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- .gitattributes +34 -0
- GSE242352/GSM7759698/meta.yaml +8 -0
- GSE242352/GSM7759698/metadata.json +13 -0
- GSE242352/GSM7759698/qc_panel.png +3 -0
- GSE242352/GSM7759698/scalefactors_json.json +1 -0
- GSE242352/GSM7759698/spatial.h5ad +3 -0
- GSE242352/GSM7759698/wsi.tif +3 -0
- GSE242352/GSM7759699/meta.yaml +8 -0
- GSE242352/GSM7759699/metadata.json +13 -0
- GSE242352/GSM7759699/qc_panel.png +3 -0
- GSE242352/GSM7759699/scalefactors_json.json +1 -0
- GSE242352/GSM7759699/spatial.h5ad +3 -0
- GSE242352/GSM7759699/wsi.tif +3 -0
- GSE242352/GSM7759700/meta.yaml +8 -0
- GSE242352/GSM7759700/metadata.json +13 -0
- GSE242352/GSM7759700/qc_panel.png +3 -0
- GSE242352/GSM7759700/scalefactors_json.json +1 -0
- GSE242352/GSM7759700/spatial.h5ad +3 -0
- GSE242352/GSM7759700/wsi.tif +3 -0
- GSE242352/GSM7759701/meta.yaml +8 -0
- GSE242352/GSM7759701/metadata.json +13 -0
- GSE242352/GSM7759701/qc_panel.png +3 -0
- GSE242352/GSM7759701/scalefactors_json.json +1 -0
- GSE242352/GSM7759701/spatial.h5ad +3 -0
- GSE242352/GSM7759701/wsi.tif +3 -0
- GSE242352/GSM7759702/meta.yaml +8 -0
- GSE242352/GSM7759702/metadata.json +13 -0
- GSE242352/GSM7759702/qc_panel.png +3 -0
- GSE242352/GSM7759702/scalefactors_json.json +1 -0
- GSE242352/GSM7759702/spatial.h5ad +3 -0
- GSE242352/GSM7759702/wsi.tif +3 -0
- GSE242352/GSM7759703/meta.yaml +8 -0
- GSE242352/GSM7759703/metadata.json +13 -0
- GSE242352/GSM7759703/qc_panel.png +3 -0
- GSE242352/GSM7759703/scalefactors_json.json +1 -0
- GSE242352/GSM7759703/spatial.h5ad +3 -0
- GSE242352/GSM7759703/wsi.tif +3 -0
- GSE242352/GSM7759704/meta.yaml +8 -0
- GSE242352/GSM7759704/metadata.json +13 -0
- GSE242352/GSM7759704/qc_panel.png +3 -0
- GSE242352/GSM7759704/scalefactors_json.json +1 -0
- GSE242352/GSM7759704/spatial.h5ad +3 -0
- GSE242352/GSM7759704/wsi.tif +3 -0
- GSE242352/GSM7759705/meta.yaml +8 -0
- GSE242352/GSM7759705/metadata.json +13 -0
- GSE242352/GSM7759705/qc_panel.png +3 -0
- GSE242352/GSM7759705/scalefactors_json.json +1 -0
- GSE242352/GSM7759705/spatial.h5ad +3 -0
- GSE242352/GSM7759705/wsi.tif +3 -0
- GSE242352/GSM7759706/meta.yaml +8 -0
.gitattributes
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@@ -166,3 +166,37 @@ GSE300692/Zhang_2025_GSE300692_square_008um/spatial.h5ad filter=lfs diff=lfs mer
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GSE242352/GSM7759708/wsi.tif filter=lfs diff=lfs merge=lfs -text
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GSE242352/GSM8513873/spatial.h5ad filter=lfs diff=lfs merge=lfs -text
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GSE242352/GSM8513875/wsi.tif filter=lfs diff=lfs merge=lfs -text
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GSE242352/GSM8513879/spatial.h5ad filter=lfs diff=lfs merge=lfs -text
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GSE242352/GSM8513880/spatial.h5ad filter=lfs diff=lfs merge=lfs -text
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GSE242352/GSM7759698/meta.yaml
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sample_id: Webb_2025_RecurrentGlioblastoma1
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original_id: Webb_2025_RecurrentGlioblastoma1
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source_dataset: Webb
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species: Unknown
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organ: Unknown
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| 6 |
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disease_condition: Unknown
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platform: Visium
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| 8 |
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pixel_scale: 1.0
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GSE242352/GSM7759698/metadata.json
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{
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"organism": "Homo sapiens",
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"tissue": "Brain",
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"disease": "Glioblastoma",
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"sex": "Unknown",
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"age": "Unknown",
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"technology": "Visium",
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| 8 |
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"stain_type": "H&E",
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| 9 |
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"publication_doi": "40514380",
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| 10 |
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"repository_id": "GEO (GSM7759698)",
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| 11 |
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"gsm_id": "GSM7759698",
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"geo_title": "Glioblastoma A1"
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}
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GSE242352/GSM7759698/qc_panel.png
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Git LFS Details
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GSE242352/GSM7759698/scalefactors_json.json
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{"spot_diameter_fullres": 76.54834571703982, "tissue_hires_scalef": 0.20084354, "fiducial_diameter_fullres": 123.65502000444896, "tissue_lowres_scalef": 0.06025306}
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GSE242352/GSM7759698/spatial.h5ad
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version https://git-lfs.github.com/spec/v1
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oid sha256:b6725c4e399c1a5b1848f3d039a8bff949e14e96c84db68cb36947df5fe35fea
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| 3 |
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size 222282020
