release v1: 65 held-out tasks, 78 bootstrap records, r2e_local adapter, manifest ae94c40b

adapter/bootstrap_repo.py

@@ -0,0 +1,302 @@
+#!/usr/bin/env python3
+"""Prepare one corpus repository for LocalSandbox validation and write bootstrap.json.
+
+Replaces Repo2RLEnv's Docker-based `ensure_bootstrap` (bootstrap/runner.py line 471
+requires a daemon). Produces the same BootstrapResult shape that
+bootstrap/cache.py line 117 loads.
+
+Steps
+  1. sandbox checkout: `git clone --shared` of the local mirror, detached at the pinned SHA
+  2. `.venv` inside the checkout (excluded by the stage script's `git clean -e .venv`)
+  3. install: editable package + test extras + requirements files + pytest
+  4. verify: pytest collection, then a bounded full run
+  5. write bootstrap.json, requirements.lock, report.json
+
+Usage:
+  bootstrap_repo.py --repo owner/name --sha <pinned> [--python 3.12] [--extra-pkg X ...]
+                    [--install-cmd "<shell>"] [--test-cmd "python -m pytest"] [--suite-timeout 1200]
+Exit code 0 even when verification fails; read report.json / the printed summary.
+"""
+
+from __future__ import annotations
+
+import argparse
+import configparser
+import json
+import os
+import re
+import shutil
+import subprocess
+import sys
+import time
+import tomllib
+from pathlib import Path
+
+A = Path("/Users/beneecs/work/projects/openrsi/code/assets")
+REQ_FILE_CANDIDATES = [
+    "requirements-dev.txt",
+    "requirements_dev.txt",
+    "dev-requirements.txt",
+    "requirements-test.txt",
+    "requirements_test.txt",
+    "test-requirements.txt",
+    "test_requirements.txt",
+    "requirements/dev.txt",
+    "requirements/test.txt",
+    "requirements/tests.txt",
+    "requirements/testing.txt",
+    "tests/requirements.txt",
+]
+EXTRA_KEYS = ("test", "tests", "testing", "dev", "develop", "development")
+
+
+def sh(cmd: str, *, cwd: Path, env: dict, timeout: int) -> tuple[int, str, float]:
+    t = time.monotonic()
+    try:
+        p = subprocess.run(
+            ["bash", "-lc", cmd], cwd=str(cwd), env=env, capture_output=True, text=True,
+            errors="replace", timeout=timeout, check=False,
+        )
+        return p.returncode, (p.stdout + "\n--- stderr ---\n" + p.stderr), time.monotonic() - t
+    except subprocess.TimeoutExpired as exc:
+        out = exc.stdout.decode(errors="replace") if isinstance(exc.stdout, bytes) else (exc.stdout or "")
+        return 124, out + f"\n[timeout after {timeout}s]", time.monotonic() - t
+
+
+def requires_python(repo: Path) -> str | None:
+    py = repo / "pyproject.toml"
+    if py.exists():
+        try:
+            d = tomllib.loads(py.read_text())
+            rp = d.get("project", {}).get("requires-python")
+            if rp:
+                return rp
+            poetry = d.get("tool", {}).get("poetry", {}).get("dependencies", {}).get("python")
+            if poetry:
+                return str(poetry)
+        except Exception:
+            pass
+    cfg = repo / "setup.cfg"
+    if cfg.exists():
+        cp = configparser.ConfigParser()
+        try:
+            cp.read(cfg)
+            if cp.has_option("options", "python_requires"):
+                return cp.get("options", "python_requires")
+        except Exception:
+            pass
+    sp = repo / "setup.py"
+    if sp.exists():
+        m = re.search(r"python_requires\s*=\s*['\"]([^'\"]+)['\"]", sp.read_text(errors="replace"))
+        if m:
+            return m.group(1)
+    return None
+
+
+def choose_python(spec: str | None, preferred: str) -> str:
+    if not spec:
+        return preferred
+    try:
+        from packaging.specifiers import SpecifierSet
+        from packaging.version import Version
+    except ImportError:
+        return preferred
+    try:
+        ss = SpecifierSet(spec.replace("^", ">="))
+    except Exception:
+        return preferred
+    for cand in [preferred, "3.12", "3.11", "3.10", "3.9"]:
+        if ss.contains(Version(cand + ".0"), prereleases=True) or ss.contains(Version(cand + ".99")):
+            return cand
+    return preferred
+
+
+def discover_extras(repo: Path) -> tuple[list[str], list[str], list[str]]:
+    """Return (extras, requirement files, poetry dev packages)."""
+    extras: list[str] = []
+    poetry_dev: list[str] = []
+    py = repo / "pyproject.toml"
+    if py.exists():
+        try:
+            d = tomllib.loads(py.read_text())
+            opt = d.get("project", {}).get("optional-dependencies", {})
+            extras += [k for k in opt if k.lower() in EXTRA_KEYS]
+            groups = d.get("tool", {}).get("poetry", {}).get("group", {})
+            for g, body in groups.items():
+                if g.lower() in EXTRA_KEYS:
+                    poetry_dev += list(body.get("dependencies", {}).keys())
+            legacy = d.get("tool", {}).get("poetry", {}).get("dev-dependencies", {})
+            poetry_dev += list(legacy.keys())
+            pdm = d.get("tool", {}).get("pdm", {}).get("dev-dependencies", {})
+            for g, deps in pdm.items():
+                if g.lower() in EXTRA_KEYS:
+                    poetry_dev += [re.split(r"[<>=!~\[ ;]", x)[0] for x in deps]
+            dg = d.get("dependency-groups", {})
+            for g, deps in dg.items():
+                if g.lower() in EXTRA_KEYS:
+                    poetry_dev += [re.split(r"[<>=!~\[ ;]", x)[0] for x in deps if isinstance(x, str)]
+        except Exception:
+            pass
+    cfg = repo / "setup.cfg"
+    if cfg.exists():
+        cp = configparser.ConfigParser()
+        try:
+            cp.read(cfg)
+            if cp.has_section("options.extras_require"):
+                extras += [k for k in cp.options("options.extras_require") if k.lower() in EXTRA_KEYS]
+        except Exception:
+            pass
+    reqs = [r for r in REQ_FILE_CANDIDATES if (repo / r).exists()]
+    poetry_dev = [p for p in dict.fromkeys(poetry_dev) if p.lower() != "python"]
+    return list(dict.fromkeys(extras)), reqs, poetry_dev
+
+
+def main() -> int:
+    ap = argparse.ArgumentParser()
+    ap.add_argument("--repo", required=True)
+    ap.add_argument("--sha", required=True)
+    ap.add_argument("--python", default="3.12")
+    ap.add_argument("--extra-pkg", action="append", default=[])
+    ap.add_argument("--install-cmd", action="append", default=[], help="extra shell after base install")
