Release 2026-09-17-v1.5: corrections after a full value check (4,691 samples, 533 studies)

12 packages replaced with new conversions of the GEO deposit, 6 packages withdrawn. Catalog, study index, ontology sidecar, packages.json, SHA256SUMS, card and docs are updated; all other rows and packages are unchanged.

CHANGELOG.md

@@ -1,5 +1,16 @@
 # Release notes
 
+## 2026-09-17-v1.5 — corrections after a full value check, 2026-11-11
+
+- Every package of `2026-09-17-v1.4` was compared with the files deposited in GEO, value by value. 4,539 of 4,697 samples are equal to the deposit in both expression values and coordinates. 140 could not be checked automatically, in part or in full. 18 had problems and are corrected or withdrawn in this release.
+- Replaced 12 packages from 4 studies with new conversions of the GEO deposit: GSE205707 (6 samples) and GSE275125 (4 samples) had counts and gene names that were generated by the conversion script, not read from the GEO deposit; `GSM8933093` (GSE294965) had cell positions drawn at random; `GSM5643203` (GSE186290) had expression rows in the wrong order. The author reviewed each new package by eye. Do not use results computed from the old packages of these samples.
+- Withdrew 6 packages from 2 studies: `GSM9008651` and `GSM9008653` (GSE298115; rows in the wrong order and spots that do not sit on the tissue), and `GSM7825036` to `GSM7825039` (GSE244723; the deposit has no gene names).
+- The release now holds 4,691 samples from 533 studies, 54,925,797 observations and 422,084,128,535 compressed bytes (657,424,301,903 uncompressed).
+- The replaced packages store pixel positions in `obsm['spatial']` and micrometres in `obsm['spatial_um']`, and they have no `alignment_qc.png`. See `docs/KNOWN_ISSUES.md`.
+- An image-registration screen of all 4,697 packages found eight more samples whose spots do not sit on the tissue (GSE229175, GSE302160, GSE294844, GSE288607). They remain in this release and are listed in `docs/KNOWN_ISSUES.md`.
+- The preview on the dataset card now shows eight samples, because `GSM7825036` was withdrawn.
+- All other packages, catalog rows and checksums are unchanged. Earlier tags (`2026-09-17-v1` to `2026-09-17-v1.4`) are kept, so the old files stay reachable for tracing earlier work.
+
 ## 2026-09-17-v1.4 — 229 more reviewed samples and public access, 2026-11-11
 
 - Adds 229 sample packages from 28 GEO studies (17,867,398 observations, 11,612,502,472 compressed bytes). The release now holds 4,697 samples from 535 studies, 54,921,403 observations and 425,548,154,568 compressed bytes (668,913,801,315 uncompressed).

README.md

@@ -38,17 +38,17 @@ configs:
 
 | Samples (GSMs) | Studies (GSEs) | Expression observations | Compressed packages |
 |---:|---:|---:|---:|
-| 4,697 | 535 | 54,921,403 | 425.55 GB |
+| 4,691 | 533 | 54,925,797 | 422.08 GB |
 
-Each sample is a self-contained, checksummed `tar.zst` package. Browse the catalog, select the accessions you need, then download those samples. The full collection contains approximately 668.91 GB of uncompressed member data; **do not clone the repository to try one sample**.
+Each sample is a self-contained, checksummed `tar.zst` package. Browse the catalog, select the accessions you need, then download those samples. The full collection contains approximately 657.42 GB of uncompressed member data; **do not clone the repository to try one sample**.
 
 The counts describe sample artifacts and source-defined observations (spots, cells or bins), not independent donors. Every included package has a recorded human visual-review PASS. Source interpretation and outstanding verification annotations remain available in the catalog and [known issues](docs/KNOWN_ISSUES.md).
 
 ## See the data
 
-![Nine real HESRT tissue-image previews, labeled by accession and source technology](assets/overview.png)
+![Eight real HESRT tissue-image previews, labeled by accession and source technology](assets/overview.png)
 
-These nine examples span human cortex, mouse brain, spinal cord, pancreas, Visium HD, FFPE, CytAssist, legacy spatial transcriptomics and Xenium labels. They are selected illustrations, not a representative sample or a new quality assessment. Each thumbnail comes from a released package, with source hashes and display details in [preview provenance](assets/preview_manifest.json). The `visual_preview` Dataset Viewer configuration pairs tissue thumbnails with the package's existing alignment-QC graphic.
+These eight examples span human cortex, mouse brain, spinal cord, pancreas, liver, Visium HD, FFPE, CytAssist and Xenium labels. They are selected illustrations, not a representative sample or a new quality assessment. Each thumbnail comes from a released package, with source hashes and display details in [preview provenance](assets/preview_manifest.json). The `visual_preview` Dataset Viewer configuration pairs tissue thumbnails with the package's existing alignment-QC graphic.
 
 [Full preview gallery](docs/PREVIEWS.md) · [Usage guide](docs/USAGE.md) · [Schema](docs/DATA_SCHEMA.md) · [Ontology mapping](docs/ONTOLOGY_MAPPING.md) · [Known issues](docs/KNOWN_ISSUES.md) · [Reuse and citation](docs/REUSE.md)
 
@@ -58,7 +58,7 @@ HESRT is public. No sign-in, access request or form is needed: the catalog and e
 
 ## Start with a 3.2 MB sample
 
-Python 3.11+. Download the current example tools; they resolve the pinned data release `2026-09-17-v1.4` to a single commit, verify checksums, extract to disk and open the matrix in backed mode.
+Python 3.11+. Download the current example tools; they resolve the pinned data release `2026-09-17-v1.5` to a single commit, verify checksums, extract to disk and open the matrix in backed mode.
 
 ```bash
 python -m pip install "huggingface_hub>=0.34,<2"
@@ -76,7 +76,7 @@ from huggingface_hub import HfApi, hf_hub_download
 import pandas as pd
 
 revision = HfApi().dataset_info(
-    "Biogod/HESRT", revision="2026-09-17-v1.4"
+    "Biogod/HESRT", revision="2026-09-17-v1.5"
 ).sha
 catalog = pd.read_parquet(hf_hub_download(
     "Biogod/HESRT", "releases/2026-09-17/catalog.parquet",
@@ -86,16 +86,16 @@ human = catalog.loc[catalog.organism.eq("Homo sapiens")]
 print(human[["gsm_id", "tissue", "technology", "n_obs", "archive_bytes"]].head())
 ```
 
-The native Viewer has three configurations: **reviewed_catalog** (4,697 rows, 96 columns), **studies** (535 rows), and **visual_preview** (nine examples). These are lightweight indexes and previews, not streamed full-resolution matrices. `reviewed` is an inventory split, not a train/test assignment.
+The native Viewer has three configurations: **reviewed_catalog** (4,691 rows, 96 columns), **studies** (533 rows), and **visual_preview** (eight examples). These are lightweight indexes and previews, not streamed full-resolution matrices. `reviewed` is an inventory split, not a train/test assignment.
 
 ### Composition
 
 | Exact catalog label | Samples |
 |---|---:|
-| Homo sapiens | 2,837 |
-| Mus musculus | 1,653 |
-| 10x Genomics Visium | 4,145 |
-| Spatial Transcriptomics | 271 |
+| Homo sapiens | 2,833 |
+| Mus musculus | 1,651 |
+| 10x Genomics Visium | 4,143 |
+| Spatial Transcriptomics | 267 |
 | 10x Genomics Visium for FFPE | 108 |
 | 10x Genomics Visium HD | 61 |
 | 10x Genomics Visium CytAssist | 41 |
@@ -107,7 +107,7 @@ Technology and tissue labels are source-derived. Labels can be heterogeneous, an
 
 The catalog now includes a conservative machine-readable ontology layer while preserving every original metadata field. Organisms map to NCBI Taxonomy; animal anatomy maps to UBERON; plant anatomy maps to Plant Ontology; disease maps to MONDO. No fuzzy match is accepted automatically.
 
-Current coverage is **4,694/4,697 organism records**, **3,025/4,697 tissue labels**, and **1,896/2,403 non-null disease labels**. A further **105 disease labels** are explicitly classified as control/reference/non-disease states rather than being forced into MONDO. Compound tumor/specimen phrases that do not identify an ontology term with sufficient confidence stay unresolved.
+Current coverage is **4,688/4,691 organism records**, **3,023/4,691 tissue labels**, and **1,896/2,403 non-null disease labels**. A further **105 disease labels** are explicitly classified as control/reference/non-disease states rather than being forced into MONDO. Compound tumor/specimen phrases that do not identify an ontology term with sufficient confidence stay unresolved.
 
 Use `*_ontology_status` and `*_ontology_match_type` to distinguish exact mappings, source-validated aliases, controls, ambiguity and unresolved values. See the [ontology mapping protocol and audit](docs/ONTOLOGY_MAPPING.md).
 
