one copy is kept, the first by the source's
registry order, then source, batch and place. A selection of one source keeps its rows whose copy is in another
source. The benchmark criterion: rows
found in public benchmark tasks (meta/bench_overlap.parquet, hit classes benchmark_copy, task_file and
data_address, by row or by whole collection) and rows of collections awaiting a ruling are removed as matched a
benchmark; rows whose data file is not listed in meta/bench_checked.parquet as compared are removed apart, as not
compared with the benchmark list yet (--allow-not-compared keeps them; every published data file is compared at
every release, so a file not listed belongs to an older revision of the index, or the release has not compared
it yet). Truncated rows and empty files stay in.
Sizes and caps: a cap applies only when fetching, it never removes a row from the selection. By default every
row has the overall cap (meta/size_caps.json: the 99th percentile of the sizes of all benchmark task files), and
under the profile also at most 20 MB; --max-size N uses N bytes for every row instead. To leave large rows out of
the selection, the size criterion does it at 20 MB and --max-size-filter N at N bytes (rows of unknown size stay
for both). A row whose known size is above its cap is not downloaded; a row of unknown size (manifest field
size_unknown) is downloaded until the cap. Both are recorded with status too_large, which is not a failure.
--decompress also decompresses .gz, .bz2 and .zst files within the cap. A downloaded file that turns out to be a
Git LFS pointer (a small text file naming the real object) is refused as failed.
Requester-pays buckets (such as the arXiv source bundles on S3) are charged to your own AWS account: set
AWS_ACCESS_KEY_ID and AWS_SECRET_ACCESS_KEY (and AWS_SESSION_TOKEN for temporary credentials). The script
signs those requests itself (AWS Signature Version 4) and contains no credentials. Without them such rows are
skipped with the reason.
Rows that need a login, a form or an access request (field access.needs_auth of the full pointer, for example
guestbook, restricted, gated or kaggle_token) are skipped: no request is sent, the manifest line has status
skipped, the reason and the needs_auth value. Embargoed rows are skipped until the date in
access.embargo_until and fetched from that day on. Requester-pays rows are fetched when the AWS credentials
above are set. The summary printed at the end counts the skipped rows by value (needs_auth_skipped). Any
other address form is reported as unsupported.
Content check (--check-content): after a verified download (and after --decompress) each file gets three
checks, recorded in the manifest field content_check. scanned_pdf: a PDF with no fonts (pdffonts) whose
first five pages hold fewer than 20 characters of text per page (pdftotext), most likely a scanned image.
error_page: an HTML, XML or plain text file whose title names an error (404, not found, access denied and
the like), or whose text is under 3000 characters and names one in its first 1500 characters. ext_mismatch:
the type that file --mime-type reports is not one of the types expected for the extension. Each check is
flagged, clean, not_applicable or skipped; a check is skipped when a system tool it needs (file, pdffonts,
pdftotext from poppler-utils) is not installed or fails on the file, and the reason is written in
content_check.skipped. A flagged or skipped check is not a failure and never changes the status.
A download whose size or hash does not match its row (a connection cut off mid-transfer can end early without
an error) is tried again, by default 2 more times (--verify-retries) after waiting 2 and then 4 seconds; network
errors that are likely to pass have their own retries. When a download had to be tried again, its manifest
line says how many times it was downloaded (attempts) and why each earlier try was refused (attempt_reasons).
Where files go: every file is written under --out, in the layout above. The domain, source, collection and
path parts are cleaned the same way; a row whose path would still land outside --out is not written and gets
status unsafe_path (the run goes on). file:// addresses are not fetched; to use a local copy pass --data.
Downloads, decompression of responses, WARC and gzip members, archives and 7z headers all stop at the cap.
AWS signatures are sent only to S3 hosts, and any redirect to another host drops the Authorization and
x-amz-* headers.
Running again with the same --out: a file already there whose size and sha256 match its row is recorded ok
without downloading it (already_present); a partly downloaded file (.part) is resumed with a Range request
and started over when the server answers with the whole file. _meta/fetch_manifest.jsonl is appended to, never
overwritten; each line carries run_id (the start time of its run). A line records the size and sha256 the
row expects (expected_size, expected_sha256) and, on failure, what was downloaded (got_bytes, got_sha256); a
file that was already at the destination of a failed row is renamed to <name>.stale (stale_path).
Local reuse: with --local-root DIR (repeatable; or the ARTPOOL_LOCAL_ROOTS variable, directories separated by
':') and --staging DIR (or ARTPOOL_STAGING, where a file fetched elsewhere was placed), a whole file whose size
and every published hash match its row is copied from there with no request; the manifest line records
obtained: reused or staged and local_path, and every other row obtained: fetched. A local file of the same name
or size whose hashes do not match is never used and is reported on stderr. The run ends with the line
"local reuse: N reused, N staged, N fetched, N refused" on stderr and local_reuse in the summary.
No request is made for a reused or staged file, so its line keeps the provenance of the original fetch of the
same sha256: retrieved (the day the bytes were obtained from upstream), fetched_from, fetched_at, route and
provenance_record (where it was read). A reused file takes the earliest dated record among the fetch manifests
(fetch_manifest.jsonl: retrieved, else the date of run_id) and pool manifests (_meta/manifest.jsonl) under the
local roots; a staged file takes the line of staging_attempts.jsonl that the staging step (artpool.stage_receive)
wrote when it streamed the file in. With no such record retrieved is "unknown" and retrieved_reason says why; it
is never the date of this run, which is recorded apart as reused_at (UTC, YYYY-MM-DDTHH:MM:SSZ).
Network: --proxy URL (or the HTTPS_PROXY, HTTP_PROXY and ALL_PROXY variables) sends every request through a
proxy; socks5:// and socks5h:// proxies need the PySocks package (pip install pysocks). The DuckDB read of
the index uses the same HTTP proxy; DuckDB cannot use a SOCKS proxy, so with one read a local copy of the
index (--data). --contact TEXT adds your contact (an email or URL) to the User-Agent, as some APIs ask.
API sources get at least one second between requests to the same host (more for hosts that ask for it).
One progress line per row is printed on stderr (--quiet turns them off).
The manifest status is one of ok, failed, too_large, skipped, unsafe_path, unsupported. A --dry-run downloads
nothing and writes one line for every file of the selection, as many as the files the summary counts
(selection.files: the files of every unit and the companion files): status selected for a file that would be
fetched, removed for a file of a unit (or a companion file) that a criterion of the profile removes (removed_by
names the criterion, reason says why, kept_with the option that keeps it), and not_taken for a unit left out by
--sample or --limit or a companion file of a source none of whose units is taken. The exit code is 1 when some
row failed or had an unsafe path, and 2 when the index could not be read or a source, domain or form name is not
in the catalog (the message says why).
Deletes: <dest>.part of a download (fetch_file), on an error that cannot resume, past the size cap or failing the
row's check: a temporary file fetch_file wrote; the download is fetched again from the row's url.
Deletes: the package directory fetch-packages-* (tempfile.mkdtemp, download_package) and its files, one per package
url named by the first 24 hex digits of the url's sha256, at the end of the run, on a failed download or when the
package cache passes its cap: temporary files download_package wrote; a package is fetched again from its url.
Deletes: <output>.part of a decompression (decompress_file): a temporary file decompress_file wrote.
Deletes: <upstream file>.unit of extract_unit, when the unit cannot be made or does not match the index: a temporary
file extract_unit wrote with the transform steps.
Deletes: the compressed file of a row fetched with status ok, once decompress_file has written its decompressed
file: recomputable, downloaded again from the row's url by fetch_unit, which checks it against the row.
Deletes: <dest>.part of a local reuse copy whose bytes changed while copied (LocalFiles.take): a temporary file take
wrote, copied from the local file.
Deletes: a download that is a Git LFS pointer file (fetch_one): recomputable, downloaded again from the row's url.
Deletes: the spill directory .fetch_spill under --out at the end of the run (not a --temp-dir one): DuckDB's
temporary files of this run.
"""
from __future__ import annotations
import argparse
import bz2
import copy
import datetime
import gzip
import hashlib
import hmac
import http.client
import io
import json
import os
import posixpath
import re
import shutil
import socket
import struct
import subprocess
import sys
import tarfile
import tempfile
import time
import urllib.error
import urllib.parse
import urllib.request
import zlib
from pathlib import Path
DEFAULT_REPO = "Battam/agentic-env-index"
TIERS = ("yes", "conditional", "no", "unknown")
# hit classes of meta/bench_overlap.parquet that the default filter removes
OVERLAP_REMOVE = ("benchmark_copy", "task_file", "data_address")
# meta/catalog.parquet: one row per source with its domain codes (list) and its form (--domain, --form)
CATALOG = "meta/catalog.parquet"
# a domain code (D<n> or D<n>.<m>) or one of the formal values, and a form id (lower-case words joined by "-")
DOMAIN_RE = re.compile(r"D[1-9][0-9]*(?:\.[1-9][0-9]*)?|multi|unclassified")
FORM_RE = re.compile(r"[a-z0-9]+(?:-[a-z0-9]+)*")
HASH_COLS = (("sha256", 32), ("sha1", 20), ("md5", 16), ("crc32", 4))
LICENSE_COLS = (("license_spdx", "spdx"), ("license_training_ok", "training_ok"),
("license_redistribution_ok", "redistribution_ok"), ("license_notes", "notes"))
ZIP_COLS = (("local_header_offset", "zip_local_header_offset"), ("compression_method", "zip_compression_method"),
("compressed_size", "zip_compressed_size"))
TRUNC_KEY = "content_truncated"
API_BODY_DEFAULT_FIELD = "items.0.body"
# the default User-Agent is built only from these three; tests compare the whole string against them
TOOL_NAME = "agentic-env-index-fetch"
TOOL_VERSION = "1"
DATASET_URL = f"https://huggingface.co/datasets/{DEFAULT_REPO}"
UA = f"{TOOL_NAME}/{TOOL_VERSION} (+{DATASET_URL})"
CHUNK = 1 << 20
UNKNOWN_SIZE_CAP = 100_000_000 # used only when a row carries no cap (a table without max_size_bytes)
RETRIES = 3
BACKOFF = 2.0
# a download whose size or hash does not match its row is tried this many more times (a connection that is cut
# off can end the body early without an error)
VERIFY_RETRIES = 2
MISMATCH = re.compile(r"(?:\b(?:size|sha256|sha1|sha512|md5|git_blob_sha1|crc32|CRC32)|etag \(single-part md5\)) "
r"differs|does not match the size and CRC32|gzip member is incomplete")
# DuckDB memory: the smaller of this and a quarter of the machine's memory, unless --memory-limit says otherwise
MEMORY_CAP = 4 << 30
# DuckDB threads: one per this much of the memory limit (a sort or join needs room per thread; with less, a query
# over a large selection fails with an out-of-memory error instead of spilling)
THREAD_MEMORY = 1 << 30
# the share of the memory limit one sorted part of the selection may take (see part_queries)
PART_SHARE = 0.25
SPILL_DIR = ".fetch_spill"
# DuckDB settings used when the tables are read over the network (hf:// or another URL). Hugging Face counts
# requests in 5-minute windows and answers 429 when a window is used up; DuckDB reads one file with several
# requests, and a full query touches thousands of files. Retries wait 2, 4, 8, ... 256 seconds (510 seconds
# in all), so the last retry comes after a whole window has passed; each request may take up to 120 seconds;
# fewer threads keep fewer requests in flight. These values are provisional: lower them if your reads never
# hit a limit, raise them if they still do.
HTTP_SETTINGS = {"http_retries": 8, "http_retry_wait_ms": 2000, "http_retry_backoff": 2, "http_timeout": 120}
REMOTE_THREADS = 4
# writer side (#268): the tables under meta/ that a reader filters by source (batches, bench_overlap, bench_checked,
# tags) are written sorted by source in row groups of this many rows, so that a filtered read over
# HTTP touches only the row groups of the sources it reads
META_ROW_GROUP = 32_768
ZIP_LOCAL_SIG = b"PK\x03\x04"
ZIP_LOCAL_LEN = 30
MANIFEST = "fetch_manifest.jsonl"
# what was read and with which arguments (to_pool.py copies it into _meta/delivery.json, local paths as
# placeholders)
RUN_FILE = "fetch_run.json"
SIZE_ONLY = "size only"
ROLLING_CHANGED = "rolling file, size changed"
NO_HASH_MEMBER = "the source publishes no hash for this member; sha256 computed on download"
# files the source regenerates in place, so the size in the index goes stale (source, collection); a row can
# also say so itself with source_meta.rolling
ROLLING_FILES = frozenset({("lichess", "puzzle"), ("lichess", "eval")})
# fields of source_meta copied into the manifest line as they are (rows built from a selection file)
CAMPAIGN_KEYS = ("campaign", "pool_domain", "pool_leaf", "pool_path", "pool_source", "pool_order", "role",
"unit_group", "answer_for", "origin_kind", "agency", "derived_from", "rolling", "transform",
"upstream_sha256", "upstream_bytes", "unit_sha256", "unit_bytes", "content_sha256", "pool_fields",
"original_name", "generated_by", "expand", "expand_rule")
# a uri without a scheme that starts here names a file in the index repository, at the commit the tables are read at
REPO_FILES = "campaign_files/"
# ---------- SQL ----------
def sql_str(s: str) -> str:
return "'" + str(s).replace("'", "''") + "'"
IS_ROW = "starts_with(coalesce(p.extra, ''), '{\"_row\":')"
def _absent(key: str) -> str:
return f"coalesce(json_contains(json_extract(p.extra, '$._absent'), '\"{key}\"'), false)"
def tier_sql(field: str = "training_ok") -> str:
"""License tier of a row: the row's own license_override when it has one, otherwise the batch tier."""
anycol = "(" + " OR ".join(f"p.{c} IS NOT NULL" for c, _ in LICENSE_COLS) + ")"
own = (f"CASE WHEN {IS_ROW} THEN json_extract_string(p.extra, '$._row.license_override.{field}') "
f"WHEN json_type(p.extra, '$.license_override') IS NOT NULL "
f"THEN json_extract_string(p.extra, '$.license_override.{field}') "
f"WHEN {anycol} THEN p.license_{field} "
f"WHEN NOT {_absent('license_override')} THEN b.const_{field} END")
v = f"coalesce(nullif({own}, ''), b.{field})"
return f"(CASE WHEN {v} IN ('yes', 'conditional', 'no') THEN {v} ELSE 'unknown' END)"
def truncated_sql() -> str:
"""Why the stored content was cut short (NULL when it was not)."""
own = (f"CASE WHEN {IS_ROW} THEN json_extract_string(p.extra, '$._row.source_meta.{TRUNC_KEY}') "
f"WHEN json_type(p.extra, '$.source_meta') IS NOT NULL "
f"THEN json_extract_string(p.extra, '$.source_meta.{TRUNC_KEY}') "
f"WHEN NOT {_absent('source_meta')} THEN b.const_truncated END")
return f"nullif(coalesce(p.truncated, {own}), '')"
def own_sql(key: str, const: str, *, text: bool = True) -> str:
"""A top-level field of the full pointer: the row's own value (in extra) when it has one, otherwise the
source constant (a column of the batch table), unless the row lacks the field."""
f = "json_extract_string" if text else "json_extract"
return (f"(CASE WHEN {IS_ROW} THEN {f}(p.extra, '$._row.{key}') "
f"WHEN json_type(p.extra, '$.{key}') IS NOT NULL THEN {f}(p.extra, '$.{key}') "
f"WHEN NOT {_absent(key)} THEN {const} END)")
def source_meta_sql(key: str) -> str:
"""One key of source_meta; key is an SQL expression (a quoted name or a column such as b.meta_key)."""
return (f"(CASE WHEN {IS_ROW} THEN json_extract_string(p.extra, '$._row.source_meta.' || {key}) "
f"WHEN json_type(p.extra, '$.source_meta') IS NOT NULL "
f"THEN json_extract_string(p.extra, '$.source_meta.' || {key}) "
f"WHEN NOT {_absent('source_meta')} THEN json_extract_string(b.const_source_meta, '$.' || {key}) END)")
def meta_value_sql() -> str:
"""The source_meta value that some tags depend on (forum instance, mailing list, site), see b.meta_key."""
return f"(CASE WHEN b.meta_key IS NOT NULL THEN {source_meta_sql('b.meta_key')} END)"
def own_content_sql() -> str:
"""The row's own content categories as JSON text (NULL when the row takes them from its batch)."""
return f"CAST({own_sql('content', 'b.const_content', text=False)} AS VARCHAR)"
def hash_scope_sql() -> str:
"""What the hashes cover: file (default), http_payload (a WARC record's payload) or api_body."""
return f"coalesce({own_sql('hash_scope', 'b.const_hash_scope')}, 'file')"
def hash_sql(alg: str) -> str:
"""One hash of the row as lowercase hex (NULL when the row has none)."""
hx = f"coalesce(json_contains(json_extract(p.extra, '$._hx'), '\"{alg}\"'), false)"
return (f"(CASE WHEN {IS_ROW} THEN json_extract_string(p.extra, '$._row.hashes.{alg}') "
f"WHEN json_type(p.extra, '$.hashes.{alg}') IS NOT NULL THEN json_extract_string(p.extra, '$.hashes.{alg}') "
f"WHEN {hx} THEN NULL ELSE lower(hex(p.{alg})) END)")
def uri_sql() -> str:
"""The pointer's uri before the address swap (the uri column holds the directly downloadable address)."""
t, f, s = "b.uri_swap_to", "b.uri_swap_from", "b.uri_swap_suffix"
return (f"(CASE WHEN {t} IS NOT NULL AND json_extract_string(p.extra, '$._uri_orig') IS NULL THEN "
f"CASE WHEN starts_with(p.uri, {t}) AND ends_with(p.uri, {s}) AND length(p.uri) >= length({t}) + length({s}) "
f"THEN {f} || substr(p.uri, length({t}) + 1, length(p.uri) - length({t}) - length({s})) END "
f"ELSE p.uri END)")
def pid_sql() -> str:
"""pointer_id as written in meta/sources.json (layout.pointer_id), as one SQL expression."""
par = "p.parent_pointer_id"
rest = f"substr({par}, strpos({par}, ':') + strpos(substr({par}, strpos({par}, ':') + 1), ':') + 1)"
head = "p.source || ':' || p.collection || ':'"
tail = (f"array_to_string(list_slice(string_split({uri_sql()}, '/'), -b.pid_segments, -1), '/') || "
f"CASE WHEN b.pid_at_offset THEN '@' || CAST(p.range_offset AS VARCHAR) ELSE '' END")
return (f"(CASE WHEN {IS_ROW} THEN json_extract_string(p.extra, '$._row.pointer_id') "
f"WHEN {_absent('pointer_id')} THEN NULL "
f"WHEN json_type(p.extra, '$.pointer_id') IS NOT NULL THEN json_extract_string(p.extra, '$.pointer_id') "
f"WHEN json_type(p.extra, '$.pid') IS NOT NULL THEN {head} || json_extract_string(p.extra, '$.pid') "
f"WHEN {par} IS NOT NULL AND p.member_path IS NOT NULL THEN "
f"CASE WHEN length({par}) - length(replace({par}, ':', '')) >= 2 "
f"THEN {head} || {rest} || '!/' || p.member_path END "
f"WHEN b.pid_segments IS NOT NULL THEN {head} || {tail} END)")
def size_bucket_sql(col: str = "p.size_bytes") -> str:
return (f"(CASE WHEN {col} IS NULL OR {col} < 0 THEN 'unknown' WHEN {col} < 10000 THEN '<10KB' "
f"WHEN {col} < 1000000 THEN '10KB-1MB' WHEN {col} < 100000000 THEN '1MB-100MB' "
f"WHEN {col} < 1000000000 THEN '100MB-1GB' ELSE '>1GB' END)")
def same_key(a: str, b: str = "p") -> str:
return (f"{a}.source = {b}.source AND {a}.uri = {b}.uri AND {a}.range_offset IS NOT DISTINCT FROM {b}.range_offset "
f"AND {a}.member_path IS NOT DISTINCT FROM {b}.member_path")
def rows_from(files: str) -> str:
"""SELECT over the row tables that adds where each row sits: row_file (the last three parts of the file path,
<source>/<batch>/<part file>) and row_index (the row number in that file, from 0). The duplicate criterion
orders rows by them as the last keys; reading them costs nothing extra."""
return ("SELECT * EXCLUDE (filename, file_row_number), "
"regexp_extract(replace(filename, '\\', '/'), '[^/]+/[^/]+/[^/]+$') AS row_file, "
"file_row_number AS row_index "
f"FROM read_parquet({files}, union_by_name = true, filename = true, file_row_number = true)")
# ---------- duplicates, resolved at read time ----------
# The duplicate criterion runs over the reader's own selection: the rows that pass every other criterion, with
# DuckDB window functions (dup_sql), so the copy kept is one the reader gets. A row is a duplicate for the first of
# DUP_REASONS that holds:
# natural_key another row has the same natural key (source, uri, range_offset, member_path) and was collected
# later: of one natural key the newest version is kept, ordered by collection time, newest first: not
# superseded, then the latest batch, then the latest part file of the batch (part-<n>.parquet are
# numbered in the order they are written, part-tail.parquet holds the newest rows; a corrected row is
# written into a new part file and its old version stays), then the last row of the file (that row
# has natural_key_conflict true)
# superseded the row belongs to a snapshot that a newer batch of the same unit replaces (SUPERSEDE: the
# source_meta key that names the unit; newer by batch_date_sql, then "revised", then batch name)
# same_sha256, same_sha1, same_md5
# another row with the same hash and hash scope (md5 also the same size_bytes) comes first in keep
# order: rows the first two reasons leave, then the source's registry order (registry_order of
# meta/batches.parquet), then source, batch, uri, range_offset, member_path, row_file, row_index
DUP_REASONS = ("natural_key", "superseded", "same_sha256", "same_sha1", "same_md5")
DUP_HASHES = (("sha256", 64), ("sha1", 40), ("md5", 32))
NATURAL_KEY = ("source", "uri", "range_offset", "member_path")
# source -> the source_meta key that names the unit of a snapshot; of one unit only the newest batch is kept
SUPERSEDE = {"stackexchange-dump": "site"}
# the row's own columns the windows read (besides DUP_INPUTS)
DUP_ROW_COLS = ("source", "batch", "uri", "range_offset", "member_path", "row_file", "row_index", "size_bytes")
DUP_INPUTS = ("dup_scope",) + tuple(f"dup_{a}" for a, _ in DUP_HASHES) + ("dup_unit", "dup_ord", "dup_date",
"dup_sdate")
# the working columns dup_sql adds and drops again
DUP_WORK = ("dup_rev", "dup_sup", "dup_nk_rank", "dup_nk_n") + tuple(f"dup_r_{a}" for a, _ in DUP_HASHES)
DUP_KEEP = ("dup_sup", "dup_nk_rank > 1", "dup_ord", "source", "batch", "uri", "range_offset", "member_path",
"row_file", "row_index")
def batch_date_sql(x: str) -> str:
"""The date in the text x (a batch name) as YYYYMMDD, '' when it has none: the first match of
YYYY[-]MM[-]DD."""
return f"replace(regexp_extract(coalesce({x}, ''), '[0-9]{{4}}-?[0-9]{{2}}-?[0-9]{{2}}'), '-', '')"
def dup_inputs_sql() -> list:
"""The DUP_INPUTS as SELECT items over p JOIN b: what the hashes cover (hash_scope_sql), the three hashes as
lowercase hex, the unit of a SUPERSEDE source, the source's registry order, the date of the batch name and, for
a SUPERSEDE source, the date its supersession compares (the batch name's, else the one in source_meta.batch)."""
unit = ("CASE p.source " + " ".join(f"WHEN {sql_str(s)} THEN nullif({source_meta_sql(sql_str(k))}, '')"
for s, k in sorted(SUPERSEDE.items())) + " END")
srcs = ", ".join(sql_str(s) for s in sorted(SUPERSEDE))
d = batch_date_sql("p.batch")
sd = (f"CASE WHEN p.source IN ({srcs}) THEN coalesce(nullif({d}, ''), "
f"{batch_date_sql(source_meta_sql(sql_str('batch')))}) ELSE '' END")
return ([f"{hash_scope_sql()} AS dup_scope"] + [f"{hash_sql(a)} AS dup_{a}" for a, _ in DUP_HASHES]
+ [f"{unit} AS dup_unit", "b.registry_order AS dup_ord", f"{d} AS dup_date", f"{sd} AS dup_sdate"])
def dup_sql(rows: str) -> str:
"""The rows of the relation rows (DUP_ROW_COLS, DUP_INPUTS and any other columns), each with duplicate_reason
(the first of DUP_REASONS that holds, NULL for a row that is kept) and natural_key_conflict (true for the row
kept of a natural key that other rows share), without DUP_INPUTS. Window functions only, over every row of rows:
the caller gives the rows the other criteria keep, so the copy kept is one of them. A hash is used when it is
lowercase hex of its length (md5 only with a size)."""
