Datasets:

Biogod
/

HESRT

9 packages withdrawn after an image-registration screen and author review. Catalog, study index, ontology sidecar, packages.json, SHA256SUMS, card and docs are updated; all other rows and packages are unchanged.

Files changed (22) hide show

CHANGELOG.md +8 -0
README.md +10 -10
dataset_card_metadata.json +5 -5
docs/DATA_SCHEMA.md +74 -74
docs/KNOWN_ISSUES.md +38 -10
docs/ONTOLOGY_MAPPING.md +8 -4
docs/REUSE.md +2 -2
docs/USAGE.md +4 -4
examples/hesrt_io.py +1 -1
releases/2026-09-17/SHA256SUMS +0 -9
releases/2026-09-17/catalog.csv +0 -9
releases/2026-09-17/catalog.parquet +2 -2
releases/2026-09-17/metadata_coverage.json +36 -36
releases/2026-09-17/ontology_mapping.csv +0 -9
releases/2026-09-17/ontology_mapping.parquet +2 -2
releases/2026-09-17/ontology_mapping_summary.json +14 -14
releases/2026-09-17/ontology_mapping_validation.json +4 -4
releases/2026-09-17/ontology_unresolved_terms.csv +0 -5
releases/2026-09-17/packages.json +0 -45
releases/2026-09-17/release.json +63 -13
releases/2026-09-17/studies.csv +2 -5
releases/2026-09-17/studies.parquet +2 -2

CHANGELOG.md CHANGED Viewed

@@ -1,5 +1,13 @@
 # Release notes
 ## 2026-09-17-v1.5 — corrections after a full value check, 2026-11-11
 - Every package of `2026-09-17-v1.4` was compared with the files deposited in GEO, value by value. 4,539 of 4,697 samples are equal to the deposit in both expression values and coordinates. 140 could not be checked automatically, in part or in full. 18 had problems and are corrected or withdrawn in this release.

 # Release notes
+## 2026-09-17-v1.6 — nine misaligned samples withdrawn, 2026-11-11
+- Withdrew 9 packages from 5 studies because their spots do not sit on the tissue in the image: `GSM7156292` to `GSM7156295` (GSE229175), `GSM9097318` and `GSM9097320` (GSE302160), `GSM8925216` (GSE294844), `GSM8770960` (GSE288607) and `GSM9317397` (GSE311123). Their expression values and coordinates are equal to the GEO deposit; only the match between spots and image is wrong.
+- Eight of these samples were listed as misaligned in the notes of `2026-09-17-v1.5`. `GSM9317397` was listed there as "could not be judged"; the author has now judged it as misaligned. The other 12 samples from that list (11 from GSE174647 and `GSM8509590`) were judged as correctly registered and stay in the release.
+- GSE229175, GSE302160 and GSE311123 leave the release completely. GSE288607 keeps 8 samples and GSE294844 keeps 3.
+- The release now holds 4,682 samples (`2026-09-17-v1.5` had 4,691) from 530 studies, 54,902,915 observations and 421,746,281,566 compressed bytes (656,574,825,375 uncompressed).
+- No package was replaced. All other packages, catalog rows and checksums are unchanged. Earlier tags (`2026-09-17-v1` to `2026-09-17-v1.5`) are kept, so the old files stay reachable for tracing earlier work.
 ## 2026-09-17-v1.5 — corrections after a full value check, 2026-11-11
 - Every package of `2026-09-17-v1.4` was compared with the files deposited in GEO, value by value. 4,539 of 4,697 samples are equal to the deposit in both expression values and coordinates. 140 could not be checked automatically, in part or in full. 18 had problems and are corrected or withdrawn in this release.