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GSE242352/GSM7759698/wsi.tif
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GSE242352/GSM7759699/meta.yaml
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sample_id: Webb_2025_Oligodendroglioma11
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original_id: Webb_2025_Oligodendroglioma11
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| 3 |
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source_dataset: Webb
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| 4 |
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species: Unknown
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organ: Unknown
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| 6 |
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disease_condition: Unknown
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| 7 |
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platform: Visium
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pixel_scale: 1.0
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GSE242352/GSM7759699/metadata.json
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{
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"organism": "Homo sapiens",
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"tissue": "Brain",
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| 4 |
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"disease": "Oligodendroglioma",
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"sex": "Unknown",
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"age": "Unknown",
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"technology": "Visium",
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| 8 |
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"stain_type": "H&E",
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| 9 |
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"publication_doi": "40514380",
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"repository_id": "GEO (GSM7759699)",
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| 11 |
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"gsm_id": "GSM7759699",
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"geo_title": "Oligodendroglioma A1"
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}
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GSE242352/GSM7759699/qc_panel.png
ADDED
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Git LFS Details
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GSE242352/GSM7759699/scalefactors_json.json
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{"spot_diameter_fullres": 101.14474101922929, "tissue_hires_scalef": 0.16323866, "fiducial_diameter_fullres": 163.38765856952423, "tissue_lowres_scalef": 0.048971597}
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GSE242352/GSM7759699/spatial.h5ad
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version https://git-lfs.github.com/spec/v1
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oid sha256:9cd0825fc25ccefbefbbbbdee7e8df2e2bbfd284322870f5e6bace10d7121224
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| 3 |
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size 153157612
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GSE242352/GSM7759699/wsi.tif
ADDED
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GSE242352/GSM7759700/meta.yaml
ADDED
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sample_id: Webb_2025_Glioblastoma3
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original_id: Webb_2025_Glioblastoma3
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| 3 |
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source_dataset: Webb
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| 4 |
+
species: Unknown
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| 5 |
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organ: Unknown
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| 6 |
+
disease_condition: Unknown
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| 7 |
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platform: Visium
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| 8 |
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pixel_scale: 1.0
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GSE242352/GSM7759700/metadata.json
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{
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"organism": "Homo sapiens",
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"tissue": "Brain",
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| 4 |
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"disease": "Glioblastoma",
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| 5 |
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"sex": "Unknown",
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| 6 |
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"age": "Unknown",
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| 7 |
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"technology": "Visium",
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| 8 |
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"stain_type": "H&E",
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| 9 |
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"publication_doi": "40514380",
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| 10 |
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"repository_id": "GEO (GSM7759700)",
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| 11 |
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"gsm_id": "GSM7759700",
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| 12 |
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"geo_title": "Glioblastoma A2"
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| 13 |
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}