valid = ", ".join(f"CASE WHEN length(dup_{a}) = {n} AND regexp_full_match(dup_{a}, '[0-9a-f]+')"
+ (" AND size_bytes IS NOT NULL" if a == "md5" else "") + f" THEN dup_{a} END AS dup_{a}"
for a, n in DUP_HASHES)
nk = ", ".join(NATURAL_KEY)
keep = ", ".join(DUP_KEEP)
ranks = ", ".join(f"CASE WHEN dup_{a} IS NOT NULL THEN row_number() OVER (PARTITION BY dup_scope, dup_{a}"
+ (", size_bytes" if a == "md5" else "") + f" ORDER BY {keep}) END AS dup_r_{a}"
for a, _ in DUP_HASHES)
nk_reason, sup_reason, *same = DUP_REASONS
reason = (f"CASE WHEN dup_nk_rank > 1 THEN '{nk_reason}' WHEN dup_sup THEN '{sup_reason}' "
+ " ".join(f"WHEN dup_r_{a} > 1 THEN '{r}'" for (a, _), r in zip(DUP_HASHES, same)) + " END")
s1 = f"SELECT * REPLACE ({valid}),\n contains(lower(batch), 'revised') AS dup_rev\nFROM ({rows})"
s2 = ("SELECT *, dup_unit IS NOT NULL AND batch <> arg_max(batch, struct_pack(d := dup_sdate, r := dup_rev, "
f"b := batch)) OVER (PARTITION BY source, dup_unit) AS dup_sup\nFROM ({s1})")
s3 = (f"SELECT *, row_number() OVER (PARTITION BY {nk} ORDER BY dup_sup, dup_date DESC, dup_rev DESC, "
f"batch DESC, row_file DESC, row_index DESC) AS dup_nk_rank,\n count(*) OVER (PARTITION BY {nk}) AS dup_nk_n\n"
f"FROM ({s2})")
s4 = f"SELECT *,\n {ranks}\nFROM ({s3})"
return (f"SELECT * EXCLUDE ({', '.join(DUP_INPUTS + DUP_WORK)}),\n {reason} AS duplicate_reason,\n"
f" dup_nk_n > 1 AND dup_nk_rank = 1 AS natural_key_conflict\nFROM ({s4})")
def tag_key_sql() -> str:
"""Join condition between a row p and its lines in meta/tags.parquet (t)."""
return ("t.source = p.source AND t.batch = p.batch AND t.collection IS NOT DISTINCT FROM p.collection "
f"AND t.ext IS NOT DISTINCT FROM p.ext AND t.meta_value IS NOT DISTINCT FROM {meta_value_sql()} "
f"AND t.content IS NOT DISTINCT FROM {own_content_sql()}")
def checked_sql(col: str = "checked") -> str:
"""True for a row whose file and collection pass column col of meta/bench_checked.parquet (view c): col
checked says the rows were compared with the benchmark list, col default_keep says the default filter keeps
them. Every published data file is listed (the release compares every file); a file not listed belongs to a
revision older than that and does not pass. A collection listed with scope container (a collection whose name
matches a benchmark and that awaits a ruling) must pass too."""
return f"{checked_file_sql(col)} AND {not_pending_sql(col)}"
def checked_file_sql(col: str = "checked") -> str:
"""True for a row whose data file passes column col of meta/bench_checked.parquet (scope file): with col
checked, the file was compared with the benchmark list."""
return f"coalesce((SELECT bool_and(c.{col}) FROM c WHERE c.scope = 'file' AND c.row_file = p.row_file), false)"
def not_pending_sql(col: str = "checked") -> str:
"""True unless the row's collection is listed in meta/bench_checked.parquet with scope container and fails column
col (a collection whose name matches a benchmark and that awaits a ruling)."""
return (f"NOT EXISTS (SELECT 1 FROM c WHERE c.scope = 'container' AND NOT c.{col} AND c.source = p.source AND "
f"c.collection = split_part(p.collection, '@', 1))")
def default_conditions() -> list:
"""The row conditions of the default filter, one (name, SQL condition) per rule: they remove copies of benchmark
data (meta/bench_overlap.parquet) and the rows meta/bench_checked.parquet does not keep by default (column
default_keep). The duplicate copies are removed after them, over the rows they keep (dup_sql). Tables: p rows,
b batches, o bench_overlap, c bench_checked. License tiers, sizes and versions are not part of it."""
rem = ", ".join(sql_str(c) for c in OVERLAP_REMOVE)
return [("not_in_benchmark_row", f"NOT EXISTS (SELECT 1 FROM o WHERE o.scope = 'row' AND o.hit_class IN ({rem}) "
f"AND {same_key('o')})"),
("not_in_benchmark_container", f"NOT EXISTS (SELECT 1 FROM o WHERE o.scope = 'container' AND "
f"o.hit_class IN ({rem}) AND o.source = p.source AND "
f"o.collection = split_part(p.collection, '@', 1))"),
("checked_for_benchmarks", checked_sql("default_keep"))]
def tag_condition(tags) -> str:
vals = ", ".join(sql_str(t) for t in tags)
return f"EXISTS (SELECT 1 FROM t WHERE {tag_key_sql()} AND t.tag IN ({vals}))"
# ---------- the default profile ----------
# The criteria of the default profile, in the order a removed unit is counted under (the first one it fails), each
# with the option that relaxes it and the reason a removed unit is reported with. --all turns them all off;
# --allow-benchmark also turns off "not compared". The duplicate criterion is judged last, over the units every other
# criterion keeps (dup_sql), so a unit it removes failed no other criterion and the copy it keeps is one the reader
# gets.
CRITERIA = ("duplicate", "benchmark", "not compared", "license", "language", "personal data", "size")
RELAX = {"duplicate": "keep_duplicates", "benchmark": "allow_benchmark", "not compared": "allow_not_compared",
"license": "any_license", "language": "any_language", "personal data": "allow_personal_data",
"size": "any_size"}
REASONS = {"duplicate": "a duplicate copy of another row", "benchmark": "matched a benchmark",
"not compared": "not compared with the benchmark list yet",
"license": "the license does not let the files be shipped",
"language": "recorded in a language other than English",
"personal data": "marked as carrying personal data", "size": "above 20 MB"}
PROFILE_MAX_BYTES = 20_000_000 # the size criterion and the download cap under the profile (20 MB)
PII_REMOVE = ("present", "suspected") # catalog pii.level values the personal-data criterion removes
PD_REMOVE = ("pseudonymous", "identifiable") # pool_fields personal_data values it removes
# a natural-language code in source_meta.language: ISO 639-1 or 639-2 in lower case with optional subtags; several
# codes are separated by spaces, commas or semicolons. Capitalised values (Python, Go, COBOL) name programming
# languages and are not codes. en, eng: English; zxx: no linguistic content; und: undetermined (as if none).
LANG_CODE = r"[a-z]{2,3}(-[A-Za-z0-9]{2,8})*"
LANG_KEEP = ("en", "eng", "zxx", "und")
_LANG_EDGE = (r"(^|[\s,;])", r"($|[\s,;])")
def language_ok_sql() -> str:
"""True when the row records no natural-language code, or one of them is English or language-free. The code is
source_meta.language, else source_meta.labels.language (the labels of collections built from the search's
candidates)."""
v = (f"coalesce({source_meta_sql(chr(39) + 'language' + chr(39))}, "
f"{source_meta_sql(chr(39) + 'labels.language' + chr(39))}, '')")
a, z = _LANG_EDGE
keep = "|".join(LANG_KEEP)
return (f"(NOT regexp_matches({v}, '{a}{LANG_CODE}{z}') "
f"OR regexp_matches({v}, '{a}({keep})(-[A-Za-z0-9]{{2,8}})*{z}'))")
def personal_ok_sql() -> str:
"""True when neither the source (catalog pii.level, view s) nor the row (column sensitive, pool_fields
personal_data) is marked as carrying personal data."""
lv = ", ".join(sql_str(x) for x in PII_REMOVE)
pf = f"coalesce({source_meta_sql(chr(39) + 'pool_fields' + chr(39))}, '')"
pd = "|".join(PD_REMOVE)
return (f"(p.sensitive IS NULL AND p.source NOT IN (SELECT s.source FROM s WHERE s.pii_level IN ({lv})) "
f"AND NOT regexp_matches({pf}, '\"personal_data\",\\s*\"({pd})\"'))")
def profile_conditions(relaxed=()) -> list:
"""The criteria of the default profile that are on, [(name, SQL condition that is true when the row passes)], in
CRITERIA order; the duplicate criterion has no row condition (None): cand_steps applies dup_sql over the rows the
others keep. Tables: p rows, b batches, o bench_overlap, c bench_checked, s catalog."""
dc = dict(default_conditions())
sql = {"duplicate": None,
"benchmark": " AND ".join(f"({x})" for x in (dc["not_in_benchmark_row"], dc["not_in_benchmark_container"],
not_pending_sql("default_keep"))),
"not compared": checked_file_sql("default_keep"),
"license": f"({tier_sql('training_ok')} = 'yes' AND {tier_sql('redistribution_ok')} IN ('yes', 'conditional'))",
"language": language_ok_sql(),
"personal data": personal_ok_sql(),
"size": f"(p.size_bytes IS NULL OR p.size_bytes <= {PROFILE_MAX_BYTES})"}
return [(n, sql[n]) for n in CRITERIA if n not in set(relaxed)]
def role_sql() -> str:
"""The row's role in its collection (source_meta.role): unit, companion or answer; unit for a row without one."""
return f"coalesce({source_meta_sql(chr(39) + 'role' + chr(39))}, 'unit')"
def unit_sql() -> str:
"""The unit a row belongs to: source_meta.unit_group (shared by a unit's files and its answers), else the row
itself (row_file#row_index); NULL for a companion file, which belongs to its source."""
ug = source_meta_sql(chr(39) + "unit_group" + chr(39))
return (f"(CASE WHEN {role_sql()} = 'companion' THEN NULL "
f"ELSE coalesce({ug}, p.row_file || '#' || CAST(p.row_index AS VARCHAR)) END)")
def unit_key_sql() -> str:
"""The fixed order of units (--sample, --limit): for a row of its own its fetch order (fetch_order, the order
of earlier versions of this script), for a unit_group the sha256 of source and group."""
ug = source_meta_sql(chr(39) + "unit_group" + chr(39))
return f"(CASE WHEN {ug} IS NULL THEN {fetch_order()} ELSE sha256(p.source || chr(0) || {ug}) END)"
def catalog_columns(domains=(), forms=()) -> list:
"""The columns of meta/catalog.parquet that a selection by domains and forms reads."""
return ["source"] + (["domain"] if domains else []) + (["form"] if forms else [])
def catalog_view_sql(root: str, domains=(), forms=()) -> str:
"""The SELECT of view s: the catalog columns that domains and forms need, one row per source."""
return (f"SELECT {', '.join(catalog_columns(domains, forms))} "
f"FROM read_parquet({sql_str(root + '/' + CATALOG)})")
def domain_match_sql(col: str, domains) -> str:
"""True when the domain code in col matches one of domains: equal to it or, for a code D<n> or D<n>.<m>, one of
its leaves (it starts with the code and a dot); multi and unclassified match only themselves."""
out = []
for d in domains:
out.append(f"{col} = {sql_str(d)}")
if d.startswith("D"):
out.append(f"starts_with({col}, {sql_str(d + '.')})")
return "(" + " OR ".join(out) + ")"
def catalog_select_sql(domains=(), forms=()) -> str:
"""The sources of view s that match: any domain entry matches one of domains (when given) and the form is one
of forms (when given)."""
conds = []
if domains:
conds.append(f"s.source IN (SELECT e.source FROM (SELECT s.source, unnest(s.domain) AS code FROM s) e "
f"WHERE {domain_match_sql('e.code', domains)})")
if forms:
conds.append(f"s.form IN ({', '.join(sql_str(f) for f in forms)})")
return "SELECT DISTINCT s.source FROM s WHERE " + " AND ".join(conds)
def catalog_condition(domains=(), forms=()) -> str:
"""The row condition of --domain and --form: the row's source is one of the catalog sources that match."""
return f"p.source IN ({catalog_select_sql(domains, forms)})"
def fetch_order() -> str:
return ("sha256(concat_ws(chr(0), p.source, p.uri, coalesce(CAST(p.range_offset AS VARCHAR), ''), "
"coalesce(p.member_path, '')))")
def build_where(*, tags=(), exts=(), sources=(), tiers=None, min_size=None, max_size=None, where=None,
max_size_filter=None, domains=(), forms=()) -> list:
"""Your own WHERE conditions of the selection (the default profile is apart: profile_conditions and cand_steps).
max_size is accepted for older callers and ignored: a size cap applies when fetching (cand_steps), it does not
remove rows. max_size_filter removes the rows whose known size is larger (rows of unknown size stay). domains and
forms keep the rows of the sources that match them in meta/catalog.parquet (view s, catalog_condition)."""
conds = []
if tiers is not None:
conds.append(f"{tier_sql()} IN ({', '.join(sql_str(t) for t in tiers)})")
if min_size is not None:
conds.append(f"p.size_bytes >= {int(min_size)}")
if max_size_filter is not None:
conds.append(f"(p.size_bytes IS NULL OR p.size_bytes <= {int(max_size_filter)})")
if tags:
conds.append(tag_condition(tags))
if exts:
conds.append(f"lower(p.ext) IN ({', '.join(sql_str(e.lower().lstrip('.')) for e in exts)})")
if sources:
conds.append(f"p.source IN ({', '.join(sql_str(s) for s in sources)})")
if domains or forms:
conds.append(catalog_condition(domains, forms))
if where:
conds.append(f"({where})")
return conds
def _root(args) -> str:
return args.data.rstrip("/") if args.data else f"hf://datasets/{args.repo}"
def _data_files(root: str, sources=()) -> str:
if sources:
return "[" + ", ".join(sql_str(f"{root}/data/{s}/*/*.parquet") for s in sources) + "]"
return sql_str(f"{root}/data/*/*/*.parquet")
def _batch_files(root: str, batches) -> str:
return "[" + ", ".join(sql_str(f"{root}/data/{s}/{b}/*.parquet") for s, b in batches) + "]"
def views_sql(root: str, *, sources=(), batches=None, domains=(), forms=()) -> list:
"""The views p (rows), b, o, t, c, and s (meta/catalog.parquet: source, domain, form, pii_level, spdx, files),
as --print-sql shows them (a run reads the same tables filtered to its sources, table_steps). batches:
(source, batch) pairs (tag_batches); when given, p reads only the data files of those batches and o, t hold
only the rows of their sources (every condition of the default filter and of the tags joins them on the row's
source). Duplicates have no table: dup_sql finds them among the rows read."""
rows = rows_from(_batch_files(root, batches) if batches else _data_files(root, sources))
keep = ""
if batches:
keep = f" WHERE source IN ({', '.join(sql_str(s) for s in sorted({s for s, _ in batches}))})"
out = [f"CREATE OR REPLACE VIEW p AS {rows}",
f"CREATE OR REPLACE VIEW b AS SELECT * FROM read_parquet({sql_str(root + '/meta/batches.parquet')})",
f"CREATE OR REPLACE VIEW o AS SELECT * FROM read_parquet({sql_str(root + '/meta/bench_overlap.parquet')}){keep}",
f"CREATE OR REPLACE VIEW t AS SELECT * FROM read_parquet({sql_str(root + '/meta/tags.parquet')}){keep}",
f"CREATE OR REPLACE VIEW c AS SELECT * FROM read_parquet({sql_str(root + '/meta/bench_checked.parquet')})",
f"CREATE OR REPLACE VIEW s AS SELECT source, domain, form, pii.level AS pii_level, license.spdx AS spdx, "
f"files FROM read_parquet({sql_str(root + '/' + CATALOG)})"]
return out
# ---------- reading only what the selection needs ----------
# A selection whose sources hold at most this many rows (by the catalog's files column) is copied into memory with
# one read of its data files; a larger one is read in place (twice: to pick the rows, then to copy the picked ones).
LOCAL_ROWS = 2_000_000
READ_JOBS = 8 # parallel reads of the tables (each is one or a few HTTP requests)
_SETUP: dict = {} # id(connection) -> the session settings every cursor of it repeats (connect)
class UnknownName(Exception):
"""A source, domain or form name that the catalog does not have (the message names the closest ones)."""
def catalog_table(con, root: str) -> dict:
"""meta/catalog.parquet read once into table s: source, domain (list of codes), form, pii_level, spdx, files
(NULL where this revision of the catalog has no such column). -> {column: present}."""
con.execute(f"CREATE OR REPLACE TABLE s_raw AS SELECT * FROM read_parquet({sql_str(root + '/' + CATALOG)})")
have = {str(r[0]): str(r[1]) for r in con.execute("DESCRIBE s_raw").fetchall()}
def col(expr, name, typ, ok):
return f"{expr} AS {name}" if ok else f"CAST(NULL AS {typ}) AS {name}"
cols = ["source", col("domain", "domain", "VARCHAR[]", "domain" in have), col("form", "form", "VARCHAR", "form" in have),
col("pii.level", "pii_level", "VARCHAR", "level" in have.get("pii", "")),
col("license.spdx", "spdx", "VARCHAR", "spdx" in have.get("license", "")),
col("files", "files", "BIGINT", "files" in have)]
con.execute(f"CREATE OR REPLACE TABLE s AS SELECT {', '.join(cols)} FROM s_raw")
con.execute("DROP TABLE s_raw")
return {k: k in have for k in ("domain", "form", "pii", "license", "files")}
def _closest(name: str, names) -> str:
import difflib
near = difflib.get_close_matches(name, sorted(set(names)), n=3, cutoff=0.6)
return ", ".join(near) if near else "none close"
def check_names(con, *, sources=(), domains=(), forms=(), has_form=True, where: str = "") -> None:
"""Every name given must be in table s: a source name, a domain code that a source carries (a top-level code
counts when one of its leaves is carried), a form. Raises UnknownName with one line naming the closest names."""
srcs = {str(r[0]) for r in con.execute("SELECT source FROM s").fetchall()}
for s in sources:
if s not in srcs:
raise UnknownName(f"--source {s}: no such source in {CATALOG}{where}; closest: {_closest(s, srcs)}")
if domains:
codes = {str(r[0]) for r in con.execute("SELECT DISTINCT unnest(domain) FROM s").fetchall() if r[0]}
codes |= {c.split(".")[0] for c in codes}
for d in domains:
if d not in codes:
raise UnknownName(f"--domain {d}: no source in {CATALOG}{where} has this domain; closest: "
f"{_closest(d, codes)}")
if forms and has_form:
fs = {str(r[0]) for r in con.execute("SELECT DISTINCT form FROM s").fetchall() if r[0]}
for f in forms:
if f not in fs:
raise UnknownName(f"--form {f}: no source in {CATALOG}{where} has this form; closest: {_closest(f, fs)}")
def resolve_sources(con, root: str, *, domains=(), forms=(), sources=()) -> list:
"""The sources of table s that match domains and forms (catalog_select_sql), limited to sources when given;
every source when none of the three is given. Sorted. For a local copy, sources without data files are left
out."""
if domains or forms:
sql = catalog_select_sql(domains, forms)
if sources:
sql += f" AND s.source IN ({', '.join(sql_str(s) for s in sources)})"
found = sorted(str(s) for (s,) in con.execute(sql).fetchall() if s is not None)
elif sources:
found = sorted(set(sources))
else:
found = sorted(str(s) for (s,) in con.execute("SELECT source FROM s").fetchall())
if not is_remote(root):
found = [s for s in found if any(Path(root, "data", s).glob("*/*.parquet"))]
return found
def table_steps(root: str, sources, *, batches=None, tags=(), everything: bool = False,
local_rows: bool = False) -> dict:
"""{table: statement} that read only what the selection needs, run in parallel (read_parallel): p0 the rows (a
table when local_rows, else a view; complete_rows then makes the view p over it), and of b, o, c (and t with
tags) only the rows of sources. batches:
(source, batch) pairs (tag_batches); when given, p reads only their data files. everything: every source is
selected, so nothing is filtered."""
names = sorted({s for s, _ in batches}) if batches else sorted(sources)
w = "" if everything else f" WHERE source IN ({', '.join(sql_str(s) for s in names) or 'NULL'})"
def meta(name):
return f"SELECT * FROM read_parquet({sql_str(f'{root}/meta/{name}.parquet')}){w}"
files = _batch_files(root, batches) if batches else _data_files(root, () if everything else names)
out = {"p": f"CREATE OR REPLACE {'TABLE' if local_rows else 'VIEW'} p0 AS {rows_from(files)}",
"b": f"CREATE OR REPLACE TABLE b AS {meta('batches')}",
"o": f"CREATE OR REPLACE TABLE o AS {meta('bench_overlap')}",
"c": f"CREATE OR REPLACE TABLE c AS {meta('bench_checked')}"}
if tags:
out["t"] = f"CREATE OR REPLACE TABLE t AS {meta('tags')}"
return out
def cursor(con):
"""A cursor of con with con's session settings (HTTP retries, proxy, token: connect)."""
cur = con.cursor()
for q in _SETUP.get(id(con), ()):
cur.execute(q)
return cur
# The optional row columns the conditions read, with their types: data files written before a column existed lack it,
# and p (complete_rows) gives it as NULL there, so a condition on it reads NULL instead of failing.
ROW_OPTIONAL = (("truncated", "VARCHAR"), ("license_spdx", "VARCHAR"), ("license_training_ok", "VARCHAR"),
("license_redistribution_ok", "VARCHAR"), ("license_notes", "VARCHAR"), ("sensitive", "VARCHAR"),
("member_path", "VARCHAR"), ("parent_pointer_id", "VARCHAR"), ("range_offset", "BIGINT"),
("range_length", "BIGINT"), ("media_type", "VARCHAR"), ("origin_url", "VARCHAR"),
("origin_time", "VARCHAR"), ("extra", "VARCHAR"), ("sha256", "BLOB"), ("sha1", "BLOB"),
("md5", "BLOB"), ("crc32", "BLOB"), ("zip_local_header_offset", "BIGINT"),
("zip_compression_method", "BIGINT"), ("zip_compressed_size", "BIGINT"))
def complete_rows(con) -> list:
"""View p over p0 (the rows read by table_steps) with every column of ROW_OPTIONAL that p0 lacks added as NULL.