README.md CHANGED Viewed

@@ -38,9 +38,9 @@ configs:
 | Samples (GSMs) | Studies (GSEs) | Expression observations | Compressed packages |
 |---:|---:|---:|---:|
-| 4,691 | 533 | 54,925,797 | 422.08 GB |
-Each sample is a self-contained, checksummed `tar.zst` package. Browse the catalog, select the accessions you need, then download those samples. The full collection contains approximately 657.42 GB of uncompressed member data; **do not clone the repository to try one sample**.
 The counts describe sample artifacts and source-defined observations (spots, cells or bins), not independent donors. Every included package has a recorded human visual-review PASS. Source interpretation and outstanding verification annotations remain available in the catalog and [known issues](docs/KNOWN_ISSUES.md).
@@ -58,7 +58,7 @@ HESRT is public. No sign-in, access request or form is needed: the catalog and e
 ## Start with a 3.2 MB sample
-Python 3.11+. Download the current example tools; they resolve the pinned data release `2026-09-17-v1.5` to a single commit, verify checksums, extract to disk and open the matrix in backed mode.
 ```bash
 python -m pip install "huggingface_hub>=0.34,<2"
@@ -76,7 +76,7 @@ from huggingface_hub import HfApi, hf_hub_download
 import pandas as pd
 revision = HfApi().dataset_info(
-    "Biogod/HESRT", revision="2026-09-17-v1.5"
 ).sha
 catalog = pd.read_parquet(hf_hub_download(
     "Biogod/HESRT", "releases/2026-09-17/catalog.parquet",
@@ -86,15 +86,15 @@ human = catalog.loc[catalog.organism.eq("Homo sapiens")]
 print(human[["gsm_id", "tissue", "technology", "n_obs", "archive_bytes"]].head())
 ```
-The native Viewer has three configurations: **reviewed_catalog** (4,691 rows, 96 columns), **studies** (533 rows), and **visual_preview** (eight examples). These are lightweight indexes and previews, not streamed full-resolution matrices. `reviewed` is an inventory split, not a train/test assignment.
 ### Composition
 | Exact catalog label | Samples |
 |---|---:|
-| Homo sapiens | 2,833 |
 | Mus musculus | 1,651 |
-| 10x Genomics Visium | 4,143 |
 | Spatial Transcriptomics | 267 |
 | 10x Genomics Visium for FFPE | 108 |
 | 10x Genomics Visium HD | 61 |
@@ -107,7 +107,7 @@ Technology and tissue labels are source-derived. Labels can be heterogeneous, an
 The catalog now includes a conservative machine-readable ontology layer while preserving every original metadata field. Organisms map to NCBI Taxonomy; animal anatomy maps to UBERON; plant anatomy maps to Plant Ontology; disease maps to MONDO. No fuzzy match is accepted automatically.
-Current coverage is **4,688/4,691 organism records**, **3,023/4,691 tissue labels**, and **1,896/2,403 non-null disease labels**. A further **105 disease labels** are explicitly classified as control/reference/non-disease states rather than being forced into MONDO. Compound tumor/specimen phrases that do not identify an ontology term with sufficient confidence stay unresolved.
 Use `*_ontology_status` and `*_ontology_match_type` to distinguish exact mappings, source-validated aliases, controls, ambiguity and unresolved values. See the [ontology mapping protocol and audit](docs/ONTOLOGY_MAPPING.md).
@@ -126,7 +126,7 @@ GSM....tar.zst
   manifest.json              Per-member sizes and SHA256 hashes
 ```
-Expression/image binaries are unchanged by lossless packaging of the selected standardized artifacts. Release 2026-09-17-v1.5 replaced 12 packages and withdrew 6 after every released value was compared with the GEO deposit; the replaced packages store coordinates differently and have no QC graphic (see [known issues](docs/KNOWN_ISSUES.md)). HESRT does **not** claim that every `X` matrix contains source-verified raw UMI counts. A release-wide numerical audit identified eight samples whose `X` matrices contain clear non-integer values: `GSM7781044` (GSE243225) and `GSM8243007`–`GSM8243013` (GSE266244). These source-defined matrices are retained as deposited/standardized rather than reverse-engineered into synthetic counts. Analyses that require integer raw counts should exclude or source-verify these eight samples. The remaining matrices are integer-typed or numerically integer-like in the audit, but that alone is not proof of raw-count provenance. Coordinate frame, units and expression representation should be interpreted using provenance. The name `wsi.tif` does not guarantee a TIFF file, a specific stain, or a full-resolution whole-slide scan.
 ## Release files
@@ -140,4 +140,4 @@ HESRT is the human-reviewed H&E-paired collection produced by the earlier Spatia