@@ -126,7 +126,7 @@ GSM....tar.zst
   manifest.json              Per-member sizes and SHA256 hashes
 ```
 
-Expression/image binaries are unchanged by lossless packaging of the selected standardized artifacts. HESRT does **not** claim that every `X` matrix contains source-verified raw UMI counts. A release-wide numerical audit identified eight samples whose `X` matrices contain clear non-integer values: `GSM7781044` (GSE243225) and `GSM8243007`–`GSM8243013` (GSE266244). These source-defined matrices are retained as deposited/standardized rather than reverse-engineered into synthetic counts. Analyses that require integer raw counts should exclude or source-verify these eight samples. The remaining matrices are integer-typed or numerically integer-like in the audit, but that alone is not proof of raw-count provenance. Coordinate frame, units and expression representation should be interpreted using provenance. The name `wsi.tif` does not guarantee a TIFF file, a specific stain, or a full-resolution whole-slide scan.
+Expression/image binaries are unchanged by lossless packaging of the selected standardized artifacts. Release 2026-09-17-v1.5 replaced 12 packages and withdrew 6 after every released value was compared with the GEO deposit; the replaced packages store coordinates differently and have no QC graphic (see [known issues](docs/KNOWN_ISSUES.md)). HESRT does **not** claim that every `X` matrix contains source-verified raw UMI counts. A release-wide numerical audit identified eight samples whose `X` matrices contain clear non-integer values: `GSM7781044` (GSE243225) and `GSM8243007`–`GSM8243013` (GSE266244). These source-defined matrices are retained as deposited/standardized rather than reverse-engineered into synthetic counts. Analyses that require integer raw counts should exclude or source-verify these eight samples. The remaining matrices are integer-typed or numerically integer-like in the audit, but that alone is not proof of raw-count provenance. Coordinate frame, units and expression representation should be interpreted using provenance. The name `wsi.tif` does not guarantee a TIFF file, a specific stain, or a full-resolution whole-slide scan.
 
 ## Release files
 
@@ -136,8 +136,8 @@ For evaluation, keep studies and shared content together, resolve donor/cohort o
 
 ## Related resources
 
-HESRT is the human-reviewed H&E-paired collection produced by the earlier SpatialDataAgent pipeline. Its samples are also integrated into [SpatialDataAgent-DB](https://huggingface.co/datasets/Biogod/SpatialDataAgent-DB) (12,163 samples, 4,386 of them from HESRT after deduplication; release `sda-unified-20261010-v3`), which uses a different per-sample layout and its own access policy. Do not concatenate the two collections without resolving overlap. The [public SpatialDataAgent-DB catalog](https://huggingface.co/datasets/Biogod/SpatialDataAgent-DB-Catalog) and the [spatial-data-agent-db toolkit](https://github.com/Biogod2020/spatial-data-agent-db) support search and download.
+HESRT is the human-reviewed H&E-paired collection produced by the earlier SpatialDataAgent pipeline. Its samples are also integrated into [SpatialDataAgent-DB](https://huggingface.co/datasets/Biogod/SpatialDataAgent-DB) (more than 12,000 samples, most HESRT samples among them after deduplication; see its card for the current release), which uses a different per-sample layout and its own access policy. Do not concatenate the two collections without resolving overlap. The [public SpatialDataAgent-DB catalog](https://huggingface.co/datasets/Biogod/SpatialDataAgent-DB-Catalog) and the [spatial-data-agent-db toolkit](https://github.com/Biogod2020/spatial-data-agent-db) support search and download.
 
 ## Reuse and citation
 
-Underlying source materials retain their source-specific terms; no blanket redistribution license is asserted. Cite the source GEO accessions/publications and **HESRT release 2026-09-17-v1.4**, recording its resolved Hub commit. See [reuse and citation](docs/REUSE.md) and [release notes](CHANGELOG.md). This resource is intended for research, not clinical decision making.
+Underlying source materials retain their source-specific terms; no blanket redistribution license is asserted. Cite the source GEO accessions/publications and **HESRT release 2026-09-17-v1.5**, recording its resolved Hub commit. See [reuse and citation](docs/REUSE.md) and [release notes](CHANGELOG.md). This resource is intended for research, not clinical decision making.

assets/preview_manifest.json

@@ -1,6 +1,6 @@
 {
   "release": "2026-09-17",
-  "selection": "Nine illustrative accessions selected for tissue/platform diversity and modest package sizes; not random or cohort-representative",
+  "selection": "Eight illustrative accessions selected for tissue/platform diversity and modest package sizes; not random or cohort-representative",
   "original_payload_modified": false,
   "previews": [
     {
@@ -339,54 +339,6 @@
         "display_transform": "first image/page; RGB conversion and aspect-preserving downsampling only"
       }
     },
-    {
-      "title": "Legacy ST / embryonic heart",
-      "gsm_id": "GSM7825036",
-      "gse_id": "GSE244723",
-      "organism": "Homo sapiens",
-      "tissue": "embryonic heart",
-      "disease": null,
-      "technology": "Spatial Transcriptomics",
-      "stain_type": "H&E",
-      "archive_path": "releases/2026-09-17/samples/GSE244723/GSM7825036.tar.zst",
-      "archive_sha256": "2240b6870fbf29487d936d0cab8f7d538d5765d46dab0e64c2c0411c4caf91ab",
-      "n_obs": 37,
-      "n_vars": 57486,
-      "image_path": "assets/previews/GSM7825036_image.png",
-      "image_provenance": {
-        "source_member": "wsi.tif",
-        "source_sha256": "db4b6ac18d55e5a0df2927cfc6af524232ca2534791bc22f2acc4e0a7f27770b",
-        "thumbnail_sha256": "d36e2c27292ba9e8cd27f5c452d74111437c31822947c472d34603fbeefccd99",
-        "source_format": "TIFF",
-        "source_mode": "RGB",
-        "source_dimensions": [
-          2432,
-          2429
-        ],
-        "thumbnail_dimensions": [
-          641,
-          640
-        ],
-        "display_transform": "first image/page; RGB conversion and aspect-preserving downsampling only"
-      },
-      "alignment_qc_path": "assets/previews/GSM7825036_alignment_qc.png",
-      "alignment_qc_provenance": {
-        "source_member": "alignment_qc.png",
-        "source_sha256": "740538aa345257201c6be11e6840c2e34d1868940692d44b79d339a5800928a9",
-        "thumbnail_sha256": "b4424fa1d246fbfb6f2005c9d6b28baca69b676f958be47fb7f9d4341bdcfe83",
-        "source_format": "PNG",
-        "source_mode": "RGBA",
-        "source_dimensions": [
-          1418,
-          1447
-        ],
-        "thumbnail_dimensions": [
-          627,
-          640
-        ],
-        "display_transform": "first image/page; RGB conversion and aspect-preserving downsampling only"
-      }
-    },
     {
       "title": "Xenium / mouse liver",
       "gsm_id": "GSM9329349",

dataset_card_metadata.json

@@ -1,9 +1,9 @@
 {
   "dataset_name": "HESRT",
   "release": "2026-09-17",
-  "samples": 4697,
-  "studies": 535,
-  "observations": 54921403,
+  "samples": 4691,
+  "studies": 533,
+  "observations": 54925797,
   "catalog": "releases/2026-09-17/catalog.parquet",
   "packages": "releases/2026-09-17/samples/{gse_id}/{gsm_id}.tar.zst",
   "lossless": true,
@@ -11,9 +11,9 @@
   "license": "source-specific; see dataset card",
   "visual_preview": "releases/2026-09-17/visual_preview.parquet",
   "visual_preview_samples": 9,
-  "card_version": "2026-11-11-v1.4",
+  "card_version": "2026-11-11-v1.5",
   "size_unit": "GSM sample artifacts",
-  "viewer_rows": 4697,
+  "viewer_rows": 4691,
   "ontology_mapping": {
     "version": "hesrt-ontology-mapping-v1",
     "tissue": "UBERON + Plant Ontology",

docs/DATA_SCHEMA.md

@@ -2,88 +2,88 @@
 
 One row is one GSM artifact. The current catalog has 96 columns: the original 80 fields plus 16 ontology-mapping fields. The original 80 columns remain value-identical to the pre-ontology catalog. CSV is a portable fallback; Parquet retains types. Null values are not imputed.
 
-| Field | Stored dtype | Non-null / 4,697 | Meaning |
+| Field | Stored dtype | Non-null / 4,691 | Meaning |
 |---|---|---:|---|
-| `release_version` | `object` | 4,697 | Dated release namespace. |
-| `gse_id` | `object` | 4,697 | Parent GEO study accession; not a donor identifier. |
-| `gsm_id` | `object` | 4,697 | Unique catalog key, an accession-level sample artifact. |
-| `organism` | `object` | 4,697 | Source-derived organism label. |
-| `organism_raw` | `object` | 4,697 | Preserved source value before metadata normalization (serialized where needed). |
-| `organism_status` | `object` | 4,697 | Normalization status for the associated metadata field. |
-| `tissue` | `object` | 4,697 | Source-derived tissue/anatomy label; preserved independently of ontology mapping. |
-| `tissue_raw` | `object` | 4,697 | Preserved source value before metadata normalization (serialized where needed). |
-| `tissue_status` | `object` | 4,697 | Normalization status for the associated metadata field. |
+| `release_version` | `object` | 4,691 | Dated release namespace. |
+| `gse_id` | `object` | 4,691 | Parent GEO study accession; not a donor identifier. |
+| `gsm_id` | `object` | 4,691 | Unique catalog key, an accession-level sample artifact. |
+| `organism` | `object` | 4,691 | Source-derived organism label. |
+| `organism_raw` | `object` | 4,691 | Preserved source value before metadata normalization (serialized where needed). |
+| `organism_status` | `object` | 4,691 | Normalization status for the associated metadata field. |
+| `tissue` | `object` | 4,691 | Source-derived tissue/anatomy label; preserved independently of ontology mapping. |
+| `tissue_raw` | `object` | 4,691 | Preserved source value before metadata normalization (serialized where needed). |
+| `tissue_status` | `object` | 4,691 | Normalization status for the associated metadata field. |
 | `disease` | `object` | 2,403 | Source-derived disease; null is unknown, not healthy. |
 | `disease_raw` | `object` | 2,403 | Preserved source value before metadata normalization (serialized where needed). |
-| `disease_status` | `object` | 4,697 | Normalization status for the associated metadata field. |
-| `sex` | `object` | 1,449 | Source-reported sex, when present. |
-| `sex_raw` | `object` | 1,449 | Preserved source value before metadata normalization (serialized where needed). |
-| `sex_status` | `object` | 4,697 | Normalization status for the associated metadata field. |
-| `age` | `object` | 1,640 | Source-reported age; units/formats may vary. |
-| `age_raw` | `object` | 1,640 | Preserved source value before metadata normalization (serialized where needed). |
-| `age_status` | `object` | 4,697 | Normalization status for the associated metadata field. |
+| `disease_status` | `object` | 4,691 | Normalization status for the associated metadata field. |
+| `sex` | `object` | 1,447 | Source-reported sex, when present. |
+| `sex_raw` | `object` | 1,447 | Preserved source value before metadata normalization (serialized where needed). |
+| `sex_status` | `object` | 4,691 | Normalization status for the associated metadata field. |
+| `age` | `object` | 1,636 | Source-reported age; units/formats may vary. |
+| `age_raw` | `object` | 1,636 | Preserved source value before metadata normalization (serialized where needed). |
+| `age_status` | `object` | 4,691 | Normalization status for the associated metadata field. |
 | `donor_id` | `object` | 1,487 | Nullable source donor label; not independently verified. |
 | `donor_id_raw` | `object` | 1,487 | Preserved source value before metadata normalization (serialized where needed). |
-| `donor_id_status` | `object` | 4,697 | Normalization status for the associated metadata field. |
-| `condition` | `object` | 3,539 | Source-derived condition description. |
-| `condition_raw` | `object` | 3,539 | Preserved source value before metadata normalization (serialized where needed). |
-| `condition_status` | `object` | 4,697 | Normalization status for the associated metadata field. |
-| `technology` | `object` | 4,697 | Source-derived technology label. |
-| `technology_raw` | `object` | 4,697 | Preserved source value before metadata normalization (serialized where needed). |
-| `technology_status` | `object` | 4,697 | Normalization status for the associated metadata field. |
-| `platform` | `object` | 4,697 | Source platform/accession label. |
-| `platform_raw` | `object` | 4,697 | Preserved source value before metadata normalization (serialized where needed). |
-| `platform_status` | `object` | 4,697 | Normalization status for the associated metadata field. |
-| `stain_type` | `object` | 2,339 | Source-reported stain; do not infer from filenames. |
-| `stain_type_raw` | `object` | 2,339 | Preserved source value before metadata normalization (serialized where needed). |
-| `stain_type_status` | `object` | 4,697 | Normalization status for the associated metadata field. |
+| `donor_id_status` | `object` | 4,691 | Normalization status for the associated metadata field. |
+| `condition` | `object` | 3,533 | Source-derived condition description. |
+| `condition_raw` | `object` | 3,533 | Preserved source value before metadata normalization (serialized where needed). |
+| `condition_status` | `object` | 4,691 | Normalization status for the associated metadata field. |
+| `technology` | `object` | 4,691 | Source-derived technology label. |
+| `technology_raw` | `object` | 4,691 | Preserved source value before metadata normalization (serialized where needed). |
+| `technology_status` | `object` | 4,691 | Normalization status for the associated metadata field. |
+| `platform` | `object` | 4,691 | Source platform/accession label. |
+| `platform_raw` | `object` | 4,691 | Preserved source value before metadata normalization (serialized where needed). |
+| `platform_status` | `object` | 4,691 | Normalization status for the associated metadata field. |
+| `stain_type` | `object` | 2,335 | Source-reported stain; do not infer from filenames. |
+| `stain_type_raw` | `object` | 2,335 | Preserved source value before metadata normalization (serialized where needed). |
+| `stain_type_status` | `object` | 4,691 | Normalization status for the associated metadata field. |
 | `publication_doi` | `object` | 634 | Source publication DOI if available. |
 | `publication_doi_raw` | `object` | 634 | Preserved source value before metadata normalization (serialized where needed). |
-| `publication_doi_status` | `object` | 4,697 | Normalization status for the associated metadata field. |
-| `publication_pmid` | `object` | 3,914 | Source publication PubMed ID if available. |
-| `publication_pmid_raw` | `object` | 3,914 | Preserved source value before metadata normalization (serialized where needed). |
-| `publication_pmid_status` | `object` | 4,697 | Normalization status for the associated metadata field. |
-| `n_obs` | `int64` | 4,697 | Rows in the selected expression matrix; source-defined spots/cells/bins. |
-| `n_vars` | `int64` | 4,697 | Features in the selected expression matrix. |
-| `matrix_storage` | `object` | 4,697 | Dense or sparse HDF5 encoding for X. |
-| `matrix_dtype` | `object` | 4,697 | Stored expression value dtype. |
-| `coordinate_location` | `object` | 4,697 | Indexed coordinate array location. |
-| `coordinates_finite` | `bool` | 4,697 | Whether inspected coordinate values are finite. |
-| `has_raw` | `bool` | 4,697 | Preserved source value before metadata normalization (serialized where needed). |
-| `layer_names` | `object` | 4,697 | JSON-encoded list of stored layer names. |
-| `obs_ids_unique` | `bool` | 4,697 | Uniqueness of stored observation identifiers. |
-| `var_ids_unique` | `bool` | 4,697 | Uniqueness of stored feature identifiers. |
-| `image_width` | `int64` | 4,697 | First image/page width in pixels. |
-| `image_height` | `int64` | 4,697 | First image/page height in pixels. |
-| `image_dtype` | `object` | 4,697 | Image dtype/mode from header inspection. |
-| `image_compression` | `object` | 4,697 | Source compression description. |
-| `image_pages` | `int64` | 4,697 | Number of pages/frames detected by the reader. |
-| `human_review` | `object` | 4,697 | Recorded visual-review decision for the selected artifact. |
-| `reviewed_at` | `object` | 4,697 | Recorded review timestamp. |
-| `review_version` | `object` | 4,697 | Recorded review version. |
-| `normalization_review_required` | `bool` | 4,697 | Metadata normalization needs further interpretation/review. |
-| `donor_identity_verified` | `bool` | 4,697 | Whether donor identity was independently verified (false in this release). |
-| `screening_class` | `object` | 4,697 | Recorded upstream screening class; not a clinical diagnosis. |
-| `source_verification_status` | `object` | 4,697 | Recorded source/scientific verification status, separate from visual review. |
-| `integrity_annotation` | `object` | 4,697 | Retained artifact integrity annotation, if present. |
-| `recovery_source_comparison_pending` | `bool` | 4,697 | GSE174647 recovery source-comparison annotation remains pending. |
-| `geo_sample_url` | `object` | 4,697 | Source GEO sample record. |
-| `geo_study_url` | `object` | 4,697 | Source GEO study record. |
-| `archive_path` | `object` | 4,697 | Hub-relative path to the versioned sample package. |
-| `expression_member` | `object` | 4,697 | Canonical expression member filename. |
-| `image_member` | `object` | 4,697 | Canonical image member filename. |
-| `expression_state` | `object` | 4,697 | Source-defined representation; consult provenance before normalization. |
-| `source_license` | `object` | 4,697 | Source-specific terms; consult the original deposit/publication. |
-| `metadata_ruleset` | `object` | 4,697 | Deterministic metadata-normalization ruleset version. |
-| `archive_bytes` | `int64` | 4,697 | Exact compressed package bytes. |
-| `archive_sha256` | `object` | 4,697 | SHA256 of compressed package bytes. |
-| `uncompressed_bytes` | `int64` | 4,697 | Sum of non-manifest member bytes; excludes the manifest itself. |
-| `member_count` | `int64` | 4,697 | Number of tar members, including manifest.json. |
-| `roundtrip_verified` | `bool` | 4,697 | Package received an additional unpack/re-hash check during initial packaging (not all packages). |
-| `source_binary_sha256_recomputed` | `bool` | 4,697 | Image/matrix hashes were recomputed while packaging the selected input artifacts. |
-| `expression_sha256` | `object` | 4,697 | SHA256 of the selected expression binary. |
-| `image_sha256` | `object` | 4,697 | SHA256 of the selected image binary. |
-| `image_format` | `object` | 347 | Detected content format; may differ from the .tif filename. |
+| `publication_doi_status` | `object` | 4,691 | Normalization status for the associated metadata field. |
+| `publication_pmid` | `object` | 3,908 | Source publication PubMed ID if available. |
+| `publication_pmid_raw` | `object` | 3,908 | Preserved source value before metadata normalization (serialized where needed). |
+| `publication_pmid_status` | `object` | 4,691 | Normalization status for the associated metadata field. |
+| `n_obs` | `int64` | 4,691 | Rows in the selected expression matrix; source-defined spots/cells/bins. |
+| `n_vars` | `int64` | 4,691 | Features in the selected expression matrix. |
+| `matrix_storage` | `object` | 4,691 | Dense or sparse HDF5 encoding for X. |
+| `matrix_dtype` | `object` | 4,691 | Stored expression value dtype. |
+| `coordinate_location` | `object` | 4,691 | Indexed coordinate array location. |
+| `coordinates_finite` | `bool` | 4,691 | Whether inspected coordinate values are finite. |
+| `has_raw` | `bool` | 4,691 | Preserved source value before metadata normalization (serialized where needed). |
+| `layer_names` | `object` | 4,691 | JSON-encoded list of stored layer names. |
+| `obs_ids_unique` | `bool` | 4,691 | Uniqueness of stored observation identifiers. |
+| `var_ids_unique` | `bool` | 4,691 | Uniqueness of stored feature identifiers. |
+| `image_width` | `int64` | 4,691 | First image/page width in pixels. |
+| `image_height` | `int64` | 4,691 | First image/page height in pixels. |
+| `image_dtype` | `object` | 4,691 | Image dtype/mode from header inspection. |
+| `image_compression` | `object` | 4,691 | Source compression description. |
+| `image_pages` | `int64` | 4,691 | Number of pages/frames detected by the reader. |
+| `human_review` | `object` | 4,691 | Recorded visual-review decision for the selected artifact. |
+| `reviewed_at` | `object` | 4,691 | Recorded review timestamp. |
+| `review_version` | `object` | 4,691 | Recorded review version. |
+| `normalization_review_required` | `bool` | 4,691 | Metadata normalization needs further interpretation/review. |
+| `donor_identity_verified` | `bool` | 4,691 | Whether donor identity was independently verified (false in this release). |
+| `screening_class` | `object` | 4,691 | Recorded upstream screening class; not a clinical diagnosis. |
+| `source_verification_status` | `object` | 4,691 | Recorded source/scientific verification status, separate from visual review. |
+| `integrity_annotation` | `object` | 4,691 | Retained artifact integrity annotation, if present. |
+| `recovery_source_comparison_pending` | `bool` | 4,691 | GSE174647 recovery source-comparison annotation remains pending. |
+| `geo_sample_url` | `object` | 4,691 | Source GEO sample record. |
+| `geo_study_url` | `object` | 4,691 | Source GEO study record. |
+| `archive_path` | `object` | 4,691 | Hub-relative path to the versioned sample package. |
+| `expression_member` | `object` | 4,691 | Canonical expression member filename. |
+| `image_member` | `object` | 4,691 | Canonical image member filename. |
+| `expression_state` | `object` | 4,691 | Source-defined representation; consult provenance before normalization. |
+| `source_license` | `object` | 4,691 | Source-specific terms; consult the original deposit/publication. |
+| `metadata_ruleset` | `object` | 4,691 | Deterministic metadata-normalization ruleset version. |
+| `archive_bytes` | `int64` | 4,691 | Exact compressed package bytes. |
+| `archive_sha256` | `object` | 4,691 | SHA256 of compressed package bytes. |
+| `uncompressed_bytes` | `int64` | 4,691 | Sum of non-manifest member bytes; excludes the manifest itself. |
+| `member_count` | `int64` | 4,691 | Number of tar members, including manifest.json. |
+| `roundtrip_verified` | `bool` | 4,691 | Package received an additional unpack/re-hash check during initial packaging (not all packages). |
+| `source_binary_sha256_recomputed` | `bool` | 4,691 | Image/matrix hashes were recomputed while packaging the selected input artifacts. |
+| `expression_sha256` | `object` | 4,691 | SHA256 of the selected expression binary. |
+| `image_sha256` | `object` | 4,691 | SHA256 of the selected image binary. |
+| `image_format` | `object` | 359 | Detected content format; may differ from the .tif filename. |
 
 ## Ontology extension fields
 

docs/KNOWN_ISSUES.md

@@ -2,17 +2,17 @@
 
 This page describes the released artifacts, not a new scientific evaluation.
 
-All 4,697 included packages carry a recorded human visual-review PASS for the selected artifact. That label applies to visual alignment review. It does not independently certify every expression value, donor identity, source annotation, assay or downstream application.
+All 4,691 included packages carry a recorded human visual-review PASS for the selected artifact. That label applies to visual alignment review. It does not independently certify every expression value, donor identity, source annotation, assay or downstream application.
 
 The **176 GSE174647 recovery samples** retain a pending independent 540-spot source-comparison annotation (`recovery_source_comparison_pending`). They remain in the release with that flag; packaging/publication does not resolve or remove it. Five known synthetic-expression HOLDs and two workflow-contract failures were excluded during release preparation. A downstream study should choose eligibility criteria appropriate to its scientific claim and report exclusions explicitly.
 
-The 54,921,403 observations are a sum across heterogeneous technologies and source-defined observation units (for example spots, cells or bins), not a count of independent patients. The 4,697 GSMs are accession-level sample artifacts; donors, repeated sections and source duplication can cross accession boundaries. The example split groups GSEs and exact binary duplicates but does not establish donor-disjoint evaluation.
+The 54,925,797 observations are a sum across heterogeneous technologies and source-defined observation units (for example spots, cells or bins), not a count of independent patients. The 4,691 GSMs are accession-level sample artifacts; donors, repeated sections and source duplication can cross accession boundaries. The example split groups GSEs and exact binary duplicates but does not establish donor-disjoint evaluation.
 
-Expression and image binaries are byte-identical to the selected standardized inputs during packaging. This is a lossless packaging claim, **not** a claim that the preceding standardization made no changes relative to the original GEO deposit. Public JSON has host paths sanitized; original JSON hashes are recorded where applicable. Null metadata is preserved rather than filled with assumed healthy/control labels.
+Expression and image binaries are byte-identical to the selected standardized inputs during packaging (for the 12 packages replaced in 2026-09-17-v1.5, the inputs are the re-converted files described below). This is a lossless packaging claim, **not** a claim that the preceding standardization made no changes relative to the original GEO deposit. Public JSON has host paths sanitized; original JSON hashes are recorded where applicable. Null metadata is preserved rather than filled with assumed healthy/control labels.
 
 The `wsi.tif` member can contain a different image format, including JPEG, and some sources provide only reduced-resolution images. Coordinate fields are indexed, but their units and image frame must be read from provenance. Do not infer stain, physical resolution, cell identities or registration quality from filenames or thumbnail appearance.
 
-Visual previews are nine deliberately selected examples spanning tissues and platform labels. They are **not a random sample**, a quality leaderboard, a new alignment audit, or a representative estimate of cohort composition. Tissue images and pre-existing QC graphics were downsampled from the released packages. Display transformations and source hashes are recorded in `assets/preview_manifest.json`. No source matrix or image is modified by generating previews.
+Visual previews are eight deliberately selected examples spanning tissues and platform labels. They are **not a random sample**, a quality leaderboard, a new alignment audit, or a representative estimate of cohort composition. Tissue images and pre-existing QC graphics were downsampled from the released packages. Display transformations and source hashes are recorded in `assets/preview_manifest.json`. No source matrix or image is modified by generating previews.
 ## Source-defined expression matrices
 
 HESRT preserves the expression representation carried by the selected standardized artifact; it does not globally re-normalize expression. A numerical audit of release 2026-09-17 identified eight samples with clearly non-integer values in `X`: `GSM7781044` (GSE243225) and `GSM8243007`, `GSM8243008`, `GSM8243009`, `GSM8243010`, `GSM8243011`, `GSM8243012`, `GSM8243013` (GSE266244). Release 2026-09-17-v1.4 adds nine more, all from GSE252228, whose deposited matrices contain normalized values: `GSM7997843`, `GSM7997846`, `GSM7997847`, `GSM7997848`, `GSM7997849`, `GSM7997850`, `GSM7997851`, `GSM7997852`, `GSM7997853`. These matrices were not rounded or reverse-transformed. Exclude or source-verify them for analyses that assume integer raw counts. Integer-valued matrices elsewhere in HESRT are not automatically certified as raw UMI counts.
@@ -23,3 +23,64 @@ HESRT preserves the expression representation carried by the selected standardiz
 - `GSM9026210` (`GSE298932`) is a Visium HD sample stored at the 2 µm bin level (11,222,500 bins). Open it in backed mode.
 - `GSM9026963` (`GSE298953`): the feature index has the form `<symbol>_<column number>` (for example `OR4F5_2`), which was added during conversion to make names unique. Use `var['gene_name']` for the gene symbol and `var['gene_ids']` for the Ensembl ID. The source positions file marks 1,000 of 4,992 spots as in tissue, and the sample holds those 1,000 spots.
 - Three `GSE207592` samples carry the organism label `Mus` as deposited. It matches both a genus and a subgenus in NCBI Taxonomy, so no taxon ID is assigned.
+
+## Corrections in 2026-09-17-v1.5
+
+On 2026-11-11 every package of release `2026-09-17-v1.4` (4,697 samples) was compared with the files deposited in GEO. The check read the deposited files again and compared each expression value and each coordinate with the released one.
+
+| Result | Samples |
+| --- | ---: |
+| Expression values and coordinates equal to the deposit | 4,539 |
+| Could not be checked automatically, in part or in full (the deposited file could not be read by the checker) | 140 |
+| Made-up values (counts and gene names, or cell positions) | 11 |
+| Rows in the wrong order | 3 |
+| Values equal to the deposit, but the deposit has no gene names | 4 |
+
+The 140 samples in the second row were not found to be wrong; they were not checked. They remain in this release. The 18 samples in the last three rows were handled as follows.
+
+### Replaced packages (12 samples)
+
+These packages were converted again from the GEO deposit. Each new package was compared with the deposit value by value, and the author reviewed each one by eye before release.
+
+| Study | Samples | What was wrong in the old package |
+| --- | --- | --- |
+| GSE205707 | `GSM6896311`, `GSM6896312`, `GSM6896313`, `GSM6896314`, `GSM6896315`, `GSM6896316` | The counts and gene names were generated by the conversion script. They were not read from the GEO deposit. The number of observations and genes was also wrong. |
+| GSE275125 | `GSM8465980`, `GSM8465981`, `GSM8465982`, `GSM8465983` | The counts and gene names were generated by the conversion script. They were not read from the GEO deposit. |
+| GSE294965 | `GSM8933093` | The cell positions were drawn at random inside the image. The image was a low-resolution copy. |
+| GSE186290 | `GSM5643203` | The expression rows were in a different order from the barcodes and coordinates, so each spot carried the counts of another spot. |
+
+Do not use results computed from the old packages of these 12 samples. The old files remain reachable under the earlier tags only so that earlier work can be traced.
+
+The new packages differ from the other packages in a few ways:
+
+- `obsm['spatial']` holds pixel positions in `wsi.tif`. `obsm['spatial_um']` holds the same positions in micrometres.
+- `var` has the columns `feature_name`, `feature_type` and `source_feature_id`. `obs` has `source_observation_id`.
+- There is no `alignment_qc.png` file inside the `tar.zst` archive. Each new archive has seven files.
+- `provenance.json` uses the schema `hesrt-reconversion-provenance-v1` and records the reason for the replacement and the checksum of the old expression file.
+- The images are the ones used in the new review. For GSE205707 they are smaller than the old ones. For `GSM8933093` the image is now the full-resolution DAPI image (16-bit, one channel, 0.5 µm per pixel).
+
+### Withdrawn packages (6 samples)
+
+| Study | Samples | Reason |
+| --- | --- | --- |
+| GSE298115 | `GSM9008651`, `GSM9008653` | The expression rows were in the wrong order. In addition, the spots do not sit on the tissue in the image, because the deposit has no scale-factor file. A corrected conversion did not pass review. |
+| GSE244723 | `GSM7825036`, `GSM7825037`, `GSM7825038`, `GSM7825039` | The deposited count tables have no gene names, so the released files carried placeholder names such as `GENE_00001`. The values were equal to the deposit, but the samples cannot be used for any analysis by gene. |
+
+These six samples are no longer in the catalog, the study index or the checksums. `GSM7825036` was one of the nine preview samples on the dataset card, so the card now shows eight.
+
+### Samples whose spots do not sit on the tissue (8 samples, still in the release)
+
+On the same day the image registration of all 4,697 packages was screened. For each sample the screen measured how many spots fall inside the image and on tissue. 230 samples were flagged and viewed one by one. Most flags were false alarms, such as pale tissue or tissue that fills the whole image. Ten samples were confirmed as misaligned. Two of them are the withdrawn GSE298115 samples. The other eight remain in this release:
+
+| Study | Samples | What is seen |
+| --- | --- | --- |
+| GSE229175 | `GSM7156292`, `GSM7156293`, `GSM7156294`, `GSM7156295` | The whole block of spots is shifted down and to the right of the tissue. |
+| GSE302160 | `GSM9097318`, `GSM9097320` | The spot grid is shifted and extends onto bare glass. |
+| GSE294844 | `GSM8925216` | The tissue forms two horizontal strips, but the spots form two vertical strips. |
+| GSE288607 | `GSM8770960` | Only 31% of the spots fall inside the image. The spot grid is about three times larger than the image. |
+
+For these eight samples the expression values and the coordinates are equal to the deposit. Only the match between spots and image is wrong. Do not use them for analyses that pair image patches with expression until they are corrected or withdrawn in a later release.
+
+In 19 further samples the spots that fall inside the image match the tissue, but the image covers only part of the spots (5% to 50% of the spots fall outside it). The largest cases are `GSM9264149` (50%) and `GSM9264148` (25%) from GSE309269, and `GSM9026210` (18%) from GSE298932. Filter spots by the image bounds before you extract patches. For 13 samples (11 from GSE174647, `GSM8509590`, `GSM9317397`) the registration could not be judged by eye. Look at the overlay yourself before you pair image and expression for these samples.
+
+The screen has limits. It cannot detect a small shift that keeps the spots on tissue. It cannot judge images that are fully covered by tissue. It does not detect rows in the wrong order. The 4,467 samples that were not flagged were not viewed again.

docs/ONTOLOGY_MAPPING.md

@@ -23,8 +23,8 @@ Control/reference states, procedures, and non-disease phenotypes are not forced
 
 | Field | Result |
 |---|---:|
-| organism mapped | 4,694 / 4,697 |
-| tissue mapped | 3,025 / 4,697 |
+| organism mapped | 4,688 / 4,691 |
+| tissue mapped | 3,023 / 4,691 |
 | disease mapped | 1,896 / 2,403 non-null disease labels |
 | disease control/non-disease states | 105 |
 | disease ambiguous | 4 |
@@ -57,3 +57,7 @@ The validation receipt verifies all emitted UBERON/MONDO/PO IDs against the froz
 ## Rows added in 2026-09-17-v1.4
 
 The 229 samples added in `2026-09-17-v1.4` were mapped with the same frozen ontology files and the same rules. Two organism names not included in the 2026-09-18 lookup were queried on 2026-11-11 with the same exact scientific-name query: *Arabidopsis thaliana* (NCBITaxon:3702) and *Schmidtea mediterranea* (NCBITaxon:79327). The label `Mus` (three samples) matches a genus and a subgenus and is left unmapped. The coverage table above describes the full catalog.
+
+## Rows removed in 2026-09-17-v1.5
+
+Release `2026-09-17-v1.5` removed six samples (GSE244723 and GSE298115) from the catalog and from the ontology sidecar. The ontology columns of every remaining row are unchanged, including the 12 samples whose packages were replaced, because their source metadata did not change. The coverage table above describes the current catalog.

docs/PREVIEWS.md

@@ -1,6 +1,6 @@
 # HESRT visual preview
 
-Real thumbnails from nine released packages, paired with the package's existing alignment-QC graphic. Source matrices/images are unchanged. These are illustrations, not a representative sample, a stain/diagnosis annotation or a new quality evaluation. Full provenance: [preview manifest](../assets/preview_manifest.json).
+Real thumbnails from eight released packages, paired with the package's existing alignment-QC graphic. Source matrices/images are unchanged. These are illustrations, not a representative sample, a stain/diagnosis annotation or a new quality evaluation. Full provenance: [preview manifest](../assets/preview_manifest.json).
 
 ## Human frontal cortex — GSM8184321
 
@@ -72,16 +72,6 @@ GSE278662 · Homo sapiens · 10x Genomics Visium CytAssist · 3,947 observations
 
 Source: [GEO sample](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8552412). Package: `releases/2026-09-17/samples/GSE278662/GSM8552412.tar.zst`.
 
-## Legacy ST / embryonic heart — GSM7825036
-
-GSE244723 · Homo sapiens · Spatial Transcriptomics · 37 observations. Source tissue label: embryonic heart. Stain label: H&E.
-
-![Tissue thumbnail GSM7825036](../assets/previews/GSM7825036_image.png)
-
-![Existing alignment QC GSM7825036](../assets/previews/GSM7825036_alignment_qc.png)
-
-Source: [GEO sample](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7825036). Package: `releases/2026-09-17/samples/GSE244723/GSM7825036.tar.zst`.
-
 ## Xenium / mouse liver — GSM9329349
 
 GSE311681 · Mus musculus · 10x Genomics Xenium In Situ · 100,627 observations. Source tissue label: liver. Stain label: not recorded.

docs/REUSE.md

@@ -8,11 +8,11 @@ The collection is intended for research and benchmarking, not clinical decision
 
 ## Cite the exact version and source studies
 
-Cite the underlying GEO accession and publication for each study used. Additionally identify **HESRT release 2026-09-17-v1.4**, hosted at `Biogod/HESRT`, and preserve the immutable commit resolved from that tag in the analysis record. A minimal dataset reference is:
+Cite the underlying GEO accession and publication for each study used. Additionally identify **HESRT release 2026-09-17-v1.5**, hosted at `Biogod/HESRT`, and preserve the immutable commit resolved from that tag in the analysis record. A minimal dataset reference is:
 