-> the columns added."""
have = {str(r[0]) for r in con.execute("DESCRIBE p0").fetchall()}
add = [(c, t) for c, t in ROW_OPTIONAL if c not in have]
extra = "".join(f", CAST(NULL AS {t}) AS {c}" for c, t in add)
con.execute(f"CREATE OR REPLACE VIEW p AS SELECT *{extra} FROM p0")
return [c for c, _ in add]
def read_parallel(con, jobs: dict) -> dict:
"""Run jobs ({name: SQL statement, or a function of a cursor}) on cursors of con in parallel threads (each read
waits on the network); -> {name: the function's result or None}. The first failure is raised."""
import concurrent.futures as cf
def one(job):
cur = cursor(con)
try:
return job(cur) if callable(job) else cur.execute(job) and None
finally:
cur.close()
out = {}
with cf.ThreadPoolExecutor(max(1, min(READ_JOBS, len(jobs)))) as ex:
futs = {name: ex.submit(one, job) for name, job in jobs.items()}
for name, f in futs.items():
out[name] = f.result()
return out
def catalog_sources(con, root: str, domains=(), forms=(), sources=()) -> list:
"""The sources of meta/catalog.parquet that match domains and forms (catalog_select_sql; only the columns
needed are read), limited to sources when given, sorted. For a local copy, sources without data files are
left out. Raises IndexReadError when the catalog has no column that domains or forms need."""
path = sql_str(root + "/" + CATALOG)
have = {str(r[0]) for r in con.execute(f"DESCRIBE SELECT * FROM read_parquet({path})").fetchall()}
missing = [c for c in catalog_columns(domains, forms) if c not in have]
if missing:
raise IndexReadError(
f"{CATALOG} at {root} has no {'column' if len(missing) == 1 else 'columns'} {', '.join(missing)}: this "
f"revision of the index is older than the columns domain and form, so --domain and --form cannot be "
f"used with it; read a newer revision (a later --revision, or none for the current one)")
sql = f"WITH s AS ({catalog_view_sql(root, domains, forms)}) {catalog_select_sql(domains, forms)}"
if sources:
sql += f" AND s.source IN ({', '.join(sql_str(s) for s in sources)})"
found = sorted(str(s) for (s,) in con.execute(sql).fetchall() if s is not None)
if not is_remote(root):
found = [s for s in found if any(Path(root, "data", s).glob("*/*.parquet"))]
return found
def tag_batches(con, root: str, tags, sources=()) -> list:
"""The (source, batch) pairs that carry any of the tags (meta/tags.parquet, three columns read), limited to
sources when given. For a local copy, pairs without data files are left out."""
sql = (f"SELECT DISTINCT source, batch FROM read_parquet({sql_str(root + '/meta/tags.parquet')}) "
f"WHERE tag IN ({', '.join(sql_str(t) for t in tags)})")
if sources:
sql += f" AND source IN ({', '.join(sql_str(s) for s in sources)})"
pairs = [(str(s), str(b)) for s, b in con.execute(sql + " ORDER BY 1, 2").fetchall()]
if not is_remote(root):
pairs = [(s, b) for s, b in pairs if any(Path(root, "data", s, b).glob("*.parquet"))]
return pairs
def cand_steps(conds: list, profile: list, max_size: int | None = None, size_cap: int | None = None) -> list:
"""The first part of the selection: table fetch_cand, one line per row that passes conds (your own conditions)
with where it sits, its unit (unit_sql, NULL for a companion), its role, the unit's order key (unit_key_sql), its
caps, natural_key_conflict and fail, the 1-based number in CRITERIA of the first criterion of profile it fails
(NULL: it passes all); then fetch_units, one line per unit with the first criterion any of its rows fails.
size_cap (the profile's 20 MB) lowers the cap of a row whose batch cap is larger; max_size replaces both.
The duplicate criterion (in profile with no row condition) is judged last: fetch_cand0 holds the rows with the
other criteria and the columns dup_sql reads, and dup_sql runs over the rows whose unit (or, for a companion
file, the row itself) fails none of them, so the copy kept is one the reader gets; a row it removes fails the
duplicate criterion. natural_key_conflict is true only for a row whose natural key the duplicate criterion
removed from other rows."""
if max_size is not None:
cap = str(int(max_size))
elif size_cap is not None:
cap = f"least(b.max_size_bytes, {int(size_cap)})"
else:
cap = "b.max_size_bytes"
whole = str(int(max_size)) if max_size is not None else "b.max_size_bytes"
rank = {n: i + 1 for i, n in enumerate(CRITERIA)}
rows = [(n, c) for n, c in profile if c is not None]
dedup = len(rows) < len(profile)
fail = ("CASE " + " ".join(f"WHEN NOT coalesce({c}, false) THEN {rank[n]}" for n, c in rows) + " END"
if rows else "CAST(NULL AS INTEGER)")
base = ("row_file", "row_index", "source", "role", "unit", "unit_key", "fetch_key", "size_cap_bytes",
"batch_cap_bytes")
head = (f"SELECT p.row_file, p.row_index, p.source, {role_sql()} AS role, {unit_sql()} AS unit, "
f"{unit_key_sql()} AS unit_key, {fetch_order()} AS fetch_key, {cap} AS size_cap_bytes, "
f"{whole} AS batch_cap_bytes, {fail} AS fail")
if dedup:
head += ", " + ", ".join([f"p.{c}" for c in DUP_ROW_COLS if c not in base] + dup_inputs_sql())
else:
head += ", false AS natural_key_conflict"
cand = (f"CREATE OR REPLACE TEMP TABLE {'fetch_cand0' if dedup else 'fetch_cand'} AS {head} "
"FROM p JOIN b ON b.source = p.source AND b.batch = p.batch")
if conds:
cand += "\nWHERE " + "\n AND ".join(conds)
out = [cand]
if dedup:
keep = ("c.fail IS NULL AND NOT EXISTS (SELECT 1 FROM fetch_cand0 f WHERE f.fail IS NOT NULL "
"AND f.source = c.source AND f.unit = c.unit)")
cols = ", ".join(base)
out += [f"CREATE OR REPLACE TEMP TABLE fetch_cand AS SELECT {cols}, natural_key_conflict, "
f"CASE WHEN duplicate_reason IS NOT NULL THEN {rank['duplicate']} ELSE fail END AS fail "
f"FROM ({dup_sql(f'SELECT c.* FROM fetch_cand0 c WHERE {keep}')})\n"
f"UNION ALL SELECT {cols}, false, fail FROM fetch_cand0 c WHERE NOT ({keep})",
"DROP TABLE fetch_cand0"]
out.append("CREATE OR REPLACE TEMP TABLE fetch_units AS SELECT source, unit, min(unit_key) AS unit_key, "
"min(fail) AS fail, count(*) AS files FROM fetch_cand WHERE unit IS NOT NULL GROUP BY source, unit")
return out
def take_steps(limit: int | None = None, sample: int | None = None, every: bool = False) -> list:
"""The second part: fetch_take, the units kept (every row passes), at most sample per source and limit in all,
the first ones in unit_key order; fetch_pick, their rows and the companion files (that pass) of the sources
they come from; fetch_rows, those rows whole. Then the narrow tables are dropped. part_queries returns
fetch_rows in fetch order, one key range at a time (one query that both picks and sorts whole rows keeps every
row in memory, and DuckDB cannot sort wide rows larger than its memory limit). every (a dry run): fetch_pick
and fetch_rows hold every row of fetch_cand, with dry_fate (selected: it would be fetched; removed: its unit,
or the companion file itself, fails a criterion of the profile; not_taken: left out by sample or limit, or a
companion file of a source none of whose units is taken) and dry_fail (the criterion's number in CRITERIA)."""
inner = "SELECT source, unit, unit_key FROM fetch_units WHERE fail IS NULL"
if sample is not None:
inner = (f"SELECT source, unit, unit_key FROM (SELECT source, unit, unit_key, row_number() OVER "
f"(PARTITION BY source ORDER BY unit_key, unit) AS n FROM fetch_units WHERE fail IS NULL) "
f"WHERE n <= {int(sample)}")
take = f"CREATE OR REPLACE TEMP TABLE fetch_take AS {inner}"
if limit is not None:
take += f" ORDER BY unit_key, source, unit LIMIT {int(limit)}"
picked = ("k.unit IS NOT NULL OR (c.unit IS NULL AND c.fail IS NULL AND c.source IN "
"(SELECT source FROM fetch_take))")
if every:
pick = ("CREATE OR REPLACE TEMP TABLE fetch_pick AS SELECT c.row_file, c.row_index, "
"coalesce(k.unit_key, u.unit_key, c.fetch_key) AS fetch_key, c.size_cap_bytes, c.batch_cap_bytes, "
f"c.natural_key_conflict, c.role, c.unit, CASE WHEN {picked} THEN 'selected' "
"WHEN coalesce(u.fail, c.fail) IS NOT NULL THEN 'removed' ELSE 'not_taken' END AS dry_fate, "
"CASE WHEN c.unit IS NULL THEN c.fail ELSE u.fail END AS dry_fail "
"FROM fetch_cand c LEFT JOIN fetch_take k ON k.source = c.source AND k.unit = c.unit "
"LEFT JOIN fetch_units u ON u.source = c.source AND u.unit = c.unit")
rows = ("CREATE OR REPLACE TEMP TABLE fetch_rows AS SELECT p.*, k.fetch_key, k.size_cap_bytes, "
"k.batch_cap_bytes, k.natural_key_conflict, k.dry_fate, k.dry_fail FROM p JOIN fetch_pick k "
"ON k.row_file = p.row_file AND k.row_index = p.row_index")
return [take, pick, rows, "DROP TABLE fetch_pick"]
pick = ("CREATE OR REPLACE TEMP TABLE fetch_pick AS SELECT c.row_file, c.row_index, "
"coalesce(k.unit_key, c.fetch_key) AS fetch_key, c.size_cap_bytes, c.batch_cap_bytes, "
"c.natural_key_conflict, c.role, c.unit FROM fetch_cand c LEFT JOIN fetch_take k ON k.source = c.source "
f"AND k.unit = c.unit WHERE {picked}")
rows = ("CREATE OR REPLACE TEMP TABLE fetch_rows AS SELECT p.*, k.fetch_key, k.size_cap_bytes, k.batch_cap_bytes, "
"k.natural_key_conflict FROM p JOIN fetch_pick k ON k.row_file = p.row_file AND k.row_index = p.row_index")
return [take, pick, rows, "DROP TABLE fetch_pick"]
def select_steps(conds: list, limit: int | None = None, max_size: int | None = None) -> list:
"""The rows that pass conds with no profile and every row its own unit, as statements (cand_steps and
take_steps; kept for callers of earlier versions)."""
return cand_steps(conds, [], max_size) + take_steps(limit)
def part_query(lo: str = "", hi: str = "") -> str:
"""The rows of fetch_rows whose fetch_key lies in [lo, hi) (an empty bound is open), in fetch order."""
where = [f"p.fetch_key >= {sql_str(lo)}"] if lo else []
where += [f"p.fetch_key < {sql_str(hi)}"] if hi else []
return ("SELECT * EXCLUDE (fetch_key) FROM fetch_rows p" + ("\nWHERE " + " AND ".join(where) if where else "")
+ "\nORDER BY p.fetch_key, p.row_file, p.row_index")
def part_queries(con, memory_limit: str) -> list:
"""Queries that return fetch_rows in fetch order, split into key ranges so that each range holds at most
PART_SHARE of the memory limit (the fetch key is a hex SHA-256, so equal ranges of its first four digits hold
about equal numbers of rows). Sizes are the bytes of the text and binary values plus 8 for any other value."""
lens = []
for name, typ, *_ in con.execute("DESCRIBE fetch_rows").fetchall():
col = '"' + name.replace('"', '""') + '"'
lens.append(f"coalesce(strlen({col}), 0)" if typ == "VARCHAR"
else f"coalesce(octet_length({col}), 0)" if typ == "BLOB" else "8")
total = con.execute(f"SELECT coalesce(sum({' + '.join(lens)}), 0) FROM fetch_rows").fetchone()[0]
budget = max(1, int((memory_bytes(memory_limit) or MEMORY_CAP) * PART_SHARE))
n = max(1, min(1 << 16, -(-int(total) // budget)))
bounds = ["" if i in (0, n) else format(i * (1 << 16) // n, "04x") for i in range(n + 1)]
return [part_query(bounds[i], bounds[i + 1]) for i in range(n)]
def is_remote(root: str) -> bool:
return "://" in root
HF_DATASETS = "hf://datasets/"
REF_RE = re.compile(r"[A-Za-z0-9][A-Za-z0-9._-]{0,127}")
def repo_revision(repo: str, *, token: str | None = None, timeout: float = 30, ref: str = "main") -> str:
"""The commit a branch or tag of the dataset repo (ref, default main) points to now (huggingface_hub's repo_info,
field sha). The token (or huggingface_hub's own, HF_TOKEN first, when none is given) is sent when there is one."""
from huggingface_hub import HfApi
if not REF_RE.fullmatch(ref) or ".." in ref:
raise ValueError(f"not a branch or tag name: {ref[:60]!r}")
sha = str(HfApi().repo_info(repo, repo_type="dataset", revision=ref, timeout=timeout, token=token).sha or "")
if not re.fullmatch(r"[0-9a-f]{40}", sha):
raise ValueError(f"the Hub API gave no commit for {repo}")
return sha
def pin_root(root: str, *, revision=None, warn=None, ref_ok: bool = False) -> str:
"""hf://datasets/<owner>/<name>[/...] -> the same root at the current commit, hf://datasets/<owner>/<name>@<commit>
[/...] (DuckDB reads hf:// paths at a revision given after @), so every file of a long query comes from one
commit even when the repo gets new commits meanwhile. A root that already names a revision, and any other
root, is returned as it is. When the commit cannot be read the root is returned as it is (the main branch is
read) and warn gets one line saying why."""
root = root.rstrip("/")
if not root.startswith(HF_DATASETS):
return root
parts = root[len(HF_DATASETS):].split("/", 2)
if len(parts) < 2 or not all(parts[:2]) or "@" in parts[0] or "@" in parts[1]:
return root
repo = f"{parts[0]}/{parts[1]}"
try:
sha = str((revision or repo_revision)(repo) or "")
if not (re.fullmatch(r"[0-9a-f]{40}", sha) or (ref_ok and REF_RE.fullmatch(sha) and ".." not in sha)):
raise ValueError(f"not a commit id: {sha[:60]!r}")
except Exception as e: # noqa: BLE001 any failure falls back to main
(warn or _stderr)(f"could not read the current commit of {repo} ({type(e).__name__}: {e}); reading the "
f"main branch, which can change while the query runs")
return root
return f"{HF_DATASETS}{repo}@{sha}" + (f"/{parts[2]}" if len(parts) > 2 else "")
def _stderr(msg: str) -> None:
print(f"warning: {msg}", file=sys.stderr)
DUCKDB_MAX_TEMP = "100GB"
def max_temp_size() -> str:
return os.environ.get("DUCKDB_MAX_TEMP") or DUCKDB_MAX_TEMP
def _cgroup_limit() -> int | None:
"""The memory limit of this process's cgroup (v2 memory.max, else v1 memory.limit_in_bytes), when one is set."""
for p in ("/sys/fs/cgroup/memory.max", "/sys/fs/cgroup/memory/memory.limit_in_bytes"):
try:
v = Path(p).read_text().strip()
except OSError:
continue
if v.isdigit() and int(v) < 1 << 60:
return int(v)
return None
def default_memory_limit() -> str:
"""The DuckDB memory limit used when --memory-limit is not given: the smaller of MEMORY_CAP and a quarter of the
memory this process may use (physical memory, or the cgroup limit when lower; MEMORY_CAP when neither can be
read). DuckDB's own default is 80% of physical memory; a selection over a large local copy (a sort over every
data file) then grows towards that instead of spilling to the temporary directory."""
try:
total = os.sysconf("SC_PAGE_SIZE") * os.sysconf("SC_PHYS_PAGES")
except (AttributeError, ValueError, OSError):
total = 0
cg = _cgroup_limit()
if cg is not None:
total = min(total, cg) if total > 0 else cg
limit = min(MEMORY_CAP, total // 4) if total > 0 else MEMORY_CAP
return f"{max(limit >> 20, 256)}MiB"
def memory_bytes(limit: str):
"""A memory size such as 4GB, 512MiB or 8 GiB in bytes (GB = 1000^3, GiB = 1024^3, as DuckDB reads them);
None for anything else."""
m = re.fullmatch(r"\s*(\d+(?:\.\d+)?)\s*(?:([KMGT])(i?)B?)?\s*B?\s*", str(limit or ""), re.I)
if not m:
return None
unit = (1024 if m.group(3) else 1000) ** " KMGT".index((m.group(2) or " ").upper())
return int(float(m.group(1)) * unit)
def default_threads(memory_limit: str):
"""DuckDB threads for a memory limit: one per THREAD_MEMORY of it, at least 1, at most the CPU count (None when
the limit cannot be read: DuckDB's own default then)."""
n = memory_bytes(memory_limit)
return None if n is None else max(1, min(os.cpu_count() or 1, n // THREAD_MEMORY))
def http_settings(con, threads: int = REMOTE_THREADS) -> None:
"""Retries, backoff and timeout for network reads (HTTP_SETTINGS), and fewer threads. A setting this DuckDB
does not know is skipped with a note on stderr."""
for key, value in [*HTTP_SETTINGS.items(), ("threads", threads)]:
try:
con.execute(f"SET {key} = {int(value)}")
except Exception as e: # noqa: BLE001 (an older DuckDB, or the httpfs extension could not be loaded)
print(f"note: could not set {key}: {type(e).__name__}: {str(e).splitlines()[0][:200]}", file=sys.stderr)
def duckdb_proxy_sql(proxy) -> list:
"""The DuckDB settings that send its http(s):// and hf:// reads through proxy (an http:// proxy, with its user
name and password). DuckDB has no SOCKS support: a socks proxy raises ValueError."""
if not proxy:
return []
u = urllib.parse.urlsplit(proxy)
if u.scheme.lower().startswith("socks"):
raise ValueError(f"DuckDB cannot read through a SOCKS proxy ({redact_proxy(proxy)}): the table reads would "
f"go out directly. Use an http:// proxy, or download the tables first and pass the copy "
f"with --data")
if u.scheme.lower() not in ("http", "https") or not u.hostname:
raise ValueError(f"not a proxy address: {redact_proxy(proxy)}")
hp = u.hostname + (f":{u.port}" if u.port else "")
out = [f"SET http_proxy = {sql_str(hp)}"]
if u.username:
out.append(f"SET http_proxy_username = {sql_str(urllib.parse.unquote(u.username))}")
if u.password:
out.append(f"SET http_proxy_password = {sql_str(urllib.parse.unquote(u.password))}")
return out
def connect(memory_limit: str | None = None, temp_dir: str | None = None, settings: dict | None = None, *,
remote: bool = False, token: str | None = None, proxy: str | None = None):
"""A DuckDB connection. remote: the tables are read over the network (see HTTP_SETTINGS). token: the Hugging
Face token to read with; without one the HF_TOKEN environment variable is used when set."""
try:
import duckdb
except ImportError:
sys.exit("fetch.py needs the duckdb package: pip install duckdb")
con = duckdb.connect()
merged = {"max_temp_directory_size": max_temp_size(), **(settings or {})}
for key, value in merged.items():
con.execute(f"SET {key} = {sql_str(value)}")
if memory_limit:
con.execute(f"SET memory_limit = {sql_str(memory_limit)}")
if temp_dir:
con.execute(f"SET temp_directory = {sql_str(temp_dir)}")
setup = []
if remote:
http_settings(con)
for key, value in HTTP_SETTINGS.items():
setup.append(f"SET {key} = {int(value)}")
for q in duckdb_proxy_sql(proxy):
con.execute(q)
setup.append(q)
token = token or os.environ.get("HF_TOKEN")
if token:
try:
con.execute(f"CREATE SECRET hf_token (TYPE huggingface, TOKEN {sql_str(token)})")
except Exception as e: # noqa: BLE001 (keep the token out of the message)
raise RuntimeError(f"could not register the Hugging Face token: {type(e).__name__}: "
f"{str(e).replace(token, '***')}") from None
_SETUP[id(con)] = [q for q in setup if _settable(con, q)]
return con
def _settable(con, q: str) -> bool:
"""False for a setting this DuckDB does not know (http_settings already said so), so cursors skip it."""
try:
con.cursor().execute(q).close()
except Exception: # noqa: BLE001
return False
return True
def load_specs(con, root: str) -> dict:
text = con.execute(f"SELECT content FROM read_text({sql_str(root + '/meta/sources.json')})").fetchone()[0]
return {s["source"]: s["layout"] for s in json.loads(text)["sources"]}
# ---------- one table row -> the full pointer ----------
def derive_pid(rule, source, collection, uri, offset):
if not rule or not isinstance(source, str) or not isinstance(collection, str) or not isinstance(uri, str):
return None
tail = "/".join(uri.split("/")[-int(rule["segments"]):])
if rule.get("at_offset"):
if not (isinstance(offset, int) and not isinstance(offset, bool)):
return None
tail += f"@{offset}"
return f"{source}:{collection}:{tail}"
def member_pid(source, collection, parent, member):
if not all(isinstance(v, str) for v in (source, collection, parent, member)) or parent.count(":") < 2:
return None
return f"{source}:{collection}:{parent.split(':', 2)[2]}!/{member}"
def derive_alts(rule, uri):
if not rule or not isinstance(uri, str):
return None
out = []
for f, t, suf in rule["pairs"]:
if not uri.startswith(f):
return None
out.append(t + uri[len(f):] + suf)
return out
def derive_hash(seg, uri):
if not isinstance(uri, str):
return None
parts = uri.split("/")
k, j = seg
if k > len(parts):
return None
return "".join(parts[-k:len(parts) - j])
def unswap(rule, stored):
f, t, suf = rule["pairs"][0]
if not isinstance(stored, str) or not stored.startswith(t) or not stored.endswith(suf) \
or len(stored) < len(t) + len(suf):
return None
return f + stored[len(t):len(stored) - len(suf)]
def _hex(v):
return v.hex() if isinstance(v, (bytes, bytearray)) else v
def restore(col: dict, spec: dict) -> dict:
"""One table row (column name -> value) and the source's layout from meta/sources.json -> the full pointer."""
x = json.loads(col["extra"]) if col.get("extra") else {}
if "_row" in x:
return x["_row"]
r = copy.deepcopy(spec["constants"])
r["source"] = col["source"]
for k in ("collection", "ext", "size_bytes"):
r[k] = col.get(k)
arule = spec.get("alt_uris")
uri = col["uri"]
if arule and arule["swap"] and not x.get("_uri_orig"):
r["uri"] = unswap(arule, uri)
r["alt_uris"] = derive_alts(arule, r["uri"])
else:
r["uri"] = uri
if arule and not x.get("_uri_orig"):
a = derive_alts(arule, uri)
if a is not None:
r["alt_uris"] = a
r["hashes"] = {n: _hex(col[n]) for n, _ in HASH_COLS if col.get(n) is not None}
for h, seg in (spec.get("hash_from_uri") or {}).items():
v = derive_hash(seg, r["uri"])
if v is not None:
r["hashes"][h] = v
for h in x.pop("_hx", []):
r["hashes"].pop(h, None)
r["hashes"].update(x.pop("hashes", {}))
for k in ("media_type", "member_path", "parent_pointer_id"):
if col.get(k) is not None:
r[k] = col[k]
if col.get("zip_local_header_offset") is not None:
r["zip_entry"] = {k: col.get(c) for k, c in ZIP_COLS}
if col.get("range_offset") is not None:
r["range"] = {"offset": col["range_offset"], "length": col.get("range_length")}
if col.get("origin_url") is not None:
r["origin"] = {"url": col["origin_url"]}
if col.get("origin_time") is not None:
r["origin"]["captured_at"] = col["origin_time"]
lo = {k: col[c] for c, k in LICENSE_COLS if col.get(c) is not None}
if lo:
r["license_override"] = lo
if col.get("sensitive") is not None:
r["sensitive"] = col["sensitive"]
if "pointer_id" in x:
pid = x.pop("pointer_id")
elif "pid" in x:
pid = f"{r['source']}:{r['collection']}:{x.pop('pid')}"
elif col.get("parent_pointer_id") is not None and col.get("member_path") is not None:
pid = member_pid(r["source"], r["collection"], col["parent_pointer_id"], col["member_path"])
else:
pid = derive_pid(spec.get("pointer_id"), r["source"], r["collection"], r["uri"], col.get("range_offset"))
r["pointer_id"] = pid
absent = x.pop("_absent", [])
x.pop("_uri_orig", None)
r.update(x)
if col.get("truncated") is not None:
sm = dict(r.get("source_meta") or {})
sm[TRUNC_KEY] = col["truncated"]
r["source_meta"] = sm
for k in absent:
r.pop(k, None)
return r
# ---------- download and verify ----------
class Unsupported(Exception):
pass
def to_http(uri: str):
if uri.startswith(("https://", "http://")):
return uri
if uri.startswith("s3://"):
bucket, _, key = uri[5:].partition("/")
return f"https://s3.amazonaws.com/{bucket}/{urllib.parse.quote(key)}"
if uri.startswith("hf://datasets/"):
from huggingface_hub import hf_hub_url, parse_hf_uri
u = parse_hf_uri(uri) # a string parser, no request to the Hub
return hf_hub_url(u.id, u.path_in_repo, repo_type=u.type, revision=u.revision)
return None
def candidates(row: dict) -> list:
out = []
for u in [row.get("uri"), *(row.get("alt_uris") or [])]:
h = to_http(u) if isinstance(u, str) else None
if h and h not in out:
out.append(h)
first = to_http(row["uri"]) if isinstance(row.get("uri"), str) else None
if str(row.get("uri")).startswith("s3://") and first in out and len(out) > 1:
out.remove(first)
out.append(first)
return out
class UnsafePath(ValueError):
"""A row whose file would be written outside --out (or through a symbolic link); nothing is written for it."""