 ## Reuse and citation
-Underlying source materials retain their source-specific terms; no blanket redistribution license is asserted. Cite the source GEO accessions/publications and **HESRT release 2026-09-17-v1.5**, recording its resolved Hub commit. See [reuse and citation](docs/REUSE.md) and [release notes](CHANGELOG.md). This resource is intended for research, not clinical decision making.

 | Samples (GSMs) | Studies (GSEs) | Expression observations | Compressed packages |
 |---:|---:|---:|---:|
+| 4,682 | 530 | 54,902,915 | 421.75 GB |
+Each sample is a self-contained, checksummed `tar.zst` package. Browse the catalog, select the accessions you need, then download those samples. The full collection contains approximately 656.57 GB of uncompressed member data; **do not clone the repository to try one sample**.
 The counts describe sample artifacts and source-defined observations (spots, cells or bins), not independent donors. Every included package has a recorded human visual-review PASS. Source interpretation and outstanding verification annotations remain available in the catalog and [known issues](docs/KNOWN_ISSUES.md).
 ## Start with a 3.2 MB sample
+Python 3.11+. Download the current example tools; they resolve the pinned data release `2026-09-17-v1.6` to a single commit, verify checksums, extract to disk and open the matrix in backed mode.
 ```bash
 python -m pip install "huggingface_hub>=0.34,<2"
 import pandas as pd
 revision = HfApi().dataset_info(
+    "Biogod/HESRT", revision="2026-09-17-v1.6"
 ).sha
 catalog = pd.read_parquet(hf_hub_download(
     "Biogod/HESRT", "releases/2026-09-17/catalog.parquet",
 print(human[["gsm_id", "tissue", "technology", "n_obs", "archive_bytes"]].head())
 ```
+The native Viewer has three configurations: **reviewed_catalog** (4,682 rows, 96 columns), **studies** (530 rows), and **visual_preview** (eight examples). These are lightweight indexes and previews, not streamed full-resolution matrices. `reviewed` is an inventory split, not a train/test assignment.
 ### Composition
 | Exact catalog label | Samples |
 |---|---:|
+| Homo sapiens | 2,829 |
 | Mus musculus | 1,651 |
+| 10x Genomics Visium | 4,135 |
 | Spatial Transcriptomics | 267 |
 | 10x Genomics Visium for FFPE | 108 |
 | 10x Genomics Visium HD | 61 |
 The catalog now includes a conservative machine-readable ontology layer while preserving every original metadata field. Organisms map to NCBI Taxonomy; animal anatomy maps to UBERON; plant anatomy maps to Plant Ontology; disease maps to MONDO. No fuzzy match is accepted automatically.
+Current coverage is **4,679/4,682 organism records**, **3,021/4,682 tissue labels**, and **1,893/2,398 non-null disease labels**. A further **105 disease labels** are explicitly classified as control/reference/non-disease states rather than being forced into MONDO. Compound tumor/specimen phrases that do not identify an ontology term with sufficient confidence stay unresolved.
 Use `*_ontology_status` and `*_ontology_match_type` to distinguish exact mappings, source-validated aliases, controls, ambiguity and unresolved values. See the [ontology mapping protocol and audit](docs/ONTOLOGY_MAPPING.md).
   manifest.json              Per-member sizes and SHA256 hashes
 ```
+Expression/image binaries are unchanged by lossless packaging of the selected standardized artifacts. Release 2026-09-17-v1.5 replaced 12 packages and withdrew 6 after every released value was compared with the GEO deposit; the replaced packages store coordinates differently and have no QC graphic. Release 2026-09-17-v1.6 withdrew 9 more packages whose spots do not sit on the tissue in the image (see [known issues](docs/KNOWN_ISSUES.md)). HESRT does **not** claim that every `X` matrix contains source-verified raw UMI counts. A release-wide numerical audit identified eight samples whose `X` matrices contain clear non-integer values: `GSM7781044` (GSE243225) and `GSM8243007`–`GSM8243013` (GSE266244). These source-defined matrices are retained as deposited/standardized rather than reverse-engineered into synthetic counts. Analyses that require integer raw counts should exclude or source-verify these eight samples. The remaining matrices are integer-typed or numerically integer-like in the audit, but that alone is not proof of raw-count provenance. Coordinate frame, units and expression representation should be interpreted using provenance. The name `wsi.tif` does not guarantee a TIFF file, a specific stain, or a full-resolution whole-slide scan.
 ## Release files
 ## Reuse and citation
+Underlying source materials retain their source-specific terms; no blanket redistribution license is asserted. Cite the source GEO accessions/publications and **HESRT release 2026-09-17-v1.6**, recording its resolved Hub commit. See [reuse and citation](docs/REUSE.md) and [release notes](CHANGELOG.md). This resource is intended for research, not clinical decision making.