 ```bibtex
 @misc{hesrt20260917,
-  title = {HESRT: Human-reviewed spatial-omics sample artifacts, release 2026-09-17-v1.4},
+  title = {HESRT: Human-reviewed spatial-omics sample artifacts, release 2026-09-17-v1.5},
   year = {2026},
   howpublished = {Hugging Face dataset repository},
   url = {https://huggingface.co/datasets/Biogod/HESRT},

docs/USAGE.md

@@ -1,6 +1,6 @@
 # HESRT usage guide
 
-Use Python 3.11 or newer. Start with the catalog, not a clone or full snapshot of the repository: the versioned packages total approximately **425.55 GB compressed**. This repository also retains older data paths.
+Use Python 3.11 or newer. Start with the catalog, not a clone or full snapshot of the repository: the versioned packages total approximately **422.08 GB compressed**. This repository also retains older data paths.
 
 ## Install and obtain the examples
 
@@ -20,7 +20,7 @@ import pandas as pd
 
 repo = "Biogod/HESRT"
 revision = HfApi().dataset_info(
-    repo, revision="2026-09-17-v1.4"
+    repo, revision="2026-09-17-v1.5"
 ).sha
 path = hf_hub_download(repo, "releases/2026-09-17/catalog.parquet",
                        repo_type="dataset", revision=revision)
@@ -36,12 +36,12 @@ print(len(brain), brain.archive_bytes.sum() / 1e9, "GB compressed")
 
 For a broader neuroscience cohort, inspect labels such as frontal cortex, BA44, BA46 and spinal cord as well. A text filter is not a comprehensive anatomical or clinical classification. Missing disease values mean **unknown**, not healthy controls. Use `*_raw` and `*_status` columns to inspect normalization.
 
-The native Dataset Viewer offers `reviewed_catalog` (all 4,697 catalog rows), `studies` (535 study summaries), and `visual_preview` (nine illustrative paired image/QC previews). It previews indexes and thumbnails, not the full expression matrices. With the optional `datasets` package:
+The native Dataset Viewer offers `reviewed_catalog` (all 4,691 catalog rows), `studies` (533 study summaries), and `visual_preview` (eight illustrative paired image/QC previews). It previews indexes and thumbnails, not the full expression matrices. With the optional `datasets` package:
 
 ```python
 from datasets import load_dataset
 rows = load_dataset("Biogod/HESRT", "reviewed_catalog",
-                    split="reviewed", revision="2026-09-17-v1.4")
+                    split="reviewed", revision="2026-09-17-v1.5")
 print(rows[0]["gsm_id"])
 ```
 

examples/hesrt_io.py

@@ -14,7 +14,7 @@ import zstandard as zstd
 from huggingface_hub import HfApi, hf_hub_download
 
 REPO_ID = "Biogod/HESRT"
-RELEASE_TAG = "2026-09-17-v1.4"
+RELEASE_TAG = "2026-09-17-v1.5"
 PREFIX = "releases/2026-09-17/"
 
 

releases/2026-09-17/SHA256SUMS

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-a2fff7224eee50ea7c701fdc3ac3fd1ed49ea6de462f5d7d1f6d8f7e7f5aa675  releases/2026-09-17/samples/GSE186290/GSM5643203.tar.zst
+6f604805551aeb0b98397b1488a4a45ea0dcb5534be3633600c413b8e01c19ee  releases/2026-09-17/samples/GSE186290/GSM5643203.tar.zst
 e074a241ddd8ede2dc82d0063539bb9130e65ab30c0dd90f46031d0529b6e184  releases/2026-09-17/samples/GSE186818/GSM5661565.tar.zst
 cca0b3246b170c42a26508b522ccb15d9b56e7e7cfed7c150048882454fc6e5f  releases/2026-09-17/samples/GSE188257/GSM5673398.tar.zst
 8aef2b439aa0d05df88ad9a776644663522eb3d981297ae5b5db19914cfd67b3  releases/2026-09-17/samples/GSE188257/GSM5673399.tar.zst
@@ -1009,12 +1009,12 @@ d4c3a1e53a9e1ea23a0ef98a0942ca07f693a4c7df88dac3c8cdfc567a0e3504  releases/2026-
 2428444b113668d0ec9d4cca21c090d154af784ea0180ce5a4f0a94c25bd0ce0  releases/2026-09-17/samples/GSE221571/GSM6886506.tar.zst
 0783467fc12c3a844a885a1255b880ba1ee99d47cc1e7d66ba8bfffcf6da9b0c  releases/2026-09-17/samples/GSE221571/GSM6886507.tar.zst
 a0f89772bdfb2bfd2abad0278b484f76d1321b5a9ef9831ea2222ee512786d6b  releases/2026-09-17/samples/GSE221571/GSM6886508.tar.zst
-19aef1e9a04884c0510167151e0fe8343087962b8f95f0f1cc757b00f266bc3f  releases/2026-09-17/samples/GSE205707/GSM6896311.tar.zst
-f46ecfe0c0e11f15138570d41288db3d59d699f4a0610a944b359a06517e8d43  releases/2026-09-17/samples/GSE205707/GSM6896312.tar.zst
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-da35e6e35e9732c41738692506ed4c3e232f7365b3e34592f0f386d1f1359f79  releases/2026-09-17/samples/GSE205707/GSM6896314.tar.zst
-0c4fdc85595202ef7469ad90f1bb4d6e3ed2075baec7adcaaf0c53fd8504fee0  releases/2026-09-17/samples/GSE205707/GSM6896315.tar.zst
-7438586797b519be44d72c54b2533177f5903db3beeee43adcc92cfcb2d27de0  releases/2026-09-17/samples/GSE205707/GSM6896316.tar.zst
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+291a271bd733f0b11660562b04bdc929cae7e7dec18bd1176e6c0134dfe6649f  releases/2026-09-17/samples/GSE205707/GSM6896314.tar.zst
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releases/2026-09-17/catalog.csv