def _safe_parts(value, what: str) -> list:
"""One path value of a row (pointer_id tail, source or collection) as safe path parts: backslashes count as
separators, empty and . parts are dropped, a .. part or a NUL character refuses the row."""
s = str(value)
if "\0" in s:
raise UnsafePath(f"unsafe {what}: contains a NUL character")
parts = [p for p in s.replace("\\", "/").split("/") if p not in ("", ".")]
if not parts or ".." in parts or any(re.fullmatch(r"[A-Za-z]:", p) for p in parts[:1]):
raise UnsafePath(f"unsafe {what}: {s[:200]!r}")
return parts
def dest_path(root: Path, row: dict) -> Path:
"""Where the row's file is written: <root>/<the row's _dest_parts> when the run planned its place in the layout
(layout_parts), else <root>/<source>/<collection>/<pointer_id tail>. Every segment is cleaned the same way
(_safe_parts) and the resolved path must lie inside root; a path that leaves root (also through a symbolic link
already on disk) raises UnsafePath."""
if row.get("_dest_parts"):
parts = [x for p in row["_dest_parts"] for x in _safe_parts(p, "path part")]
return _inside(root, parts)
pid = row.get("pointer_id")
if isinstance(pid, str) and pid.count(":") >= 2:
rel = pid.split(":", 2)[2]
else:
rel = _pid_fallback(row)
parts = (_safe_parts(row.get("source"), "source") + _safe_parts(row.get("collection"), "collection")
+ _safe_parts(rel, "relative path"))
return _inside(root, parts)
def _pid_fallback(row: dict) -> str:
key = "\0".join(str(row.get(k)) for k in ("source", "uri", "range", "member_path"))
return hashlib.sha256(key.encode("utf-8")).hexdigest()[:24]
def _inside(root: Path, parts: list) -> Path:
dest = Path(root, *parts)
top = Path(root).resolve()
want = top.joinpath(*parts)
real = want.resolve()
if top not in real.parents:
raise UnsafePath(f"unsafe path: {dest} is outside {root}")
if real != want:
raise UnsafePath(f"unsafe path: {dest} goes through a symbolic link")
return dest
class Hasher:
def __init__(self, size):
self.h = {n: hashlib.new(n) for n in ("md5", "sha1", "sha256", "sha512")}
self.git = hashlib.sha1(f"blob {size}\0".encode()) if size is not None else None
self.crc = 0
self.n = 0
def update(self, b: bytes) -> None:
for h in self.h.values():
h.update(b)
if self.git is not None:
self.git.update(b)
self.crc = zlib.crc32(b, self.crc)
self.n += len(b)
def digests(self) -> dict:
out = {n: h.hexdigest() for n, h in self.h.items()}
out["git_blob_sha1"] = self.git.hexdigest() if self.git else ""
out["crc32"] = f"{self.crc & 0xFFFFFFFF:08x}"
return out
def _etag_md5(etag):
if not etag:
return None
e = str(etag).strip().strip('"').replace(""", "")
return e if len(e) == 32 and all(c in "0123456789abcdef" for c in e) else None
CHECKED_HASHES = ("crc32", "md5", "sha1", "sha256", "sha512", "git_blob_sha1")
# hash names that describe something other than the bytes written (or carry no value to compare)
NOT_CONTENT_HASHES = frozenset({"etag", "hash_source", "algorithm", "scope"})
def _want_hash(name: str, value) -> str:
if name == "crc32" and isinstance(value, int):
return f"{value & 0xFFFFFFFF:08x}"
v = str(value or "").strip().lower()
return v.zfill(8) if name == "crc32" and v and len(v) < 8 else v
def check_hashes(hashes: dict, got: dict, names=CHECKED_HASHES):
"""Compare every hash the row publishes with the computed digests: crc32, md5, sha1, sha256, sha512,
git_blob_sha1 and a single-part etag (an md5). -> (reason or None, number checked)."""
checked = 0
for name in names:
want = _want_hash(name, (hashes or {}).get(name))
if want:
checked += 1
if not got.get(name) or got[name] != want:
return f"{name} differs: expected {want}, got {got.get(name) or '(not computable)'}", checked
et = _etag_md5((hashes or {}).get("etag"))
if et:
checked += 1
if got["md5"] != et:
return f"etag (single-part md5) differs: expected {et}, got {got['md5']}", checked
return None, checked
def unchecked_hashes(row: dict) -> list:
"""The names of hashes the row publishes that this tool cannot compute (recorded in the manifest)."""
return sorted(k for k, v in (row.get("hashes") or {}).items()
if v and k not in CHECKED_HASHES and k not in NOT_CONTENT_HASHES)
def verify(row: dict, size: int, got: dict, names=CHECKED_HASHES):
"""None when the size and every published hash match, otherwise the reason."""
if row.get("size_bytes") is not None and size != row["size_bytes"]:
return f"size differs: expected {row['size_bytes']}, got {size}"
hashes = row.get("hashes") or {}
if not hashes and row.get("hash_source") == "computed_on_fetch":
return None
why, checked = check_hashes(hashes, got, names)
if why:
return why
return None if checked else "no hash that can be checked"
def is_rolling(row: dict) -> bool:
"""True for a file the source regenerates in place (ROLLING_FILES, or source_meta.rolling on the row)."""
sm = row.get("source_meta") if isinstance(row.get("source_meta"), dict) else {}
return bool(sm.get("rolling")) or (row.get("source"), row.get("collection")) in ROLLING_FILES
def no_hash_fields(row: dict, res: dict, sha256: str, note: str) -> dict:
"""The manifest fields of a row without hashes: unverified, the computed sha256, and checked "size only"
when its size was checked."""
if row.get("hashes"):
return res
res["unverified"] = note
res["sha256"] = sha256
if row.get("size_bytes") is not None:
res["checked"] = SIZE_ONLY
return res
def range_header(rng) -> str:
"""rng is (offset, length); offset None asks for the last length bytes."""
if rng[0] is None:
return f"bytes=-{rng[1]}"
return f"bytes={rng[0]}-{rng[0] + rng[1] - 1}"
SECRET_HEADERS = re.compile(r"^(authorization|x-amz-.*)$", re.I)
class SafeRedirect(urllib.request.HTTPRedirectHandler):
"""Follow redirects, but a redirect to another host or port (or from https to http) drops Authorization and
every x-amz-* header: a signed request must not hand its signature or session token to a third host."""
def redirect_request(self, req, fp, code, msg, headers, newurl):
new = super().redirect_request(req, fp, code, msg, headers, newurl)
if new is None:
return None
a, b = urllib.parse.urlsplit(req.full_url), urllib.parse.urlsplit(new.full_url)
if (a.hostname or "").lower() != (b.hostname or "").lower() or a.port != b.port \
or (a.scheme == "https" and b.scheme != "https"):
for store in (new.headers, new.unredirected_hdrs):
for k in [k for k in store if SECRET_HEADERS.match(k)]:
del store[k]
return new
PROXY_SCHEMES = ("http", "https", "socks5", "socks5h", "socks4", "socks4a")
def redact_proxy(proxy: str) -> str:
"""A proxy address without its user name and password (for messages)."""
u = urllib.parse.urlsplit(proxy or "")
if not u.hostname:
return str(proxy)
return u._replace(netloc=u.hostname + (f":{u.port}" if u.port else "")).geturl()
def env_proxy(env=None):
"""The proxy named by the environment: HTTPS_PROXY, then HTTP_PROXY, then ALL_PROXY (either case)."""
env = os.environ if env is None else env
for k in ("HTTPS_PROXY", "https_proxy", "HTTP_PROXY", "http_proxy", "ALL_PROXY", "all_proxy"):
if env.get(k):
return env[k]
return None
def _socks_handlers(proxy: str) -> list:
"""urllib handlers that connect through a SOCKS proxy (socks5h:// and socks4a:// let the proxy resolve host
names). Needs the optional PySocks package; the standard library has no SOCKS client."""
try:
import socks # PySocks, optional
except ImportError:
raise SystemExit(f"error: {redact_proxy(proxy)} is a SOCKS proxy and Python's standard library cannot use "
"SOCKS. Install the optional PySocks package (pip install pysocks), or use an HTTP proxy "
"(http://host:port).") from None
import ssl
u = urllib.parse.urlsplit(proxy)
scheme = u.scheme.lower()
kind = socks.SOCKS5 if scheme.startswith("socks5") else socks.SOCKS4
rdns = scheme in ("socks5h", "socks4a")
user = urllib.parse.unquote(u.username) if u.username else None
pw = urllib.parse.unquote(u.password) if u.password else None
def connect(host, port, timeout):
return socks.create_connection((host, port), timeout=timeout, proxy_type=kind, proxy_addr=u.hostname,
proxy_port=u.port or 1080, proxy_rdns=rdns, proxy_username=user,
proxy_password=pw)
class Conn(http.client.HTTPConnection):
def connect(self):
self.sock = connect(self.host, self.port, self.timeout)
class SConn(http.client.HTTPSConnection):
def connect(self):
self.sock = self._context.wrap_socket(connect(self.host, self.port, self.timeout),
server_hostname=self.host)
class H(urllib.request.HTTPHandler):
def http_open(self, req):
return self.do_open(Conn, req)
class HS(urllib.request.HTTPSHandler):
def https_open(self, req):
return self.do_open(SConn, req, context=ssl.create_default_context())
return [H(), HS()]
def make_url_opener(proxy=None):
"""The urllib opener every download uses: SafeRedirect, plus proxy (an http://, https://, socks5://,
socks5h://, socks4:// or socks4a:// address) when given. proxy None means a direct connection."""
handlers = [SafeRedirect()]
if proxy:
scheme = urllib.parse.urlsplit(proxy).scheme.lower()
if scheme not in PROXY_SCHEMES:
raise SystemExit(f"error: unsupported proxy {redact_proxy(proxy)}; use one of "
+ ", ".join(s + "://" for s in PROXY_SCHEMES))
if scheme.startswith("socks"):
handlers += [urllib.request.ProxyHandler({})] + _socks_handlers(proxy)
else:
handlers.append(urllib.request.ProxyHandler({"http": proxy, "https": proxy}))
else:
handlers.append(urllib.request.ProxyHandler({}))
return urllib.request.build_opener(*handlers)
_NET = {"opener": None, "ua": None, "proxy": None}
def user_agent(contact=None) -> str:
"""The User-Agent sent: UA, or with --contact the same product name and the caller's own contact."""
return f"{UA} (contact: {contact})" if contact else UA
def set_network(proxy=None, contact=None) -> None:
"""Configure the proxy and the User-Agent (with the --contact address) that open_url uses."""
_NET.update(opener=make_url_opener(proxy), ua=user_agent(contact), proxy=proxy)
def open_url(url: str, timeout: float, rng=None, headers=None):
"""rng is (offset, length), offset None for the last length bytes. HTTP gets a Range header and must answer
206. headers are extra request headers (the signed headers of a requester-pays request). Only http(s)
addresses are opened; a local --data copy is read through local_file_opener, never through an address."""
if not url.startswith(("https://", "http://")):
raise Unsupported(f"only http(s) addresses are fetched, not {url.split(':', 1)[0][:20]}://")
if _NET["opener"] is None:
set_network(env_proxy())
headers = {"User-Agent": _NET["ua"] or UA, **(headers or {})}
if rng:
headers["Range"] = range_header(rng)
r = _NET["opener"].open(urllib.request.Request(url, headers=headers), timeout=timeout) # noqa: S310
if rng and getattr(r, "status", 206) != 206:
r.close()
raise Unsupported(f"the server ignored the Range request (HTTP {getattr(r, 'status', '?')})")
return r
def local_file_opener(path):
"""An opener for one file of the local --data copy (a repository file a campaign row names). It ignores the
address and reads only that file; index rows cannot name local files, only resolve_repo_uri sets this up."""
def op(url, timeout, rng=None, headers=None):
f = open(path, "rb")
if not rng:
return f
with f:
if rng[0] is None:
f.seek(0, 2)
f.seek(max(0, f.tell() - rng[1]))
else:
f.seek(rng[0])
return io.BytesIO(f.read(rng[1]))
return op
def transient(e: BaseException) -> bool:
if isinstance(e, urllib.error.HTTPError):
return 500 <= e.code < 600
if isinstance(e, urllib.error.URLError):
r = e.reason
return isinstance(r, (ConnectionError, TimeoutError, socket.timeout)) or (
isinstance(r, str) and "timed out" in r)
return isinstance(e, (ConnectionError, TimeoutError, socket.timeout, http.client.IncompleteRead))
def _write(dest: Path, data: bytes) -> None:
part = dest.with_name(dest.name + ".part")
part.write_bytes(data)
os.replace(part, dest)
def _rng(row: dict):
r = row.get("range")
return (r["offset"], r["length"]) if isinstance(r, dict) and r.get("offset") is not None else None
class TooLarge(Exception):
"""The item is larger than the row's cap; nothing is kept."""
def cap_of(row: dict) -> int:
"""The most bytes written for one row: its cap from the query (size_cap_bytes)."""
v = row.get("_size_cap")
return int(v) if v is not None else UNKNOWN_SIZE_CAP
def whole_cap_of(row: dict) -> int:
"""The most bytes downloaded or decoded on the way to one row (a whole package, a solid 7z block, a
compressed member): the larger of the row's cap and its batch cap."""
vals = [int(v) for v in (row.get("_size_cap"), row.get("_batch_cap")) if v is not None]
return max(vals) if vals else UNKNOWN_SIZE_CAP
def marked_rolling(row: dict) -> bool:
"""True for a row that says itself it is rolling (source_meta.rolling), whole file, with hashes: a size or hash
that differs from the row is recorded, not a failure."""
sm = row.get("source_meta") if isinstance(row.get("source_meta"), dict) else {}
return bool(sm.get("rolling")) and bool(row.get("hashes")) and _rng(row) is None
def fetch_file(row, dest, url, timeout, opener):
want = row.get("size_bytes")
rolling = want is not None and not row.get("hashes") and _rng(row) is None and is_rolling(row)
loose = marked_rolling(row)
limit = (max(want, cap_of(row)) if want is not None else cap_of(row)) if rolling or loose \
else want if want is not None else cap_of(row)
h = Hasher(want)
part = dest.with_name(dest.name + ".part")
# a whole file of known size resumes from the .part an interrupted download left (Range: bytes=n-); a server
# that answers 200 instead of 206 sends the whole file, which then starts over
resumable = _rng(row) is None and want is not None and not rolling and not loose
have = part.stat().st_size if resumable and part.is_file() and not part.is_symlink() else 0
if not 0 < have < (want or 0):
have = 0
try:
if have:
src = opener(url, timeout, None, headers={"Range": f"bytes={have}-"})
status = getattr(src, "status", None) or getattr(src, "code", None) or 200
crange = str((getattr(src, "headers", None) or {}).get("Content-Range") or "")
if status == 206 and not crange.startswith(f"bytes {have}-"):
src.close()
raise Unsupported(f"the server answered the resume request with Content-Range {crange[:80]!r}")
if status == 206:
with open(part, "rb") as old:
for b in iter(lambda: old.read(CHUNK), b""):
h.update(b)
mode = "ab"
else:
mode = "wb"
else:
src, mode = opener(url, timeout, _rng(row)), "wb"
with src, open(part, mode) as out:
while True:
b = src.read(CHUNK)
if not b:
break
h.update(b)
out.write(b)
if h.n > limit:
break
except BaseException as e:
if not (resumable and transient(e) and part.is_file()):
part.unlink(missing_ok=True)
raise
if (want is None or rolling or loose) and h.n > limit:
part.unlink(missing_ok=True)
raise TooLarge(f"rolling file: grew past the cap of {limit} bytes" if rolling or loose
else f"unknown size: stopped after more than the cap of {limit} bytes")
changed = rolling and h.n != want
got = h.digests()
why = verify({**row, "size_bytes": None} if changed else row, h.n, got)
if loose:
os.replace(part, dest)
res = {"status": "ok", "path": str(dest), "bytes": h.n, "url": url, "sha256": got["sha256"],
"retrieved": utc_today()}
if why:
res.update(differs_from_index=True, expected_bytes=want,
expected_sha256=(row.get("hashes") or {}).get("sha256"), reason=why)
return res
if why:
part.unlink(missing_ok=True)
return {"status": "failed", "reason": why, "url": url, "got_bytes": h.n, "got_sha256": got["sha256"]}
os.replace(part, dest)
res = no_hash_fields(row, {"status": "ok", "path": str(dest), "bytes": h.n, "url": url, "sha256": got["sha256"],
**({"resumed_from": have} if have and mode == "ab" else {})},
h.digests()["sha256"], "the source publishes no hash; sha256 computed on download")
if changed:
res["checked"] = ROLLING_CHANGED
res["expected_bytes"] = want
return res
# WARC / ARC records
def _split_head(block: bytes) -> tuple:
a, b = block.find(b"\r\n\r\n"), block.find(b"\n\n")
if a < 0 and b < 0:
return block, b""
if b < 0 or (0 <= a < b):
return block[:a], block[a + 4:]
return block[:b], block[b + 2:]
def _headers(text: bytes) -> dict:
out = {}
for line in text.decode("latin-1").splitlines()[1:]:
k, sep, v = line.partition(":")
if sep:
out[k.strip().lower()] = v.strip()
return out
def gunzip_bounded(raw: bytes, limit: int) -> bytes:
"""Decompress gzip data (one or more members) without ever holding more than limit + 1 output bytes; more
output than limit raises TooLarge (a small compressed input can expand without bound)."""
out, n, rest = [], 0, raw
while rest:
d = zlib.decompressobj(16 + zlib.MAX_WBITS)
piece = d.decompress(rest, limit + 1 - n)
n += len(piece)
if n > limit or d.unconsumed_tail:
raise TooLarge(f"the data decompresses to more than the cap of {limit} bytes")
out.append(piece)
if not d.eof:
raise ValueError("the gzip data is incomplete")
rest = d.unused_data
return b"".join(out)
def read_bounded(src, limit: int, what: str) -> bytes:
"""Read a whole response, at most limit bytes; a longer one raises TooLarge."""
raw = src.read(limit + 1)
if len(raw) > limit:
raise TooLarge(f"{what} is larger than the cap of {limit} bytes")
return raw
def parse_record(raw: bytes, limit: int | None = None) -> dict:
data = gunzip_bounded(raw, UNKNOWN_SIZE_CAP if limit is None else limit)
if data.startswith(b"WARC/"):
head, _, rest = data.partition(b"\r\n\r\n")
wh = _headers(head)
block = rest[:int(wh.get("content-length", len(rest)))]
else:
first, _, rest = data.partition(b"\n")
block = rest[:int(first.split()[-1])]
http_head, payload = _split_head(block) if block.startswith(b"HTTP/") else (b"", block)
return {"http_headers": _headers(http_head) if http_head else {}, "payload": payload}
def dechunk(body: bytes) -> bytes:
out, pos = bytearray(), 0
while pos < len(body):
eol = body.find(b"\r\n", pos)
if eol < 0:
break
n = int(body[pos:eol].split(b";")[0].strip() or b"0", 16)
if n == 0:
break
out += body[eol + 2:eol + 2 + n]
pos = eol + 2 + n + 2
return bytes(out)
def payload_variants(rec: dict) -> list:
body = rec["payload"]
if "chunked" in rec["http_headers"].get("transfer-encoding", "").lower():
return [("dechunked_payload", dechunk(body)), ("payload", body)]
return [("payload", body)]
def verify_payload(row: dict, data: bytes):
want = row.get("payload_size_bytes")
if want is not None and len(data) != want:
return f"payload size differs: expected {want}, got {len(data)}"
h = Hasher(len(data))
h.update(data)
why, checked = check_hashes(row.get("hashes") or {}, h.digests())
return why if why or checked else "no hash that can be checked"
def fetch_payload(row, dest, url, timeout, opener):
if _rng(row) is None or row.get("size_bytes") is None:
raise Unsupported("a WARC record row needs a byte range and a size")
with opener(url, timeout, _rng(row)) as src:
raw = src.read(row["size_bytes"] + 1)
if len(raw) != row["size_bytes"]:
return {"status": "failed", "url": url, "reason": f"size differs: expected {row['size_bytes']}, got {len(raw)}"}
try:
rec = parse_record(raw, whole_cap_of(row))
except TooLarge:
raise
except Exception as e: # noqa: BLE001 (a cut or misplaced record)
return {"status": "failed", "url": url, "reason": f"cannot parse the record: {type(e).__name__}: {e}"}
whys = []
for label, data in payload_variants(rec):
why = verify_payload(row, data)
if why is None:
_write(dest, data)
return {"status": "ok", "path": str(dest), "bytes": len(data), "matched_on": label, "url": url}
whys.append(f"{label}: {why}")
return {"status": "failed", "url": url, "reason": "; ".join(whys)}
# API responses
def extract_field(doc, path: str):
cur = doc
for part in path.split("."):
if isinstance(cur, list) and part.isdigit():
cur = cur[int(part)] if int(part) < len(cur) else None
elif isinstance(cur, dict):
cur = cur.get(part)
else:
return None
if cur is None:
return None
return cur
def fetch_api_body(row, dest, url, timeout, opener):
limit = whole_cap_of(row)
with opener(url, timeout, None) as src:
raw = read_bounded(src, limit, "the API response")
if raw[:2] == b"\x1f\x8b":
try:
raw = gunzip_bounded(raw, limit)
except (zlib.error, ValueError) as e:
return {"status": "failed", "url": url, "reason": f"cannot decompress the API response: {e}"}
try:
doc = json.loads(raw.decode("utf-8"))
except (UnicodeDecodeError, ValueError) as e:
return {"status": "failed", "url": url, "reason": f"the API response is not JSON: {e}"}
path = (row.get("source_meta") or {}).get("api_body_field") or API_BODY_DEFAULT_FIELD
v = extract_field(doc, path)
body = ("" if v is None else v if isinstance(v, str) else json.dumps(v, ensure_ascii=False)).encode("utf-8")
h = Hasher(len(body))
h.update(body)
why = verify(row, len(body), h.digests())
if why:
return {"status": "failed", "url": url, "reason": f"{path}: {why}"}
_write(dest, body)
return no_hash_fields(row, {"status": "ok", "path": str(dest), "bytes": len(body),
"matched_on": f"api_body:{path}", "url": url},
h.digests()["sha256"], "the source publishes no hash; sha256 computed on download")
# zip members
def _get_range(url, timeout, start, length, opener):
with opener(url, timeout, (start, length)) as r:
data = r.read(length + 1)
if len(data) != length:
raise Unsupported(f"range {start}+{length} returned {len(data)} bytes")
return data
def member_limit(row: dict) -> int:
"""The most bytes kept for one member: its size when the row knows it (a longer result then fails the size
check), otherwise the row's cap."""
return row["size_bytes"] if row.get("size_bytes") is not None else cap_of(row)
def _too_large_unknown(row: dict, size: int, limit: int) -> None:
if row.get("size_bytes") is None and size > limit:
raise TooLarge(f"the member has {size} bytes, more than the cap of {limit} bytes")
def _finish(row, dest, data, url, matched_on, names=CHECKED_HASHES):
"""Check data against the row's size and hashes, write it to dest, -> the manifest fields."""
h = Hasher(len(data))
h.update(data)
why = verify(row, len(data), h.digests(), names=names)
if why:
return {"status": "failed", "url": url, "reason": why}
_write(dest, data)
return no_hash_fields(row, {"status": "ok", "path": str(dest), "bytes": len(data), "matched_on": matched_on,
"url": url},
h.digests()["sha256"], NO_HASH_MEMBER)
def _zip_member_bytes(url, timeout, opener, loff, method, csize, limit, read_cap=None):
"""The bytes of one zip member (read with Range requests from its local header), at most limit + 1 of them;
None when the local header signature is wrong. A compressed size above read_cap raises TooLarge before
anything is read."""
