Publish HESRT 2026-09-17-v1.1: card, catalogs, real previews and verified usage examples

CHANGELOG.md

@@ -1,6 +1,8 @@
 # Release notes
 
-## 2026-09-17-v1 — publication completed 2026-09-18
+## 2026-09-17-v1.1 — documentation patch, 2026-09-18
+
+The download bootstrap now uses the public Python API, avoiding a CLI dependency incompatibility observed in a fresh environment. Sample package bytes are unchanged from 2026-09-17-v1; the original tag remains intact.
 
 The versioned release contains 4,468 sample packages from 507 GEO studies. Packaging receipts report 37,054,005 expression observations, 413,935,652,096 compressed bytes and 647,719,556,166 uncompressed member bytes. The existing sample packages and legacy repository paths are preserved.
 

README.md

@@ -58,8 +58,7 @@ Python 3.11+. The examples resolve a single revision, verify checksums, extract
 
 ```bash
 python -m pip install "huggingface_hub>=0.34,<2"
-hf download Biogod/HESRT --repo-type dataset --revision 2026-09-17-v1 \
-  --include 'examples/*' --local-dir hesrt_tools
+python -c "from huggingface_hub import snapshot_download; snapshot_download('Biogod/HESRT', repo_type='dataset', revision='2026-09-17-v1.1', allow_patterns=['examples/*'], local_dir='hesrt_tools', token=False, max_workers=4)"
 python -m pip install -r hesrt_tools/examples/requirements.txt
 python hesrt_tools/examples/quickstart.py --output hesrt_demo
 ```
@@ -73,7 +72,7 @@ from huggingface_hub import HfApi, hf_hub_download
 import pandas as pd
 
 revision = HfApi(token=False).dataset_info(
-    "Biogod/HESRT", revision="2026-09-17-v1"
+    "Biogod/HESRT", revision="2026-09-17-v1.1"
 ).sha
 catalog = pd.read_parquet(hf_hub_download(
     "Biogod/HESRT", "releases/2026-09-17/catalog.parquet",
@@ -125,4 +124,4 @@ For evaluation, keep studies and shared content together, resolve donor/cohort o
 
 ## Reuse and citation
 
-Underlying source materials retain their source-specific terms; no blanket redistribution license is asserted. Cite the source GEO accessions/publications and **HESRT release 2026-09-17-v1**, recording its resolved Hub commit. See [reuse and citation](docs/REUSE.md) and [release notes](CHANGELOG.md). This resource is intended for research, not clinical decision making.
+Underlying source materials retain their source-specific terms; no blanket redistribution license is asserted. Cite the source GEO accessions/publications and **HESRT release 2026-09-17-v1.1**, recording its resolved Hub commit. See [reuse and citation](docs/REUSE.md) and [release notes](CHANGELOG.md). This resource is intended for research, not clinical decision making.

docs/REUSE.md

@@ -8,11 +8,11 @@ The collection is intended for research and benchmarking, not clinical decision
 
 ## Cite the exact version and source studies
 
-Cite the underlying GEO accession and publication for each study used. Additionally identify **HESRT release 2026-09-17-v1**, hosted at `Biogod/HESRT`, and preserve the immutable commit resolved from that tag in the analysis record. A minimal dataset reference is:
+Cite the underlying GEO accession and publication for each study used. Additionally identify **HESRT release 2026-09-17-v1.1**, hosted at `Biogod/HESRT`, and preserve the immutable commit resolved from that tag in the analysis record. A minimal dataset reference is:
 
 ```bibtex
 @misc{hesrt20260917,
-  title = {HESRT: Human-reviewed spatial-omics sample artifacts, release 2026-09-17-v1},
+  title = {HESRT: Human-reviewed spatial-omics sample artifacts, release 2026-09-17-v1.1},
   year = {2026},
   howpublished = {Hugging Face dataset repository},
   url = {https://huggingface.co/datasets/Biogod/HESRT},

docs/USAGE.md

@@ -6,8 +6,7 @@ Use Python 3.11 or newer. Start with the catalog, not a clone or full snapshot o
 
 ```bash
 python -m pip install "huggingface_hub>=0.34,<2"
-hf download Biogod/HESRT --repo-type dataset --revision 2026-09-17-v1 \
-  --include 'examples/*' --local-dir hesrt_tools
+python -c "from huggingface_hub import snapshot_download; snapshot_download('Biogod/HESRT', repo_type='dataset', revision='2026-09-17-v1.1', allow_patterns=['examples/*'], local_dir='hesrt_tools', token=False, max_workers=4)"
 python -m pip install -r hesrt_tools/examples/requirements.txt
 ```
 
@@ -21,7 +20,7 @@ import pandas as pd
 
 repo = "Biogod/HESRT"
 revision = HfApi(token=False).dataset_info(
-    repo, revision="2026-09-17-v1"
+    repo, revision="2026-09-17-v1.1"
 ).sha
 path = hf_hub_download(repo, "releases/2026-09-17/catalog.parquet",
                        repo_type="dataset", revision=revision, token=False)
@@ -44,7 +43,7 @@ The native Dataset Viewer offers `reviewed_catalog` (all 4,468 catalog rows), `s
 ```python
 from datasets import load_dataset
 rows = load_dataset("Biogod/HESRT", "reviewed_catalog",
-                    split="reviewed", revision="2026-09-17-v1")
+                    split="reviewed", revision="2026-09-17-v1.1")
 print(rows[0]["gsm_id"])
 ```
 

examples/hesrt_io.py

@@ -14,7 +14,7 @@ import zstandard as zstd
 from huggingface_hub import HfApi, hf_hub_download
 
 REPO_ID = "Biogod/HESRT"
-RELEASE_TAG = "2026-09-17-v1"
+RELEASE_TAG = "2026-09-17-v1.1"
 PREFIX = "releases/2026-09-17/"
 
 

releases/2026-09-17/release.json

@@ -9,9 +9,9 @@
   "all_source_binary_hashes_recomputed": true,
   "roundtrip_verified_packages": 2,
   "matrix_image_transformation": "none; byte-identical lossless packaging",
-  "published_at": "2026-09-18T02:51:04.534135+00:00",
+  "published_at": "2026-09-18T02:57:13.346496+00:00",
   "repo_id": "Biogod/HESRT",
-  "payload_verified_commit": "fb10cbce420577f1dddf47ee240418e6c47a158b",
+  "payload_verified_commit": "1bc925740471d85776246fa6b99ca147b9672195",
   "documentation_version": "2026-09-18-closeout",
   "preview_samples": 9,
   "payload_integrity_check": "All 4468 remote LFS SHA256 values and sizes match packages.json"