@@ -456,7 +456,7 @@ release_version,gse_id,gsm_id,organism,organism_raw,organism_status,tissue,tissu
 2026-09-17,GSE185715,GSM5621976,Mus musculus,Mus musculus,unchanged,hippocampus,hippocampus,unmapped,,,missing,,,missing,,,missing,,,missing,FFPE,FFPE,unchanged,10x Genomics Visium,10x Visium,normalized,GPL30172,GPL30172,unchanged,H&E,H&E,unchanged,,,missing,36776149,36776149,unchanged,2216,31053,csr_matrix,int32,obsm/spatial,True,False,[],True,False,48640,47104,RGB,source-defined,1,PASS,2026-09-06T00:44:51.565844+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5621976,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE185715,releases/2026-09-17/samples/GSE185715/GSM5621976.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,115899463,ae50b8a87206676f6558b466810c1f89a884603e300082a6a3f69f7563a12ebd,150897091,9,False,True,5fef4f92def70c1f81e710e25b82795f2c081cd9f3e0af16739f36c155217c1d,b1f9635b84440a30f55759f8139f1d0f41a6ea6356039eb62b7cac3275998072,JPEG,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 2026-09-17,GSE185715,GSM5621977,Mus musculus,Mus musculus,unchanged,hippocampus,hippocampus,unmapped,,,missing,,,missing,,,missing,,,missing,FFPE,FFPE,unchanged,10x Genomics Visium,10x Visium,normalized,GPL30172,GPL30172,unchanged,H&E,H&E,unchanged,,,missing,36776149,36776149,unchanged,3105,31053,csr_matrix,int32,obsm/spatial,True,False,[],True,False,47616,48128,RGB,source-defined,1,PASS,2026-09-07T10:47:10.822165+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5621977,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE185715,releases/2026-09-17/samples/GSE185715/GSM5621977.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,222036873,cc12d0f5ea83e972d4fe1e9501d0ffa23701e46c1a7990a6e6583c077b85ea69,271012716,9,False,True,84dc1b698709097b267ed4c49c81ac3844364b669ec939e6c22a073cd0f0ccc9,4039c60ffd67c9004f22f13f7f3b6672c5c8c372f8e461ec7c36cef129282908,JPEG,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 2026-09-17,GSE185715,GSM5621978,Mus musculus,Mus musculus,unchanged,hippocampus,hippocampus,unmapped,,,missing,,,missing,,,missing,,,missing,FFPE,FFPE,unchanged,10x Genomics Visium,10x Visium,normalized,GPL30172,GPL30172,unchanged,H&E,H&E,unchanged,,,missing,36776149,36776149,unchanged,3047,31053,csr_matrix,int32,obsm/spatial,True,False,[],True,False,47616,48128,RGB,source-defined,1,PASS,2026-09-07T10:47:10.822165+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5621978,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE185715,releases/2026-09-17/samples/GSE185715/GSM5621978.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,206353235,4c31832e3963cc86ab0107a08e91770ea841e9d32caa0e779d7cef14dee11dd5,255320707,9,False,True,f5e14fb0231daa2eab2cf73fafeb3f09de5de34f7f4083c99175980e56cc3192,ac3581dcde1b068f123be6f8d35e41720ace0ef33969d0021a31404e7ebf0d30,JPEG,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
-2026-09-17,GSE186290,GSM5643203,Mus musculus,Mus musculus,unchanged,GAN-KP tumor,GAN-KP tumor,unmapped,gastric cancer,gastric cancer,unchanged,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL17021,GPL17021,unchanged,,,missing,,,missing,34931404,34931404,unchanged,2429,31054,csr_matrix,int32,obsm/spatial,True,False,[],True,True,1818,2000,uint8,LZW,1,PASS,2026-09-06T02:28:28.511102+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5643203,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE186290,releases/2026-09-17/samples/GSE186290/GSM5643203.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,31518340,a2fff7224eee50ea7c701fdc3ac3fd1ed49ea6de462f5d7d1f6d8f7e7f5aa675,35198335,9,False,True,510514950c073a9dd5cb0754f4366c9cd97acb5476b8abbae39b8e27ff3de998,e17407d6261840cfbcab707d28ffb2b62e72ec467c32d299e2f91e49e4c9660d,,,,,unmapped,,,MONDO:0001056,gastric cancer,MONDO,mapped,exact_label,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
+2026-09-17,GSE186290,GSM5643203,Mus musculus,Mus musculus,unchanged,GAN-KP tumor,GAN-KP tumor,unmapped,gastric cancer,gastric cancer,unchanged,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL17021,GPL17021,unchanged,,,missing,,,missing,34931404,34931404,unchanged,2429,31054,csr_matrix,int32,obsm/spatial,True,False,[],True,True,1818,2000,uint8,ADOBE_DEFLATE,1,PASS,2026-11-11T10:40:50.670698+00:00,sda-unified-20261010-v3-patch-20261110/review_pack,False,False,A,PASS,EXPRESSION_EQUAL_TO_DEPOSIT_SDA_ALL_SCORER_1.7.0,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5643203,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE186290,releases/2026-09-17/samples/GSE186290/GSM5643203.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,28508323,6f604805551aeb0b98397b1488a4a45ea0dcb5534be3633600c413b8e01c19ee,32046904,7,True,True,1431773844a944055410b388e2be4f3e6c0836db57945e4710d80d9c6387f556,b8fe6ef947647282bd180034077858ae72afc60acd25adefba71fb7b1e88e77e,TIFF,,,,unmapped,,,MONDO:0001056,gastric cancer,MONDO,mapped,exact_label,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 2026-09-17,GSE186818,GSM5661565,Takifugu alboplumbeus,Takifugu alboplumbeus,unmapped,brain,brain,unchanged,,,missing,male,male,unchanged,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL30911,GPL30911,unchanged,H&E,H&E,unchanged,,,missing,36306789,36306789,unchanged,3095,26886,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,1856,uint8,LZW,1,PASS,2026-09-06T00:35:00.602681+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5661565,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE186818,releases/2026-09-17/samples/GSE186818/GSM5661565.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,43429485,e074a241ddd8ede2dc82d0063539bb9130e65ab30c0dd90f46031d0529b6e184,46278753,9,False,True,44f2c12bc5a7e510d5d997533e814cab0dcdaf965edc62e2f1dabf5ff56905ae,e42fcc3bb8da02577a78069473e92420b2304589e87af524792fa90488754fb2,,UBERON:0000955,brain,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:433688,Takifugu alboplumbeus,mapped,exact_scientific_name
 2026-09-17,GSE188257,GSM5673398,Mus musculus,Mus musculus,unchanged,Ovary,Ovary,unmapped,,,missing,female,female,unchanged,3-4 months and 15-16 months,3-4 months and 15-16 months,needs_review,,,missing,young and aged,young and aged,unchanged,10x Genomics Visium,10x Visium,normalized,GPL21626,GPL21626,unchanged,H&E,H&E,unchanged,,,missing,35996587,35996587,unchanged,841,32285,csr_matrix,int32,obsm/spatial,True,False,[],True,True,580,600,uint8,LZW,1,PASS,2026-09-06T00:41:49.249439+00:00,full-review-revision-110,True,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5673398,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE188257,releases/2026-09-17/samples/GSE188257/GSM5673398.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,9849957,cca0b3246b170c42a26508b522ccb15d9b56e7e7cfed7c150048882454fc6e5f,42217225,9,False,True,2f4a8b1932b24237e55ac97c12a92fa9380fddd4c90ffcbcc198464581bd6cc2,5b9c6f705367bb9b4dd2ce888f8ad4de6a76bcdbe84d026a2d1b7ab391d6492b,,UBERON:0000992,ovary,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 2026-09-17,GSE188257,GSM5673399,Mus musculus,Mus musculus,unchanged,Ovary,Ovary,unmapped,,,missing,female,female,unchanged,3-4 months and 15-16 months,3-4 months and 15-16 months,needs_review,,,missing,young and aged,young and aged,unchanged,10x Genomics Visium,10x Visium,normalized,GPL21626,GPL21626,unchanged,H&E,H&E,unchanged,,,missing,35996587,35996587,unchanged,1415,32285,csr_matrix,int32,obsm/spatial,True,False,[],True,True,540,600,uint8,LZW,1,PASS,2026-09-06T00:41:49.249439+00:00,full-review-revision-110,True,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5673399,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE188257,releases/2026-09-17/samples/GSE188257/GSM5673399.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,15141080,8aef2b439aa0d05df88ad9a776644663522eb3d981297ae5b5db19914cfd67b3,65969240,9,False,True,8924813ecb28b4afacd5af152b98f9fec687748773e081294a66d09226dd67fc,c407662281a5febaa9e2e8b4ac17cd981aa3a75d98fec5278313bff826671bb7,,UBERON:0000992,ovary,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
@@ -662,12 +662,12 @@ release_version,gse_id,gsm_id,organism,organism_raw,organism_status,tissue,tissu
 2026-09-17,GSE203612,GSM6177625,Homo sapiens,Homo sapiens,unchanged,Xenograft,Xenograft,unmapped,melanoma,Melanoma,normalized,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL19415,GPL19415,unchanged,,,missing,,,missing,35931863,35931863,unchanged,2556,41797,csr_matrix,int32,"obs/x,obs/y",True,False,[],True,True,1978,2000,uint8,NONE,1,PASS,2026-09-07T13:47:35.320725+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6177625,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE203612,releases/2026-09-17/samples/GSE203612/GSM6177625.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,25677949,7661f82c5155da4f0c68b74c2840f934c58d8d3ead6fab2de4c5d2824e6d9e94,36176526,9,False,True,4d81842263959b6830d25f7cbcb4612702e0d573d9abdf35f3da75f1e8f663d6,1f399d511aa3cf6496ec335ebb184c7c46f1dc11fbb11c1dd25399dadb255ac6,,,,,unmapped,,,MONDO:0005105,melanoma,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE205307,GSM6210023,Mus musculus,Mus musculus,unchanged,tissue specimen,tissue specimen,unmapped,,,missing,,,missing,6–8 weeks,6-8 weeks old,normalized,,,missing,Drug_Control (PBS),Drug_Control (PBS),unchanged,10x Genomics Visium,10x Visium,normalized,GPL31136,GPL31136,unchanged,H&E,H&E,unchanged,10.1038/s41416-024-02617-7,10.1038/s41416-024-02617-7,unchanged,38424167,38424167,unchanged,2221,32285,csr_matrix,int64,"obs/x,obs/y",True,False,[],True,True,1900,2000,uint8,NONE,1,PASS,2026-09-06T02:35:13.968315+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6210023,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205307,releases/2026-09-17/samples/GSE205307/GSM6210023.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,28295765,690b35a67b4a6d163f417192676f64b3e2fe21812d56bcf320a2e07ee6fb7754,38251722,9,False,True,7f51c05b69768c1dd42b57696bedffdb2a44edbad8e88ff3e4197053f75b87e7,a75b82864046051e2edb85da61f0d5380ac938ac62f2cf828fb78330412f348d,,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 2026-09-17,GSE205307,GSM6210024,Mus musculus,Mus musculus,unchanged,tissue specimen,tissue specimen,unmapped,,,missing,,,missing,6–8 weeks,6-8 weeks old,normalized,,,missing,Drug_rIL7 (recombinant IL7),Drug_rIL7 (recombinant IL7),unchanged,10x Genomics Visium,10x Visium,normalized,GPL31136,GPL31136,unchanged,H&E,H&E,unchanged,10.1038/s41416-024-02617-7,10.1038/s41416-024-02617-7,unchanged,38424167,38424167,unchanged,1951,32285,csr_matrix,int64,"obs/x,obs/y",True,False,[],True,True,1962,2000,uint8,NONE,1,PASS,2026-09-06T02:35:13.968315+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6210024,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205307,releases/2026-09-17/samples/GSE205307/GSM6210024.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,28054030,3348b5d90da398575b75edc1db8b89e94d03db0f33fdbebea083dcebe7453cf9,38563408,9,False,True,ddd03f9282d6f589d969621bec84e5d2b5f4c758839b0f6c8aa40f064151dd94,8532bf5beb3aa353e653a50b04f306728e805fd948446d3a3157ad0462fb2f4f,,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
-2026-09-17,GSE205707,GSM6896311,Mus musculus,Mus musculus,unchanged,Skeletal Muscle,Skeletal Muscle,unmapped,,,missing,female,Female,normalized,,,missing,,,missing,None,None,needs_review,10x Genomics Visium,10x Visium,normalized,GPL24247,GPL24247,unchanged,,,missing,10.1172/jci.insight.162835,https://doi.org/10.1172/jci.insight.162835,normalized,,,missing,595,1000,csr_matrix,int32,"obs/x,obs/y",True,False,[],True,True,29437,28576,uint8,NONE,1,PASS,2026-09-06T02:18:13.637825+00:00,full-review-revision-110,True,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6896311,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205707,releases/2026-09-17/samples/GSE205707/GSM6896311.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,1031932676,19aef1e9a04884c0510167151e0fe8343087962b8f95f0f1cc757b00f266bc3f,2529506508,9,False,True,87cf86203501d6fac409c5e2b5198544aa1412d9690e7fd31a8a6720671972d7,29029ae9ab7dbf269cf09480ec4e4c59dee8c72eb61860c7eeb4c184974fc536,,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
-2026-09-17,GSE205707,GSM6896312,Mus musculus,Mus musculus,unchanged,Skeletal Muscle,Skeletal Muscle,unmapped,,,missing,female,Female,normalized,,,missing,,,missing,None,None,needs_review,10x Genomics Visium,10x Visium,normalized,GPL24247,GPL24247,unchanged,,,missing,10.1172/jci.insight.162835,https://doi.org/10.1172/jci.insight.162835,normalized,,,missing,455,1000,csr_matrix,int32,"obs/x,obs/y",True,False,[],True,True,28012,27701,uint8,NONE,1,PASS,2026-09-06T02:18:13.637825+00:00,full-review-revision-110,True,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6896312,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205707,releases/2026-09-17/samples/GSE205707/GSM6896312.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,944716447,f46ecfe0c0e11f15138570d41288db3d59d699f4a0610a944b359a06517e8d43,2331666238,9,False,True,4d39990a627570f8848129e5b6c6a9cfb0407530cc0d9fb450bb7d787abe97ba,7563ffcaccfe5a12c9bb90c33959e7144950509b72d49b67b4117636fe609f20,,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
-2026-09-17,GSE205707,GSM6896313,Canis lupus familiaris,Canis lupus familiaris,unchanged,Skeletal Muscle,Skeletal Muscle,unmapped,,,missing,female,Female,normalized,,,missing,,,missing,None,None,needs_review,10x Genomics Visium,10x Visium,normalized,GPL25760,GPL25760,unchanged,,,missing,10.1172/jci.insight.162835,https://doi.org/10.1172/jci.insight.162835,normalized,,,missing,837,1000,csr_matrix,int32,"obs/x,obs/y",True,False,[],True,True,28760,29534,uint8,NONE,1,PASS,2026-09-06T02:18:13.637825+00:00,full-review-revision-110,True,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6896313,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205707,releases/2026-09-17/samples/GSE205707/GSM6896313.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,1334951763,766f794ef95d63cd2f70fcdd82dd68152cf3f4b16822b958dd1860ae76f7916c,2555525470,9,False,True,236411bbe35428584bc27d126369adbfec85d0bea46170e5f4bec51d1269163a,395b4d329a7fee36fbfff015136995290cb1b0012b0d935af0d8a929ed04c4a6,,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:9615,Canis lupus familiaris,mapped,exact_scientific_name
-2026-09-17,GSE205707,GSM6896314,Canis lupus familiaris,Canis lupus familiaris,unchanged,Skeletal Muscle,Skeletal Muscle,unmapped,,,missing,female,Female,normalized,,,missing,,,missing,None,None,needs_review,10x Genomics Visium,10x Visium,normalized,GPL25760,GPL25760,unchanged,,,missing,10.1172/jci.insight.162835,https://doi.org/10.1172/jci.insight.162835,normalized,,,missing,718,1000,csr_matrix,int32,"obs/x,obs/y",True,False,[],True,True,29357,32044,uint8,NONE,1,PASS,2026-09-06T02:18:13.637825+00:00,full-review-revision-110,True,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6896314,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205707,releases/2026-09-17/samples/GSE205707/GSM6896314.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,1397784980,da35e6e35e9732c41738692506ed4c3e232f7365b3e34592f0f386d1f1359f79,2827726312,9,False,True,3f8c56e6117f0431e047af96be262a0bf85248c8074d9d5884f78805defc3dbb,71544efced155ff63b2fa5da5ddd1a6c658ec23292d699ffb6c78c658d0df77c,,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:9615,Canis lupus familiaris,mapped,exact_scientific_name
-2026-09-17,GSE205707,GSM6896315,Canis lupus familiaris,Canis lupus familiaris,unchanged,Skeletal Muscle,Skeletal Muscle,unmapped,,,missing,female,Female,normalized,,,missing,,,missing,None,None,needs_review,10x Genomics Visium,10x Visium,normalized,GPL25760,GPL25760,unchanged,,,missing,10.1172/jci.insight.162835,https://doi.org/10.1172/jci.insight.162835,normalized,,,missing,2005,1000,csr_matrix,int32,"obs/x,obs/y",True,False,[],True,True,27763,27154,uint8,NONE,1,PASS,2026-09-07T11:13:33.058851+00:00,full-review-revision-110,True,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6896315,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205707,releases/2026-09-17/samples/GSE205707/GSM6896315.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,1481079101,0c4fdc85595202ef7469ad90f1bb4d6e3ed2075baec7adcaaf0c53fd8504fee0,2272287778,9,False,True,39279fcb9063dec2e63ffcded6dd54f57b239bfac9621a51443bda821af92b58,53b8e5698a50453e906636ee2f9372c5133ab9995dcaddca79f490e0f0c8f48b,,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:9615,Canis lupus familiaris,mapped,exact_scientific_name