+    ap.add_argument("--test-cmd", default="python -m pytest")
+    ap.add_argument("--suite-timeout", type=int, default=1200)
+    ap.add_argument("--skip-suite", action="store_true")
+    ap.add_argument("--force", action="store_true", help="recreate sandbox and venv")
+    args = ap.parse_args()
+
+    key = args.repo.replace("/", "__")
+    mirror = A / "repos" / key
+    sandbox = A / "sandboxes" / key
+    home = A / "sandboxes" / f".home-{key}"
+    bdir = A / "bootstrap" / key
+    bdir.mkdir(parents=True, exist_ok=True)
+    home.mkdir(parents=True, exist_ok=True)
+    log: list[dict] = []
+    t_start = time.monotonic()
+
+    if not (mirror / ".git").exists():
+        print(json.dumps({"repo": args.repo, "status": "no_mirror"}))
+        return 0
+
+    if args.force and sandbox.exists():
+        shutil.rmtree(sandbox)
+    if not (sandbox / ".git").exists():
+        sandbox.parent.mkdir(parents=True, exist_ok=True)
+        subprocess.run(["git", "clone", "-q", "--shared", "--no-checkout", f"file://{mirror}", str(sandbox)], check=True)
+    subprocess.run(["git", "-C", str(sandbox), "checkout", "-q", "--detach", args.sha], check=True)
+    subprocess.run(["git", "-C", str(sandbox), "clean", "-fdxq", "-e", ".venv"], check=False)
+
+    rp = requires_python(sandbox)
+    pyver = choose_python(rp, args.python)
+    venv = sandbox / ".venv"
+    env = {
+        "PATH": f"{venv}/bin:/opt/homebrew/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin",
+        "HOME": str(home), "VIRTUAL_ENV": str(venv), "LANG": "C.UTF-8", "LC_ALL": "C.UTF-8",
+        "PYTHONDONTWRITEBYTECODE": "1", "PIP_DISABLE_PIP_VERSION_CHECK": "1",
+        "UV_CACHE_DIR": str(A / ".uv-cache"), "UV_PYTHON_INSTALL_DIR": str(A / ".uv-python"),
+        "GIT_TERMINAL_PROMPT": "0",
+    }
+
+    def step(name: str, cmd: str, timeout: int = 900) -> int:
+        rc, out, dt = sh(cmd, cwd=sandbox, env=env, timeout=timeout)
+        log.append({"step": name, "cmd": cmd, "rc": rc, "sec": round(dt, 1), "tail": out[-3000:]})
+        return rc
+
+    if args.force or not (venv / "bin" / "python").exists():
+        if venv.exists():
+            shutil.rmtree(venv)
+        step("venv", f"uv venv -q --python {pyver} .venv", 300)
+
+    extras, reqs, poetry_dev = discover_extras(sandbox)
+    install_cmds: list[str] = []
+    pip = "uv pip install -q --python .venv/bin/python"
+    base = f"{pip} -e ."
+    if extras:
+        base = f"{pip} -e '.[{','.join(extras)}]'"
+    install_cmds.append(base)
+    for r in reqs:
+        install_cmds.append(f"{pip} -r {r}")
+    if poetry_dev:
+        install_cmds.append(f"{pip} {' '.join(repr(p) for p in poetry_dev)}")
+    install_cmds.append(f"{pip} pytest")
+    for extra in args.extra_pkg:
+        install_cmds.append(f"{pip} {extra}")
+    install_cmds += args.install_cmd
+
+    install_ok = True
+    for i, cmd in enumerate(install_cmds):
+        rc = step(f"install_{i}", cmd, 900)
+        if rc != 0 and cmd == base:
+            # Fall back to a plain editable install if extras are broken.
+            rc = step(f"install_{i}_fallback", f"{pip} -e .", 900)
+        if rc != 0 and cmd in (base, f"{pip} pytest"):
+            install_ok = False
+
+    collect_ok = step("collect", "python -m pytest -q --co -p no:cacheprovider 2>&1 | tail -5", 600) == 0
+    collected = None
+    if log[-1]["tail"]:
+        m = re.search(r"(\d+) tests? collected", log[-1]["tail"]) or re.search(r"(\d+)/(\d+) tests collected", log[-1]["tail"])
+        if m:
+            collected = int(m.group(1))
+
+    suite = {"ran": False}
+    if not args.skip_suite:
+        rc = step("suite", f"{args.test_cmd} -q -p no:cacheprovider -x --maxfail=50 2>&1 | tail -15", args.suite_timeout)
+        tail = log[-1]["tail"]
+        passed = re.search(r"(\d+) passed", tail)
+        failed = re.search(r"(\d+) failed", tail)
+        errors = re.search(r"(\d+) errors?", tail)
+        suite = {
+            "ran": True, "rc": rc, "sec": log[-1]["sec"],
+            "passed": int(passed.group(1)) if passed else 0,
+            "failed": int(failed.group(1)) if failed else 0,
+            "errors": int(errors.group(1)) if errors else 0,
+        }
+
+    step("freeze", "uv pip freeze --python .venv/bin/python > ../../bootstrap/" + key + "/requirements.lock", 120)
+    step("clean", "git reset -q --hard HEAD && git clean -fdxq -e .venv", 120)
+
+    pyv = subprocess.run([str(venv / "bin" / "python"), "-c", "import sys;print('.'.join(map(str,sys.version_info[:3])))"], capture_output=True, text=True).stdout.strip()
+    smoke = install_ok and collect_ok and (not suite.get("ran") or suite.get("passed", 0) > 0)
+    bootstrap = {
+        "image_digest": f"local-venv:{key}",
+        "image_tag": f"local/{key}",
+        "language": "python",
+        "repo": args.repo,
+        "ref": args.sha,
+        "rebuild_cmds": ["python -m pip install --no-deps --no-build-isolation -e ."],
+        "test_cmds": [args.test_cmd],
+        "smoke_passed": bool(smoke),
+        "iterations": 0,
+        "build_time_sec": round(time.monotonic() - t_start, 1),
+        "llm_provider": "none",
+        "llm_cost_estimate_usd": 0.0,
+        "dockerfile_reconstruction": "",
+        "transcript_path": None,
+        "pushed_to_registry": False,
+        "verify_passed": bool(smoke),
+        "verify_detail": f"python {pyv}; collected={collected}; suite={suite}",
+        "extra": {
+            "python_version": pyv,
+            "requires_python": rp,
+            "install_cmds": install_cmds,
+            "extras": extras,
+            "requirement_files": reqs,
+            "poetry_dev": poetry_dev,
+            "collected": collected,
+            "suite": suite,
+            "sandbox_layout": "checkout with .venv inside; LocalSandbox adapter",
+        },
+    }
+    (bdir / "bootstrap.json").write_text(json.dumps(bootstrap, indent=2))
+    (bdir / "report.json").write_text(json.dumps({"log": log}, indent=2))
+    print(json.dumps({
+        "repo": args.repo, "python": pyv, "install_ok": install_ok, "collect_ok": collect_ok,
+        "collected": collected, "suite": suite, "smoke_passed": smoke,
+        "extras": extras, "reqs": reqs, "poetry_dev": poetry_dev[:8],
+    }))
+    return 0
+
+
+if __name__ == "__main__":
+    sys.exit(main())