if read_cap is not None and csize > read_cap:
raise TooLarge(f"the compressed member has {csize} bytes, more than the cap of {read_cap} bytes")
head = _get_range(url, timeout, loff, ZIP_LOCAL_LEN, opener)
if head[:4] != ZIP_LOCAL_SIG:
return None
n, m = struct.unpack_from("<HH", head, 26)
start = loff + ZIP_LOCAL_LEN + n + m
raw = _get_range(url, timeout, start, csize, opener) if csize else b""
if method == 0:
return raw[:limit + 1]
if method == 8:
d = zlib.decompressobj(-15)
data = d.decompress(raw, limit + 1)
if len(data) <= limit and not d.unconsumed_tail:
data += d.flush()
return data
raise Unsupported(f"zip compression method {method}")
def fetch_member(row, dest, url, timeout, opener):
ze = row.get("zip_entry")
if not isinstance(ze, dict) or ze.get("local_header_offset") is None:
raise Unsupported("an archive member row without zip_entry")
limit = member_limit(row)
data = _zip_member_bytes(url, timeout, opener, ze["local_header_offset"], ze["compression_method"],
ze["compressed_size"], limit, whole_cap_of(row))
if data is None:
return {"status": "failed", "url": url, "reason": "the zip local header signature is wrong"}
_too_large_unknown(row, len(data), limit)
h = Hasher(len(data))
h.update(data)
why = verify(row, len(data), h.digests())
if why:
return {"status": "failed", "url": url, "reason": why}
_write(dest, data)
return no_hash_fields(row, {"status": "ok", "path": str(dest), "bytes": len(data), "matched_on": "zip_member",
"url": url},
h.digests()["sha256"], NO_HASH_MEMBER)
# BEGIN GENERATED ARCHIVE FORMATS
# Generated from archive_formats.tsv when tools/fetch.py is built. Do not edit by hand: edit the table
# and rebuild. Every archive and compression decision in this script reads ARCHIVE_FORMATS only.
# Columns: format, class, extensions, magic (hex, empty = none), offset, inner (the format when it holds a tar)
ARCHIVE_FORMATS = (
('zip', 'multi_member_archive', ('.zip',), '504b0304', 0, ''),
('tar', 'multi_member_archive', ('.tar',), '7573746172', 257, ''),
('tar.gz', 'multi_member_archive', ('.tar.gz', '.tgz'), '', 0, ''),
('tar.bz2', 'multi_member_archive', ('.tar.bz2', '.tbz2', '.tbz'), '', 0, ''),
('tar.xz', 'multi_member_archive', ('.tar.xz', '.txz'), '', 0, ''),
('tar.zst', 'multi_member_archive', ('.tar.zst', '.tzst'), '', 0, ''),
('tar.lz4', 'multi_member_archive', ('.tar.lz4',), '', 0, ''),
('tar.Z', 'multi_member_archive', ('.tar.z', '.taz'), '', 0, ''),
('7z', 'multi_member_archive', ('.7z',), '377abcaf271c', 0, ''),
('rar', 'multi_member_archive', ('.rar',), '526172211a07', 0, ''),
('cab', 'multi_member_archive', ('.cab',), '4d534346', 0, ''),
('gz', 'single_file_compression', ('.gz',), '1f8b', 0, 'tar.gz'),
('bz2', 'single_file_compression', ('.bz2',), '425a68', 0, 'tar.bz2'),
('xz', 'single_file_compression', ('.xz',), 'fd377a585a00', 0, 'tar.xz'),
('zst', 'single_file_compression', ('.zst',), '28b52ffd', 0, 'tar.zst'),
('lz4', 'single_file_compression', ('.lz4',), '04224d18', 0, 'tar.lz4'),
('Z', 'single_file_compression', ('.z',), '1f9d', 0, 'tar.Z'),
('npz', 'zip_container', ('.npz',), '504b0304', 0, ''),
('xlsx', 'zip_container', ('.xlsx', '.xlsm', '.xltx', '.xltm'), '504b0304', 0, ''),
('docx', 'zip_container', ('.docx', '.docm', '.dotx'), '504b0304', 0, ''),
('pptx', 'zip_container', ('.pptx', '.pptm', '.potx'), '504b0304', 0, ''),
('odf', 'zip_container', ('.odt', '.ods', '.odp', '.odg'), '504b0304', 0, ''),
('epub', 'zip_container', ('.epub',), '504b0304', 0, ''),
('jar', 'zip_container', ('.jar', '.war', '.ear', '.aar'), '504b0304', 0, ''),
('whl', 'zip_container', ('.whl',), '504b0304', 0, ''),
('apk', 'zip_container', ('.apk',), '504b0304', 0, ''),
('kmz', 'zip_container', ('.kmz',), '504b0304', 0, ''),
('nupkg', 'zip_container', ('.nupkg', '.vsix'), '504b0304', 0, ''),
)
# END GENERATED ARCHIVE FORMATS
def format_extensions(*names) -> tuple:
"""The extensions ARCHIVE_FORMATS gives the named formats, longest first."""
return tuple(sorted({e for f in ARCHIVE_FORMATS if f[0] in names for e in f[2]}, key=lambda e: (-len(e), e)))
# members of software packages: zip-based ones (wheel, jar, nupkg) through the central directory, tar-based
# ones (sdist, npm .tgz, .crate) by downloading the whole package within the cap. Which extensions mean which format
# comes from ARCHIVE_FORMATS; this script only names the formats it can read: the zip-based package formats, and
# the tar formats tarfile opens with the standard library (mode "r:*").
ZIP_PACKAGE_FORMATS = ("zip", "whl", "jar", "nupkg")
TAR_PACKAGE_FORMATS = ("tar", "tar.gz", "tar.bz2", "tar.xz")
EGG = ".egg" # a Python egg: a zip package, not in the format table
CRATE = ".crate" # a Cargo crate: a gzip tar under its own name, not in the format table
ZIP_SUFFIXES = format_extensions(*ZIP_PACKAGE_FORMATS) + (EGG,)
TAR_SUFFIXES = format_extensions(*TAR_PACKAGE_FORMATS) + (CRATE,)
SEVENZIP_SUFFIXES = format_extensions("7z")
ZIP_EOCD_SIG = b"PK\x05\x06"
ZIP64_LOCATOR_SIG = b"PK\x06\x07"
ZIP64_EOCD_SIG = b"PK\x06\x06"
ZIP_CD_SIG = b"PK\x01\x02"
ZIP_TAIL = 22 + 0xFFFF # end record plus the longest comment
ZIP_CD_MAX = 64_000_000
PACKAGE_CACHE_BYTES = 1_000_000_000 # packages kept on disk during one run, oldest dropped first
def package_kind(uri) -> str | None:
path = urllib.parse.urlsplit(str(uri or "")).path.lower()
if path.endswith(ZIP_SUFFIXES):
return "zip_package"
if path.endswith(TAR_SUFFIXES):
return "tar_package"
if path.endswith(SEVENZIP_SUFFIXES):
return "sevenzip_member"
return None
def zip_central_directory(url, timeout, opener) -> bytes:
"""The central directory of a remote zip: the end record is found in the last 64 KB (one Range request),
zip64 archives through their locator. Some servers (files.pythonhosted.org) answer 416 when the file is
shorter than the suffix asked for; the whole file is then read instead, as it is under 64 KB."""
try:
with opener(url, timeout, (None, ZIP_TAIL)) as r:
tail = r.read(ZIP_TAIL + 1)
except urllib.error.HTTPError as e:
if e.code != 416:
raise
with opener(url, timeout, None) as r:
tail = r.read(ZIP_TAIL + 1)
if len(tail) > ZIP_TAIL:
raise Unsupported("the server refused the 64 KB tail range of a file longer than 64 KB") from None
i = tail.rfind(ZIP_EOCD_SIG)
if i < 0 or len(tail) - i < 22:
raise Unsupported("no zip end record in the last 64 KB")
n_entries, cd_size, cd_off = struct.unpack_from("<HII", tail, i + 10)
if n_entries == 0xFFFF or 0xFFFFFFFF in (cd_size, cd_off):
j = i - 20
if j < 0 or tail[j:j + 4] != ZIP64_LOCATOR_SIG:
raise Unsupported("zip64 archive without a zip64 locator")
rec = _get_range(url, timeout, struct.unpack_from("<Q", tail, j + 8)[0], 56, opener)
if rec[:4] != ZIP64_EOCD_SIG:
raise Unsupported("the zip64 end record signature is wrong")
cd_size, cd_off = struct.unpack_from("<QQ", rec, 40)
if cd_size > ZIP_CD_MAX:
raise Unsupported(f"the zip central directory has {cd_size} bytes, more than {ZIP_CD_MAX}")
return _get_range(url, timeout, cd_off, cd_size, opener) if cd_size else b""
def zip_find(cd: bytes, name: str):
"""-> {local_header_offset, compression_method, compressed_size, size, crc32} of the entry called name, or
None."""
pos = 0
while pos + 46 <= len(cd):
if cd[pos:pos + 4] != ZIP_CD_SIG:
raise Unsupported("the zip central directory is damaged")
flags, method = struct.unpack_from("<HH", cd, pos + 8)
crc, csize, usize = struct.unpack_from("<III", cd, pos + 16)
nlen, xlen, clen = struct.unpack_from("<HHH", cd, pos + 28)
loff = struct.unpack_from("<I", cd, pos + 42)[0]
raw = cd[pos + 46:pos + 46 + nlen]
extra = cd[pos + 46 + nlen:pos + 46 + nlen + xlen]
pos += 46 + nlen + xlen + clen
if raw.decode("utf-8" if flags & 0x800 else "cp437", "replace") != name:
continue
if 0xFFFFFFFF in (usize, csize, loff):
k = 0
while k + 4 <= len(extra):
hid, hlen = struct.unpack_from("<HH", extra, k)
if hid == 1:
vals = list(struct.unpack_from(f"<{hlen // 8}Q", extra, k + 4))
if usize == 0xFFFFFFFF and vals:
usize = vals.pop(0)
if csize == 0xFFFFFFFF and vals:
csize = vals.pop(0)
if loff == 0xFFFFFFFF and vals:
loff = vals.pop(0)
break
k += 4 + hlen
return {"local_header_offset": loff, "compression_method": method, "compressed_size": csize,
"size": usize, "crc32": crc}
return None
def fetch_zip_package(row, dest, url, timeout, opener):
name = row.get("member_path")
e = zip_find(zip_central_directory(url, timeout, opener), name)
if e is None:
return {"status": "failed", "url": url, "reason": f"{name} is not in the package's central directory"}
limit = member_limit(row)
_too_large_unknown(row, e["size"], limit)
data = _zip_member_bytes(url, timeout, opener, e["local_header_offset"], e["compression_method"],
e["compressed_size"], max(limit, min(e["size"], whole_cap_of(row))),
whole_cap_of(row))
if data is None:
return {"status": "failed", "url": url, "reason": "the zip local header signature is wrong"}
if len(data) != e["size"] or zlib.crc32(data) & 0xFFFFFFFF != e["crc32"]:
return {"status": "failed", "url": url,
"reason": "the member does not match the size and CRC32 of the package's central directory"}
return _finish(row, dest, data, url, "zip_package")
_PACKAGES: dict = {"dir": None, "files": {}}
def clear_package_cache() -> None:
"""Delete the packages downloaded during this run."""
d, _PACKAGES["dir"] = _PACKAGES["dir"], None
_PACKAGES["files"].clear()
if d:
shutil.rmtree(d, ignore_errors=True)
def download_package(url, timeout, opener, limit) -> Path:
"""Download a whole package into a temporary directory kept for this run (reused for its other members);
stop with TooLarge after limit bytes."""
files = _PACKAGES["files"]
if url in files:
return files[url]
if _PACKAGES["dir"] is None:
_PACKAGES["dir"] = tempfile.mkdtemp(prefix="fetch-packages-")
path = Path(_PACKAGES["dir"], hashlib.sha256(url.encode("utf-8")).hexdigest()[:24])
n = 0
try:
with opener(url, timeout, None) as src, open(path, "wb") as out:
while True:
b = src.read(CHUNK)
if not b:
break
n += len(b)
if n > limit:
raise TooLarge(f"the package is larger than the cap of {limit} bytes; download stopped")
out.write(b)
except BaseException:
path.unlink(missing_ok=True)
raise
while files and sum(p.stat().st_size for p in files.values()) + n > PACKAGE_CACHE_BYTES:
old = next(iter(files))
files.pop(old).unlink(missing_ok=True)
files[url] = path
return path
def _tar_lookup(tf, name: str):
for n in (name, "./" + name, name[2:] if name.startswith("./") else None):
if n:
try:
return tf.getmember(n)
except KeyError:
continue
return None
def fetch_tar_package(row, dest, url, timeout, opener):
path = download_package(url, timeout, opener, whole_cap_of(row))
name = row.get("member_path")
limit = member_limit(row)
try:
tf = tarfile.open(path, "r:*")
except (tarfile.TarError, OSError, EOFError) as e:
return {"status": "failed", "url": url, "reason": f"cannot open the package as a tar archive: {e}"}
with tf:
m = _tar_lookup(tf, name)
if m is None:
return {"status": "failed", "url": url, "reason": f"{name} is not in the package"}
if not m.isfile():
return {"status": "failed", "url": url, "reason": f"{name} is not a regular file in the package"}
_too_large_unknown(row, m.size, limit)
f = tf.extractfile(m)
data = f.read(limit + 1) if f else b""
return _finish(row, dest, data, url, "tar_package")
# 7z members (the directory is read with Range requests; see sevenzip.py next to this script)
SEVENZIP_PIECE = 8 << 20
# where sevenzip.py is fetched from when it is not next to this script (uv run of the script alone): the tools/ folder
# of the index repository at the commit the run reads (set by main); the copy goes into a temporary folder
_SEVENZIP = {"url": None, "dir": None}
def _sevenzip():
try:
from . import sevenzip
except ImportError:
try:
import sevenzip
except ImportError:
return _sevenzip_from_repo()
return sevenzip
def _sevenzip_from_repo():
url = _SEVENZIP["url"]
if not url:
raise Unsupported("7z members need sevenzip.py next to this script") from None
try:
if _SEVENZIP["dir"] is None:
d = tempfile.mkdtemp(prefix="fetch_sevenzip_")
with open_url(url, 60) as r:
Path(d, "sevenzip.py").write_bytes(read_bounded(r, 4 << 20, "sevenzip.py"))
_SEVENZIP["dir"] = d
if _SEVENZIP["dir"] not in sys.path:
sys.path.insert(0, _SEVENZIP["dir"])
import sevenzip
except Exception as e: # noqa: BLE001
raise Unsupported(f"7z members need sevenzip.py; it is not next to this script and could not be read from "
f"{url}: {type(e).__name__}: {e}") from None
return sevenzip
def _range_pieces(url, timeout, opener, start, length):
end = start + length
for off in range(start, end, SEVENZIP_PIECE):
yield _get_range(url, timeout, off, min(SEVENZIP_PIECE, end - off), opener)
def fetch_sevenzip_member(row, dest, url, timeout, opener):
sz = _sevenzip()
name = row.get("member_path")
def read(off, ln):
return _get_range(url, timeout, off, ln, opener)
whole = whole_cap_of(row)
try:
sig = sz.parse_signature_header(read(0, sz.SIGNATURE_HEADER_LEN))
if sig.next_header_size > whole:
raise TooLarge(f"the 7z directory has {sig.next_header_size} bytes, more than the cap of {whole} bytes")
arc = sz.parse_header(sig, read(sig.header_pos, sig.next_header_size), read, limit=whole)
except sz.TooLarge7z as e:
raise TooLarge(f"7z: {e}") from None
except sz.Unsupported7z as e:
raise Unsupported(f"7z directory: {e}") from None
except sz.Format7zError as e:
return {"status": "failed", "url": url, "reason": f"cannot read the 7z directory: {e}"}
e = next((x for x in arc.entries if x.name == name and not x.is_dir), None)
if e is None:
return {"status": "failed", "url": url, "reason": f"{name} is not in the 7z directory"}
limit = member_limit(row)
_too_large_unknown(row, e.size, limit)
if e.folder is None or e.size == 0:
return _finish(row, dest, b"", url, "sevenzip_member")
folder = arc.folders[e.folder]
pstart, plen = arc.folder_pack(e.folder)
need = e.offset_in_folder + e.size
if need > max(whole, e.size if row.get("size_bytes") is not None else 0):
raise TooLarge(f"the member ends {need} bytes into a solid 7z block, more than the cap of {whole} bytes")
try:
if folder.methods == ["copy"]:
data = read(pstart + e.offset_in_folder, e.size)
if e.crc32 is not None and zlib.crc32(data) & 0xFFFFFFFF != e.crc32:
raise sz.Format7zError(f"{name}: CRC32 differs")
else:
try:
data = b"".join(sz.iter_entry(folder, e, _range_pieces(url, timeout, opener, pstart, plen)))
except sz.Unsupported7z:
if plen > whole or folder.unpack_size > whole:
raise TooLarge(f"the 7z block ({folder.unpack_size} bytes, coders {','.join(folder.methods)}) "
f"must be decoded whole and is larger than the cap of {whole} bytes") from None
data = sz.extract(arc, sz.decode_folder(folder, read(pstart, plen), limit=whole), e)
except sz.TooLarge7z as x:
raise TooLarge(f"7z block: {x}") from None
except sz.Unsupported7z as x:
raise Unsupported(f"7z block: {x}") from None
except sz.Format7zError as x:
return {"status": "failed", "url": url, "reason": f"7z member: {x}"}
return _finish(row, dest, data, url, "sevenzip_member")
# members of tar archives stored as gzip (the arXiv source bundles): the range is one gzip member
def fetch_gzip_member(row, dest, url, timeout, opener):
rng = _rng(row)
if rng is None or rng[1] is None:
raise Unsupported("a gzip member row needs a byte range")
limit = whole_cap_of(row)
if rng[1] > limit:
raise TooLarge(f"the gzip member has {rng[1]} compressed bytes, more than the cap of {limit} bytes")
raw = _get_range(url, timeout, rng[0], rng[1], opener)
parts, n, rest = [], 0, raw
while True: # a gzip file may hold several members; each is decompressed in turn
d = zlib.decompressobj(16 + zlib.MAX_WBITS)
try:
piece = d.decompress(rest, limit + 1 - n)
if not d.unconsumed_tail:
piece += d.flush()
except zlib.error as e:
return {"status": "failed", "url": url, "reason": f"cannot decompress the gzip member: {e}"}
n += len(piece)
if n > limit:
raise TooLarge(f"the member decompresses to more than the cap of {limit} bytes")
if not d.eof:
return {"status": "failed", "url": url, "reason": "the gzip member is incomplete"}
parts.append(piece)
rest = d.unused_data
if not rest:
break
last = parts[-1] # the gzip trailer (CRC32, length modulo 2^32) covers the last member only
want = row.get("payload_size_bytes")
if want is not None and len(last) % (1 << 32) != int(want):
return {"status": "failed", "url": url,
"reason": f"decompressed size differs: expected {want} (modulo 2^32), got {len(last)}"}
got = f"{zlib.crc32(last) & 0xFFFFFFFF:08x}"
tail = f"{struct.unpack('<I', raw[-8:-4])[0]:08x}"
want_crc = str((row.get("source_meta") or {}).get("crc32") or "").lower()
if got != tail or (want_crc and got != want_crc):
return {"status": "failed", "url": url,
"reason": f"CRC32 differs: computed {got}, gzip trailer {tail}, pointer {want_crc or '-'}"}
data = b"".join(parts)
hashes = row.get("hashes") or {}
h = Hasher(len(data))
h.update(data)
dg = h.digests()
why, _ = check_hashes(hashes, dg)
if why:
return {"status": "failed", "url": url, "reason": why}
_write(dest, data)
res = {"status": "ok", "path": str(dest), "bytes": len(data), "matched_on": "gzip_member", "crc32": got,
"url": url}
if not any(hashes.get(k) for k in ("md5", "sha1", "sha256")):
res["unverified"] = "checked against the gzip CRC32 and length; sha256 computed on download"
res["sha256"] = dg["sha256"]
return res
# requester-pays S3 (the requester's own AWS account pays; credentials come from the environment)
AWS_REGION = "us-east-1"
EMPTY_SHA256 = hashlib.sha256(b"").hexdigest()
def aws_credentials():
"""(access key, secret key, session token or None) from AWS_ACCESS_KEY_ID, AWS_SECRET_ACCESS_KEY and
AWS_SESSION_TOKEN, or None when they are not set. The script never stores or prints them."""
ak, sk = os.environ.get("AWS_ACCESS_KEY_ID"), os.environ.get("AWS_SECRET_ACCESS_KEY")
return (ak, sk, os.environ.get("AWS_SESSION_TOKEN") or None) if ak and sk else None
def _hmac(key: bytes, msg: str) -> bytes:
return hmac.new(key, msg.encode("utf-8"), hashlib.sha256).digest()
def sigv4_headers(method: str, url: str, headers: dict, access_key: str, secret_key: str, *,
region: str = AWS_REGION, service: str = "s3", now=None, payload_hash: str = EMPTY_SHA256) -> dict:
"""AWS Signature Version 4: -> the request headers plus host, x-amz-date, x-amz-content-sha256 and
Authorization. Every header given is signed; the path is encoded once, as S3 expects."""
u = urllib.parse.urlsplit(url)
now = now or datetime.datetime.now(datetime.timezone.utc)
amz_date = now.strftime("%Y%m%dT%H%M%SZ")
day = amz_date[:8]
h = {k.lower(): " ".join(str(v).split()) for k, v in headers.items()}
h["host"] = u.netloc
h["x-amz-date"] = amz_date
h["x-amz-content-sha256"] = payload_hash
names = sorted(h)
q = urllib.parse.parse_qsl(u.query, keep_blank_values=True)
enc = lambda s, keep: urllib.parse.quote(s, safe="/~" if keep else "~") # noqa: E731
canon_q = "&".join(f"{enc(k, False)}={enc(v, False)}" for k, v in sorted(q))
canon = "\n".join([method, enc(urllib.parse.unquote(u.path or "/"), True), canon_q,
"".join(f"{n}:{h[n]}\n" for n in names), ";".join(names), payload_hash])
scope = f"{day}/{region}/{service}/aws4_request"
to_sign = "\n".join(["AWS4-HMAC-SHA256", amz_date, scope, hashlib.sha256(canon.encode("utf-8")).hexdigest()])
k = _hmac(_hmac(_hmac(_hmac(("AWS4" + secret_key).encode("utf-8"), day), region), service), "aws4_request")
sig = hmac.new(k, to_sign.encode("utf-8"), hashlib.sha256).hexdigest()
out = {n: h[n] for n in names}
out["authorization"] = (f"AWS4-HMAC-SHA256 Credential={access_key}/{scope}, "
f"SignedHeaders={';'.join(names)}, Signature={sig}")
return out
S3_HOST_RE = re.compile(r"^(?:[a-z0-9.\-]+\.)?s3(?:[.\-][a-z0-9\-]+)?(?:\.dualstack\.[a-z0-9\-]+)?\.amazonaws\.com$")
def is_s3_host(url: str) -> bool:
"""True for an https address on an Amazon S3 host (s3.amazonaws.com, <bucket>.s3.amazonaws.com,
s3.<region>.amazonaws.com, s3-<region>.amazonaws.com and the bucket forms of those)."""
u = urllib.parse.urlsplit(url)
return u.scheme == "https" and u.port in (None, 443) and bool(S3_HOST_RE.match((u.hostname or "").lower()))
def requester_pays_opener(opener, creds, region: str = AWS_REGION):
"""Wrap opener so that every request to an S3 host is signed and carries x-amz-request-payer: requester.