-2026-09-17,GSE205707,GSM6896316,Canis lupus familiaris,Canis lupus familiaris,unchanged,Skeletal Muscle,Skeletal Muscle,unmapped,,,missing,female,Female,normalized,,,missing,,,missing,None,None,needs_review,10x Genomics Visium,10x Visium,normalized,GPL25760,GPL25760,unchanged,,,missing,10.1172/jci.insight.162835,https://doi.org/10.1172/jci.insight.162835,normalized,,,missing,2402,1000,csr_matrix,int32,"obs/x,obs/y",True,False,[],True,True,28124,27806,uint8,NONE,1,PASS,2026-09-06T02:18:13.637825+00:00,full-review-revision-110,True,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6896316,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205707,releases/2026-09-17/samples/GSE205707/GSM6896316.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,1502214554,7438586797b519be44d72c54b2533177f5903db3beeee43adcc92cfcb2d27de0,2356273112,9,False,True,01823d55f0e8dcf34513e124098a55fa71f848d058864f245e5a878f5754d731,bb535d347b5f24caa91bc6469523e5b530b81507eba8b365fb4597c4869201d7,,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:9615,Canis lupus familiaris,mapped,exact_scientific_name
+2026-09-17,GSE205707,GSM6896311,Mus musculus,Mus musculus,unchanged,Skeletal Muscle,Skeletal Muscle,unmapped,,,missing,female,Female,normalized,,,missing,,,missing,None,None,needs_review,10x Genomics Visium,10x Visium,normalized,GPL24247,GPL24247,unchanged,,,missing,10.1172/jci.insight.162835,https://doi.org/10.1172/jci.insight.162835,normalized,,,missing,708,32285,csr_matrix,float64,obsm/spatial,True,False,[],True,True,18082,17553,uint8,ADOBE_DEFLATE,1,PASS,2026-11-11T06:16:34.459134+00:00,sda-unified-20261010-v3-patch-20261110/review_pack,True,False,A,PASS,EXPRESSION_EQUAL_TO_DEPOSIT_SDA_ALL_SCORER_1.7.0,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6896311,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205707,releases/2026-09-17/samples/GSE205707/GSM6896311.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,522216062,699f191ae7a286dc396222bf6e28d69f9f9adf81d20544f2c561513ae2e5318d,524403465,7,True,True,cb7befce3e953097513c4c473c778cc8f67bf7e93e943b8f3e57173b8f572232,8a70b747714da76114802d81fa14bf18862e5a378960e2759e9d2f53598556cc,TIFF,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
+2026-09-17,GSE205707,GSM6896312,Mus musculus,Mus musculus,unchanged,Skeletal Muscle,Skeletal Muscle,unmapped,,,missing,female,Female,normalized,,,missing,,,missing,None,None,needs_review,10x Genomics Visium,10x Visium,normalized,GPL24247,GPL24247,unchanged,,,missing,10.1172/jci.insight.162835,https://doi.org/10.1172/jci.insight.162835,normalized,,,missing,569,32285,csr_matrix,float64,obsm/spatial,True,False,[],True,True,17259,17068,uint8,ADOBE_DEFLATE,1,PASS,2026-11-11T06:16:34.459134+00:00,sda-unified-20261010-v3-patch-20261110/review_pack,True,False,A,PASS,EXPRESSION_EQUAL_TO_DEPOSIT_SDA_ALL_SCORER_1.7.0,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6896312,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205707,releases/2026-09-17/samples/GSE205707/GSM6896312.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,478257671,a4eb5ccadf0503e4e544c02c79f9cd04edead74ae74b073fc1b025b36b88b327,480599969,7,True,True,66bc002cacc92fd78a1b038aa9d5762be289c5b739bb970066a27f90c5d02e42,5576273a37a9fe969484c2184ade8b7d4c67178775de24768b4799bbefbbc2d6,TIFF,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
+2026-09-17,GSE205707,GSM6896313,Canis lupus familiaris,Canis lupus familiaris,unchanged,Skeletal Muscle,Skeletal Muscle,unmapped,,,missing,female,Female,normalized,,,missing,,,missing,None,None,needs_review,10x Genomics Visium,10x Visium,normalized,GPL25760,GPL25760,unchanged,,,missing,10.1172/jci.insight.162835,https://doi.org/10.1172/jci.insight.162835,normalized,,,missing,2432,32704,csr_matrix,float64,obsm/spatial,True,False,[],True,True,17658,18133,uint8,ADOBE_DEFLATE,1,PASS,2026-11-11T06:16:34.459134+00:00,sda-unified-20261010-v3-patch-20261110/review_pack,True,False,A,PASS,EXPRESSION_EQUAL_TO_DEPOSIT_SDA_ALL_SCORER_1.7.0,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6896313,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205707,releases/2026-09-17/samples/GSE205707/GSM6896313.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,590272123,6957adac9a95d0b259db9a4e2ee36c468684701ce886e7e154dd2123ffb05900,593285007,7,True,True,70319077fd8d83d34c397e0a61dc9d11f04f786457a43feef6c1e85d93333335,91745c0424da16afa8a60f156e0ad0aae63def1fbc85b162c92c8cfcf042f070,TIFF,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:9615,Canis lupus familiaris,mapped,exact_scientific_name
+2026-09-17,GSE205707,GSM6896314,Canis lupus familiaris,Canis lupus familiaris,unchanged,Skeletal Muscle,Skeletal Muscle,unmapped,,,missing,female,Female,normalized,,,missing,,,missing,None,None,needs_review,10x Genomics Visium,10x Visium,normalized,GPL25760,GPL25760,unchanged,,,missing,10.1172/jci.insight.162835,https://doi.org/10.1172/jci.insight.162835,normalized,,,missing,2600,32704,csr_matrix,float64,obsm/spatial,True,False,[],True,True,18035,19686,uint8,ADOBE_DEFLATE,1,PASS,2026-11-11T06:16:34.459134+00:00,sda-unified-20261010-v3-patch-20261110/review_pack,True,False,A,PASS,EXPRESSION_EQUAL_TO_DEPOSIT_SDA_ALL_SCORER_1.7.0,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6896314,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205707,releases/2026-09-17/samples/GSE205707/GSM6896314.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,643109296,291a271bd733f0b11660562b04bdc929cae7e7dec18bd1176e6c0134dfe6649f,646130942,7,True,True,121bc0890c3177f8aecc897ec3de27f5976cb47bf526ad315440020a1c7b2c4b,4042d3efde6fa798392d25bc3a1db4640823f68e5e3e2a5aa38dc09895853675,TIFF,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:9615,Canis lupus familiaris,mapped,exact_scientific_name
+2026-09-17,GSE205707,GSM6896315,Canis lupus familiaris,Canis lupus familiaris,unchanged,Skeletal Muscle,Skeletal Muscle,unmapped,,,missing,female,Female,normalized,,,missing,,,missing,None,None,needs_review,10x Genomics Visium,10x Visium,normalized,GPL25760,GPL25760,unchanged,,,missing,10.1172/jci.insight.162835,https://doi.org/10.1172/jci.insight.162835,normalized,,,missing,3122,32704,csr_matrix,float64,obsm/spatial,True,False,[],True,True,17086,16711,uint8,ADOBE_DEFLATE,1,PASS,2026-11-11T06:16:34.459134+00:00,sda-unified-20261010-v3-patch-20261110/review_pack,True,False,A,PASS,EXPRESSION_EQUAL_TO_DEPOSIT_SDA_ALL_SCORER_1.7.0,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6896315,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205707,releases/2026-09-17/samples/GSE205707/GSM6896315.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,680963981,effbe85ac198dab036e59e98daed138014025433c4c003098aeacde790a8b7bf,684028870,7,True,True,1c84d62d1a1d9430e4382d98f6f853940a158d1a4fac259b84958fd84bcb900f,7779131f29ba4f43b6948a159acb8c4ae02038d1970979fd2abefb67eebacfa0,TIFF,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:9615,Canis lupus familiaris,mapped,exact_scientific_name
+2026-09-17,GSE205707,GSM6896316,Canis lupus familiaris,Canis lupus familiaris,unchanged,Skeletal Muscle,Skeletal Muscle,unmapped,,,missing,female,Female,normalized,,,missing,,,missing,None,None,needs_review,10x Genomics Visium,10x Visium,normalized,GPL25760,GPL25760,unchanged,,,missing,10.1172/jci.insight.162835,https://doi.org/10.1172/jci.insight.162835,normalized,,,missing,3393,32704,csr_matrix,float64,obsm/spatial,True,False,[],True,True,17264,17069,uint8,ADOBE_DEFLATE,1,PASS,2026-11-11T06:16:34.459134+00:00,sda-unified-20261010-v3-patch-20261110/review_pack,True,False,A,PASS,EXPRESSION_EQUAL_TO_DEPOSIT_SDA_ALL_SCORER_1.7.0,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6896316,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205707,releases/2026-09-17/samples/GSE205707/GSM6896316.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,584846409,0f1dfe4d2b701ed69e274cc676c8d7359807e5fe29c69be8c9d939fa339b1bf5,587928098,7,True,True,85baf6fa32ccd31bbe9abf67dc0b3c8ac78450b0a0df53342f872df2fbcbac30,b47dad41938e1a161d14a0433fa2f96d0597c6ab897b5ebd445ff67bbef4c971,TIFF,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:9615,Canis lupus familiaris,mapped,exact_scientific_name
 2026-09-17,GSE206245,GSM6248646,Homo sapiens,Homo sapiens,unchanged,Nasopharynx,Nasopharynx,unmapped,Nasopharyngeal carcinoma,Nasopharyngeal carcinoma,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,,,missing,,,missing,39231979,39231979,unchanged,2021,17943,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,1942,uint8,NONE,1,PASS,2026-09-06T00:44:51.565844+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6248646,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE206245,releases/2026-09-17/samples/GSE206245/GSM6248646.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,22397880,74475f0c2362a52028e37cd7ecdbcb40599dbccc30fff8458ee2f78d232b1ce5,130787404,9,False,True,b6a150c9eac78e25b93cc03082257a8bf1bd1b7682b85ae1dfbff866cf80de76,68d6d22ed77d20ff4e0543ddeca7060c8aa0c2ced3e79cc4957d337bf23b8459,,UBERON:0001728,nasopharynx,UBERON,mapped,exact_label,,MONDO:0015459,nasopharyngeal carcinoma,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE206245,GSM6248647,Homo sapiens,Homo sapiens,unchanged,Nasopharynx,Nasopharynx,unmapped,Nasopharyngeal carcinoma,Nasopharyngeal carcinoma,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,,,missing,,,missing,39231979,39231979,unchanged,2614,17943,csr_matrix,int64,obsm/spatial,True,False,[],True,True,1969,2000,uint8,NONE,1,PASS,2026-09-07T13:47:35.320725+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6248647,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE206245,releases/2026-09-17/samples/GSE206245/GSM6248647.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,22332673,2e1d451e963359d8d64186ff906e49cee05e01956f803d20fad63ff03997b474,111375357,9,False,True,506949f986432f1692fd9955e2080322cc80ddf33decdbf9b2d8a2d551bc2a12,7c3a2901389683241fe0f501966a3594c7bcbcc617eb101ebe3290bff96481ad,,UBERON:0001728,nasopharynx,UBERON,mapped,exact_label,,MONDO:0015459,nasopharyngeal carcinoma,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE206245,GSM6248648,Homo sapiens,Homo sapiens,unchanged,Nasopharynx,Nasopharynx,unmapped,Nasopharyngeal carcinoma,Nasopharyngeal carcinoma,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,,,missing,,,missing,39231979,39231979,unchanged,1939,17943,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,1982,uint8,NONE,1,PASS,2026-09-07T13:47:35.320725+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6248648,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE206245,releases/2026-09-17/samples/GSE206245/GSM6248648.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,22967444,17dbfe5d72629723822ee27504597feeb5e7176c6026a23ee24d33f8671f9168,136469746,9,False,True,2f4fd0bc0605124b2d2ca2ac5e7749cb93aa28d8aebcecb326e8dce726d156b6,84c01f2dd767883c6411e09485314849e5893002c314e5696315d84d2d9c58ff,,UBERON:0001728,nasopharynx,UBERON,mapped,exact_label,,MONDO:0015459,nasopharyngeal carcinoma,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
@@ -1658,10 +1658,6 @@ release_version,gse_id,gsm_id,organism,organism_raw,organism_status,tissue,tissu
 2026-09-17,GSE244650,GSM7823258,Mus musculus,Mus musculus,unchanged,heart,heart,unchanged,,,missing,,,missing,,,missing,,,missing,Wild type,Wild type,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24247,GPL24247,unchanged,H&E,H&E,unchanged,,,missing,40967223,40967223,unchanged,1009,31053,csr_matrix,int32,obsm/spatial,True,False,[],True,True,16684,16816,uint8,NONE,1,PASS,2026-09-07T11:19:04.045140+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7823258,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE244650,releases/2026-09-17/samples/GSE244650/GSM7823258.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,372999305,d85c494396e67911a31ebab6c42514f7ee8cc12ca391a84304a3cb4810d083a8,893281050,9,False,True,c4134c103baf82f543d77b32b59d40f898904bc74f0e8b89be88e425ad7e69d9,4aee3a778a3cf4a6605d22f73c7d9a232c054d63b60559228f91862f79344eae,,UBERON:0000948,heart,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 2026-09-17,GSE244650,GSM7823259,Mus musculus,Mus musculus,unchanged,heart,heart,unchanged,,,missing,,,missing,,,missing,,,missing,Apex resection,Apex resection,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24247,GPL24247,unchanged,H&E,H&E,unchanged,,,missing,40967223,40967223,unchanged,1431,31053,csr_matrix,int32,obsm/spatial,True,False,[],True,True,16503,16946,uint8,NONE,1,PASS,2026-09-06T00:41:49.249439+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7823259,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE244650,releases/2026-09-17/samples/GSE244650/GSM7823259.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,278383823,a06d4471c0b758783d608a33ff74baa80c227da362aeaafcfbea8ebae00dd17b,901882578,9,False,True,99cdc13fad3c02115531dae55598fc5077dbb81fbbfc8adccf6ee1767ab60633,8b54c7cb995f823f1f584aafe5e985b98635faf3adf541c9381e71ecb3173ee4,,UBERON:0000948,heart,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 2026-09-17,GSE244650,GSM7823260,Mus musculus,Mus musculus,unchanged,heart,heart,unchanged,,,missing,,,missing,,,missing,,,missing,Apex resection,Apex resection,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24247,GPL24247,unchanged,H&E,H&E,unchanged,,,missing,40967223,40967223,unchanged,1626,31053,csr_matrix,int32,obsm/spatial,True,False,[],True,True,16358,16851,uint8,NONE,1,PASS,2026-09-06T00:41:49.249439+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7823260,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE244650,releases/2026-09-17/samples/GSE244650/GSM7823260.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,264311653,4b94581f9be822543cfa27f4931e2420701b193219a60d53d5fe76f28221dd65,894391370,9,False,True,5ff84380464808375c15b3e712a0ae52cab4f3d3bdfb1c5efca51787220360c9,fc67b252b8f474527346a3c354be0c17759673d86fc16cd7297835367731af37,,UBERON:0000948,heart,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
-2026-09-17,GSE244723,GSM7825036,Homo sapiens,Homo sapiens,unchanged,embryonic heart,embryonic heart,unmapped,,,missing,,,missing,CS16,CS16,needs_review,,,missing,control,control,unchanged,Spatial Transcriptomics,Spatial Transcriptomics,needs_review,GPL24676,GPL24676,unchanged,H&E,H&E,unchanged,,,missing,38011284,38011284,unchanged,37,57486,array,int32,obsm/spatial,True,False,[],True,True,2432,2429,uint8,NONE,1,PASS,2026-09-06T02:37:43.623453+00:00,full-review-revision-110,True,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7825036,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE244723,releases/2026-09-17/samples/GSE244723/GSM7825036.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,6637186,2240b6870fbf29487d936d0cab8f7d538d5765d46dab0e64c2c0411c4caf91ab,21879670,9,False,True,c6c295fdd361bdf825ef68d0fcce76491cf551d9bf36801fd89c66656364b4a8,db4b6ac18d55e5a0df2927cfc6af524232ca2534791bc22f2acc4e0a7f27770b,,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
-2026-09-17,GSE244723,GSM7825037,Homo sapiens,Homo sapiens,unchanged,embryonic heart,embryonic heart,unmapped,,,missing,,,missing,CS16,CS16,needs_review,,,missing,control,control,unchanged,Spatial Transcriptomics,Spatial Transcriptomics,needs_review,GPL24676,GPL24676,unchanged,H&E,H&E,unchanged,,,missing,38011284,38011284,unchanged,61,57486,array,int32,obsm/spatial,True,False,[],True,True,2432,2429,uint8,NONE,1,PASS,2026-09-06T02:37:43.623453+00:00,full-review-revision-110,True,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7825037,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE244723,releases/2026-09-17/samples/GSE244723/GSM7825037.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,6862486,e5f55f64f5ab3567821083fb3eb1d7875a59a048ee4329427e68e4cfeb5b0b64,22032814,9,False,True,398d12ffb839a8ba2b9860fc0c5d6edaa717e80293e1d20b38ad6deff4eda277,5118920ada30f50eb5b546c6417305db0e0774fd7b078b9d14283fd35b1f57a2,,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
-2026-09-17,GSE244723,GSM7825038,Homo sapiens,Homo sapiens,unchanged,embryonic heart,embryonic heart,unmapped,,,missing,,,missing,CS16,CS16,needs_review,,,missing,control,control,unchanged,Spatial Transcriptomics,Spatial Transcriptomics,needs_review,GPL24676,GPL24676,unchanged,H&E,H&E,unchanged,,,missing,38011284,38011284,unchanged,59,57486,array,int32,obsm/spatial,True,False,[],True,True,2432,2429,uint8,NONE,1,PASS,2026-09-06T02:37:43.623453+00:00,full-review-revision-110,True,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7825038,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE244723,releases/2026-09-17/samples/GSE244723/GSM7825038.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,6775445,a391486d15429619712635acedd326fe4ac315079f8fcf17c2d3678f1f5e1ced,22043859,9,False,True,fcbd0b7b9798e292005ae6b158a8cf62a30a4e3025d783bcd48a2ff1fe328dc2,470af461c17629f705cb7ce135405fc963ed0d3504f41174577e0a863aff1be8,,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