adapter/r2e_local/__init__.py

@@ -0,0 +1,5 @@
+"""Frozen single-container infrastructure for the commit_runtime task.
+
+No Docker anywhere. Validation sandboxes are subprocesses in a per-repository
+directory that carries a full-history clone and a Python virtual environment.
+"""

adapter/r2e_local/driver.py

@@ -0,0 +1,143 @@
+"""Run the native commit_runtime pipeline over one corpus repository, locally.
+
+This is the launch path the proposal cites (Repo2RLEnv cli.py line 355):
+    pipeline = pipeline_cls(gen_input, options, bootstrap=bootstrap_result)
+with the prebaked BootstrapResult and the LocalSandbox adapter installed.
+
+Usage:
+    python -m r2e_local.driver --repo owner/name --sha <pinned> \
+        --mirror assets/repos/owner__name --sandbox assets/sandboxes/owner__name \
+        --bootstrap assets/bootstrap/owner__name/bootstrap.json \
+        --out assets/heldout/owner__name \
+        [--llm gemini/gemini-2.5-flash --llm-key-env GEMINI_API_KEY] [--opt key=value ...]
+"""
+
+from __future__ import annotations
+
+import argparse
+import json
+import logging
+import sys
+import time
+from pathlib import Path
+
+from repo2rlenv.spec.input import (
+    AuthSpec,
+    BootstrapSpec,
+    GenerationInput,
+    LLMSpec,
+    OutputSpec,
+    PipelineName,
+    PipelineSpec,
+    RepoSpec,
+)
+from repo2rlenv.spec.options import CommitRuntimeOptions
+
+from .pipeline import LocalCommitRuntimePipeline, install_hooks, load_bootstrap
+
+
+def _parse_opts(items: list[str]) -> dict:
+    out: dict = {}
+    for item in items:
+        k, _, v = item.partition("=")
+        if v.lower() in ("true", "false"):
+            out[k] = v.lower() == "true"
+        elif v.isdigit():
+            out[k] = int(v)
+        else:
+            try:
+                out[k] = float(v)
+            except ValueError:
+                out[k] = v
+    return out
+
+
+def main(argv: list[str] | None = None) -> int:
+    ap = argparse.ArgumentParser()
+    ap.add_argument("--repo", required=True, help="owner/name")
+    ap.add_argument("--sha", required=True, help="pinned commit")
+    ap.add_argument("--mirror", required=True, type=Path)
+    ap.add_argument("--sandbox", required=True, type=Path)
+    ap.add_argument("--bootstrap", required=True, type=Path)
+    ap.add_argument("--out", required=True, type=Path)
+    ap.add_argument("--llm", default=None, help="provider/model; omit to disable synthesis")
+    ap.add_argument("--llm-key-env", default=None)
+    ap.add_argument("--llm-endpoint", default=None)
+    ap.add_argument("--opt", action="append", default=[], help="CommitRuntimeOptions field=value")
+    ap.add_argument("-v", "--verbose", action="store_true")
+    args = ap.parse_args(argv)
+
+    logging.basicConfig(
+        level=logging.DEBUG if args.verbose else logging.INFO,
+        format="%(asctime)s %(levelname)s %(name)s: %(message)s",
+        stream=sys.stderr,
+    )
+
+    github_url = f"https://github.com/{args.repo}"
+    install_hooks({github_url: args.mirror.resolve()})
+
+    llm = None
+    if args.llm:
+        provider, _, model = args.llm.partition("/")
+        llm = LLMSpec(
+            provider=provider,
+            model=model,
+            api_key_env=args.llm_key_env,
+            endpoint=args.llm_endpoint,
+        )
+
+    opts = CommitRuntimeOptions(**_parse_opts(args.opt))
+    if args.llm is None and opts.synthesize_with_llm:
+        # Shipped default is synthesize_with_llm=True; with no LLM the pipeline
+        # falls back to the commit message (commit_runtime.py _build_instruction).
+        logging.getLogger(__name__).warning("no --llm given: instructions use commit text")
+
+    gen_input = GenerationInput(
+        repo=RepoSpec(url=github_url, ref=args.sha, access="public"),
+        pipeline=PipelineSpec(name=PipelineName.COMMIT_RUNTIME, recipe="native"),
+        llm=llm,
+        output=OutputSpec(destination="local", org="commit-runtime", dataset_name="tasks"),
+        bootstrap=BootstrapSpec(enabled=False),
+        auth=AuthSpec(github_token_env="R2E_UNUSED_TOKEN", use_gh_cli=False, use_hf_cli=False),
+    )
+    bootstrap = load_bootstrap(args.bootstrap)
+
+    pipeline = LocalCommitRuntimePipeline(
+        gen_input, opts, bootstrap=bootstrap, sandbox_dir=args.sandbox.resolve()
+    )
+    events: list[dict] = []
+    pipeline.set_progress_callback(
+        lambda name, outcome, reason="": events.append(
+            {"t": time.time(), "name": name, "outcome": outcome, "reason": reason}
+        )
+    )
+
+    t0 = time.time()
+    result = pipeline.run(args.out.resolve())
+    elapsed = time.time() - t0
+
+    summary = {
+        "repo": args.repo,
+        "sha": args.sha,
+        "candidates": result.candidates,
+        "emitted": result.emitted,
+        "skipped": result.skipped,
+        "skip_reasons": result.skip_reasons,
+        "options": opts.model_dump() if hasattr(opts, "model_dump") else vars(opts),
+        "llm": llm.qualified_name if llm else None,
+        "llm_cost_usd": round(getattr(pipeline, "_llm_cost_usd", 0.0), 6),
+        "elapsed_sec": round(elapsed, 1),
+        "events": events,
+    }
+    args.out.mkdir(parents=True, exist_ok=True)
+    (args.out / "result.json").write_text(json.dumps(summary, indent=2))
+    print(
+        json.dumps(
+            {k: summary[k] for k in ("repo", "candidates", "emitted", "skipped", "skip_reasons", "elapsed_sec", "llm_cost_usd")}
+        )
+    )
+    return 0
+
+
+if __name__ == "__main__":
+    raise SystemExit(main())