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GSE242352/GSM7759700/qc_panel.png
ADDED
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Git LFS Details
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GSE242352/GSM7759700/scalefactors_json.json
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{"spot_diameter_fullres": 75.86962469037293, "tissue_hires_scalef": 0.21369804, "fiducial_diameter_fullres": 122.55862449983319, "tissue_lowres_scalef": 0.064109415}
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GSE242352/GSM7759700/spatial.h5ad
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version https://git-lfs.github.com/spec/v1
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oid sha256:9cb2a784f59f83d44c38785ad27a138b81ad5afbb9dac0c2b868cc49264b5c8c
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| 3 |
+
size 190274954
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GSE242352/GSM7759700/wsi.tif
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GSE242352/GSM7759701/meta.yaml
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sample_id: Webb_2025_RecurrentGlioblastoma4
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original_id: Webb_2025_RecurrentGlioblastoma4
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| 3 |
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source_dataset: Webb
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| 4 |
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species: Unknown
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| 5 |
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organ: Unknown
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| 6 |
+
disease_condition: Unknown
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| 7 |
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platform: Visium
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| 8 |
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pixel_scale: 1.0
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GSE242352/GSM7759701/metadata.json
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{
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"organism": "Homo sapiens",
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"tissue": "Brain",
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"disease": "Glioblastoma",
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| 5 |
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"sex": "Unknown",
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"age": "Unknown",
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"technology": "Visium",
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| 8 |
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"stain_type": "H&E",
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"publication_doi": "40514380",
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"repository_id": "GEO (GSM7759701)",
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| 11 |
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"gsm_id": "GSM7759701",
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| 12 |
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"geo_title": "Glioblastoma A3"
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}
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GSE242352/GSM7759701/qc_panel.png
ADDED
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Git LFS Details
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GSE242352/GSM7759701/scalefactors_json.json
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{"spot_diameter_fullres": 76.15585316648459, "tissue_hires_scalef": 0.21367522, "fiducial_diameter_fullres": 123.02099357662897, "tissue_lowres_scalef": 0.06410257}
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GSE242352/GSM7759701/spatial.h5ad
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version https://git-lfs.github.com/spec/v1
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oid sha256:8212205193842f53c091c5b5d521683a0041e39d2d4601f8df4e9de4b6b31e7a
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size 157103312
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GSE242352/GSM7759701/wsi.tif
ADDED
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Git LFS Details
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GSE242352/GSM7759702/meta.yaml
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sample_id: Webb_2025_Astrocytoma5
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original_id: Webb_2025_Astrocytoma5
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source_dataset: Webb
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species: Unknown
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organ: Unknown
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disease_condition: Unknown
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platform: Visium
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pixel_scale: 1.0
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GSE242352/GSM7759702/metadata.json
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|
| 1 |
+
{
|
| 2 |
+
"organism": "Homo sapiens",
|
| 3 |
+
"tissue": "Brain",
|
| 4 |
+
"disease": "Glioma",
|
| 5 |
+
"sex": "Unknown",
|
| 6 |
+
"age": "Unknown",
|
| 7 |
+
"technology": "Visium",
|
| 8 |
+
"stain_type": "H&E",
|
| 9 |
+
"publication_doi": "40514380",
|
| 10 |
+
"repository_id": "GEO (GSM7759702)",
|
| 11 |
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"gsm_id": "GSM7759702",
|
| 12 |
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"geo_title": "Astrocytoma A1"
|
| 13 |
+
}
|
GSE242352/GSM7759702/qc_panel.png
ADDED
|
Git LFS Details
|
GSE242352/GSM7759702/scalefactors_json.json
ADDED
|
@@ -0,0 +1 @@
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| 1 |
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{"spot_diameter_fullres": 75.84746886716552, "tissue_hires_scalef": 0.21381228, "fiducial_diameter_fullres": 122.52283432388276, "tissue_lowres_scalef": 0.06414368}