-2026-09-17,GSE244723,GSM7825039,Homo sapiens,Homo sapiens,unchanged,embryonic heart,embryonic heart,unmapped,,,missing,,,missing,CS16,CS16,needs_review,,,missing,control,control,unchanged,Spatial Transcriptomics,Spatial Transcriptomics,needs_review,GPL24676,GPL24676,unchanged,H&E,H&E,unchanged,,,missing,38011284,38011284,unchanged,60,57486,array,int32,obsm/spatial,True,False,[],True,True,2432,2429,uint8,NONE,1,PASS,2026-09-06T02:37:43.623453+00:00,full-review-revision-110,True,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7825039,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE244723,releases/2026-09-17/samples/GSE244723/GSM7825039.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,6908707,6dbd4b3997b06c2bbd48b4e0a32798c76cffc7cd3f074d95be68559f398c52aa,22063619,9,False,True,d24fb9e9b8f7b27103b66f50ba5068702a952e11e53c841c8fbe6e37835b8914,0d81f38f7ed87c83b5fe88138f048e5a7789b931cde7b99cf83855f082d20b85,,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE245097,GSM7836297,Mus musculus,Mus musculus,unchanged,Tendon + injured area,Tendon + injured area,unmapped,,,missing,,,missing,12 weeks,12 weeks old,normalized,,,missing,Control (TrkA WT),Control (TrkA WT),unchanged,10x Genomics Visium,10x Visium,normalized,GPL24247,GPL24247,unchanged,,,missing,,,missing,38117901,38117901,unchanged,3047,32285,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,466,uint8,NONE,1,PASS,2026-09-06T02:37:43.623453+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7836297,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE245097,releases/2026-09-17/samples/GSE245097/GSM7836297.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,24829408,d9d907a16e29b87de3f3842317042477c5dc9820418955c11bc749b12bca8057,28203191,9,False,True,ea52464fe20e50eaf3f9d91e592c5a80e72ddaa380416534b9fb9be3f9557564,4daa805988719ff3dd52b236afab1b5c3b4d15e30dfb9d6bdf60f62b25eab9e9,,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 2026-09-17,GSE245097,GSM7836298,Mus musculus,Mus musculus,unchanged,Tendon + injured area,Tendon + injured area,unmapped,,,missing,,,missing,12 weeks,12 weeks old,normalized,,,missing,Control (TrkA WT),Control (TrkA WT),unchanged,10x Genomics Visium,10x Visium,normalized,GPL24247,GPL24247,unchanged,,,missing,,,missing,38117901,38117901,unchanged,2027,32285,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,466,uint8,NONE,1,PASS,2026-09-06T02:37:43.623453+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7836298,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE245097,releases/2026-09-17/samples/GSE245097/GSM7836298.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,18609636,feacf80df011c757f64c33b3eb457d0e88d9394f3145409af18b0cbf03c2283d,21467535,9,False,True,cf3e2f9071124748a0adaafd197decf7df3432e121e85f429429a537ba624831,4daa805988719ff3dd52b236afab1b5c3b4d15e30dfb9d6bdf60f62b25eab9e9,,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 2026-09-17,GSE245097,GSM7836299,Mus musculus,Mus musculus,unchanged,Tendon + injured area,Tendon + injured area,unmapped,,,missing,,,missing,12 weeks,12 weeks old,normalized,,,missing,1NMPP1 (TrkA F592A),1NMPP1 (TrkA F592A),unchanged,10x Genomics Visium,10x Visium,normalized,GPL24247,GPL24247,unchanged,,,missing,,,missing,38117901,38117901,unchanged,2837,32285,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,466,uint8,NONE,1,PASS,2026-09-06T02:37:43.623453+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7836299,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE245097,releases/2026-09-17/samples/GSE245097/GSM7836299.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,22030366,69d961a2bfc63e02c303deb263b8368a5bc19ab7c6db7668cba59b68d606c16d,25428432,9,False,True,c799755dc89b6a277ef1267e77f21c7ba7ff466f3cfa332036aed82bc1bcd5cf,4daa805988719ff3dd52b236afab1b5c3b4d15e30dfb9d6bdf60f62b25eab9e9,,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
@@ -2693,10 +2689,10 @@ release_version,gse_id,gsm_id,organism,organism_raw,organism_status,tissue,tissu
 2026-09-17,GSE274782,GSM8457842,Mus musculus,Mus musculus,unchanged,brain,Brain,normalized,,,missing,male,male,unchanged,57–72 weeks,57-72 weeks old,normalized,,,missing,sham,sham,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24247,GPL24247,unchanged,,,missing,,,missing,40888470,40888470,unchanged,1609,32285,csr_matrix,int64,obsm/spatial,True,False,[],True,True,1998,2000,uint8,LZW,1,PASS,2026-09-08T02:37:05.742388+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8457842,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE274782,releases/2026-09-17/samples/GSE274782/GSM8457842.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,16315218,7e98a5f9a53785329ad8e9ce7b72d3d4f7484c8bf64a96b64fda69e9a12e30e2,17836196,9,False,True,f607571578ee23970f371f401ef6613b329a8d302e61d88372b93f0223b1d50a,0d408954a70b5034d0190c2566f4f696d406eee5c7eed0e1b4acb6d81a1a3f3f,,UBERON:0000955,brain,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 2026-09-17,GSE274782,GSM8457843,Mus musculus,Mus musculus,unchanged,brain,Brain,normalized,,,missing,male,male,unchanged,57–72 weeks,57-72 weeks old,normalized,,,missing,iTBS,iTBS,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24247,GPL24247,unchanged,,,missing,,,missing,40888470,40888470,unchanged,1895,32285,csr_matrix,int64,obsm/spatial,True,False,[],True,True,1999,2000,uint8,LZW,1,PASS,2026-09-08T02:37:05.742388+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8457843,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE274782,releases/2026-09-17/samples/GSE274782/GSM8457843.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,22011801,c8605e3d2b18a2447e3ce717c915ac1bf0f65a80f8c7cfbb74887c38961ed942,23622653,9,False,True,84bf9950326ff61affb79de69f1064b4d586fb8466d1354c41f42c3470d21dbe,d985c192bad8882f9de273c8d24e5e85fe35f5148dec2f39666d349d826633b0,,UBERON:0000955,brain,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 2026-09-17,GSE274782,GSM8457844,Mus musculus,Mus musculus,unchanged,brain,Brain,normalized,,,missing,male,male,unchanged,57–72 weeks,57-72 weeks old,normalized,,,missing,cTBS,cTBS,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24247,GPL24247,unchanged,,,missing,,,missing,40888470,40888470,unchanged,2125,32285,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,2000,uint8,LZW,1,PASS,2026-09-08T02:37:05.742388+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8457844,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE274782,releases/2026-09-17/samples/GSE274782/GSM8457844.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,19447280,91529632092a28399a14ec9f973d04c9ecd8c2760780ad9c2bbab2a64e856a30,21008469,9,False,True,f76209564263b433d36b118155d5f7b4aee23220cb6330c796f8741964594009,83f047d652f4d33dee07df04a47c5ee1dc75e5c0f5c9361c1802ab492f9dceeb,,UBERON:0000955,brain,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
-2026-09-17,GSE275125,GSM8465980,Mus musculus,Mus musculus,unchanged,Lymph node,Lymph node,unmapped,,,missing,,,missing,,,missing,JLB6J8116,JLB6J8116,unchanged,,,missing,10x Genomics Visium,10x Visium,normalized,GPL30172,GPL30172,unchanged,H&E,H&E,unchanged,,,missing,,,missing,1650,32378,csr_matrix,int32,obsm/spatial,True,False,[],True,True,12000,12000,uint8,NONE,1,PASS,2026-09-06T02:45:57.470486+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8465980,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE275125,releases/2026-09-17/samples/GSE275125/GSM8465980.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,242325515,89ecccba5e0319b38d7634cfdd74fffb5b25ad4367d559b76099a0cd64e9e1c7,443998008,9,False,True,bfa3fa4e048d60f13867cabb2c2bbadea27ef35ef3709d528dd354e5e0234607,c9abd0c50a93e9b6e32a9e45183e911b07a41e50ef3da6569bbf3550a36e4ee0,,UBERON:0000029,lymph node,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
-2026-09-17,GSE275125,GSM8465981,Mus musculus,Mus musculus,unchanged,Lymph node,Lymph node,unmapped,,,missing,,,missing,,,missing,JLB6J8116,JLB6J8116,unchanged,,,missing,10x Genomics Visium,10x Visium,normalized,GPL30172,GPL30172,unchanged,H&E,H&E,unchanged,,,missing,,,missing,1876,32378,csr_matrix,int32,obsm/spatial,True,False,[],True,True,12000,12000,uint8,NONE,1,PASS,2026-09-06T02:45:57.470486+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8465981,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE275125,releases/2026-09-17/samples/GSE275125/GSM8465981.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,249031483,3e5deaa3b67b799cdd826855aa372378ab1823790e69057f7f63aede2f727e9f,444964513,9,False,True,a5a5c671e9ad1f8ebbb9d173f05d66ec71303bb55c24119507eda72b4f23683d,45a17f70c49bbd9d7d9242cb736893a68885184777700bbec67100d8d8ab4f3a,,UBERON:0000029,lymph node,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
-2026-09-17,GSE275125,GSM8465982,Mus musculus,Mus musculus,unchanged,Lymph node,Lymph node,unmapped,,,missing,,,missing,,,missing,JLB6J8116,JLB6J8116,unchanged,,,missing,10x Genomics Visium,10x Visium,normalized,GPL30172,GPL30172,unchanged,H&E,H&E,unchanged,,,missing,,,missing,1858,32378,csr_matrix,int32,obsm/spatial,True,False,[],True,True,12000,12000,uint8,NONE,1,PASS,2026-09-06T02:45:57.470486+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8465982,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE275125,releases/2026-09-17/samples/GSE275125/GSM8465982.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,224946786,4d2aa935e988da7d459ae0141da4dd51f8792a40da872f4bd6e009cf81a65947,444422384,9,False,True,2fd9f75d079498242d1caf0187788d3f9f57623a5bebe03b9a393db33556fcdc,73b9af637aca52ec0a5988fc08af5ee49726b749229f27892a6dff6e0a6b847e,,UBERON:0000029,lymph node,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
-2026-09-17,GSE275125,GSM8465983,Mus musculus,Mus musculus,unchanged,Lymph node,Lymph node,unmapped,,,missing,,,missing,,,missing,JLB6J8116,JLB6J8116,unchanged,,,missing,10x Genomics Visium,10x Visium,normalized,GPL30172,GPL30172,unchanged,H&E,H&E,unchanged,,,missing,,,missing,1887,32378,csr_matrix,int32,obsm/spatial,True,False,[],True,True,11811,11731,uint8,NONE,1,PASS,2026-09-06T02:45:57.470486+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8465983,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE275125,releases/2026-09-17/samples/GSE275125/GSM8465983.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,253890227,57d635939e210b8a4d55fe818806340695de15adfc705d02143e289c99ea070a,428594422,9,False,True,6c50360144623f829aacb30f11eb5cdf8b5007fa10f57c29a4bedea975ef7cef,57914f96b86b3ad573b853b251446f7c227d0868867a1822abca65719c652d0f,,UBERON:0000029,lymph node,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
+2026-09-17,GSE275125,GSM8465980,Mus musculus,Mus musculus,unchanged,Lymph node,Lymph node,unmapped,,,missing,,,missing,,,missing,JLB6J8116,JLB6J8116,unchanged,,,missing,10x Genomics Visium,10x Visium,normalized,GPL30172,GPL30172,unchanged,H&E,H&E,unchanged,,,missing,,,missing,1650,32378,csr_matrix,float64,obsm/spatial,True,False,[],True,True,12000,12000,uint8,ADOBE_DEFLATE,1,PASS,2026-11-11T06:16:34.459134+00:00,sda-unified-20261010-v3-patch-20261110/review_pack,False,False,A,PASS,EXPRESSION_EQUAL_TO_DEPOSIT_SDA_ALL_SCORER_1.7.0,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8465980,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE275125,releases/2026-09-17/samples/GSE275125/GSM8465980.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,289510655,042df74537ffb6088bfb2c15cca0967f7f32948b61de185e6484c290a653f80c,291965404,7,True,True,04a85724c1bf9daa4590c3eb681c75d711b59f29c8b8e15c917c5ab676794574,364d7eea0642b5752a455142bda7074ad7b38b90dbbd5d927a625ea97b54c222,TIFF,UBERON:0000029,lymph node,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
+2026-09-17,GSE275125,GSM8465981,Mus musculus,Mus musculus,unchanged,Lymph node,Lymph node,unmapped,,,missing,,,missing,,,missing,JLB6J8116,JLB6J8116,unchanged,,,missing,10x Genomics Visium,10x Visium,normalized,GPL30172,GPL30172,unchanged,H&E,H&E,unchanged,,,missing,,,missing,1876,32378,csr_matrix,float64,obsm/spatial,True,False,[],True,True,12000,12000,uint8,ADOBE_DEFLATE,1,PASS,2026-11-11T06:16:34.459134+00:00,sda-unified-20261010-v3-patch-20261110/review_pack,False,False,A,PASS,EXPRESSION_EQUAL_TO_DEPOSIT_SDA_ALL_SCORER_1.7.0,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8465981,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE275125,releases/2026-09-17/samples/GSE275125/GSM8465981.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,299496220,ce4d255f077c3c883ec6e2bf727298023dfcfddc1e0996cf5e1ca21b42071a5e,301897454,7,True,True,9aced3f1cd2f0724e0bf2f4fea2fb2fddc1b4e9694126c9e6c2bc4ad5a784f84,28bcfb143f512e2f14af53d27f19a72870f8d85ce51240be37e34814544a0a72,TIFF,UBERON:0000029,lymph node,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
+2026-09-17,GSE275125,GSM8465982,Mus musculus,Mus musculus,unchanged,Lymph node,Lymph node,unmapped,,,missing,,,missing,,,missing,JLB6J8116,JLB6J8116,unchanged,,,missing,10x Genomics Visium,10x Visium,normalized,GPL30172,GPL30172,unchanged,H&E,H&E,unchanged,,,missing,,,missing,1858,32378,csr_matrix,float64,obsm/spatial,True,False,[],True,True,12000,12000,uint8,ADOBE_DEFLATE,1,PASS,2026-11-11T06:16:34.459134+00:00,sda-unified-20261010-v3-patch-20261110/review_pack,False,False,A,PASS,EXPRESSION_EQUAL_TO_DEPOSIT_SDA_ALL_SCORER_1.7.0,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8465982,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE275125,releases/2026-09-17/samples/GSE275125/GSM8465982.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,263595601,fa5c230732803d539b6b0dd6f3a777a69da19067e7974548c185198a33b35980,266033871,7,True,True,1c5fd215f39d0c9fa486c5472f4f18a707c8733f53e34692922b8f0f37257ecf,3645bce316439716b211c9df58dcfa9615a9dc97c87786fd9b879591cb7eba03,TIFF,UBERON:0000029,lymph node,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
+2026-09-17,GSE275125,GSM8465983,Mus musculus,Mus musculus,unchanged,Lymph node,Lymph node,unmapped,,,missing,,,missing,,,missing,JLB6J8116,JLB6J8116,unchanged,,,missing,10x Genomics Visium,10x Visium,normalized,GPL30172,GPL30172,unchanged,H&E,H&E,unchanged,,,missing,,,missing,1887,32378,csr_matrix,float64,obsm/spatial,True,False,[],True,True,11811,11731,uint8,ADOBE_DEFLATE,1,PASS,2026-11-11T06:16:34.459134+00:00,sda-unified-20261010-v3-patch-20261110/review_pack,False,False,A,PASS,EXPRESSION_EQUAL_TO_DEPOSIT_SDA_ALL_SCORER_1.7.0,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8465983,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE275125,releases/2026-09-17/samples/GSE275125/GSM8465983.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,263500411,399c6daa889443cae8002615b5e897ad750bcb185d1e839fcaa7c7cc1082d689,265907923,7,True,True,3fea4ca174814da76a1621fb1c9be03fa220cf8d3fd631936a867a1822572e11,6d700f11df6d8dc0565fd11bca4e6d0a7f853e22eeedb9da86c310764cf7de4a,TIFF,UBERON:0000029,lymph node,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 2026-09-17,GSE275131,GSM8471249,Mus musculus,Mus musculus,unchanged,brain,Brain,normalized,,,missing,female,female,unchanged,,,missing,,,missing,Control (DMSO; 0.11 ul/hour infusion rate) - WT,Control (DMSO; 0.11 ul/hour infusion rate) - WT,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24247,GPL24247,unchanged,,,missing,10.1016/j.neuropharm.2026.110835,10.1016/j.neuropharm.2026.110835,unchanged,41539386,41539386,unchanged,2934,32285,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,1992,uint8,LZW,1,PASS,2026-09-06T02:45:57.470486+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8471249,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE275131,releases/2026-09-17/samples/GSE275131/GSM8471249.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,26720217,8a70b1b0bdcb7941d12fdb463ab108c1b8c17bbbdd08946e4c82791bac07fe82,141724634,9,False,True,c0e6c1dd89fd12d2ad94800e61ad39495e101098f4ee908eb259d16547dd42ab,6c137acc25d435ea9ed8f6285f67e9bc6c3ac6e9b32584bd4f0ed2fd685258a6,,UBERON:0000955,brain,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 2026-09-17,GSE275131,GSM8471250,Mus musculus,Mus musculus,unchanged,brain,Brain,normalized,Alzheimer's disease,Alzheimer's disease,unchanged,female,female,unchanged,,,missing,,,missing,Control (DMSO; 0.11 ul/hour infusion rate) - 3xTg,Control (DMSO; 0.11 ul/hour infusion rate) - 3xTg,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24247,GPL24247,unchanged,,,missing,10.1016/j.neuropharm.2026.110835,10.1016/j.neuropharm.2026.110835,unchanged,41539386,41539386,unchanged,3080,32285,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,1863,uint8,LZW,1,PASS,2026-09-06T02:45:57.470486+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8471250,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE275131,releases/2026-09-17/samples/GSE275131/GSM8471250.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,25668444,3aabb2e51b1bdf478a5bbc6709be06f51ff82dde3be1e36d939a324868b98319,142195869,9,False,True,e4ac4361e1dff45948ed74aa0a999b247d7a9f3d7355ac99a675823ce2b8e849,b230e47f5c2f21be9eaaf6eefcfdc062c39ebb0a3b6104957b3cf4b038d304c2,,UBERON:0000955,brain,UBERON,mapped,exact_label,,MONDO:0004975,Alzheimer disease,MONDO,mapped,exact_synonym,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 2026-09-17,GSE275131,GSM8471251,Mus musculus,Mus musculus,unchanged,brain,Brain,normalized,,,missing,female,female,unchanged,,,missing,,,missing,Stearoyl-CoA desaturase inhibitor (SCDi; 80 uM) - WT,Stearoyl-CoA desaturase inhibitor (SCDi; 80 uM) - WT,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24247,GPL24247,unchanged,,,missing,10.1016/j.neuropharm.2026.110835,10.1016/j.neuropharm.2026.110835,unchanged,41539386,41539386,unchanged,2789,32285,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,1893,uint8,LZW,1,PASS,2026-09-06T02:45:57.470486+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8471251,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE275131,releases/2026-09-17/samples/GSE275131/GSM8471251.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,25098843,5a8a18dcf0f65a2bb86441eb13c9d6709acbe7fb24dce56771f078453e65b625,136601915,9,False,True,ffccc15927a8c7cf7c2d88f27088e90c8bf723611bb9ae451341bbee75197f63,e8d13efe662ded18ea6eb37a29256c13a918ddbee42743a92ad604da1930976b,,UBERON:0000955,brain,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