adapter/r2e_local/pipeline.py

@@ -0,0 +1,107 @@
+"""commit_runtime with the frozen local adapter installed.
+
+Three hooks, all infrastructure, none touching pipeline logic:
+
+1. `_start_validation_sandbox` returns a LocalSandbox over the repository's
+   prepared checkout (commit_runtime.py line 518 is the only construction site).
+2. The commit walk's clone is redirected from the GitHub URL to the pinned
+   local mirror (`_shallow_clone_at_ref` at commit_runtime.py line 284). The
+   task keeps `repo = owner/name` and real commit references.
+3. Issue enrichment is disabled: `capabilities_for` returns no ISSUES
+   capability, so the pipeline uses the commit message (its documented
+   fallback for sources without an issue API). There is no network.
+"""
+
+from __future__ import annotations
+
+import json
+import shutil
+import subprocess
+from dataclasses import fields
+from pathlib import Path
+
+from repo2rlenv.bootstrap.spec import BootstrapResult, LanguageHint
+from repo2rlenv.pipelines import commit_runtime as _cr
+from repo2rlenv.pipelines.commit_runtime import CommitRuntimePipeline
+
+from .sandbox import LocalSandbox
+
+
+def load_bootstrap(path: Path) -> BootstrapResult:
+    """Load a prebaked bootstrap.json exactly as bootstrap/cache.py line 117 does."""
+    data = json.loads(Path(path).read_text())
+    if isinstance(data.get("language"), str):
+        try:
+            data["language"] = LanguageHint(data["language"])
+        except ValueError:
+            data["language"] = LanguageHint.UNKNOWN
+    if isinstance(data.get("transcript_path"), str):
+        data["transcript_path"] = Path(data["transcript_path"])
+    known = {f.name for f in fields(BootstrapResult)}
+    return BootstrapResult(**{k: v for k, v in data.items() if k in known})
+
+
+def _mirror_for(repo_url: str, mirrors: dict[str, Path]) -> Path:
+    key = repo_url.rstrip("/").removesuffix(".git").lower()
+    if key not in mirrors:
+        raise RuntimeError(f"no local mirror registered for {repo_url}")
+    return mirrors[key]
+
+
+def install_hooks(mirrors: dict[str, Path]) -> None:
+    """Redirect clones to local mirrors and disable issue lookups. Idempotent."""
+
+    normalized = {k.rstrip("/").removesuffix(".git").lower(): Path(v) for k, v in mirrors.items()}
+
+    def _local_clone(repo_url, ref, token, dest, *, depth=1, on_progress=None):
+        del token, on_progress
+        mirror = _mirror_for(repo_url, normalized)
+        dest = Path(dest)
+        if dest.exists():
+            shutil.rmtree(dest, ignore_errors=True)
+        # --shared: no object copy; the mirror outlives every temp clone.
+        subprocess.run(
+            ["git", "clone", "-q", "--shared", "--no-checkout", f"file://{mirror}", str(dest)],
+            check=True,
+            capture_output=True,
+            text=True,
+            timeout=300,
+        )
+        subprocess.run(
+            ["git", "-C", str(dest), "checkout", "-q", "--detach", ref],
+            check=True,
+            capture_output=True,
+            text=True,
+            timeout=120,
+        )
+        _ = depth  # history is complete; the depth limit is honored by list_commits' -n
+
+    _cr._shallow_clone_at_ref = _local_clone
+    _cr.capabilities_for = lambda kind: frozenset()
+
+    # git_local.show_diff decodes `git show` strictly as UTF-8 and a single
+    # commit carrying latin-1 bytes aborts the whole repository walk. Surface
+    # it as the GitError the run loop already handles (diff_fetch_failed skip).
+    _orig_show_diff = _cr.show_diff
+
+    def _show_diff(clone_dir, commit_sha):
+        try:
+            return _orig_show_diff(clone_dir, commit_sha)
+        except UnicodeDecodeError as exc:
+            raise _cr.GitError(f"non-UTF-8 diff for {commit_sha[:12]}: {exc}") from exc
+
+    _cr.show_diff = _show_diff
+
+
+class LocalCommitRuntimePipeline(CommitRuntimePipeline):
+    """CommitRuntimePipeline whose validation sandbox is a LocalSandbox."""
+
+    def __init__(self, input, options, bootstrap=None, *, sandbox_dir: Path):
+        super().__init__(input, options, bootstrap)
+        self.sandbox_dir = Path(sandbox_dir)
+
+    def _start_validation_sandbox(self):
+        return LocalSandbox.start(
+            sandbox_dir=self.sandbox_dir,
+            post_clean_cmds=list(self.bootstrap.rebuild_cmds or []),
+        )

