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# Patch-overlapping Python context after the fix

## `tenable_jira/cli.py` — `function:cli` (lines 51-231)

```python
def cli(configfile, observed_since, setup_only=False, troubleshoot=False):
    '''
    Tenable.io -> Jira Cloud Transformer & Ingester
    '''
    # Load the config, but ensure that any additional fields are additive to the
    # basic field set.
    config_from_file = yaml.safe_load(configfile)
    fields = config_from_file.pop('custom_fields', list())
    config = dict_merge(base_config(), config_from_file)
    config['fields'] = config['fields'] + fields

    if config['tenable'].get('tio_transform_tags'):
        attr_cache = config['tenable'].get('tio_asset_attr_cache', list())
        tag_attrs = config['tenable'].get('tio_transform_tags', list())
        config['tenable']['tio_asset_attr_cache'] = attr_cache + tag_attrs


    # Get the logging definition and define any defaults as need be.
    log = config.get('log', {})
    log_lvls = {'debug': 10, 'info': 20, 'warn': 30, 'error': 40}
    log['level'] = log_lvls[log.get('level', 'warn')]
    log['format'] = log.get('format',
        '%(asctime)-15s %(name)s %(levelname)s %(message)s')

    # Configure the root logging facility
    if troubleshoot:
        logging.basicConfig(
            level=logging.DEBUG,
            format=log['format'],
            filename='tenable_debug.log'
        )
    else:
        logging.basicConfig(**log)

    # Output some basic information detailing the config file used and the
    # python version & system arch.
    logging.info('Tenable2JiraCloud Version {}'.format(__version__))
    logging.info('Using configuration file {}'.format(configfile.name))
    uname = platform.uname()
    logging.info('Running on Python {} {}/{}'.format(
        '.'.join([str(i) for i in sys.version_info][0:3]),
        uname[0], uname[-2]))

    # instantiate the Jira object
    jira = Jira(
        'https://{}/rest/api/3'.format(config['jira']['address']),
        config['jira']['api_username'],
        config['jira']['api_token']
    )

    # Initiate the Tenable.io API model, the Ingester model, and start the
    # ingestion and data transformation.
    if config['tenable'].get('platform') == 'tenable.io':
        if not observed_since:
            # if no since field is supplied, then look in the config file to see
            # if an age was applied, if not, then use the default of 30 days.
            observed_since = arrow.now()\
                .shift(days=-config['tenable'].get('tio_age', 30))\
                .floor('day').timestamp()

        source = TenableIO(
            access_key=config['tenable'].get('access_key'),
            secret_key=config['tenable'].get('secret_key'),
            vendor='Tenable',
            product='JiraCloud',
            build=__version__
        )
        if int(source.session.details().get('permissions')) < 64:
            logging.error('API Keys tie to non-admin user.')
    elif config['tenable'].get('platform') == 'tenable.sc':
        source = TenableSC(
            config['tenable'].get('address'),
            port=int(config['tenable'].get('port', 443)),
            username=config['tenable'].get('username'),
            password=config['tenable'].get('password'),
            access_key=config['tenable'].get('access_key'),
            secret_key=config['tenable'].get('secret_key'),
            vendor='Tenable',
            product='JiraCloud',
            build=__version__
        )
    else:
        logging.error('No valid Tenable platform configuration defined.')
        exit(1)
    ingest = Tio2Jira(source, jira, config)

    if troubleshoot:
        # if the troubleshooting flag is set, then we will be collecting some
        # basic information and outputting it to the screen in a format that
        # Github issues would expect to format it all pretty.  This should help
        # reduce the amount of time that is spent with back-and-forth debugging.
        try:
            ingest.ingest(int(observed_since))
        except:
            logging.exception('Caught the following Exception')

        # Some basic redaction of sensitive data, such as API Keys, Usernames,
        # Passwords, and hostnames.
        addr = config_from_file['jira']['address']
        sc_addr = 'NOTHING_TO_SEE_HERE_AT_ALL'
        config_from_file['jira']['address'] = '<REDACTED>'
        config_from_file['jira']['api_token'] = '<REDACTED>'
        config_from_file['jira']['api_username'] = '<REDACTED>'
        config_from_file['project']['leadAccountId'] = '<REDACTED>'
        if config_from_file['tenable'].get('address'):
            sc_addr = config_from_file['tenable']['address']
            config_from_file['tenable']['address'] = '<REDACTED>'
        if config_from_file['tenable'].get('access_key'):
            config_from_file['tenable']['access_key'] = '<REDACTED>'
        if config_from_file['tenable'].get('secret_key'):
            config_from_file['tenable']['secret_key'] = '<REDACTED>'
        if config_from_file['tenable'].get('username'):
            config_from_file['tenable']['username'] = '<REDACTED>'
        if config_from_file['tenable'].get('password'):
            config_from_file['tenable']['password'] = '<REDACTED>'

        output = troubleshooting.format(
            configfile=yaml.dump(config_from_file, default_flow_style=False),
            logging=open('tenable_debug.log').read() \
                .replace(addr, '<JIRA_CLOUD_HOST>') \
                .replace(sc_addr, '<TENABLE_SC_HOST>'),
            issuetypes='\n'.join(
                [
                    '{id}: {name}'.format(**a)
                    for a in jira.issue_types.list()
                    if a.get('name').lower() in ['task', 'subtask', 'sub-task']
                ]
            )
        )
        print(output)
        print('\n'.join([
            '/-------------------------------NOTICE-----------------------------------\\',
            '| The output above is helpful for us to troubleshoot exactly what is     |',
            '| happening within the code and offer a diagnosis for how to correct.    |',
            '| Please note that while some basic redaction has already been performed |',
            '| that we ask you to review the information you\'re about to send and     |',
            '| ensure that nothing deemed sensitive is transmitted.                   |',
            '| ---------------------------------------------------------------------- |',
            '| -- Copy of output saved to "issue_debug.md"                            |',
            '\\------------------------------------------------------------------------/'
        ]))
        with open('issue_debug.md', 'w') as reportfile:
            print(output, file=reportfile)
        os.remove('tenable_debug.log')
    elif not setup_only:
        ingest.ingest(observed_since)

        # If we are expected to continually re-run the transformer, then we will
        # need to track the passage of time and run every X hours, where X is
        # defined by the user in the configuration.
        if config.get('service', {}).get('interval', 0) > 0:
            sleeper = int(config['service']['interval']) * 3600
            while True:
                last_run = int(time.time())
                logging.info(
                    'Sleeping for {}h'.format(sleeper/3600))
                time.sleep(sleeper)
                logging.info(
                    'Initiating ingest with observed_since={}'.format(last_run))
                ingest.ingest(last_run)
    elif setup_only:
        # In setup-only mode, the ingest will not run, and instead a config file
        # will be generated that will have all of the JIRA identifiers baked in
        # and will also inform the integration to ignore the screen builder.
        # When using this config, if there are any changes to the code, then
        # this config will need to be re-generated.
        config['screen']['no_create'] = True
        logging.info('Set to setup-only.  Will not run ingest.')
        logging.info('The following is the updated config file from the setup.')
        with open('generated_config.yaml', 'w') as outfile:
            outfile.write(yaml.dump(config, Dumper=yaml.Dumper))
        logging.info('Generated "generated_config.yaml" config file.')
        logging.info('This config file should be updated for every new version of this integration.')
```