@@ -3476,7 +3472,7 @@ release_version,gse_id,gsm_id,organism,organism_raw,organism_status,tissue,tissu
 2026-09-17,GSE294844,GSM8925218,human skin metagenome,human skin metagenome,unmapped,skin,skin,unchanged,actinic keratosis,actinic keratosis,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium v2 CytAssist Spatial Gene Expression,Visium v2 CytAssist Spatial Gene Expression,normalized,GPL35769,GPL35769,unchanged,,,missing,,,missing,,,missing,1706,18085,csr_matrix,int32,obsm/spatial,True,False,[],True,True,3000,3000,uint8,DEFLATE,1,PASS,2026-09-06T02:28:28.511102+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8925218,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294844,releases/2026-09-17/samples/GSE294844/GSM8925218.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,31748762,8c639a861913484e6d74ac1df7f357f77b4f2b76ae1d2bc678d292173b60a8aa,67682784,9,False,True,f08e8b8910db704b81ac4370da1f87492af02b4125defaf28a5cd194399cd503,ad0f8dbff97534ffc6644a3a9800f8dfa02286a8fd8ccfe28b34729fb716c67c,,UBERON:0000014,zone of skin,UBERON,mapped,exact_synonym,,MONDO:0005173,actinic keratosis,MONDO,mapped,exact_label,,NCBITaxon:539655,human skin metagenome,mapped,exact_scientific_name
 2026-09-17,GSE294844,GSM8925219,human skin metagenome,human skin metagenome,unmapped,skin,skin,unchanged,actinic keratosis,actinic keratosis,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium v2 CytAssist Spatial Gene Expression,Visium v2 CytAssist Spatial Gene Expression,normalized,GPL35769,GPL35769,unchanged,,,missing,,,missing,,,missing,921,18085,csr_matrix,int32,obsm/spatial,True,False,[],True,True,3000,3000,uint8,DEFLATE,1,PASS,2026-09-06T02:28:28.511102+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8925219,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294844,releases/2026-09-17/samples/GSE294844/GSM8925219.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,30476481,1a474dc168c400f210bc313522368040f1b3c38fabd3bb23fce4ba78401be577,62830573,9,False,True,98d9177886d4e97f71f6003a92cb1da9f57f076a2f11abbb36769165766eeaf8,9e43ca2464196810062a4ec3e566b8865fffa46353d58a920cf17b40847cbbb3,,UBERON:0000014,zone of skin,UBERON,mapped,exact_synonym,,MONDO:0005173,actinic keratosis,MONDO,mapped,exact_label,,NCBITaxon:539655,human skin metagenome,mapped,exact_scientific_name
 2026-09-17,GSE294844,GSM8925221,human skin metagenome,human skin metagenome,unmapped,skin,skin,unchanged,actinic keratosis,actinic keratosis,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium v2 CytAssist Spatial Gene Expression,Visium v2 CytAssist Spatial Gene Expression,normalized,GPL35769,GPL35769,unchanged,,,missing,,,missing,,,missing,2289,18085,csr_matrix,int32,obsm/spatial,True,False,[],True,True,3000,3000,uint8,DEFLATE,1,PASS,2026-09-06T02:28:28.511102+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8925221,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294844,releases/2026-09-17/samples/GSE294844/GSM8925221.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,29461140,a7ad0e1dd7d9307d1174007fc4d41b69305f2bf8d72379d06896887a163806ad,49178919,9,False,True,38a5e9ba2aa8b3072a636f50bfc8305b7299973ce0f9b46c7037ac8fac6a01fb,cbf119266bad8d42003e2d6e8ddfe38cbc5b481e97fff1f0dadff40cb3b369f9,,UBERON:0000014,zone of skin,UBERON,mapped,exact_synonym,,MONDO:0005173,actinic keratosis,MONDO,mapped,exact_label,,NCBITaxon:539655,human skin metagenome,mapped,exact_scientific_name
-2026-09-17,GSE294965,GSM8933093,Homo sapiens,Homo sapiens,unchanged,kidney,kidney,unchanged,,,missing,,,missing,,,missing,,,missing,,,missing,10x Genomics Xenium In Situ,Xenium In Situ Analyzer,normalized,GPL33762,GPL33762,unchanged,,,missing,10.1101/2024.12.18.629206,10.1101/2024.12.18.629206,unchanged,40393992,40393992,unchanged,317414,541,csr_matrix,int32,"obs/x,obs/y",True,False,[],True,True,2709,5440,uint8,NONE,1,PASS,2026-09-06T01:40:38.814413+00:00,full-review-revision-110,False,False,B,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8933093,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294965,releases/2026-09-17/samples/GSE294965/GSM8933093.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,65641433,99c0ad6951955397dea89b053ffe5e7709adf6b37e69a761bd0d18d6abcba695,97001606,9,False,True,bfb93f7acef88ea54656ec0ea4c5504230905080e884dad0be76403281768407,e476f87ee1dc9f4fc10ccdaaceca349a5fde63e74092ad34e5744ef8bd598a20,,UBERON:0002113,kidney,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
+2026-09-17,GSE294965,GSM8933093,Homo sapiens,Homo sapiens,unchanged,kidney,kidney,unchanged,,,missing,,,missing,,,missing,,,missing,,,missing,10x Genomics Xenium In Situ,Xenium In Situ Analyzer,normalized,GPL33762,GPL33762,unchanged,,,missing,10.1101/2024.12.18.629206,10.1101/2024.12.18.629206,unchanged,40393992,40393992,unchanged,317414,541,csr_matrix,int32,obsm/spatial,True,False,[],True,True,23032,46248,uint16,ADOBE_DEFLATE,1,PASS,2026-11-11T06:16:34.459134+00:00,sda-unified-20261010-v3-patch-20261110/review_pack,False,False,B,PASS,EXPRESSION_EQUAL_TO_DEPOSIT_SDA_ALL_SCORER_1.7.0,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8933093,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294965,releases/2026-09-17/samples/GSE294965/GSM8933093.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,717146914,56f8075dd844b495717e92b7bba33df39a710dd78b31f88ee2ebd6e9e36a3518,735340134,7,True,True,947e79a902b057d9e0d2752d0ff66ec50a16d4c9e718f177af9e55d08fd5f021,93f170f7d2fb6d2e66e30487acea741b1810b00934c98f800a88aac7fb3c1326,TIFF,UBERON:0002113,kidney,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE295043,GSM8941069,Mus musculus,Mus musculus,unchanged,prostate,prostate,unmapped,,,missing,male,male,unchanged,,,missing,,,missing,Castracted D10,Castracted D10,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24247,GPL24247,unchanged,,,missing,,,missing,40974890,40974890,unchanged,1980,19465,csr_matrix,int32,obsm/spatial,True,False,[],True,True,2000,1912,uint8,LZW,1,PASS,2026-09-06T02:49:32.565650+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8941069,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE295043,releases/2026-09-17/samples/GSE295043/GSM8941069.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,33094542,b43ea4e8d4511523d5ea3a27d1b218cd563dd5636a61a856b84775fd136eb52e,37288198,9,False,True,231eace8caa50246dae9f72b514d57c8567ab43518ca865fb15b92f07c2d20bc,0a9c65778762e6258c14f001a5c2a83797d7d0a6a994b794d38ab7ede88cf897,,UBERON:0002367,prostate gland,UBERON,mapped,exact_synonym,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 2026-09-17,GSE295043,GSM8941070,Mus musculus,Mus musculus,unchanged,prostate,prostate,unmapped,,,missing,male,male,unchanged,,,missing,,,missing,Castracted D10,Castracted D10,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24247,GPL24247,unchanged,,,missing,,,missing,40974890,40974890,unchanged,2385,19465,csr_matrix,int32,obsm/spatial,True,False,[],True,True,1990,2000,uint8,LZW,1,PASS,2026-09-08T02:42:34.409830+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8941070,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE295043,releases/2026-09-17/samples/GSE295043/GSM8941070.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,36707596,c21619bfe398ad10db2f4cc36cf22a1979c8149fd5aba9ca4a0c95e7ef286eaf,40159967,9,False,True,9d6e0e4a9e448ca7ab7159e58591577c9264d1cc4ce936049d48c461433e5986,be001deef68886050105033ce645bc8507efab54d846f5e7e2b9a8e561f4683a,,UBERON:0002367,prostate gland,UBERON,mapped,exact_synonym,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 2026-09-17,GSE295043,GSM8941071,Mus musculus,Mus musculus,unchanged,prostate,prostate,unmapped,,,missing,male,male,unchanged,,,missing,,,missing,Castracted D10,Castracted D10,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24247,GPL24247,unchanged,,,missing,,,missing,40974890,40974890,unchanged,2363,19465,csr_matrix,int32,obsm/spatial,True,False,[],True,True,2000,1947,uint8,LZW,1,PASS,2026-09-08T02:42:34.409830+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8941071,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE295043,releases/2026-09-17/samples/GSE295043/GSM8941071.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,37904538,2f08290c16b82879c1e9902cb451d50ad65fe135ba826d0ad09c35e02925630f,42327732,9,False,True,073ae824605ca32579da8f3f598fb8745e1a9c6ee337083750d10bb918f56426,ba34fa4b17cedc67cfd657ffc23cb1be22fd299a0ba749ef8b1d7a8a44848ea9,,UBERON:0002367,prostate gland,UBERON,mapped,exact_synonym,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
@@ -3593,8 +3589,6 @@ release_version,gse_id,gsm_id,organism,organism_raw,organism_status,tissue,tissu
 2026-09-17,GSE297119,GSM8984117,Mus musculus,Mus musculus,unchanged,periosteum,periosteum,unmapped,,,missing,,,missing,,,missing,,,missing,d15,d15,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24247,GPL24247,unchanged,,,missing,,,missing,40483363,40483363,unchanged,7260,19465,csr_matrix,int32,obsm/spatial,True,False,[],True,True,1785,2000,uint8,NONE,1,PASS,2026-09-06T02:54:12.053096+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8984117,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE297119,releases/2026-09-17/samples/GSE297119/GSM8984117.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,77296543,c89b34ab4e1dbe3df73650e8c201b684173efac602b308154a73df17b720af64,333290204,9,False,True,80aff939bc5ad709ad728cca8a00d2de1f42cc1e80911aad3cb6a08ef27fe00b,f6b30b1361424cad861cf409f50b5566c83eea051644207f2b9c3bde49f0e470,,UBERON:0002515,periosteum,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 2026-09-17,GSE297621,GSM8995843,Mus musculus,Mus musculus,unchanged,lung,lung,unchanged,,,missing,,,missing,,,missing,,,missing,"Atg7 WT (Atg7fl/fl LysM-Cre-/-), NTM infection","Atg7 WT (Atg7fl/fl LysM-Cre-/-), NTM infection",unchanged,10x Genomics Visium,10x Visium,normalized,GPL24247,GPL24247,unchanged,H&E,H&E,unchanged,,,missing,40730835,40730835,unchanged,3170,19465,csr_matrix,int64,obsm/spatial,True,False,[],True,True,1902,2000,uint8,NONE,1,PASS,2026-09-06T02:49:32.565650+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8995843,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE297621,releases/2026-09-17/samples/GSE297621/GSM8995843.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,33183440,fa7d808939afe013bf835c641244a0e8a9e0ff129241ee25caf7e413749e7864,192658045,9,False,True,3e55946abdf6ba7d56f9a29bf37505dbe8e3aedd35dc89ca6608951972c9b9df,43ff6f5a119ef58ac2521bd0128a821956fb277d0fa057b0ba0297edb3498d0d,,UBERON:0002048,lung,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 2026-09-17,GSE297621,GSM8995844,Mus musculus,Mus musculus,unchanged,lung,lung,unchanged,,,missing,,,missing,,,missing,,,missing,"Atg7 cKO (Atg7fl/fl LysM-Cre+/+), NTM infection","Atg7 cKO (Atg7fl/fl LysM-Cre+/+), NTM infection",unchanged,10x Genomics Visium,10x Visium,normalized,GPL24247,GPL24247,unchanged,H&E,H&E,unchanged,,,missing,40730835,40730835,unchanged,3801,19465,csr_matrix,int64,obsm/spatial,True,False,[],True,True,1967,2000,uint8,NONE,1,PASS,2026-09-06T02:49:32.565650+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8995844,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE297621,releases/2026-09-17/samples/GSE297621/GSM8995844.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,37429384,ccac5ca87c2b0668d42c9eaae97abfbea4e70ee026e5e4844e020042f769aa61,220622893,9,False,True,58682f30ad4bbcfed5d00c74072334f06edb3434790ead6e3bc9c7dd206bef26,80faa84025240aeabb31426260e959a0bc7ca8e27f94612778a3126ca414789b,,UBERON:0002048,lung,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
-2026-09-17,GSE298115,GSM9008651,Mus musculus,Mus musculus,unchanged,parathyroid,parathyroid,unmapped,,,missing,male,male,unchanged,,,missing,,,missing,WT,WT,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24247,GPL24247,unchanged,,,missing,,,missing,41025096,41025096,unchanged,230,19465,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,2000,uint8,LZW,1,PASS,2026-09-06T01:17:01.779861+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9008651,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE298115,releases/2026-09-17/samples/GSE298115/GSM9008651.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,13529187,19149b60e2f8c11653a31bb03036820c40f9dc048110ba7598add75dcd5e950d,15623500,9,False,True,d5d238881ced1511f73f59b525d97b3d74d9256f41a5d44dd2d9642f1f7d4f8a,407d96fed8fbd000832935c9ebfd9fc633c414b91db3e97fe346e77e1f97d8c5,,UBERON:0001132,parathyroid gland,UBERON,mapped,exact_synonym,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
-2026-09-17,GSE298115,GSM9008653,Mus musculus,Mus musculus,unchanged,parathyroid,parathyroid,unmapped,,,missing,male,male,unchanged,,,missing,,,missing,Gcm2 variant p.Y392S,Gcm2 variant p.Y392S,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24247,GPL24247,unchanged,,,missing,,,missing,41025096,41025096,unchanged,971,19465,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,2000,uint8,LZW,1,PASS,2026-09-08T02:43:05.720902+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9008653,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE298115,releases/2026-09-17/samples/GSE298115/GSM9008653.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,24703383,fca2d14bf894f7c0b196c28b0dfb0b25aada793eaa356ea300ba650b05d2cd92,28259305,9,False,True,7b56897ddace6040991c9cf85603ff56f2b502323e01b1a85d28bbb3feb4509b,5619151ef56aae1afd6cc9780ab2f790c1d4bec267abfd746d4e5aa1e16960b3,,UBERON:0001132,parathyroid gland,UBERON,mapped,exact_synonym,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 2026-09-17,GSE298286,GSM9011362,Homo sapiens,Homo sapiens,unchanged,Bone metastatic breast tumor,Bone metastatic breast tumor,unmapped,metastatic breast cancer,metastatic breast cancer,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,,,missing,,,missing,41734374,41734374,unchanged,3186,18085,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,1814,uint8,LZW,1,PASS,2026-09-08T02:43:05.720902+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9011362,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE298286,releases/2026-09-17/samples/GSE298286/GSM9011362.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,14364629,4ce2e54fedb78085dc6480047642c392f1bedb56ae34d1ec83acc0903bb710ab,16264125,9,False,True,7a979bc6193141e7aae55d2f3aeee03cc4a27b235d7210c2a338597764f66e9f,de56e14fb60ed55f63625cd4ee97ea0f8de271fd2ae743b47c49cc7aab41c08e,,,,,unmapped,,,,,,unmapped,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE298286,GSM9011363,Homo sapiens,Homo sapiens,unchanged,Bone metastatic breast tumor,Bone metastatic breast tumor,unmapped,metastatic breast cancer,metastatic breast cancer,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,,,missing,,,missing,41734374,41734374,unchanged,1567,18085,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,1369,uint8,LZW,1,PASS,2026-09-08T02:44:05.747668+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9011363,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE298286,releases/2026-09-17/samples/GSE298286/GSM9011363.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,8135899,4fa7465097faf4c3acdeb8b5455dd24bec13481e7e699f35c50dad8d5e831b84,9903041,9,False,True,86ed72dec8e7baf2bb4ad45fd3961051f32bae65106bd897bd9d679f59c4f9ee,594fca1d5563c552fe453d5d34b433b760ec43343205e633d6b536101409c4a1,,,,,unmapped,,,,,,unmapped,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE298286,GSM9011364,Homo sapiens,Homo sapiens,unchanged,Bone metastatic breast tumor,Bone metastatic breast tumor,unmapped,metastatic breast cancer,metastatic breast cancer,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,,,missing,,,missing,41734374,41734374,unchanged,1703,18085,csr_matrix,int64,obsm/spatial,True,False,[],True,True,1539,2000,uint8,LZW,1,PASS,2026-09-08T02:44:05.747668+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9011364,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE298286,releases/2026-09-17/samples/GSE298286/GSM9011364.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,25328184,b4f3899f591861ed32b66fc05d943556066b0f59ccd1d0f8fcc95e070f0b4ba2,30027207,9,False,True,f237d3f008439bf77fadd95d48a11bb5976f788318b00c509e4e07508160f16c,cdf96f5824957079a6f7e5061d3327e1fc49e92ccac7151abb575e8b50d4bcd1,,,,,unmapped,,,,,,unmapped,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name