adapter/r2e_local/sandbox.py

@@ -0,0 +1,207 @@
+"""LocalSandbox: drop-in replacement for repo2rlenv.bootstrap.docker.DockerSandbox.
+
+Interface used by the pipeline (commit_runtime.py and pr_runtime_validate.py):
+    start(...), exec(command, timeout=...), read_file(), list_dir(), cleanup(),
+    context-manager protocol. commit() and push() are Docker-only and raise.
+
+Semantics:
+  * `exec` runs `bash -lc <command>` as a subprocess with cwd = the sandbox
+    directory. The literal `/workspace` that the validation stage scripts
+    hardcode (pr_runtime_validate.py lines 66, 67, 117, 143, 151, 163, 170)
+    is rewritten to the sandbox directory.
+  * Each sandbox gets its own HOME (so `git config --global` stays local) and
+    its own virtual environment on PATH (`<sandbox>/.venv/bin`). The venv
+    directory is excluded by the stage script's `git clean -fdx -e .venv`.
+  * State persists across `exec` calls exactly as it does in a container.
+"""
+
+from __future__ import annotations
+
+import os
+import shlex
+import subprocess
+import time
+from pathlib import Path
+
+from repo2rlenv.bootstrap.docker import DockerError, ExecResult
+
+WORKSPACE_LITERAL = "/workspace"
+
+
+def _run_bash(
+    command: str,
+    *,
+    cwd: Path,
+    env: dict[str, str],
+    timeout: int,
+) -> ExecResult:
+    """Run one bash command; never raises on non-zero exit (mirrors docker._run)."""
+    start = time.monotonic()
+    try:
+        proc = subprocess.run(
+            ["bash", "-lc", command],
+            cwd=str(cwd),
+            env=env,
+            capture_output=True,
+            text=True,
+            encoding="utf-8",
+            errors="replace",
+            timeout=timeout,
+            check=False,
+        )
+    except subprocess.TimeoutExpired as exc:
+        out = exc.stdout
+        if isinstance(out, (bytes, bytearray)):
+            out = out.decode(errors="replace")
+        return ExecResult(
+            exit_code=124,
+            stdout=out or "",
+            stderr=f"[timeout after {timeout}s]",
+            duration_sec=time.monotonic() - start,
+        )
+    return ExecResult(
+        exit_code=proc.returncode,
+        stdout=proc.stdout,
+        stderr=proc.stderr,
+        duration_sec=time.monotonic() - start,
+    )
+
+
+class LocalSandbox:
+    """A persistent per-repository working directory with its own venv and HOME."""
+
+    def __init__(
+        self,
+        sandbox_dir: Path,
+        *,
+        extra_env: dict[str, str] | None = None,
+        post_clean_cmds: list[str] | None = None,
+    ):
+        self.sandbox_dir = Path(sandbox_dir).resolve()
+        # BootstrapResult.rebuild_cmds: re-applied after every `git clean -fdx`
+        # in a validation stage, because the clean removes build-generated,
+        # untracked files (hatch-vcs / setuptools-scm version modules) that an
+        # editable install needs at import time. Same role the field has upstream.
+        self.post_clean_cmds = [c for c in (post_clean_cmds or []) if c.strip()]
+        if not (self.sandbox_dir / ".git").exists():
+            raise DockerError(f"sandbox {self.sandbox_dir} is not a git checkout")
+        self.venv_dir = self.sandbox_dir / ".venv"
+        self.home_dir = self.sandbox_dir.parent / f".home-{self.sandbox_dir.name}"
+        self.home_dir.mkdir(parents=True, exist_ok=True)
+        # Attribute parity with DockerSandbox for any caller that reads them.
+        self.container_id = f"local:{self.sandbox_dir.name}"
+        self.repo_mount = str(self.sandbox_dir)
+        self.platform = "local"
+        self._alive = True
+        self._extra_env = dict(extra_env or {})
+
+    # ----- construction -------------------------------------------------------
+
+    @classmethod
+    def start(
+        cls,
+        base_image: str = "",
+        repo_dir: Path | None = None,
+        *,
+        sandbox_dir: Path | None = None,
+        platform: str = "local",
+        workdir: str = WORKSPACE_LITERAL,
+        env: dict[str, str] | None = None,
+        timeout: int = 600,
+        on_phase=None,
+        post_clean_cmds: list[str] | None = None,
+    ) -> LocalSandbox:
+        """Signature-compatible with DockerSandbox.start; `base_image` is ignored.
+
+        `sandbox_dir` must point at a prepared checkout (see bootstrap_repo.py).
+        """
+        del base_image, platform, workdir, timeout
+        target = sandbox_dir or repo_dir
+        if target is None:
+            raise DockerError("LocalSandbox.start needs sandbox_dir")
+        sb = cls(Path(target), extra_env=env, post_clean_cmds=post_clean_cmds)
+        if on_phase is not None:
+            try:
+                on_phase("sandbox_done", {"detail": sb.container_id})
+            except Exception:
+                pass
+        return sb
+
+    # ----- environment ---------------------------------------------------------
+
+    def _env(self) -> dict[str, str]:
+        venv_bin = self.venv_dir / "bin"
+        base_path = "/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin"
+        if os.path.isdir("/opt/homebrew/bin"):
+            base_path = "/opt/homebrew/bin:" + base_path
+        env = {
+            "PATH": f"{venv_bin}:{base_path}",
+            "HOME": str(self.home_dir),
+            "VIRTUAL_ENV": str(self.venv_dir),
+            "LANG": "C.UTF-8",
+            "LC_ALL": "C.UTF-8",
+            "PYTHONDONTWRITEBYTECODE": "1",
+            "PYTHONUNBUFFERED": "1",
+            "PIP_DISABLE_PIP_VERSION_CHECK": "1",
+            "GIT_TERMINAL_PROMPT": "0",
+            "R2E_SANDBOX_DIR": str(self.sandbox_dir),
+        }
+        env.update(self._extra_env)
+        return env
+
+    def _rewrite(self, command: str) -> str:
+        cmd = command.replace(WORKSPACE_LITERAL, str(self.sandbox_dir))
+        if self.post_clean_cmds:
+            rebuild = " && ".join(self.post_clean_cmds)
+            lines = cmd.split("\n")
+            out: list[str] = []
+            for line in lines:
+                out.append(line)
+                if line.lstrip().startswith("git clean -fdx"):
+                    out.append(f"({rebuild}) >/dev/null 2>&1 || true")
+            cmd = "\n".join(out)
+        # `bash -lc` runs the login profile first; on macOS path_helper reorders
+        # PATH and would put /usr/bin ahead of the venv. Re-assert it afterwards.
+        venv_bin = self.venv_dir / "bin"
+        return f'export PATH="{venv_bin}:$PATH"\n{cmd}'
+
+    # ----- DockerSandbox interface --------------------------------------------
+
+    def exec(self, command: str, *, timeout: int = 300) -> ExecResult:
+        if not self._alive:
+            raise DockerError("sandbox has been cleaned up; cannot exec")
+        return _run_bash(
+            self._rewrite(command), cwd=self.sandbox_dir, env=self._env(), timeout=timeout
+        )
+
+    def read_file(self, path: str, *, max_bytes: int = 50_000) -> str:
+        r = self.exec(f"head -c {max_bytes} {shlex.quote(self._rewrite(path))}", timeout=30)
+        if not r.ok:
+            raise DockerError(f"read_file({path!r}) failed: {r.stderr.strip()[:200]}")
+        return r.stdout
+
+    def list_dir(self, path: str = ".") -> list[str]:
+        r = self.exec(f"ls -1A {shlex.quote(self._rewrite(path))} | head -200", timeout=10)
+        if not r.ok:
+            return []
+        return [line for line in r.stdout.splitlines() if line.strip()]
+
+    def commit(self, tag: str, *, message: str = "", timeout: int = 600) -> str:
+        raise DockerError("LocalSandbox has no image to commit")
+
+    def push(self, tag: str, *, timeout: int = 900) -> bool:
+        raise DockerError("LocalSandbox has no image to push")
+
+    def cleanup(self) -> None:
+        # The checkout and venv are persistent assets; only mark closed and
+        # restore a clean tree so the next user starts from the pinned ref.
+        if not self._alive:
+            return
+        self.exec("git reset -q --hard HEAD && git clean -fdxq -e .venv || true", timeout=120)
+        self._alive = False
+
+    def __enter__(self) -> LocalSandbox:
+        return self
+
+    def __exit__(self, *exc) -> None:
+        self.cleanup()

