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README.md
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license: openrail
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## Dataset Description
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2896 presacral vertebrae meshes from 95 specimens representing all families of lizards
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* atlas_in/: meshes and landmarks used as an input to SlicerMorphoWeave for SSM construction and alignment
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* atlas_out/: aligned & scaled meshes and landmarks, SSM, dense correspondences, and mesh segments (n=7) produced by SlicerMorphoWeave
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* vertebrae_meshes.zip: final mesh dataset used to train models run_v72, run_v73c, run_v73h (meshes are aligned and scaled so only shape differences are learned)
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* partial_meshes.zip: partial mesh dataset used to do shape completion evaluation. created by subtracting segments from intact meshes. summarized in partial_meshing_summary.json with detailed steps on
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## Data Use
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Can be used to do train NSM models for geometric morphometrics, shape completion, and classification of squamate vertebrae.
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## Citation
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If you use this model, its weights, data, or the underlying research in your work, please cite it using the following:
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Blackburn et al. 2024. Increasing the impact of vertebrate scientific collections through 3D imaging: The openVertebrate (oVert) Thematic Collections Network. BioScience 74: 169–186.
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license: openrail
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---
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## Dataset Description
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2896 presacral vertebrae meshes from 95 specimens representing all families of lizards.
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| 22 |
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* atlas_in/: meshes and landmarks used as an input to SlicerMorphoWeave for SSM construction and alignment
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* atlas_out/: aligned & scaled meshes and landmarks, SSM, dense correspondences, and mesh segments (n=7) produced by SlicerMorphoWeave
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* vertebrae_meshes.zip: final mesh dataset used to train models run_v72, run_v73c, run_v73h (meshes are aligned and scaled so only shape differences are learned)
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* partial_meshes.zip: partial mesh dataset used to do shape completion evaluation. created by subtracting segments from intact meshes. summarized in partial_meshing_summary.json with detailed steps on the Vert-NSM GitHub Wiki (link redacted for anonymous review).
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## Data Use
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Can be used to do train NSM models for geometric morphometrics, shape completion, and classification of squamate vertebrae.
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## Citation
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If you use this model, its weights, data, or the underlying research in your work, please cite it using the following:
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Anonymous et al. 2026. “Vert-NSM” GitHub repository. https://anonymous.4open.science/r/vert-nsm-anon/ (accessed YYYY-MM-DD).
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Blackburn et al. 2024. Increasing the impact of vertebrate scientific collections through 3D imaging: The openVertebrate (oVert) Thematic Collections Network. BioScience 74: 169–186.
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