|
GSE242352/GSM7759702/spatial.h5ad
ADDED
|
@@ -0,0 +1,3 @@
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|
|
|
|
|
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|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 3 |
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size 131764219
|
GSE242352/GSM7759702/wsi.tif
ADDED
|
|
Git LFS Details
|
GSE242352/GSM7759703/meta.yaml
ADDED
|
@@ -0,0 +1,8 @@
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|
| 1 |
+
sample_id: Webb_2025_Astrocytoma6
|
| 2 |
+
original_id: Webb_2025_Astrocytoma6
|
| 3 |
+
source_dataset: Webb
|
| 4 |
+
species: Unknown
|
| 5 |
+
organ: Unknown
|
| 6 |
+
disease_condition: Unknown
|
| 7 |
+
platform: Visium
|
| 8 |
+
pixel_scale: 1.0
|
GSE242352/GSM7759703/metadata.json
ADDED
|
@@ -0,0 +1,13 @@
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|
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|
|
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|
| 1 |
+
{
|
| 2 |
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"organism": "Homo sapiens",
|
| 3 |
+
"tissue": "Brain",
|
| 4 |
+
"disease": "Glioma",
|
| 5 |
+
"sex": "Unknown",
|
| 6 |
+
"age": "Unknown",
|
| 7 |
+
"technology": "Visium",
|
| 8 |
+
"stain_type": "H&E",
|
| 9 |
+
"publication_doi": "40514380",
|
| 10 |
+
"repository_id": "GEO (GSM7759703)",
|
| 11 |
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"gsm_id": "GSM7759703",
|
| 12 |
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"geo_title": "Astrocytoma A2"
|
| 13 |
+
}
|
GSE242352/GSM7759703/qc_panel.png
ADDED
|
Git LFS Details
|
GSE242352/GSM7759703/scalefactors_json.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"spot_diameter_fullres": 75.85695906699006, "tissue_hires_scalef": 0.2122016, "fiducial_diameter_fullres": 122.53816464667625, "tissue_lowres_scalef": 0.06366048}
|
GSE242352/GSM7759703/spatial.h5ad
ADDED
|
@@ -0,0 +1,3 @@
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|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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|
| 3 |
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size 120252176
|
GSE242352/GSM7759703/wsi.tif
ADDED
|
|
Git LFS Details
|
GSE242352/GSM7759704/meta.yaml
ADDED
|
@@ -0,0 +1,8 @@
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|
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|
| 1 |
+
sample_id: Webb_2025_DiffuseMidlineGlioma7
|
| 2 |
+
original_id: Webb_2025_DiffuseMidlineGlioma7
|
| 3 |
+
source_dataset: Webb
|
| 4 |
+
species: Unknown
|
| 5 |
+
organ: Unknown
|
| 6 |
+
disease_condition: Unknown
|
| 7 |
+
platform: Visium
|
| 8 |
+
pixel_scale: 1.0
|
GSE242352/GSM7759704/metadata.json
ADDED
|
@@ -0,0 +1,13 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
|
|
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|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"organism": "Homo sapiens",
|
| 3 |
+
"tissue": "Brain",
|
| 4 |
+
"disease": "Glioma",
|
| 5 |
+
"sex": "Unknown",
|
| 6 |
+
"age": "Unknown",
|
| 7 |
+
"technology": "Visium",
|
| 8 |
+
"stain_type": "H&E",
|
| 9 |
+
"publication_doi": "40514380",
|
| 10 |
+
"repository_id": "GEO (GSM7759704)",
|
| 11 |
+
"gsm_id": "GSM7759704",
|
| 12 |
+
"geo_title": "Diffuse Midline Glioma A1"
|
| 13 |
+
}
|
GSE242352/GSM7759704/qc_panel.png
ADDED
|
Git LFS Details
|
GSE242352/GSM7759704/scalefactors_json.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"spot_diameter_fullres": 75.84975253406424, "tissue_hires_scalef": 0.21427041, "fiducial_diameter_fullres": 122.52652332425762, "tissue_lowres_scalef": 0.06428112}
|
GSE242352/GSM7759704/spatial.h5ad
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
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|
|
|
|
|
|
| 1 |
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version https://git-lfs.github.com/spec/v1
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|
| 3 |
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size 156755824
|
GSE242352/GSM7759704/wsi.tif
ADDED
|
|
Git LFS Details
|
GSE242352/GSM7759705/meta.yaml
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
sample_id: Webb_2025_Oligodendroglioma2
|
| 2 |
+
original_id: Webb_2025_Oligodendroglioma2
|
| 3 |
+
source_dataset: Webb
|
| 4 |
+
species: Unknown
|
| 5 |
+
organ: Unknown
|
| 6 |
+
disease_condition: Unknown
|
| 7 |
+
platform: Visium
|
| 8 |
+
pixel_scale: 1.0
|
GSE242352/GSM7759705/metadata.json
ADDED
|
@@ -0,0 +1,13 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"organism": "Homo sapiens",
|
| 3 |
+
"tissue": "Brain",
|
| 4 |
+
"disease": "Oligodendroglioma",
|
| 5 |
+
"sex": "Unknown",
|
| 6 |
+
"age": "Unknown",
|
| 7 |
+
"technology": "Visium",
|
| 8 |
+
"stain_type": "H&E",
|
| 9 |
+
"publication_doi": "40514380",
|
| 10 |
+
"repository_id": "GEO (GSM7759705)",
|
| 11 |
+
"gsm_id": "GSM7759705",
|
| 12 |
+
"geo_title": "Oligodendroglioma A2"
|
| 13 |
+
}
|
GSE242352/GSM7759705/qc_panel.png
ADDED
|
Git LFS Details
|
GSE242352/GSM7759705/scalefactors_json.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"spot_diameter_fullres": 186.11598202016071, "tissue_hires_scalef": 0.08778475, "fiducial_diameter_fullres": 300.6488940325673, "tissue_lowres_scalef": 0.026335426}
|
GSE242352/GSM7759705/spatial.h5ad
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
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oid sha256:c89e1bfab0b5e0972622a593db0e229726982e91a34892daf79e188408c5cd0b
|
| 3 |
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size 140333830
|
GSE242352/GSM7759705/wsi.tif
ADDED
|
|
Git LFS Details
|
GSE242352/GSM7759706/meta.yaml
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
sample_id: Webb_2025_SPA2_A
|
| 2 |
+
original_id: Webb_2025_SPA2_A
|
| 3 |
+
source_dataset: Webb
|
| 4 |
+
species: Unknown
|
| 5 |
+
organ: Unknown
|
| 6 |
+
disease_condition: Unknown
|
| 7 |
+
platform: Visium
|
| 8 |
+
pixel_scale: 1.0
|