bootstrap/AI-Planning__pddl/bootstrap.json

@@ -0,0 +1,64 @@
+{
+  "image_digest": "local-venv:AI-Planning__pddl",
+  "image_tag": "local/AI-Planning__pddl",
+  "language": "python",
+  "repo": "AI-Planning/pddl",
+  "ref": "40740b23ec2ef83c3da806cced44c1bc2b359851",
+  "rebuild_cmds": [
+    "uv pip install -q --no-deps --no-build-isolation --python .venv/bin/python -e ."
+  ],
+  "test_cmds": [
+    "python -m pytest"
+  ],
+  "smoke_passed": true,
+  "iterations": 0,
+  "build_time_sec": 111.6,
+  "llm_provider": "none",
+  "llm_cost_estimate_usd": 0.0,
+  "dockerfile_reconstruction": "",
+  "transcript_path": null,
+  "pushed_to_registry": false,
+  "verify_passed": true,
+  "verify_detail": "python 3.12.13; collected=2275; suite={'ran': True, 'rc': 0, 'sec': 109.4, 'passed': 2275, 'failed': 0, 'errors': 0}",
+  "extra": {
+    "python_version": "3.12.13",
+    "requires_python": ">=3.10",
+    "install_cmds": [
+      "uv pip install -q --python .venv/bin/python -e .",
+      "uv pip install -q --python .venv/bin/python pytest",
+      "uv pip install -q --python .venv/bin/python mistune",
+      "uv pip install -q --python .venv/bin/python pytest-lazy-fixtures"
+    ],
+    "extras": [],
+    "requirement_files": [],
+    "poetry_dev": [],
+    "collected": 2275,
+    "suite": {
+      "ran": true,
+      "rc": 0,
+      "sec": 109.4,
+      "passed": 2275,
+      "failed": 0,
+      "errors": 0
+    },
+    "sandbox_layout": "checkout with .venv inside; LocalSandbox adapter",
+    "rebuild_check_rc": 0,
+    "build_backends_installed": [
+      "setuptools",
+      "wheel",
+      "setuptools-scm",
+      "hatchling",
+      "hatch-vcs",
+      "hatch-fancy-pypi-readme",
+      "poetry-core",
+      "flit-core",
+      "pdm-backend",
+      "versioningit",
+      "pbr",
+      "editables",
+      "hatch-requirements-txt",
+      "setuptools-git-versioning",
+      "poetry-dynamic-versioning"
+    ]
+  }
+}

bootstrap/AI-Planning__pddl/requirements.lock

@@ -0,0 +1,10 @@
+click==8.5.0
+iniconfig==2.3.0
+lark==1.1.9
+mistune==3.3.4
+packaging==26.3
+-e file:///Users/beneecs/work/projects/openrsi/code/assets/sandboxes/AI-Planning__pddl
+pluggy==1.6.0
+pygments==2.21.0
+pytest==9.1.1
+pytest-lazy-fixtures==1.4.1