Requests to any other host (an alternative address of the row) go out unsigned, with no credential header;
a redirect to another host drops the signature too (SafeRedirect)."""
ak, sk, token = creds
def op(url, timeout, rng=None, headers=None):
if not is_s3_host(url):
clean = {k: v for k, v in (headers or {}).items() if not SECRET_HEADERS.match(k)}
return opener(url, timeout, rng, headers=clean)
h = {"x-amz-request-payer": "requester", **(headers or {})}
if rng:
h["range"] = range_header(rng)
if token:
h["x-amz-security-token"] = token
return opener(url, timeout, rng, headers=sigv4_headers("GET", url, h, ak, sk, region=region))
return op
# single lichess games (public export API, one request at a time)
LICHESS_BASE = "https://lichess.org"
LICHESS_GAP = 1.0 # seconds between two requests
LICHESS_WAIT_429 = 60.0 # lichess asks clients to wait a full minute after HTTP 429
LICHESS_429_TRIES = 2
LICHESS_NOT_GAMES = {"training", "practice", "streamer", "tutorial", "analysis", "features", "insights",
"tutorials", "variants"}
LICHESS_GAME_RE = re.compile(r"^https?://(?:www\.)?lichess\.org/([A-Za-z0-9]{8})(?:[A-Za-z0-9]{4})?"
r"(?:/(?:white|black))?/?(?:#\d*)?$")
_LICHESS = {"last": None}
def lichess_game_id(row: dict):
"""The 8-character game id of a row that points to one lichess game: source_meta.game_id, or a game page
address (https://lichess.org/<id>, optionally with the 4 player characters, /white or /black, #ply)."""
sm = row.get("source_meta") if isinstance(row.get("source_meta"), dict) else {}
gid = sm.get("game_id")
if gid is None:
m = LICHESS_GAME_RE.match(str(row.get("uri") or ""))
gid = m.group(1) if m and m.group(1).lower() not in LICHESS_NOT_GAMES else None
return gid if isinstance(gid, str) and re.fullmatch(r"[A-Za-z0-9]{8}", gid) else None
def fetch_lichess_game(row, dest, url, timeout, opener, *, sleep=time.sleep):
limit = member_limit(row)
for attempt in range(LICHESS_429_TRIES + 1):
last = _LICHESS["last"]
if last is not None:
wait = LICHESS_GAP - (time.monotonic() - last)
if wait > 0:
sleep(wait)
try:
with opener(url, timeout, None, headers={"Accept": "application/x-chess-pgn"}) as src:
data = src.read(limit + 1)
except urllib.error.HTTPError as e:
if e.code == 429 and attempt < LICHESS_429_TRIES:
sleep(LICHESS_WAIT_429)
continue
raise
finally:
_LICHESS["last"] = time.monotonic()
break
_too_large_unknown(row, len(data), limit)
if not data.strip():
return {"status": "failed", "url": url, "reason": "the export returned no game"}
h = Hasher(len(data))
h.update(data)
why = verify(row, len(data), h.digests())
if why and (row.get("hashes") or row.get("size_bytes") is not None):
return {"status": "failed", "url": url, "reason": why}
_write(dest, data)
return no_hash_fields(row, {"status": "ok", "path": str(dest), "bytes": len(data),
"matched_on": "lichess_game_export", "url": url},
h.digests()["sha256"], "single-game export; sha256 computed on download")
# decompressing a fetched .gz, .bz2 or .zst file (--decompress)
DECODERS = {"gz": "gzip", "bz2": "bz2", "zst": "zstd"} # single-file compression format -> decoder this script has
DECOMPRESS = {e: DECODERS[f[0]] for f in ARCHIVE_FORMATS if f[0] in DECODERS for e in f[2]}
def decompress_target(path: Path, row: dict):
"""(kind, output path) for a compressed file, or (None, None)."""
kind = DECOMPRESS.get(path.suffix.lower())
if kind:
return kind, path.with_suffix("")
kind = DECOMPRESS.get("." + str(row.get("ext") or "").lower().lstrip("."))
return (kind, path.with_name(path.name + ".decompressed")) if kind else (None, None)
def _decompressor(kind: str, f):
if kind == "gzip":
return gzip.GzipFile(fileobj=f)
if kind == "bz2":
return bz2.BZ2File(f)
try:
import zstandard
except ImportError:
raise Unsupported("decompressing .zst needs the zstandard package (pip install zstandard)") from None
return zstandard.ZstdDecompressor().stream_reader(f, read_across_frames=True)
def decompress_file(path: Path, row: dict, limit: int):
"""Stream-decompress a fetched file next to it (every gzip member, bz2 stream or zstd frame), at most limit
bytes. On success the compressed file is deleted; otherwise it is kept. -> manifest fields, or None when
the file is not compressed."""
kind, out = decompress_target(path, row)
if kind is None:
return None
part = out.with_name(out.name + ".part")
h = Hasher(None)
try:
with open(path, "rb") as f, _decompressor(kind, f) as src, open(part, "wb") as o:
while True:
b = src.read(CHUNK)
if not b:
break
h.update(b)
if h.n > limit:
break
o.write(b)
except Unsupported as e:
part.unlink(missing_ok=True)
return {"status": "unsupported", "reason": str(e)}
except Exception as e: # noqa: BLE001 (any decoder error: the compressed file stays)
part.unlink(missing_ok=True)
return {"status": "failed", "reason": f"cannot decompress ({kind}): {type(e).__name__}: {e}"}
if h.n > limit:
part.unlink(missing_ok=True)
return {"status": "too_large", "reason": f"decompressed size is more than the cap of {limit} bytes; "
"the compressed file is kept"}
os.replace(part, out)
path.unlink()
return {"status": "ok", "path": str(out), "bytes": h.n, "sha256": h.digests()["sha256"],
"compressed_path": str(path)}
def method_of(row: dict) -> str:
if lichess_game_id(row):
return "lichess_game"
if row.get("zip_entry") is not None:
return "zip_member"
scope = row.get("hash_scope") or "file"
if scope == "gzip_member":
return "gzip_member"
if row.get("member_path") is not None and not _rng(row):
kind = package_kind(row.get("uri"))
if kind:
return kind
path = urllib.parse.urlsplit(str(row.get("uri") or "")).path
return f"unsupported:member of {posixpath.basename(path) or 'an unknown container'}"
if scope == "http_payload":
return "warc_record"
if scope == "api_body":
return "api_body"
if scope != "file":
return f"unsupported:{scope}"
return "range" if _rng(row) else "file"
FETCHERS = {"file": fetch_file, "range": fetch_file, "warc_record": fetch_payload, "api_body": fetch_api_body,
"zip_member": fetch_member, "zip_package": fetch_zip_package, "tar_package": fetch_tar_package,
"sevenzip_member": fetch_sevenzip_member, "gzip_member": fetch_gzip_member,
"lichess_game": fetch_lichess_game}
# access.needs_auth values that do not mark a row as needing a login
NOT_MARKED = (None, False, "no", "unknown", "")
AUTH_SKIP = {
"guestbook": "the dataset asks for a guestbook form before download; not filled in, no request sent",
"restricted": "restricted file; access must be requested from the dataset authors, no request sent",
"gated": "gated repository; access must be requested on the Hub and the download needs your token, no request "
"sent",
"kaggle_token": "the source needs a Kaggle account and API token, which this script does not use; no request "
"sent",
}
def needs_auth(row: dict):
"""The row's access.needs_auth when it marks a login, a form or an access request, else None."""
na = (row.get("access") or {}).get("needs_auth")
return None if na in NOT_MARKED else na
def auth_key(na) -> str:
"""needs_auth value -> the key it is counted under in the summary."""
return na if isinstance(na, str) else json.dumps(na)
def skip_reason(row: dict, today: str | None = None):
"""Why a row is skipped without a request (None: fetch it). Every needs_auth value other than NOT_MARKED is
skipped, except requester_pays with AWS credentials set and embargoed from the day in access.embargo_until
(an embargo without a date stays skipped)."""
na = needs_auth(row)
if na is None:
return None
if na == "requester_pays":
if aws_credentials() is not None:
return None
return ("requester-pays bucket: set AWS_ACCESS_KEY_ID and AWS_SECRET_ACCESS_KEY (your own AWS account pays "
"the request and transfer charges); no request sent")
if na == "embargoed":
until = str((row.get("access") or {}).get("embargo_until") or "")[:10]
if until and until <= (today or utc_today()):
return None
return f"embargoed until {until or 'a date the source does not give'}; no request sent"
return AUTH_SKIP.get(na) or f"the source marks this row as needing access ({auth_key(na)}); no request sent"
def mismatch(res: dict) -> bool:
"""True for a fetch result that failed because the size or a hash of the download did not match its row."""
return res.get("status") == "failed" and bool(MISMATCH.search(str(res.get("reason") or "")))
API_MIN_INTERVAL = 1.0 # seconds between two API requests to one host (provisional: no source states a limit)
# provisional per-host intervals from the hosts' published limits: NVD allows 5 requests in 30 s without an API key
API_HOST_INTERVAL = {"services.nvd.nist.gov": 6.0}
_HOST_LAST: dict = {}
_clock = time.monotonic
def host_wait(url: str, sleep=time.sleep) -> None:
"""Wait until API_MIN_INTERVAL (or the host's API_HOST_INTERVAL) has passed since the last API request to the
same host."""
host = (urllib.parse.urlsplit(url).hostname or "").lower()
gap = API_HOST_INTERVAL.get(host, API_MIN_INTERVAL)
last = _HOST_LAST.get(host)
if last is not None:
left = gap - (_clock() - last)
if left > 0:
sleep(left)
_HOST_LAST[host] = _clock()
def already_present(row: dict, dest: Path, method: str):
"""The manifest fields of a whole file (or byte range) already at dest from an earlier run whose size and
sha256 (and every other published hash) match the row, else None. Rolling files are always downloaded."""
hashes = row.get("hashes") or {}
want = row.get("size_bytes")
if method not in ("file", "range") or want is None or not hashes.get("sha256") or is_rolling(row) \
or marked_rolling(row) or dest.is_symlink() or not dest.is_file() or dest.stat().st_size != want:
return None
h = Hasher(want)
with open(dest, "rb") as f:
for b in iter(lambda: f.read(CHUNK), b""):
h.update(b)
got = h.digests()
if verify(row, h.n, got):
return None
return {"status": "ok", "path": str(dest), "bytes": h.n, "sha256": got["sha256"], "already_present": True}
def _file_sha256(path: Path) -> str:
h = hashlib.sha256()
with open(path, "rb") as f:
for b in iter(lambda: f.read(CHUNK), b""):
h.update(b)
return h.hexdigest()
# Local reuse (the build rule shared by this tool, to_pool and pool-build): before a whole file is fetched,
# look for a file with the same bytes under the local roots (ARTPOOL_LOCAL_ROOTS or --local-root, directories
# separated by os.pathsep) and in the staging directory (ARTPOOL_STAGING or --staging, where an outside fetch
# drops a file). A file whose size and every published hash match the row is used with no network request
# (obtained: reused, or staged for the staging directory); a candidate (same name or same size) whose hashes do
# not match is never used and is reported. A row with no local match is fetched (obtained: fetched).
LOCAL_ROOTS_ENV = "ARTPOOL_LOCAL_ROOTS"
STAGING_ENV = "ARTPOOL_STAGING"
# The record the staging step (artpool.stage_receive) appends one line to per request it streams into the staging
# directory: url, status, bytes, sha256, started_at and finished_at (UTC). A staged file's retrieved date is the
# date of that stream.
STAGING_RECORD = "staging_attempts.jsonl"
# Pool manifests (to_pool and pool-build both write <pool>/_meta/manifest.jsonl) whose retrieved dates count
# as the original fetch of a reused file; fetch manifests are MANIFEST (fetch_manifest.jsonl).
POOL_MANIFEST = "manifest.jsonl"
UNKNOWN = "unknown"
# The one wall clock of this tool, the staging step (artpool.stage_receive) and pool-build: every timestamp they
# write (reused_at, fetched_at, started_at, finished_at, run_id) and every "today" they default to is read through
# utc_now, in UTC whatever the machine's time zone. Timestamps are YYYY-MM-DDTHH:MM:SSZ (the Z says UTC), dates
# YYYY-MM-DD (the UTC date). It lives here, not in its own module, because this file is also published alone as fetch.py.
def utc_now() -> datetime.datetime:
"""The current time, timezone-aware, in UTC."""
return datetime.datetime.now(datetime.timezone.utc)
def utc_stamp() -> str:
"""utc_now() as YYYY-MM-DDTHH:MM:SSZ."""
return utc_now().strftime("%Y-%m-%dT%H:%M:%SZ")
def utc_today() -> str:
"""The UTC date of utc_now() as YYYY-MM-DD."""
return utc_now().date().isoformat()
def _run_id_time(run_id) -> str | None:
"""A manifest line's run_id (%Y%m%dT%H%M%S.%fZ, the UTC start of its run) -> ISO time, None if not one."""
try:
t = datetime.datetime.strptime(str(run_id), "%Y%m%dT%H%M%S.%fZ")
except ValueError:
return None
return t.replace(tzinfo=datetime.timezone.utc).isoformat().replace("+00:00", "Z")
class LocalFiles:
"""The files under the local roots and the staging directory, looked up by sha256 against a row."""
def __init__(self, roots=(), staging=None, log=None):
self.roots = [Path(r).expanduser() for r in roots if str(r)]
self.staging = Path(staging).expanduser() if staging else None
self.log = log or (lambda msg: print(msg, file=sys.stderr))
self._files = None
self._sha = {}
self._prov = None
self.counts = {"reused": 0, "staged": 0, "fetched": 0, "refused": 0}
@classmethod
def from_settings(cls, roots=None, staging=None, log=None):
"""From the arguments, else the environment variables; None when neither names a directory."""
if roots is None:
roots = [x for x in os.environ.get(LOCAL_ROOTS_ENV, "").split(os.pathsep) if x]
staging = staging if staging is not None else (os.environ.get(STAGING_ENV) or None)
if not roots and not staging:
return None
return cls(roots, staging, log)
def _walk(self) -> list:
if self._files is None:
self._files = []
dirs = [(r, "reused") for r in self.roots] + ([(self.staging, "staged")] if self.staging else [])
for d, how in dirs:
if not d.is_dir():
self.log(f"local reuse: {d} is not a directory, ignored")
continue
for p in sorted(d.rglob("*")):
if p.is_file() and not p.is_symlink() and not p.name.endswith((".part", ".stale", ".bad")):
self._files.append((p, how, p.stat().st_size))
return self._files
def _records(self) -> dict:
"""sha256 -> the fetch records of those bytes found under the local roots and in the staging directory:
fetch manifests (an ok line fetched by this tool: retrieved, else the date of its run_id; fetched_from its
url), pool manifests (_meta/manifest.jsonl: retrieved, fetched_from) and the staging record (one line per
streamed request: the date of finished_at). A line that itself reused or staged a file counts only with its
own retrieved, which then is the original's. Each record: retrieved, fetched_from, fetched_at, route, record."""
if self._prov is not None:
return self._prov
self._prov = {}
def add(sha, rec):
if sha and rec.get("retrieved"):
self._prov.setdefault(str(sha).lower(), []).append(rec)
def lines(p):
try:
with open(p, encoding="utf-8") as f:
for ln in f:
try:
x = json.loads(ln)
except ValueError:
continue
if isinstance(x, dict):
yield x
except OSError as e:
self.log(f"local reuse: {p} not read: {e}")
for d in self.roots:
if not d.is_dir():
continue
for p in sorted(d.rglob(MANIFEST)):
for x in lines(p):
if x.get("status") != "ok" or not x.get("sha256"):
continue
if x.get("obtained") in ("reused", "staged"):
retrieved, at = x.get("retrieved"), x.get("fetched_at")
else:
at = x.get("fetched_at") or _run_id_time(x.get("run_id"))
retrieved = x.get("retrieved") or (at[:10] if at else None)
if retrieved == UNKNOWN:
continue
add(x["sha256"], {"retrieved": retrieved, "fetched_from": x.get("fetched_from") or x.get("url"),
"fetched_at": at, "route": x.get("route"), "record": str(p)})
for p in sorted(d.rglob(POOL_MANIFEST)):
if p.parent.name != "_meta":
continue
for x in lines(p):
if not x.get("retrieved") or x.get("retrieved") == UNKNOWN:
continue
rec = {"retrieved": x["retrieved"], "fetched_from": x.get("fetched_from") or x.get("url"),
"fetched_at": x.get("fetched_at"), "route": x.get("route"), "record": str(p)}
for k in ("sha256", "upstream_sha256"):
add(x.get(k), rec)
if self.staging is not None and (self.staging / STAGING_RECORD).is_file():
p = self.staging / STAGING_RECORD
for x in lines(p):
at = x.get("finished_at")
if x.get("kept") and at and x.get("sha256"):
add(x["sha256"], {"retrieved": str(at)[:10], "fetched_from": x.get("url"), "fetched_at": at,
"route": x.get("route") or "staged", "record": str(p)})
return self._prov
def provenance(self, sha256: str, how: str) -> dict:
"""The original fetch of these bytes -> retrieved (that day, never the day of this build), fetched_from,
fetched_at, route and the record it was read from. A staged file takes it from the staging record only;
a reused file from the earliest dated fetch or pool manifest record. With no record: retrieved unknown and
retrieved_reason."""
recs = self._records().get(str(sha256).lower(), [])
staged = [r for r in recs if r["record"].endswith(STAGING_RECORD)]
pick = staged if how == "staged" else [r for r in recs if r not in staged] or staged
if not pick:
where = "the staging record " + STAGING_RECORD if how == "staged" else \
"any fetch manifest or pool manifest under the local roots"
return {"retrieved": UNKNOWN, "retrieved_reason": f"no record of sha256 {sha256} in {where}"}
r = min(pick, key=lambda r: (str(r["retrieved"]), str(r.get("fetched_at") or "")))
return {k: v for k, v in r.items() if v is not None}
def _digests(self, p: Path, size: int) -> tuple:
if p not in self._sha:
h = Hasher(size)
with open(p, "rb") as f:
for b in iter(lambda: f.read(CHUNK), b""):
h.update(b)
self._sha[p] = (h.n, h.digests())
return self._sha[p]
def find(self, row: dict, name: str | None = None):
"""-> (path, "reused"|"staged") of a local file whose size and every published hash match the row, else None.
Only whole files (or byte ranges) with a recorded sha256 and size; rolling files are always fetched."""
hashes = row.get("hashes") or {}
want, sha = row.get("size_bytes"), str(hashes.get("sha256") or "").lower()
if want is None or not sha or is_rolling(row) or marked_rolling(row) \
or method_of(row) not in ("file", "range"):
return None
name = name or posixpath.basename(str(row.get("path") or row.get("uri") or ""))
for p, how, size in self._walk():
if size != int(want) and p.name != name:
continue
n, got = self._digests(p, size)
if n == int(want) and not verify(row, n, got):
return p, how
self.counts["refused"] += 1
self.log(f"local reuse: {p} refused for {row.get('pointer_id') or name}: {n} bytes sha256 "
f"{got.get('sha256')}, the record wants {want} bytes sha256 {sha}")
return None
def take(self, row: dict, dest: Path, name: str | None = None):
"""Copy the matching local file to dest -> its manifest fields (bytes and sha256 computed again from the
copy), or None when nothing local matches (the row is then fetched and counted so)."""
hit = self.find(row, name)
if hit is None:
self.counts["fetched"] += 1
return None
src, how = hit
dest.parent.mkdir(parents=True, exist_ok=True)
part = dest.with_name(dest.name + ".part")
shutil.copyfile(src, part)
n = Hasher(part.stat().st_size)
with open(part, "rb") as f:
for b in iter(lambda: f.read(CHUNK), b""):
n.update(b)
got = n.digests()
if verify(row, n.n, got): # the file changed under us: never used
part.unlink(missing_ok=True)
self.counts["refused"] += 1
self.counts["fetched"] += 1
self.log(f"local reuse: {src} changed while copied, refused")
return None
os.replace(part, dest)
self.counts[how] += 1
prov = self.provenance(got["sha256"], how)
if prov.get("retrieved_reason"):
self.log(f"local reuse: {row.get('pointer_id') or name}: retrieved {UNKNOWN}, {prov['retrieved_reason']}")
# retrieved, fetched_from, fetched_at, route: the original fetch of these bytes (no request is made now);
# reused_at: when this build copied them (UTC, from utc_now)
return {"status": "ok", "path": str(dest), "bytes": n.n, "sha256": got["sha256"], "obtained": how,
"local_path": str(src), **{k: v for k, v in prov.items() if k != "record"},
**({"provenance_record": prov["record"]} if prov.get("record") else {}),
"reused_at": utc_stamp()}
def summary(self) -> str:
c = self.counts
return (f"local reuse: {c['reused']} reused, {c['staged']} staged, {c['fetched']} fetched, "
f"{c['refused']} refused")
LFS_POINTER_HEAD = b"version https://git-lfs.github.com/spec/v1"
def is_lfs_pointer(path: Path) -> bool:
"""True for a small text file that is a Git LFS pointer (what a repository holds in place of an LFS object)."""
try:
if path.stat().st_size > 1024:
return False
with open(path, "rb") as f:
return f.read(len(LFS_POINTER_HEAD)) == LFS_POINTER_HEAD
except OSError:
return False
def fetch_one(row: dict, out: Path, **kw) -> dict:
"""Fetch one row into out -> its manifest line. Adds what the row expected (expected_size, expected_sha256),
what was written (bytes, sha256), the published hashes this tool cannot check (unchecked_hashes); when the
fetch fails, a file an earlier run left at the destination is renamed to <name>.stale (stale_path)."""
res = _fetch_one(row, out, **kw)
st = res.get("status")
if st in ("skipped", "unsafe_path"):
return res
hashes = row.get("hashes") or {}
if row.get("size_bytes") is not None:
res["expected_size"] = row["size_bytes"]
if hashes.get("sha256"):
res.setdefault("expected_sha256", str(hashes["sha256"]).lower())
uh = unchecked_hashes(row)
if uh:
res["unchecked_hashes"] = uh
if st == "ok" and res.get("path") and "sha256" not in res and Path(res["path"]).is_file():
res["sha256"] = _file_sha256(Path(res["path"]))
if st == "ok" and res.get("path") and is_lfs_pointer(Path(res["path"])):
Path(res["path"]).unlink(missing_ok=True)
res = {**res, "status": "failed", "reason": "the download is a Git LFS pointer file, not the file it names; "
"nothing written"}
res.pop("path", None)
st = "failed"
if st in ("failed", "too_large"):
try:
dest = dest_path(out, row)
except UnsafePath:
return res
if dest.is_file() and not dest.is_symlink():
stale = dest.with_name(dest.name + ".stale")
os.replace(dest, stale)
res["stale_path"] = str(stale)
return res
def _fetch_one(row: dict, out: Path, *, timeout: float = 120, opener=open_url, retries: int = RETRIES,
backoff: float | None = None, sleep=time.sleep, verify_retries: int = VERIFY_RETRIES,
skip_present: bool = False, local: LocalFiles | None = None) -> dict:
backoff = BACKOFF if backoff is None else backoff
base = {"pointer_id": row.get("pointer_id")}
why = skip_reason(row)
if why:
return {**base, "status": "skipped", "reason": why, "needs_auth": needs_auth(row)}
method = method_of(row)
fn = FETCHERS.get(method)
size, cap = row.get("size_bytes"), cap_of(row)
if size is not None and int(size) > cap:
return {**base, "status": "too_large", "method": method,
"reason": f"size {int(size)} is more than the cap of {cap} bytes; not downloaded"}
if method == "lichess_game":
urls = [f"{LICHESS_BASE}/game/export/{lichess_game_id(row)}"]
fn = (lambda f: lambda *a: f(*a, sleep=sleep))(fn)
elif row.get("_local_file"):
urls = [row["_local_file"]]
opener = local_file_opener(row["_local_file"])
else:
urls = [u for u in candidates(row) if u.startswith(("https://", "http://"))]
if fn is None or not urls:
return {**base, "status": "unsupported", "method": method,
"reason": "no supported address" if fn else f"fetch method {method}"}
if (row.get("access") or {}).get("needs_auth") == "requester_pays":
opener = requester_pays_opener(opener, aws_credentials(), (row.get("access") or {}).get("region") or AWS_REGION)
try:
dest = dest_path(out, row)
dest.parent.mkdir(parents=True, exist_ok=True)
dest_path(out, row) # again after mkdir: a directory created meanwhile must not be a link out of --out
except (UnsafePath, OSError) as e:
return {**base, "status": "unsafe_path", "method": method, "reason": f"{e}; nothing written"}
pre = already_present(row, dest, method) if skip_present else None
if pre:
return {**base, "method": method, **pre}
if local is not None and not row.get("_local_file"):
hit = local.take(row, dest)
if hit:
# url: the address this file is fetched from, kept for the pool's fetched_from (nothing was requested)
return {**base, "method": method, "url": hit.get("fetched_from") or urls[0], **hit}
base["obtained"] = "fetched"
errors, n_retry, refused = [], 0, []
for url in urls:
k = 0
while True:
try:
if method == "api_body":
host_wait(url, sleep)
res = fn(row, dest, url, timeout, opener)
except TooLarge as e:
return {**base, "status": "too_large", "method": method, "reason": str(e), "url": url,
**({"retries": n_retry} if n_retry else {}), **_attempts(refused)}
except Unsupported as e:
errors.append(f"{url}: {e}")
break
except Exception as e: # noqa: BLE001 (network errors: retry the transient ones, then the next address)
if transient(e) and k < retries:
n_retry += 1
sleep(backoff * 2 ** k)
k += 1
continue
errors.append(f"{url}: {type(e).__name__}: {e}")
break
if mismatch(res) and len(refused) < verify_retries:
refused.append(str(res["reason"]))
sleep(backoff * 2 ** (len(refused) - 1))
continue
if refused and mismatch(res):
refused.append(str(res["reason"]))
return {**base, "method": method, **res, **({"retries": n_retry} if n_retry else {}),
"attempts": len(refused), "attempt_reasons": refused}
return {**base, "method": method, **res, **({"retries": n_retry} if n_retry else {}),
**_attempts(refused)}
return {**base, "status": "failed", "method": method, "reason": "; ".join(errors) or "no address answered",
**({"retries": n_retry} if n_retry else {})}
def _attempts(refused: list) -> dict:
"""Manifest fields of a row that was downloaded again after a size or hash mismatch: attempts (downloads in
all) and attempt_reasons (why each refused download was refused)."""