releases/2026-09-17/catalog.parquet

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:db225c0a3ea06596446edb3c017291000da14522847674b04d24036acefba31b
-size 1353464
+oid sha256:adb2c1044352a5de213b958f35669f2cf715a73147999c98382538839738ab49
+size 799890

releases/2026-09-17/metadata_coverage.json

@@ -1,110 +1,110 @@
 {
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+    "present": 4691,
     "missing": 0,
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       "needs_review": 8
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   "tissue": {
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+    "present": 4691,
     "missing": 0,
     "statuses": {
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+      "unmapped": 2349,
       "unchanged": 1352,
       "normalized": 990
     }
   },
   "disease": {
     "present": 2403,
-    "missing": 2294,
+    "missing": 2288,
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       "unmapped": 1257,
       "unchanged": 900,
       "normalized": 246
     }
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   "sex": {
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-    "missing": 3248,
+    "present": 1447,
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       "normalized": 774,
-      "unchanged": 675
+      "unchanged": 673
     }
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   "age": {
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-    "missing": 3057,
+    "present": 1636,
+    "missing": 3055,
     "statuses": {
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       "normalized": 498,
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     }
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   "donor_id": {
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+    "present": 3533,
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+    "present": 2335,
+    "missing": 2356,
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+      "unchanged": 3860,
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releases/2026-09-17/ontology_mapping.csv

@@ -1658,10 +1658,6 @@ GSM7823257,UBERON:0000948,heart,UBERON,mapped,exact_label,,,,,missing_source_val
 GSM7823258,UBERON:0000948,heart,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 GSM7823259,UBERON:0000948,heart,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 GSM7823260,UBERON:0000948,heart,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
-GSM7825036,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
-GSM7825037,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
-GSM7825038,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
-GSM7825039,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM7836297,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 GSM7836298,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 GSM7836299,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
@@ -3593,8 +3589,6 @@ GSM8984116,UBERON:0002515,periosteum,UBERON,mapped,exact_label,,,,,missing_sourc
 GSM8984117,UBERON:0002515,periosteum,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 GSM8995843,UBERON:0002048,lung,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 GSM8995844,UBERON:0002048,lung,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
-GSM9008651,UBERON:0001132,parathyroid gland,UBERON,mapped,exact_synonym,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
-GSM9008653,UBERON:0001132,parathyroid gland,UBERON,mapped,exact_synonym,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 GSM9011362,,,,unmapped,,,,,,unmapped,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM9011363,,,,unmapped,,,,,,unmapped,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM9011364,,,,unmapped,,,,,,unmapped,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name

releases/2026-09-17/ontology_mapping.parquet

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:9a218a1ded04061f94d6854a97071b3377232293c302a641fa60fd8570ea906a
-size 58906
+oid sha256:2f714ca55f045e75daa4809fcca65aa60521f7da2600b36c56a00460f986b5bc
+size 58803

releases/2026-09-17/ontology_mapping_summary.json

@@ -2,7 +2,7 @@
   "schema_version": "hesrt-ontology-mapping-v1",
   "input_catalog": "/cwStorage/home/jijh/projects/spatial-data-agent/standardized_data/releases/hesrt-hf-20260917-v1/public/releases/2026-09-17/catalog.parquet",
   "input_catalog_sha256": "8f654bd534261c1e22b2aedb37b4ca5a0d3f71ad04c9ad69737d0d63821a46ac",
-  "samples": 4697,
+  "samples": 4691,
   "ontologies": {
     "UBERON": {
       "data_version": "releases/2026-06-19",
@@ -31,25 +31,25 @@
   },
   "coverage": {
     "tissue": {
-      "mapped": 3025,
-      "unmapped": 1672
+      "mapped": 3023,
+      "unmapped": 1668
     },
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       "ambiguous": 4
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     "organism": {
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+      "mapped": 4688,
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     }
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   "match_types": {
     "tissue": {
       "exact_label": 2136,
-      "exact_synonym": 465,
+      "exact_synonym": 463,
       "curated_anatomy_phrase": 424
     },
     "disease": {
@@ -63,7 +63,7 @@
       "ambiguous_exact": 4
     },
     "organism": {
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+      "exact_scientific_name": 4683,
       "multi_taxon_exact": 5
     }
   },
@@ -73,6 +73,6 @@
     "original_columns_bytewise_dataframe_equal": true,
     "original_values_overwritten": false
   },
-  "release_tag": "2026-09-17-v1.4",
-  "input_catalog_note": "input_catalog and input_catalog_sha256 describe the 4,468-row catalog mapped on 2026-09-18; the 229 rows added in 2026-09-17-v1.4 were mapped with the same frozen ontology files and the same rules"
+  "release_tag": "2026-09-17-v1.5",
+  "input_catalog_note": "input_catalog and input_catalog_sha256 describe the 4,468-row catalog mapped on 2026-09-18; the 229 rows added in 2026-09-17-v1.4 were mapped with the same frozen ontology files and the same rules; 2026-09-17-v1.5 removed 6 rows and left the ontology columns of every remaining row unchanged"
 }

releases/2026-09-17/ontology_mapping_validation.json

@@ -1,12 +1,12 @@
 {
   "status": "VERIFIED",
-  "samples": 4697,
+  "samples": 4691,
   "original_columns_preserved": 80,
   "new_columns": 16,
-  "tissue_mapped": 3025,
+  "tissue_mapped": 3023,
   "disease_mapped": 1896,
   "disease_control_or_non_disease": 105,
-  "organism_mapped": 4694,
+  "organism_mapped": 4688,
   "source_validated_aliases": {
     "MS": [
       "GSE174647",

releases/2026-09-17/ontology_unresolved_terms.csv

@@ -230,7 +230,6 @@ tissue,breast tissue,unmapped,4
 tissue,colorectal tissue,unmapped,4
 tissue,diaphragm E14.5,unmapped,4
 tissue,diaphragm E18.5,unmapped,4
-tissue,embryonic heart,unmapped,4
 tissue,human breast cancer,unmapped,4
 tissue,lung organoid,unmapped,4
 tissue,lung tissue,unmapped,4

releases/2026-09-17/packages.json

@@ -1981,8 +1981,8 @@
   },
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-    "sha256": "a2fff7224eee50ea7c701fdc3ac3fd1ed49ea6de462f5d7d1f6d8f7e7f5aa675"
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+    "sha256": "6f604805551aeb0b98397b1488a4a45ea0dcb5534be3633600c413b8e01c19ee"
   },
   {
     "path": "releases/2026-09-17/samples/GSE186818/GSM5661565.tar.zst",
@@ -5056,33 +5056,33 @@
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@@ -17311,8 +17291,8 @@
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releases/2026-09-17/release.json

@@ -1,31 +1,31 @@
 {
   "version": "2026-09-17",
   "status": "PUBLISHED",
-  "samples": 4697,
-  "studies": 535,
-  "observations": 54921403,
-  "compressed_bytes": 425548154568,
-  "uncompressed_bytes": 668913801315,
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+  "studies": 533,
+  "observations": 54925797,
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-  "roundtrip_verified_packages": 231,
-  "matrix_image_transformation": "none; byte-identical lossless packaging",
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+  "matrix_image_transformation": "none during packaging (byte-identical lossless packaging); 12 packages were converted again from the GEO deposit in 2026-09-17-v1.5",
   "published_at": "2026-09-18T02:57:13.346496+00:00",
   "repo_id": "Biogod/HESRT",
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-  "documentation_version": "2026-11-11-v1.4",
-  "preview_samples": 9,
-  "payload_integrity_check": "All 4697 remote LFS SHA256 values and sizes match packages.json",
+  "payload_verified_commit": "f8eaa82c7222da379ba847d4632f115f13fe46bf",
+  "documentation_version": "2026-11-11-v1.5",
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+  "payload_integrity_check": "All 4691 remote LFS SHA256 values and sizes match packages.json",
   "metadata_ontology_mapping": {
     "schema_version": "hesrt-ontology-mapping-v1",
     "catalog_columns": 96,
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     "disease_control_or_non_disease": 105,
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-  "updated_at": "2026-11-11T05:34:21.688622+00:00",
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+  "updated_at": "2026-11-11T10:58:33.124248+00:00",
   "additions": [
     {
       "tag": "2026-09-17-v1.4",
@@ -37,5 +37,73 @@
       "reviewed_at_max": "2026-09-12T03:43:50.162002+00:00",
       "note": "Samples that passed the same human visual review on 10-12 September 2026, after the sample list of the first packaging run was fixed. Existing packages are unchanged."
     }
+  ],
+  "corrections": [
+    {
+      "tag": "2026-09-17-v1.5",
+      "date": "2026-11-11",
+      "check": "every released expression value and coordinate compared with the GEO deposit (readers of sda-all-scorer-1.7.0)",
+      "replaced": [
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+          "gsm_ids": [
+            "GSM6896311",
+            "GSM6896312",
+            "GSM6896313",
+            "GSM6896314",
+            "GSM6896315",
+            "GSM6896316"
+          ],
+          "reason": "expression values and gene names were written by the conversion script instead of the deposited counts"
+        },
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+          "gsm_ids": [
+            "GSM8465980",
+            "GSM8465981",
+            "GSM8465982",
+            "GSM8465983"
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+          "reason": "expression values and gene names were written by the conversion script instead of the deposited counts"
+        },
+        {
+          "gse_id": "GSE294965",
+          "gsm_ids": [
+            "GSM8933093"
+          ],
+          "reason": "cell positions were drawn at random inside the image instead of the deposited cell positions"
+        },
+        {
+          "gse_id": "GSE186290",
+          "gsm_ids": [
+            "GSM5643203"
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+          "reason": "deposited counts were stored in the wrong row order, so each spot carried the counts of another spot"
+        }
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+        {
+          "gse_id": "GSE298115",
+          "gsm_ids": [
+            "GSM9008651",
+            "GSM9008653"
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+          "reason": "deposited counts were stored in the wrong row order, and the spot positions are not in the pixel frame of the deposited image (no scale-factor file was deposited), so image and spots cannot be aligned"
+        },
+        {
+          "gse_id": "GSE244723",
+          "gsm_ids": [
+            "GSM7825036",
+            "GSM7825037",
+            "GSM7825038",
+            "GSM7825039"
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+          "reason": "the deposited count tables have no gene names, so the features cannot be identified"
+        }
+      ],
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+      "withdrawn_samples": 6,
+      "note": "Replaced packages were converted again from the GEO deposit, checked value by value against it and passed human visual review on 2026-11-11. Withdrawn packages remain reachable through the earlier tags and should not be used."
+    }
   ]
 }

releases/2026-09-17/studies.csv

@@ -63,7 +63,7 @@ GSE203424,12,34033,Mus musculus,10x Genomics Visium,,36448627,https://www.ncbi.n
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 GSE205307,2,4172,Mus musculus,10x Genomics Visium,10.1038/s41416-024-02617-7,38424167,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205307
-GSE205707,6,7012,Canis lupus familiaris; Mus musculus,10x Genomics Visium,10.1172/jci.insight.162835,,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205707
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 GSE206552,4,10059,Homo sapiens,10x Genomics Visium,,37157887,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE206552
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 GSE244650,13,17541,Mus musculus,10x Genomics Visium,,40967223,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE244650
-GSE244723,4,217,Homo sapiens,Spatial Transcriptomics,,38011284,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE244723
 GSE245097,4,10662,Mus musculus,10x Genomics Visium,,38117901,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE245097
 GSE245263,1,2158,Mus musculus,10x Genomics Visium,10.1101/2023.10.26.564166v1,,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE245263
 GSE245274,46,150681,Mus musculus,10x Genomics Visium,,39567686,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE245274
@@ -430,7 +429,6 @@ GSE297064,2,3524,Homo sapiens,10x Genomics Visium,,41120571,https://www.ncbi.nlm
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 GSE297119,3,24218,Mus musculus,10x Genomics Visium,,40483363,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE297119
 GSE297621,2,6971,Mus musculus,10x Genomics Visium,,40730835,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE297621
-GSE298115,2,1201,Mus musculus,10x Genomics Visium,,41025096,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE298115
 GSE298286,14,39545,Homo sapiens,10x Genomics Visium,,41734374,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE298286
 GSE298689,1,2025,Mus musculus,10x Genomics Visium,,41503214,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE298689
 GSE298742,15,5473,Mus musculus,10x Genomics Visium,,,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE298742

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