bootstrap/ArchiveBox__abx-dl/bootstrap.json

@@ -0,0 +1,80 @@
+{
+  "image_digest": "local-venv:ArchiveBox__abx-dl",
+  "image_tag": "local/ArchiveBox__abx-dl",
+  "language": "python",
+  "repo": "ArchiveBox/abx-dl",
+  "ref": "f0c4b66371a71a197fb46e1cd2067322d8048067",
+  "rebuild_cmds": [
+    "uv pip install -q --no-deps --no-build-isolation --python .venv/bin/python -e ."
+  ],
+  "test_cmds": [
+    "python -m pytest"
+  ],
+  "smoke_passed": true,
+  "iterations": 0,
+  "build_time_sec": 790.8,
+  "llm_provider": "none",
+  "llm_cost_estimate_usd": 0.0,
+  "dockerfile_reconstruction": "",
+  "transcript_path": null,
+  "pushed_to_registry": false,
+  "verify_passed": true,
+  "verify_detail": "python 3.12.13; collected=224; suite={'ran': True, 'rc': 0, 'sec': 764.3, 'passed': 222, 'failed': 2, 'errors': 0}",
+  "extra": {
+    "python_version": "3.12.13",
+    "requires_python": ">=3.12,<3.15",
+    "install_cmds": [
+      "uv pip install -q --python .venv/bin/python -e .",
+      "uv pip install -q --python .venv/bin/python 'flask' 'pytest' 'pytest-codeblocks' 'pytest-github-actions-annotate-failures' 'pytest-httpserver' 'pytest-sugar' 'pytest-timeout' 'pytest-xdist' 'flake8' 'mypy' 'pdm-backend' 'prek' 'pyright' 'ruff' 'ty' 'markdown'",
+      "uv pip install -q --python .venv/bin/python pytest"
+    ],
+    "extras": [],
+    "requirement_files": [],
+    "poetry_dev": [
+      "flask",
+      "pytest",
+      "pytest-codeblocks",
+      "pytest-github-actions-annotate-failures",
+      "pytest-httpserver",
+      "pytest-sugar",
+      "pytest-timeout",
+      "pytest-xdist",
+      "flake8",
+      "mypy",
+      "pdm-backend",
+      "prek",
+      "pyright",
+      "ruff",
+      "ty",
+      "markdown"
+    ],
+    "collected": 224,
+    "suite": {
+      "ran": true,
+      "rc": 0,
+      "sec": 764.3,
+      "passed": 222,
+      "failed": 2,
+      "errors": 0
+    },
+    "sandbox_layout": "checkout with .venv inside; LocalSandbox adapter",
+    "rebuild_check_rc": 0,
+    "build_backends_installed": [
+      "setuptools",
+      "wheel",
+      "setuptools-scm",
+      "hatchling",
+      "hatch-vcs",
+      "hatch-fancy-pypi-readme",
+      "poetry-core",
+      "flit-core",
+      "pdm-backend",
+      "versioningit",
+      "pbr",
+      "editables",
+      "hatch-requirements-txt",
+      "setuptools-git-versioning",
+      "poetry-dynamic-versioning"
+    ]
+  }
+}

bootstrap/ArchiveBox__abx-dl/requirements.lock

@@ -0,0 +1,61 @@
+-e file:///Users/beneecs/work/projects/openrsi/code/assets/sandboxes/ArchiveBox__abx-dl
+abx-plugins==1.13.34
+abxbus==2.5.65
+abxpkg==1.13.10
+annotated-types==0.7.0
+ast-serialize==0.6.0
+blinker==1.9.0
+certifi==2026.6.17
+charset-normalizer==3.4.9
+click==8.4.2
+execnet==2.1.2
+flake8==7.3.0
+flask==3.1.3
+idna==3.18
+imagesize==2.0.0
+iniconfig==2.3.0
+itsdangerous==2.2.0
+jinja2==3.1.6
+librt==0.13.0
+markdown==3.10.3
+markdown-it-py==4.2.0
+markupsafe==3.0.3
+mccabe==0.7.0
+mdurl==0.1.2
+mypy==2.3.0
+mypy-extensions==1.1.0
+nodeenv==1.10.0
+packaging==26.2
+pathspec==1.1.1
+pdm-backend==2.4.9
+platformdirs==4.10.0
+pluggy==1.6.0
+prek==0.4.9
+psutil==7.2.2
+pycodestyle==2.14.0
+pydantic==2.13.4
+pydantic-core==2.46.4
+pydantic-settings==2.14.2
+pyflakes==3.4.0
+pygments==2.20.0
+pyright==1.1.411
+pytest==8.4.2
+pytest-codeblocks==0.18.0
+pytest-github-actions-annotate-failures==0.4.2
+pytest-httpserver==1.1.5
+pytest-sugar==1.1.1
+pytest-timeout==2.4.0
+pytest-xdist==3.8.0
+python-dotenv==1.2.2
+requests==2.34.2
+rich==15.0.0
+rich-click==1.9.8
+ruff==0.15.21
+termcolor==3.3.0
+ty==0.0.59
+typing-extensions==4.16.0
+typing-inspection==0.4.2
+urllib3==2.7.0
+uuid7==0.1.0
+uv==0.11.29
+werkzeug==3.1.8

bootstrap/EuleMitKeule__device-tools/bootstrap.json

@@ -0,0 +1,72 @@
+{
+  "image_digest": "local-venv:EuleMitKeule__device-tools",
+  "image_tag": "local/EuleMitKeule__device-tools",
+  "language": "python",
+  "repo": "EuleMitKeule/device-tools",
+  "ref": "abf9cb217cac06d2e9402957a8a1880f92acb015",
+  "rebuild_cmds": [
+    "uv pip install -q --no-deps --no-build-isolation --python .venv/bin/python -e ."
+  ],
+  "test_cmds": [
+    "python -m pytest"
+  ],
+  "smoke_passed": true,
+  "iterations": 0,
+  "build_time_sec": 48.6,
+  "llm_provider": "none",
+  "llm_cost_estimate_usd": 0.0,
+  "dockerfile_reconstruction": "",
+  "transcript_path": null,
+  "pushed_to_registry": false,
+  "verify_passed": true,
+  "verify_detail": "python 3.13.13; collected=6; suite={'ran': True, 'rc': 0, 'sec': 1.6, 'passed': 6, 'failed': 0, 'errors': 0}",
+  "extra": {
+    "python_version": "3.13.13",
+    "requires_python": ">=3.13.2",
+    "install_cmds": [
+      "uv pip install -q --python .venv/bin/python -e .",
+      "uv pip install -q --python .venv/bin/python 'ruff' 'mypy' 'homeassistant-stubs' 'voluptuous-stubs' 'homeassistant' 'pytest' 'pytest-asyncio' 'pytest-cov'",
+      "uv pip install -q --python .venv/bin/python pytest"
+    ],
+    "extras": [],
+    "requirement_files": [],
+    "poetry_dev": [
+      "ruff",
+      "mypy",
+      "homeassistant-stubs",
+      "voluptuous-stubs",
+      "homeassistant",
+      "pytest",
+      "pytest-asyncio",
+      "pytest-cov"
+    ],
+    "collected": 6,
+    "suite": {
+      "ran": true,
+      "rc": 0,
+      "sec": 1.6,
+      "passed": 6,
+      "failed": 0,
+      "errors": 0
+    },
+    "sandbox_layout": "checkout with .venv inside; LocalSandbox adapter",
+    "rebuild_check_rc": 1,
+    "build_backends_installed": [
+      "setuptools",
+      "wheel",
+      "setuptools-scm",
+      "hatchling",
+      "hatch-vcs",
+      "hatch-fancy-pypi-readme",
+      "poetry-core",
+      "flit-core",
+      "pdm-backend",
+      "versioningit",
+      "pbr",
+      "editables",
+      "hatch-requirements-txt",
+      "setuptools-git-versioning",
+      "poetry-dynamic-versioning"
+    ]
+  }
+}