return {"attempts": len(refused) + 1, "attempt_reasons": list(refused)} if refused else {}
# ---------- units stored inside a container ----------
# A row of a collection whose unit is stored inside another file (a member of a zip or tar archive, a compressed or
# encoded file) points at that upstream file: its size and hashes are the upstream file's, and source_meta.transform
# lists the steps that make the unit out of it (unzip:<member>, untar:<member>, gunzip and the others of
# transform.py), with unit_sha256 and unit_bytes for the unit (content_sha256 for the bytes before a final gzip
# step). fetch.py downloads and checks the upstream file, makes the unit with transform.py and checks it against
# unit_sha256 (or content_sha256); the unit is written under the unit's path and the upstream file is not kept.
# transform.py is taken from the artpool package, from next to this script, or else from tools/ of the index at the
# commit read (set by main), like sevenzip.py.
_TRANSFORM = {"src": None, "mod": None}
def unit_steps(row: dict):
"""The transform steps of a unit stored inside another file (source_meta.transform), else None."""
sm = row.get("source_meta") if isinstance(row.get("source_meta"), dict) else {}
t = sm.get("transform")
return [str(s) for s in t] if isinstance(t, list) and t else None
def _transform():
if _TRANSFORM["mod"] is not None:
return _TRANSFORM["mod"]
try:
from . import public_transform as t
except ImportError:
try:
import transform as t
if not (hasattr(t, "apply") and hasattr(t, "validate")):
raise ImportError("transform is not transform.py")
except ImportError:
t = _transform_from_repo()
_TRANSFORM["mod"] = t
return t
def _transform_from_repo():
import importlib.util
src = _TRANSFORM["src"]
if not src:
raise Unsupported("units stored inside another file need transform.py next to this script")
try:
if "://" in src:
d = tempfile.mkdtemp(prefix="fetch_transform_")
path = Path(d, "transform.py")
with open_url(src, 60) as r:
path.write_bytes(read_bounded(r, 4 << 20, "transform.py"))
else:
path = Path(src)
spec = importlib.util.spec_from_file_location("transform", str(path))
mod = importlib.util.module_from_spec(spec)
spec.loader.exec_module(mod)
except Exception as e: # noqa: BLE001
raise Unsupported(f"units stored inside another file need transform.py; it is not next to this script and "
f"could not be read from {src}: {type(e).__name__}: {e}") from None
return mod
def fetch_unit(row: dict, out: Path, **kw) -> dict:
"""fetch_one, and for a unit stored inside another file (unit_steps) the unit made out of the downloaded file
and checked against the unit's recorded hash (extract_unit). A unit already at its path from an earlier run whose
sha256 is unit_sha256 is kept without a download (already_present)."""
steps = unit_steps(row)
if steps is None:
return fetch_one(row, out, **kw)
sm = row["source_meta"]
want = str(sm.get("unit_sha256") or "").lower()
if kw.get("skip_present") and want:
try:
dest = dest_path(out, row)
except UnsafePath:
dest = None
if dest is not None and dest.is_file() and not dest.is_symlink() and _file_sha256(dest) == want:
return {"pointer_id": row.get("pointer_id"), "method": method_of(row), "status": "ok", "path": str(dest),
"bytes": dest.stat().st_size, "sha256": want, "already_present": True, "extracted": True,
"unit_verified": True}
res = fetch_one(row, out, **kw)
if res.get("status") != "ok" or not res.get("path"):
return res
return extract_unit(row, res, steps)
def extract_unit(row: dict, res: dict, steps: list) -> dict:
"""The downloaded upstream file at res["path"] -> the unit at the same path, made with the transform steps and
checked against unit_sha256 (or content_sha256 when the last step is gzip, whose bytes depend on the zlib build).
The result keeps the upstream file's size and sha256 as upstream_bytes and upstream_sha256 and gets bytes and
sha256 of the unit, content_sha256, extracted and unit_verified (false when the row records no unit hash). A
unit that cannot be made or does not match fails; the upstream file is then renamed to <name>.stale."""
sm = row["source_meta"]
want = str(sm.get("unit_sha256") or "").lower()
want_c = str(sm.get("content_sha256") or "").lower()
src = Path(res["path"])
tmp = src.with_name(src.name + ".unit")
ub = sm.get("unit_bytes")
try:
t = _transform()
limit = max(t.MAX_BYTES, int(ub)) if isinstance(ub, int) else t.MAX_BYTES
got = t.apply(src, steps, tmp, max_bytes=limit)
why = None
if (want or want_c) and not (got["sha256"] == want or (want_c and got["content_sha256"] == want_c)):
why = (f"the unit made with {', '.join(steps)} has sha256 {got['sha256']}, the index records "
f"{want or want_c}")
except (Unsupported, ValueError, OSError) as e:
why = f"could not make the unit with {', '.join(steps)}: {e}"
if why is not None:
tmp.unlink(missing_ok=True)
out = {**res, "status": "failed", "reason": why + "; the downloaded file is kept as <name>.stale"}
out.pop("path", None)
if src.is_file() and not src.is_symlink():
stale = src.with_name(src.name + ".stale")
os.replace(src, stale)
out["stale_path"] = str(stale)
return out
os.replace(tmp, src)
out = {**res, "upstream_bytes": res.get("bytes"), "upstream_sha256": res.get("sha256"), "bytes": got["bytes"],
"sha256": got["sha256"], "content_sha256": got["content_sha256"], "extracted": True,
"unit_verified": bool(want or want_c)}
if want:
out["expected_sha256"] = want
if isinstance(ub, int):
out["expected_size"] = ub
return out
# ---------- content check ----------
CONTENT_CHECKS = ("scanned_pdf", "error_page", "ext_mismatch")
CHECK_TIMEOUT = 60
CHECK_READ = 200_000
PDF_PAGES_READ = 5
PDF_MIN_CHARS_PER_PAGE = 20
ERROR_BODY_SHORT = 3000
ERROR_BODY_HEAD = 1500
ERROR_WORDS = re.compile(
r"\b(404|403|500|502|503)\b|not\s+found|page\s+cannot\s+be|cannot\s+be\s+(found|displayed)|\berror\b|"
r"access\s+denied|forbidden|object\s+moved|has\s+moved|moved\s+permanently|no\s+longer\s+(available|exists)|"
r"temporarily\s+unavailable|session\s+(has\s+)?expired|server\s+error|bad\s+request|invalid\s+(request|url)|"
r"unauthori[sz]ed|redirect", re.I)
TEXT_EXTS = frozenset({"html", "htm", "xhtml", "txt", "text", "xml", "csv", "log", "kml", "sql"})
_OLE = frozenset({"application/cdfv2", "application/vnd.ms-office", "application/x-ole-storage",
"application/cdfv2-unknown"})
_TXT = frozenset({"text/plain", "text/html", "text/xml"})
_OOXML = "application/vnd.openxmlformats-officedocument."
EXT_MIME = {
"pdf": {"application/pdf"},
"html": _TXT, "htm": _TXT, "xhtml": _TXT | {"application/xhtml+xml"},
"txt": _TXT | {"text/x-c", "text/x-c++", "text/x-fortran", "text/x-makefile", "text/x-shellscript", "text/x-tex",
"text/x-asm", "text/x-po", "text/x-java", "text/x-perl", "text/csv", "text/x-diff", "text/x-ruby",
"text/x-script.python", "text/rtf", "text/x-pascal", "text/troff", "text/x-lisp", "text/x-awk",
"text/x-msdos-batch", "application/csv", "application/json"},
"text": _TXT, "log": {"text/plain"},
"xml": _TXT | {"application/xml", "image/svg+xml"},
"kml": _TXT | {"application/xml", "application/vnd.google-earth.kml+xml"},
"csv": {"text/csv", "text/plain", "application/csv"},
"json": {"application/json", "text/plain"},
"sql": {"text/plain", "text/x-c", "text/x-c++"},
"jpg": {"image/jpeg"}, "jpeg": {"image/jpeg"}, "gif": {"image/gif"}, "png": {"image/png"},
"doc": {"application/msword"} | _OLE, "xls": {"application/vnd.ms-excel"} | _OLE,
"ppt": {"application/vnd.ms-powerpoint"} | _OLE, "pps": {"application/vnd.ms-powerpoint"} | _OLE,
"docx": {_OOXML + "wordprocessingml.document", "application/zip"},
"xlsx": {_OOXML + "spreadsheetml.sheet", "application/zip"},
"pptx": {_OOXML + "presentationml.presentation", "application/zip"},
"ps": {"application/postscript"}, "eps": {"application/postscript", "image/x-eps"},
"rtf": {"text/rtf"},
"zip": {"application/zip"}, "gz": {"application/gzip", "application/x-gzip"},
"swf": {"application/x-shockwave-flash"},
}
def run_tool(cmd: list, timeout: float = CHECK_TIMEOUT):
"""Run a system tool; returns (returncode, stdout) or None when the tool is not installed."""
if shutil.which(cmd[0]) is None:
return None
try:
r = subprocess.run(cmd, capture_output=True, timeout=timeout, check=False)
except subprocess.TimeoutExpired:
return -9, ""
except OSError:
return None
return r.returncode, r.stdout.decode("utf-8", "replace")
def _text_of(data: bytes):
s = data.decode("latin-1")
m = re.search(r"<title[^>]*>(.*?)</title>", s, re.I | re.S)
title = re.sub(r"\s+", " ", m.group(1)).strip() if m else ""
body = re.sub(r"(?is)<(script|style)[^>]*>.*?</\1>", " ", s)
body = re.sub(r"(?s)<[^>]+>", " ", body)
body = re.sub(r" | ", " ", body)
return title, re.sub(r"\s+", " ", body).strip()
def _scanned_pdf(path: Path):
"""(result, detail, skip reason) for one PDF."""
fonts = run_tool(["pdffonts", str(path)])
if fonts is None:
return "skipped", {}, "pdffonts not installed (poppler-utils)"
if fonts[0] != 0:
return "skipped", {}, "pdffonts could not read the file"
text = run_tool(["pdftotext", "-l", str(PDF_PAGES_READ), "-q", str(path), "-"])
if text is None:
return "skipped", {}, "pdftotext not installed (poppler-utils)"
if text[0] != 0:
return "skipped", {}, "pdftotext could not read the file"
n_fonts = max(0, len(fonts[1].strip().splitlines()) - 2)
pages = max(1, min(PDF_PAGES_READ, text[1].count("\f")))
chars = len(re.sub(r"\s", "", text[1]))
detail = {"pdf_fonts": n_fonts, "pdf_text_chars": chars, "pdf_pages_read": pages}
flagged = n_fonts == 0 and chars < PDF_MIN_CHARS_PER_PAGE * pages
return ("flagged" if flagged else "clean"), detail, None
def check_content(path: Path, ext: str | None = None) -> dict:
"""The three content checks for one downloaded file (see the module docstring)."""
path = Path(path)
ext = (ext or path.suffix).lower().lstrip(".")
out: dict = {}
skipped: dict = {}
with open(path, "rb") as f:
head = f.read(CHECK_READ)
m = run_tool(["file", "-b", "--mime-type", str(path)])
mime = m[1].strip().lower() if m and m[0] == 0 and m[1].strip() else None
if mime:
out["mime"] = mime
is_pdf = mime == "application/pdf" if mime else head[:1024].lstrip().startswith(b"%PDF-")
if is_pdf:
res, detail, why = _scanned_pdf(path)
out["scanned_pdf"] = res
out.update(detail)
if why:
skipped["scanned_pdf"] = why
else:
out["scanned_pdf"] = "not_applicable"
if ext in TEXT_EXTS or mime in ("text/html", "text/xml", "application/xhtml+xml"):
title, body = _text_of(head)
hit = bool(ERROR_WORDS.search(title)) or (
len(body) < ERROR_BODY_SHORT and bool(ERROR_WORDS.search(body[:ERROR_BODY_HEAD])))
out["error_page"] = "flagged" if hit else "clean"
if hit:
out["error_hint"] = (title + " | " + body[:200])[:300]
else:
out["error_page"] = "not_applicable"
allowed = EXT_MIME.get(ext)
if allowed is None:
out["ext_mismatch"] = "not_applicable"
elif path.stat().st_size == 0:
out["ext_mismatch"] = "not_applicable"
out["empty"] = True
elif mime is None:
out["ext_mismatch"] = "skipped"
skipped["ext_mismatch"] = "file not installed" if m is None else "file could not read the file"
else:
out["ext_mismatch"] = "clean" if mime in allowed else "flagged"
out["flags"] = [c for c in CONTENT_CHECKS if out[c] == "flagged"]
if skipped:
out["skipped"] = skipped
return out
# ---------- the output layout ----------
META_OUT = "_meta" # under --out: manifest.jsonl, sizes.tsv, fetch_manifest.jsonl, fetch_run.json
ANSWER_DIR = "answer"
LAYOUT_FIELDS = ("source", "path", "url", "sha256", "bytes", "spdx", "licence_url", "publisher", "retrieved", "answer",
"origin_kind", "leaf", "role", "unit_group", "answer_for", "verified")
def _pool_fields(sm: dict) -> dict:
pf = sm.get("pool_fields")
return {k: v for k, v in pf if isinstance(k, str)} if isinstance(pf, list) and all(
isinstance(x, (list, tuple)) and len(x) == 2 for x in pf) else {}
class Layout:
"""Plans where each selected row goes under --out and writes _meta/manifest.jsonl and _meta/sizes.tsv. cat:
{source: {"domain": [codes], "spdx": str}} from the catalog; entries: {source: its meta/sources.json entry}."""
def __init__(self, out: Path, cat: dict, entries: dict):
self.out, self.cat, self.entries = Path(out), cat, entries
self.taken: dict = {}
self.lines: list = []
def leaf(self, row: dict) -> str:
sm = row.get("source_meta") if isinstance(row.get("source_meta"), dict) else {}
codes = (self.cat.get(row.get("source")) or {}).get("domain") or []
return str(sm.get("pool_leaf") or (codes[0] if codes else "unclassified"))
def domain_dir(self, row: dict) -> str:
sm = row.get("source_meta") if isinstance(row.get("source_meta"), dict) else {}
return str(sm.get("pool_domain") or self.leaf(row).split(".")[0])
def parts(self, row: dict) -> list:
"""The row's path under --out as parts: [<domain>, <source>, ...] or [answer, <source>, ...]."""
sm = row.get("source_meta") if isinstance(row.get("source_meta"), dict) else {}
src = str(row.get("source"))
role = sm.get("role") or "unit"
pp = sm.get("pool_path")
if isinstance(pp, str) and pp:
rel = [x for x in pp.split("/") if x]
if role == "answer" and rel[:1] == [ANSWER_DIR]:
rel = rel[1:]
else:
pid = row.get("pointer_id")
tail = pid.split(":", 2)[2] if isinstance(pid, str) and pid.count(":") >= 2 else _pid_fallback(row)
rel = [str(row.get("collection") or "")] + tail.split("/")
head = [ANSWER_DIR, src] if role == "answer" else [self.domain_dir(row), src]
out = head + rel
key = "/".join(out)
if key in self.taken and self.taken[key] != row.get("pointer_id"):
out = head + [str(row.get("collection") or "_")] + rel # another row already has this path
self.taken["/".join(out)] = row.get("pointer_id")
return out
def line(self, row: dict, res: dict) -> dict:
"""The manifest.jsonl line of a fetched row (res: its fetch result with status ok)."""
sm = row.get("source_meta") if isinstance(row.get("source_meta"), dict) else {}
pf = _pool_fields(sm)
e = self.entries.get(row.get("source")) or {}
lic = e.get("license") if isinstance(e.get("license"), dict) else {}
lo = row.get("license_override") if isinstance(row.get("license_override"), dict) else {}
p = Path(res["path"])
rel = p.resolve().relative_to(self.out.resolve()).as_posix()
want = str((row.get("hashes") or {}).get("sha256") or "").lower()
return {"source": row.get("source"), "path": rel, "url": res.get("url") or res.get("fetched_from"),
"sha256": res.get("sha256"), "bytes": res.get("bytes"),
"spdx": pf.get("spdx") or lo.get("spdx") or e.get("license_spdx")
or (self.cat.get(row.get("source")) or {}).get("spdx"),
"licence_url": pf.get("licence_url") or lic.get("url"), "publisher": pf.get("publisher"),
"retrieved": res.get("retrieved") or utc_today(), "answer": None,
"origin_kind": sm.get("origin_kind") or pf.get("origin_kind"), "leaf": self.leaf(row),
"role": sm.get("role") or "unit", "unit_group": sm.get("unit_group"), "answer_for": sm.get("answer_for"),
"verified": bool(res.get("unit_verified")) if res.get("extracted") else
bool(want) and res.get("sha256") == want and not res.get("differs_from_index"),
"_origin": (sm.get("pool_source") or {}).get("origin") if isinstance(sm.get("pool_source"), dict)
else None, "_leaf_source": (sm.get("pool_source") or {}).get("leaf")
if isinstance(sm.get("pool_source"), dict) else None}
def write(self) -> dict:
"""Merge this run's lines into _meta/manifest.jsonl (by path; lines of earlier runs stay) and rewrite
_meta/sizes.tsv from it. -> {files, sources}."""
meta = self.out / META_OUT
meta.mkdir(parents=True, exist_ok=True)
mp = meta / "manifest.jsonl"
old = {}
if mp.is_file():
for ln in mp.read_text(encoding="utf-8").splitlines():
try:
x = json.loads(ln)
except ValueError:
continue
if isinstance(x, dict) and x.get("path") and (self.out / x["path"]).is_file():
old[x["path"]] = x
extra = {}
for x in self.lines:
extra[x["path"]] = (x.pop("_origin"), x.pop("_leaf_source"))
old[x["path"]] = x
answers: dict = {}
for x in old.values():
if x.get("role") == "answer" and x.get("unit_group"):
answers.setdefault((x["source"], x["unit_group"]), []).append(x["path"])
for x in old.values():
if x.get("role") == "unit":
a = sorted(answers.get((x["source"], x.get("unit_group")), []))
x["answer"] = a[0] if len(a) == 1 else (a or None)
lines = [{k: x.get(k) for k in LAYOUT_FIELDS} for _, x in sorted(old.items())]
mp.write_bytes("".join(json.dumps(x, ensure_ascii=False) + "\n" for x in lines).encode("utf-8"))
by: dict = {}
for x in lines:
s = by.setdefault(x["source"], {"leaf": None, "origin": None, "bytes": 0, "spdx": None})
o, lf = extra.get(x["path"], (None, None))
s["bytes"] += int(x.get("bytes") or 0)
if x["role"] != "companion":
s["leaf"] = s["leaf"] or lf or x.get("leaf")
s["spdx"] = s["spdx"] or x.get("spdx")
if s["origin"] is None:
u = urllib.parse.urlsplit(str(o or x.get("url") or ""))
s["origin"] = o or (f"{u.scheme}://{u.netloc}" if u.netloc else None)
sp = meta / "sizes.tsv"
rows = []
if sp.is_file(): # sources of earlier runs keep their line unless this manifest recounts them
for ln in sp.read_text(encoding="utf-8").splitlines():
c = ln.split("\t")
if len(c) == 5 and c[1] not in by:
rows.append(c)
rows += [[str(v["leaf"] or ""), s, str(v["origin"] or ""), str(v["bytes"]), str(v["spdx"] or "")]
for s, v in by.items()]
sp.write_bytes("".join("\t".join(r) + "\n" for r in sorted(rows, key=lambda r: (r[0], r[1]))).encode("utf-8"))
return {"files": len(lines), "sources": len(rows)}
# ---------- command line ----------
def _key(row: dict) -> dict:
rng = row.get("range") if isinstance(row.get("range"), dict) else {}
return {"source": row.get("source"), "uri": row.get("uri"), "range_offset": rng.get("offset"),
"member_path": row.get("member_path")}
def resolve_repo_uri(row: dict, root: str, public: str | None = None) -> dict:
"""A row whose uri names a file in the index repository (REPO_FILES, no scheme) -> the same row with uri read
from root: hf://datasets/<repo>@<commit>/<path> on the Hub (fetched from, and recorded as, its absolute URL
https://huggingface.co/datasets/<repo>/resolve/<commit>/<path>), root/<path> for a URL prefix. For a local --data
copy the uri stays as it is and _local_file names the file inside root (read by local_file_opener; the file
must lie inside root); public (hf://datasets/<repo>[@<revision>]) gives _public_url, the absolute URL the
manifest records for it instead of the local path. The original value stays in repo_uri. Other rows come back
unchanged."""
uri = row.get("uri")
if not isinstance(uri, str) or not uri.startswith(REPO_FILES) or "://" in uri:
return row
parts = uri.split("/")
if any(p in ("", ".", "..") for p in parts) or "\\" in uri:
return row
if is_remote(root):
return {**row, "uri": f"{root}/{uri}", "repo_uri": uri}
top = Path(root).resolve()
path = top.joinpath(*parts).resolve()
if top not in path.parents:
return row
out = {**row, "_local_file": str(path), "repo_uri": uri}
if public:
out["_public_url"] = to_http(f"{public}/{uri}")
return out
def campaign_fields(row: dict) -> dict:
"""The CAMPAIGN_KEYS of the row's source_meta, for the manifest line."""