bootstrap/EuleMitKeule__device-tools/requirements.lock

@@ -0,0 +1,119 @@
+acme==5.2.2
+aiodns==4.0.0
+aiohappyeyeballs==2.7.1
+aiohasupervisor==0.3.3
+aiohttp==3.13.3
+aiohttp-asyncmdnsresolver==0.1.1
+aiohttp-cors==0.8.1
+aiohttp-fast-zlib==0.3.0
+aiooui==0.1.9
+aiosignal==1.4.0
+aiozoneinfo==0.2.3
+annotatedyaml==1.0.2
+anyio==4.15.1
+ast-serialize==0.11.2
+astral==2.2
+async-interrupt==1.2.2
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+atomicwrites-homeassistant==1.4.1
+attrs==25.4.0
+audioop-lts==0.2.1
+awesomeversion==25.8.0
+bcrypt==5.0.0
+bleak==3.0.2
+bleak-retry-connector==4.7.1
+bluetooth-adapters==2.4.0
+bluetooth-auto-recovery==1.6.4
+bluetooth-data-tools==1.28.4
+boto3==1.43.101
+botocore==1.43.101
+btsocket==0.3.0
+certifi==2026.7.22
+cffi==2.1.1
+charset-normalizer==3.5.1
+ciso8601==2.3.3
+coverage==7.16.1
+cronsim==2.7
+cryptography==46.0.5
+-e file:///Users/beneecs/work/projects/openrsi/code/assets/sandboxes/EuleMitKeule__device-tools
+envs==1.4
+fnv-hash-fast==1.6.0
+fnvhash==0.2.1
+frozenlist==1.8.0
+grpcio==1.84.0
+h11==0.16.0
+habluetooth==6.1.0
+hass-nabucasa==1.12.0
+home-assistant-bluetooth==1.13.1
+homeassistant==2026.2.3
+homeassistant-stubs==2026.2.3
+httpcore==1.0.9
+httpx==0.28.1
+icmplib==3.0.4
+idna==3.20
+ifaddr==0.2.0
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+jmespath==1.1.0
+josepy==2.2.0
+librt==0.15.0
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+markupsafe==3.0.3
+mashumaro==3.22
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+orjson==3.11.5
+packaging==26.3
+pathspec==1.1.1
+pillow==12.0.0
+pluggy==1.6.0
+propcache==0.4.1
+psutil==7.2.2
+psutil-home-assistant==0.0.1
+pycares==5.0.1
+pycognito==2024.5.1
+pycparser==3.0
+pygments==2.21.0
+pyjwt==2.10.1
+pyobjc-core==12.2.2
+pyobjc-framework-cocoa==12.2.2
+pyobjc-framework-corebluetooth==12.2.2
+pyobjc-framework-libdispatch==12.2.2
+pyopenssl==25.3.0
+pyrfc3339==2.1.0
+pyric==0.1.6.3
+pytest==9.1.1
+pytest-asyncio==1.4.0
+pytest-cov==7.1.0
+python-dateutil==2.9.0.post0
+python-slugify==8.0.4
+pytz==2026.4
+pyyaml==6.0.3
+regex==2026.9.10
+requests==2.32.5
+ruff==0.16.8
+s3transfer==0.19.2
+securetar==2025.2.1
+sentence-stream==1.3.0
+six==1.17.0
+snitun==0.45.1
+sqlalchemy==2.0.41
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bootstrap/KenKundert__nestedtext/bootstrap.json

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bootstrap/KenKundert__nestedtext/requirements.lock

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bootstrap/Kozea__tinycss2/bootstrap.json

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bootstrap/Kozea__tinycss2/requirements.lock

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bootstrap/NicolasLM__atoma/bootstrap.json

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bootstrap/NicolasLM__atoma/requirements.lock

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bootstrap/PetrochukM__HParams/bootstrap.json

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bootstrap/PetrochukM__HParams/requirements.lock

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bootstrap/PyHDI__Pyverilog/bootstrap.json

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bootstrap/PyHDI__Pyverilog/requirements.lock

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bootstrap/RDFLib__rdflib/bootstrap.json

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bootstrap/SupImDos__pydantic-argparse/requirements.lock

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bootstrap/alphanome-ai__sec-parser/bootstrap.json

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bootstrap/alphanome-ai__sec-parser/requirements.lock

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bootstrap/alvinwan__timefhuman/bootstrap.json

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bootstrap/alvinwan__timefhuman/requirements.lock

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bootstrap/antonagestam__phantom-types/bootstrap.json

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bootstrap/antonagestam__phantom-types/requirements.lock

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bootstrap/autosoft-dev__tree-hugger/bootstrap.json

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bootstrap/autosoft-dev__tree-hugger/requirements.lock

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bootstrap/beetbox__confuse/bootstrap.json

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bootstrap/beetbox__confuse/requirements.lock

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bootstrap/bihealth__vcfpy/bootstrap.json

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bootstrap/bihealth__vcfpy/requirements.lock

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bootstrap/codereverser__casparser/requirements.lock

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bootstrap/cruft__cruft/bootstrap.json

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bootstrap/cruft__cruft/requirements.lock

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bootstrap/cx-lukas-salkauskas-x__InAppPy/bootstrap.json

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bootstrap/cx-lukas-salkauskas-x__InAppPy/requirements.lock

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bootstrap/drgarcia1986__simple-settings/bootstrap.json

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bootstrap/drgarcia1986__simple-settings/requirements.lock

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bootstrap/drhagen__parsita/bootstrap.json

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bootstrap/drhagen__parsita/requirements.lock

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bootstrap/dynaconf__dynaconf/bootstrap.json

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bootstrap/dynaconf__dynaconf/requirements.lock

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bootstrap/fox-it__dissect.cobaltstrike/bootstrap.json

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