sm = row.get("source_meta") if isinstance(row.get("source_meta"), dict) else {}
return {k: sm[k] for k in CAMPAIGN_KEYS if k in sm}
def selected_rows(con, sql: str, specs: dict):
cur = con.execute(sql)
names = [d[0] for d in cur.description]
while True:
batch = cur.fetchmany(1000)
if not batch:
break
for t in batch:
col = dict(zip(names, t))
spec = specs.get(col["source"])
if spec is None:
yield {**_key({"source": col["source"], "uri": col["uri"], "member_path": col.get("member_path")}),
"status": "unsupported", "reason": "source missing from meta/sources.json"}, None
continue
row = {k: v for k, v in restore(col, spec).items() if not str(k).startswith("_")}
row["_size_cap"] = col.get("size_cap_bytes")
row["_batch_cap"] = col.get("batch_cap_bytes")
row["_nk_conflict"] = bool(col.get("natural_key_conflict"))
if "dry_fate" in col:
row["_fate"], row["_fail"] = col["dry_fate"], col.get("dry_fail")
yield None, row
def parse_args(argv=None):
ap = argparse.ArgumentParser(description=__doc__.split("\n\n")[0], formatter_class=argparse.RawTextHelpFormatter)
ap.add_argument("--repo", default=DEFAULT_REPO, help=f"dataset repository (default {DEFAULT_REPO})")
ap.add_argument("--data", help="read the tables from this local copy or URL prefix instead of the repository")
ap.add_argument("--revision",
help="read the repository at this commit (40 hex characters) or tag (pinned to the commit the\n"
"tag points to); default: the commit the main branch points to when the script starts.\n"
"Record it to repeat a selection later. With a local --data copy it only records the\n"
"commit that copy holds (not checked)")
ap.add_argument("--tag", action="append",
help="collection tag campaign:<name> (repeatable; see meta/tags.parquet)")
ap.add_argument("--domain", action="append",
help="domain code from meta/catalog.parquet (repeatable, any of them): D1 to D10 or a leaf\n"
"such as D1.6; a top-level code also matches its leaves (D3 matches D3.5), a leaf only\n"
"itself; multi and unclassified match only themselves. Codes: catalog/domains.yaml of\n"
"the pipeline repository, or the README of the index")
ap.add_argument("--form", action="append",
help="form id from meta/catalog.parquet, such as test-suites (repeatable, any of them);\n"
"with --domain a source must match both")
ap.add_argument("--ext", action="append", help="file extension without the dot (repeatable)")
ap.add_argument("--source", action="append", help="source name (repeatable)")
ap.add_argument("--selection", metavar="FILE",
help="a selection file saved by the data page (JSON: sources, revision, filters): its sources\n"
"are read as --source and its revision as --revision")
ap.add_argument("--tier", type=lambda s: [x for x in s.split(",") if x],
help="training license tiers, comma separated (default: all tiers)")
ap.add_argument("--min-size", type=int, help="smallest size in bytes")
ap.add_argument("--max-size", type=int,
help="size cap in bytes used when fetching, for every row (replaces the overall cap); it\n"
"does not remove rows from the selection")
ap.add_argument("--max-size-filter", type=int,
help="leave out the rows whose published size is larger than this many bytes (rows of\n"
"unknown size stay; --max-size or the overall cap still bound what is downloaded)")
ap.add_argument("--where", help="extra SQL condition on the row table p (and the batch table b)")
ap.add_argument("--limit", type=int, help="at most this many units over the whole selection (a fixed order)")
ap.add_argument("--sample", type=int,
help="this many units per selected source, the same ones every run (a fixed order); with\n"
"their answers and the source's companion files")
ap.add_argument("--all", action="store_true",
help="turn the default profile off: apply only the conditions given here")
ap.add_argument("--no-default-filter", dest="all", action="store_true", help=argparse.SUPPRESS)
ap.add_argument("--keep-duplicates", action="store_true", help="profile: keep duplicate copies")
ap.add_argument("--allow-benchmark", action="store_true",
help="profile: keep rows that matched a benchmark (copies of benchmark data, collections\n"
"awaiting a ruling) and rows not compared with the benchmark list yet")
ap.add_argument("--allow-not-compared", action="store_true",
help="profile: keep rows whose data file was not compared with the benchmark list yet (rows\n"
"that matched a benchmark stay out)")
ap.add_argument("--any-license", "--any-licence", dest="any_license", action="store_true",
help="profile: keep rows whose license does not let the files be shipped")
ap.add_argument("--any-language", action="store_true", help="profile: keep rows recorded in a language other "
"than English")
ap.add_argument("--allow-personal-data", action="store_true",
help="profile: keep rows of sources or rows marked as carrying personal data")
ap.add_argument("--any-size", action="store_true",
help=f"profile: keep rows above {PROFILE_MAX_BYTES:,} bytes (the overall cap still bounds the\n"
f"download)")
ap.add_argument("--out", default="fetched", help="directory for the files and _meta/ (default ./fetched)")
ap.add_argument("--dry-run", action="store_true",
help="print the counts and write _meta/fetch_manifest.jsonl with one line per file of the\n"
"selection (status selected, removed or not_taken), download nothing")
ap.add_argument("--local-root", action="append",
help=f"reuse a file under this directory whose size and hashes match a row instead of downloading\n"
f"it (repeatable; default: the {LOCAL_ROOTS_ENV} variable, directories separated by\n"
f"{os.pathsep!r}); each manifest line records obtained: reused, staged or fetched")
ap.add_argument("--staging",
help=f"directory where an outside fetch placed files; checked like a local root, recorded as\n"
f"staged (default: the {STAGING_ENV} variable)")
ap.add_argument("--print-sql", action="store_true", help="print the query and exit")
ap.add_argument("--memory-limit",
help="DuckDB memory limit, for example 8GB (default: the smaller of 4GB and a quarter of the\n"
"memory available, the cgroup limit when lower); what does not fit is written to the\n"
"spill directory")
ap.add_argument("--threads", type=int,
help="DuckDB threads (default: one per GB of the memory limit, at most the number of CPUs)")
ap.add_argument("--temp-dir", help=f"DuckDB spill directory (default: {SPILL_DIR} under --out, removed at the end)")
ap.add_argument("--verify-retries", type=int, default=VERIFY_RETRIES,
help=f"download a file again this many times when its size or hash does not match its row\n"
f"(default {VERIFY_RETRIES}; waits 2, 4, ... seconds in between)")
ap.add_argument("--decompress", action="store_true",
help="after a verified download, decompress .gz, .bz2 and .zst files (within the row's cap)\n"
"and delete the compressed file; .zst needs pip install zstandard")
ap.add_argument("--check-content", action="store_true",
help="after a verified download, flag scanned PDFs, error pages saved as files and extensions\n"
"that do not match the content (manifest field content_check); needs the file command\n"
"and poppler-utils (pdffonts, pdftotext), a missing tool skips its check")
ap.add_argument("--proxy",
help="proxy for every request: http://host:port, or socks5h://host:port\n"
"(a proxy login goes before the host as user:password followed by an at sign).\n"
"(socks needs pip install PySocks; DuckDB cannot use a socks proxy, see --data).\n"
"Default: HTTPS_PROXY, HTTP_PROXY or ALL_PROXY from the environment")
ap.add_argument("--contact",
help="your e-mail or URL, sent in the User-Agent so a site can reach you instead of blocking")
ap.add_argument("--quiet", action="store_true", help="no per-row progress lines on stderr")
ap.add_argument("--timeout", type=float, default=120)
a = ap.parse_args(argv)
if a.contact is not None and not re.fullmatch(r"[^\x00-\x1f()\x7f]{1,200}", a.contact):
ap.error("--contact takes one line of at most 200 characters without parentheses")
if a.verify_retries < 0:
ap.error("--verify-retries must be 0 or more")
for k in ("limit", "sample"):
if getattr(a, k) is not None and getattr(a, k) < 1:
ap.error(f"--{k} must be 1 or more")
if a.threads is not None and a.threads < 1:
ap.error("--threads must be 1 or more")
for t in a.tier or ():
if t not in TIERS:
ap.error(f"unknown tier {t}; use {', '.join(TIERS)}")
for d in a.domain or ():
if not DOMAIN_RE.fullmatch(d):
ap.error(f"--domain {d!r} is not a domain code; use D<n> or D<n>.<m> (such as D3 or D1.6), multi or "
f"unclassified")
for f in a.form or ():
if not FORM_RE.fullmatch(f):
ap.error(f"--form {f!r} is not a form id; use lower-case words joined by '-' (such as test-suites)")
if a.selection is not None:
sel = json.loads(Path(a.selection).read_text(encoding="utf-8"))
# a file without sources would select the whole index
if not sel.get("sources"):
ap.error(f"--selection {a.selection} lists no source")
a.source = [*(a.source or ()), *sel["sources"]]
if a.revision is None:
a.revision = sel.get("revision")
elif sel.get("revision") and a.revision.lower() != str(sel["revision"]).lower():
ap.error(f"--revision {a.revision} differs from the revision of --selection {a.selection} ({sel['revision']})")
if a.revision is not None:
if re.fullmatch(r"[0-9A-Fa-f]{40}", a.revision):
a.revision = a.revision.lower()
elif not REF_RE.fullmatch(a.revision) or ".." in a.revision:
ap.error("--revision takes a full commit id (40 hex characters) or a tag name (letters, digits, . _ -)")
if revision_of(_root(a)) is not None:
ap.error("--data already names a revision (@...); drop --revision or the @ part")
return a
def revision_of(root: str) -> str | None:
"""The revision an hf://datasets/<owner>/<name>@<revision>/... root names, else None."""
if not root.startswith(HF_DATASETS):
return None
parts = root[len(HF_DATASETS):].split("/", 2)
name = parts[1] if len(parts) > 1 else ""
return (name.split("@", 1)[1] or None) if "@" in name else None
class IndexReadError(Exception):
"""The index tables could not be read or queried (the message says what to check)."""
def _index_error(e: BaseException, root: str) -> IndexReadError:
first = (str(e).strip().splitlines() or [""])[0][:400]
return IndexReadError(f"could not read the index at {root}: {type(e).__name__}: {first}\n"
f"check the --repo/--data path, your network or proxy (--proxy), and that --where, "
f"--tag and --source are spelled right")
def _progress(n: int, res: dict) -> None:
what = res.get("pointer_id") or res.get("uri") or ""
extra = res.get("reason") or (f"{res['bytes']} bytes" if res.get("bytes") is not None else "")
print(f"[{n}] {res.get('status')} {what}" + (f": {str(extra)[:200]}" if extra else ""), file=sys.stderr,
flush=True)
def load_entries(con, root: str, names=None) -> dict:
"""{source: its meta/sources.json entry} (the layout rebuilds rows; the license gives licence_url), only names
when given."""
text = con.execute(f"SELECT content FROM read_text({sql_str(root + '/meta/sources.json')})").fetchone()[0]
want = None if names is None else set(names)
return {s["source"]: s for s in json.loads(text)["sources"] if want is None or s["source"] in want}
def _n(n: int, what: str) -> str:
return f"{n:,} {what}{'' if n == 1 else 's'}"
def _keeps(n: str) -> str:
return "--" + RELAX[n].replace("_", "-")
def report_counts(con, relaxed, given: str) -> dict:
"""Prints on stderr how many units and files the selection had and how many units each criterion of the profile
removed, with its reason (a unit is counted under the first criterion it fails); a selection that ends empty
says why. The files are every file of the selection's units and the companion files of its sources (a dry run
writes one manifest line for each). -> the counts."""
rank = {i + 1: n for i, n in enumerate(CRITERIA)}
groups = con.execute("SELECT fail, count(*), sum(files) FROM fetch_units GROUP BY fail").fetchall()
units = sum(int(n) for _, n, _ in groups)
files = sum(int(f or 0) for _, _, f in groups)
nsrc = con.execute("SELECT count(DISTINCT source) FROM fetch_units").fetchone()[0]
comp = con.execute("SELECT count(*) FROM fetch_cand WHERE unit IS NULL").fetchone()[0]
removed = {rank[f]: int(n) for f, n, _ in groups if f is not None}
kept = sum(int(n) for f, n, _ in groups if f is None)
on = [n for n in CRITERIA if n not in set(relaxed)]
say = lambda s: print(s, file=sys.stderr, flush=True) # noqa: E731
say(f"selection{given}: {_n(units, 'unit')} and {_n(files + comp, 'file')} in {_n(nsrc, 'source')}"
+ (f" ({_n(comp, 'companion file')} among the files)" if comp else ""))
if not on:
say("profile: off (--all)")
for n in on:
say(f" removed by {n} ({REASONS[n]}): {removed.get(n, 0):,}"
+ (f" ({_keeps(n)} keeps them)" if removed.get(n) else ""))
if on and len(on) < len(CRITERIA):
say(" not applied: " + ", ".join(n for n in CRITERIA if n not in on))
say(f" kept: {_n(kept, 'unit')}")
out = {"units": units, "files": files + comp, "unit_files": files, "companions": comp, "sources": nsrc,
"removed": {n: removed.get(n, 0) for n in on}, "reasons": {n: REASONS[n] for n in on},
"options": {n: _keeps(n) for n in on}, "kept": kept, "profile": on}
if units == 0:
say(f"nothing selected: no row matches the conditions given{given}")
out["emptied_by"] = "conditions"
elif kept == 0:
last = [n for n in on if removed.get(n)][-1]
say(f"nothing selected: the {last} criterion ({REASONS[last]}) removed the last "
f"{_n(removed[last], 'unit')}; {_keeps(last)} keeps them")
out["emptied_by"] = last
return out
def _given(args) -> str:
parts = [f"--source {s}" for s in args.source or ()] + [f"--domain {d}" for d in args.domain or ()]
parts += [f"--form {f}" for f in args.form or ()] + [f"--tag {t}" for t in args.tag or ()]
parts += [f"--ext {e}" for e in args.ext or ()]
for k in ("tier", "min_size", "max_size_filter", "where"):
v = getattr(args, k)
if v is not None:
parts.append(f"--{k.replace('_', '-')} {','.join(v) if isinstance(v, list) else v}")
return f" ({' '.join(parts)})" if parts else ""
def dry_reason(row: dict, args) -> dict:
"""The manifest fields that say why a row of a dry run is not fetched: removed_by (the criterion of the profile
that its unit, or the companion file itself, fails), reason and kept_with (the option that keeps it); for a row
left out otherwise (not_taken) the reason."""
fate = row.get("_fate")
if fate == "removed" and row.get("_fail") is not None:
n = CRITERIA[int(row["_fail"]) - 1]
return {"removed_by": n, "reason": REASONS[n], "kept_with": _keeps(n)}
if fate == "not_taken":
sm = row.get("source_meta") if isinstance(row.get("source_meta"), dict) else {}
if sm.get("role") == "companion":
return {"reason": "companion file of a source none of whose units is taken"}
how = [f"--sample {args.sample}" if args.sample else "", f"--limit {args.limit}" if args.limit else ""]
return {"reason": "left out by " + (" and ".join(h for h in how if h) or "the selection")}
return {}
def main(argv=None) -> int:
t0 = time.monotonic()
args = parse_args(argv)
local = LocalFiles.from_settings(args.local_root, args.staging)
proxy = args.proxy or env_proxy()
set_network(proxy, args.contact)
opener = open_url
root = _root(args)
domains, forms, tags = args.domain or (), args.form or (), args.tag or ()
relaxed = CRITERIA if args.all else tuple(n for n in CRITERIA if getattr(args, RELAX[n]) or
(n == "not compared" and args.allow_benchmark))
profile = profile_conditions(relaxed)
size_cap = None if "size" in relaxed else PROFILE_MAX_BYTES
conds = build_where(tags=tags, exts=args.ext or (), tiers=args.tier, min_size=args.min_size, where=args.where,
max_size_filter=args.max_size_filter)
tag_rev = args.revision if args.revision and not re.fullmatch(r"[0-9a-f]{40}", args.revision) else None
if args.revision and not tag_rev:
root = pin_root(root, revision=lambda repo: args.revision)
if args.print_sql:
if tag_rev:
root = pin_root(root, revision=lambda repo: tag_rev, ref_ok=True)
sel = build_where(sources=args.source or (), domains=domains, forms=forms)
print(";\n".join(views_sql(root, sources=args.source or (), domains=domains, forms=forms)) + ";")
print(";\n".join([*cand_steps(sel + conds, profile, args.max_size, size_cap),
*take_steps(args.limit, args.sample), part_query()]) + ";")
return 0
if tag_rev and root.startswith(HF_DATASETS):
def _tag(repo):
try:
return repo_revision(repo, ref=tag_rev)
except Exception as e: # noqa: BLE001 pin the tag name itself
_stderr(f"could not read the commit of tag {tag_rev} ({type(e).__name__}: {e}); reading the tag "
f"by name")
return tag_rev
root = pin_root(root, revision=_tag, ref_ok=True)
root = pin_root(root)
hub = root.startswith(HF_DATASETS)
# a local copy (or another URL prefix) is not resolved: a given --revision is only recorded
rev = revision_of(root) if hub else args.revision
if rev and hub:
print(f"reading {root} (commit {rev}); pass --revision {rev} to select the same rows later", file=sys.stderr)
if is_remote(root):
_SEVENZIP["url"] = to_http(f"{root}/tools/sevenzip.py")
_TRANSFORM["src"] = to_http(f"{root}/tools/transform.py")
elif Path(root, "tools", "transform.py").is_file():
_TRANSFORM["src"] = str(Path(root, "tools", "transform.py"))
out = Path(args.out)
meta = out / META_OUT
meta.mkdir(parents=True, exist_ok=True)
spill = Path(args.temp_dir) if args.temp_dir else out / SPILL_DIR
own_spill = not args.temp_dir
limit = args.memory_limit or default_memory_limit()
try:
con = connect(limit, str(spill), remote=is_remote(root), proxy=proxy)
except ValueError as e:
raise IndexReadError(str(e)) from None
threads = args.threads or default_threads(limit)
if threads and not args.threads and is_remote(root):
threads = min(threads, REMOTE_THREADS)
if threads:
con.execute(f"SET threads = {int(threads)}")
counts: dict = {}
auth_skipped: dict = {}
selection: dict = {}
run_id = utc_now().strftime("%Y%m%dT%H%M%S.%fZ")
n_row = 0
layout = None
incomplete: dict = {}
given = _given(args)
try:
queries, specs, entries, cat = [], {}, {}, {}
try:
has = catalog_table(con, root)
for flag, col in ((forms, "form"), (domains, "domain")):
if flag and not has[col]:
raise IndexReadError(
f"{CATALOG} at {root} has no column {col}: this revision of the index is older than the "
f"columns domain and form, so --domain and --form cannot be used with it; read a newer "
f"revision (a later --revision, or none for the current one)")
check_names(con, sources=args.source or (), domains=domains, forms=forms, has_form=has["form"],
where=f" at commit {rev}" if rev else "")
everything = not (args.source or domains or forms or tags)
sources = resolve_sources(con, root, domains=domains, forms=forms, sources=args.source or ())
batches = None
if tags and sources:
batches = tag_batches(con, root, tags, sources if args.source or domains or forms else ())
everything = False
cat = {str(s): {"domain": list(d or []), "spdx": sp, "files": f}
for s, d, sp, f in con.execute("SELECT source, domain, spdx, files FROM s").fetchall()}
if not sources or batches == []:
why = "no source matches" if not sources else "no batch carries the tags"
print(f"selection{given}: {why}; nothing selected", file=sys.stderr)
selection = {"units": 0, "files": 0, "emptied_by": "conditions"}
else:
names = sorted({s for s, _ in batches}) if batches else sources
rows = sum(int((cat.get(s) or {}).get("files") or 0) for s in names)
jobs = table_steps(root, sources, batches=batches, tags=tags, everything=everything,
local_rows=rows <= LOCAL_ROWS)
jobs["specs"] = lambda cur: load_entries(cur, root, None if everything else names)
entries = read_parallel(con, jobs)["specs"]
complete_rows(con)
specs = {s: e["layout"] for s, e in entries.items()}
for s in cand_steps(conds, profile, args.max_size, size_cap):
con.execute(s)
selection = report_counts(con, relaxed, given)
if selection["kept"] or (args.dry_run and selection["files"]):
for s in take_steps(args.limit, args.sample, every=args.dry_run):
con.execute(s)
tu, tf = con.execute("SELECT (SELECT count(*) FROM fetch_take), (SELECT count(*) FROM fetch_rows"
+ (" WHERE dry_fate = 'selected'" if args.dry_run else "") + ")").fetchone()
selection.update(taken_units=int(tu), taken_files=int(tf))
how = (f" (--sample {args.sample} per source)" if args.sample else "") + \
(f" (--limit {args.limit})" if args.limit else "")
print(f"{'selected' if args.dry_run else 'fetching'}: {_n(tu, 'unit')}{how}, "
f"{_n(tf, 'file')} with their answers and companion files", file=sys.stderr, flush=True)
if args.dry_run:
print(f"dry run: {META_OUT}/{MANIFEST} gets one line for each of the "
f"{_n(selection['files'], 'file')} of the selection, with status selected, removed "
f"(removed_by names the criterion) or not_taken", file=sys.stderr, flush=True)
queries = part_queries(con, limit)
except UnknownName:
raise
except IndexReadError:
raise
except (urllib.error.URLError, OSError, ValueError, RuntimeError) as e:
raise _index_error(e, root) from e
except Exception as e: # noqa: BLE001 duckdb.Error and its subclasses
if type(e).__module__.split(".")[0] in ("duckdb", "_duckdb"):
raise _index_error(e, root) from e
raise
layout = Layout(out, cat, entries)
# a local --data copy: rows stored in the index repository are recorded with their public URL at the revision
# the copy holds (--revision), not with a local path
public = None
if not is_remote(root):
public = f"{HF_DATASETS}{args.repo}" + (f"@{args.revision}" if args.revision else "")
warned = False
with open(meta / MANIFEST, "a", encoding="utf-8") as man:
for early, row in (r for q in queries for r in selected_rows(con, q, specs)):
if row is not None:
row = resolve_repo_uri(row, root, public)
row["_dest_parts"] = layout.parts(row)
if row.get("_public_url") and not args.revision and not warned:
_stderr(f"files of the index repository read from the local copy are recorded with their URL "
f"on the main branch; pass --revision <the commit the copy holds> to record that one")
warned = True
if early is not None:
res = early
elif args.dry_run:
res = {**_key(row), "pointer_id": row.get("pointer_id"), "status": row.get("_fate") or "selected",
"method": method_of(row), "size_bytes": row.get("size_bytes"),
"size_cap_bytes": row.get("_size_cap")}
res.update(dry_reason(row, args))
else:
res = {**_key(row), **fetch_unit(row, out, timeout=args.timeout, opener=opener,
verify_retries=args.verify_retries, skip_present=True,
local=local)}
if args.decompress and res.get("status") == "ok" and res.get("path"):
d = decompress_file(Path(res["path"]), row, cap_of(row))
if d is not None:
res["decompress"] = d
if d["status"] == "ok":
res["path"] = d["path"]
if args.check_content and res.get("status") == "ok" and res.get("path"):
p = Path(res["path"])
ext = None if res.get("decompress", {}).get("status") == "ok" else row.get("ext")
try:
res["content_check"] = check_content(p, ext)
except OSError as e:
res["content_check"] = {"skipped": {"all": f"could not read the file: {e}"}}
if row is not None:
res.update(campaign_fields(row))
res["layout_path"] = "/".join(row["_dest_parts"])
if row.get("repo_uri"):
res["uri"] = row["repo_uri"]
if row.get("_public_url") and res.get("url") == row.get("_local_file"):
res["url"] = row["_public_url"]
res["read_from"] = "local copy"
if res.get("status") == "ok" and res.get("path"):
layout.lines.append(layout.line(row, res))
sm = row.get("source_meta") if isinstance(row.get("source_meta"), dict) else {}
if sm.get("unit_group") and res.get("status") not in ("ok", "selected") and not args.dry_run:
incomplete.setdefault((row.get("source"), sm["unit_group"]), res.get("status"))
if row is not None and row.get("size_bytes") is None:
res["size_unknown"] = True
if row is not None and row.get("_nk_conflict"):
res["natural_key_conflict"] = True
if hub or rev:
res["revision"] = rev
if res.get("status") == "skipped" and res.get("needs_auth") is not None:
k = auth_key(res["needs_auth"])
auth_skipped[k] = auth_skipped.get(k, 0) + 1
counts[res["status"]] = counts.get(res["status"], 0) + 1
res["run_id"] = run_id
man.write(json.dumps(res, ensure_ascii=False, sort_keys=True) + "\n")
man.flush()
n_row += 1
if not args.quiet:
_progress(n_row, res)
finally:
clear_package_cache()
_SETUP.pop(id(con), None)
con.close()
if own_spill:
shutil.rmtree(spill, ignore_errors=True)
lay = layout.write() if layout is not None and not args.dry_run else None
if incomplete:
print(f"incomplete: {_n(len(incomplete), 'unit')} miss a file (the files fetched are kept; "
f"_meta/fetch_manifest.jsonl says why): " + "; ".join(f"{s} {u} ({st})" for (s, u), st in
list(incomplete.items())[:10]), file=sys.stderr)
summary = {"manifest": str(meta / MANIFEST), "counts": counts, "needs_auth_skipped": auth_skipped,
"run_id": run_id, "selection": selection, "seconds": round(time.monotonic() - t0, 1)}
if incomplete:
summary["incomplete_units"] = len(incomplete)
if lay is not None:
summary["layout"] = {"manifest": str(meta / "manifest.jsonl"), **lay}
if hub or rev:
summary["revision"] = rev
if local is not None:
summary["local_reuse"] = dict(local.counts)
print(local.summary(), file=sys.stderr)
run = {"repo": None if args.data else args.repo, "data": args.data, "revision": rev, "run_id": run_id,
"fetch_args": list(sys.argv[1:] if argv is None else argv), "counts": counts, "selection": selection,
"date": utc_today()}
(meta / RUN_FILE).write_text(json.dumps(run, ensure_ascii=False, sort_keys=True) + "\n", encoding="utf-8")
print(json.dumps(summary, sort_keys=True))
return 0 if not (counts.get("failed") or counts.get("unsafe_path")) else 1
def cli(argv=None) -> int:
"""main with the errors a user can fix printed as one message (exit code 2) instead of a traceback."""
try:
return main(argv)
except (IndexReadError, UnknownName) as e:
print(f"error: {e}", file=sys.stderr)
return 2
except KeyboardInterrupt:
print("stopped; the manifest keeps the rows finished so far, run again to resume", file=sys.stderr)
return 130
if __name__ == "__main__":
sys.exit(cli())
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