dataset_card_metadata.json CHANGED Viewed

@@ -1,9 +1,9 @@
 {
   "dataset_name": "HESRT",
   "release": "2026-09-17",
-  "samples": 4691,
-  "studies": 533,
-  "observations": 54925797,
   "catalog": "releases/2026-09-17/catalog.parquet",
   "packages": "releases/2026-09-17/samples/{gse_id}/{gsm_id}.tar.zst",
   "lossless": true,
@@ -11,9 +11,9 @@
   "license": "source-specific; see dataset card",
   "visual_preview": "releases/2026-09-17/visual_preview.parquet",
   "visual_preview_samples": 9,
-  "card_version": "2026-11-11-v1.5",
   "size_unit": "GSM sample artifacts",
-  "viewer_rows": 4691,
   "ontology_mapping": {
     "version": "hesrt-ontology-mapping-v1",
     "tissue": "UBERON + Plant Ontology",

 {
   "dataset_name": "HESRT",
   "release": "2026-09-17",
+  "samples": 4682,
+  "studies": 530,
+  "observations": 54902915,
   "catalog": "releases/2026-09-17/catalog.parquet",
   "packages": "releases/2026-09-17/samples/{gse_id}/{gsm_id}.tar.zst",
   "lossless": true,
   "license": "source-specific; see dataset card",
   "visual_preview": "releases/2026-09-17/visual_preview.parquet",
   "visual_preview_samples": 9,
+  "card_version": "2026-11-11-v1.6",
   "size_unit": "GSM sample artifacts",
+  "viewer_rows": 4682,
   "ontology_mapping": {
     "version": "hesrt-ontology-mapping-v1",
     "tissue": "UBERON + Plant Ontology",

docs/DATA_SCHEMA.md CHANGED Viewed

@@ -2,87 +2,87 @@
 One row is one GSM artifact. The current catalog has 96 columns: the original 80 fields plus 16 ontology-mapping fields. The original 80 columns remain value-identical to the pre-ontology catalog. CSV is a portable fallback; Parquet retains types. Null values are not imputed.
-| Field | Stored dtype | Non-null / 4,691 | Meaning |
 |---|---|---:|---|
-| `release_version` | `object` | 4,691 | Dated release namespace. |
-| `gse_id` | `object` | 4,691 | Parent GEO study accession; not a donor identifier. |
-| `gsm_id` | `object` | 4,691 | Unique catalog key, an accession-level sample artifact. |
-| `organism` | `object` | 4,691 | Source-derived organism label. |
-| `organism_raw` | `object` | 4,691 | Preserved source value before metadata normalization (serialized where needed). |
-| `organism_status` | `object` | 4,691 | Normalization status for the associated metadata field. |
-| `tissue` | `object` | 4,691 | Source-derived tissue/anatomy label; preserved independently of ontology mapping. |
-| `tissue_raw` | `object` | 4,691 | Preserved source value before metadata normalization (serialized where needed). |
-| `tissue_status` | `object` | 4,691 | Normalization status for the associated metadata field. |
-| `disease` | `object` | 2,403 | Source-derived disease; null is unknown, not healthy. |
-| `disease_raw` | `object` | 2,403 | Preserved source value before metadata normalization (serialized where needed). |
-| `disease_status` | `object` | 4,691 | Normalization status for the associated metadata field. |
-| `sex` | `object` | 1,447 | Source-reported sex, when present. |
-| `sex_raw` | `object` | 1,447 | Preserved source value before metadata normalization (serialized where needed). |
-| `sex_status` | `object` | 4,691 | Normalization status for the associated metadata field. |
 | `age` | `object` | 1,636 | Source-reported age; units/formats may vary. |
 | `age_raw` | `object` | 1,636 | Preserved source value before metadata normalization (serialized where needed). |
-| `age_status` | `object` | 4,691 | Normalization status for the associated metadata field. |
 | `donor_id` | `object` | 1,487 | Nullable source donor label; not independently verified. |
 | `donor_id_raw` | `object` | 1,487 | Preserved source value before metadata normalization (serialized where needed). |
-| `donor_id_status` | `object` | 4,691 | Normalization status for the associated metadata field. |
-| `condition` | `object` | 3,533 | Source-derived condition description. |
-| `condition_raw` | `object` | 3,533 | Preserved source value before metadata normalization (serialized where needed). |
-| `condition_status` | `object` | 4,691 | Normalization status for the associated metadata field. |
-| `technology` | `object` | 4,691 | Source-derived technology label. |
-| `technology_raw` | `object` | 4,691 | Preserved source value before metadata normalization (serialized where needed). |
-| `technology_status` | `object` | 4,691 | Normalization status for the associated metadata field. |
-| `platform` | `object` | 4,691 | Source platform/accession label. |
-| `platform_raw` | `object` | 4,691 | Preserved source value before metadata normalization (serialized where needed). |
-| `platform_status` | `object` | 4,691 | Normalization status for the associated metadata field. |
-| `stain_type` | `object` | 2,335 | Source-reported stain; do not infer from filenames. |
-| `stain_type_raw` | `object` | 2,335 | Preserved source value before metadata normalization (serialized where needed). |
-| `stain_type_status` | `object` | 4,691 | Normalization status for the associated metadata field. |
 | `publication_doi` | `object` | 634 | Source publication DOI if available. |
 | `publication_doi_raw` | `object` | 634 | Preserved source value before metadata normalization (serialized where needed). |
-| `publication_doi_status` | `object` | 4,691 | Normalization status for the associated metadata field. |
-| `publication_pmid` | `object` | 3,908 | Source publication PubMed ID if available. |
-| `publication_pmid_raw` | `object` | 3,908 | Preserved source value before metadata normalization (serialized where needed). |
-| `publication_pmid_status` | `object` | 4,691 | Normalization status for the associated metadata field. |
-| `n_obs` | `int64` | 4,691 | Rows in the selected expression matrix; source-defined spots/cells/bins. |
-| `n_vars` | `int64` | 4,691 | Features in the selected expression matrix. |
-| `matrix_storage` | `object` | 4,691 | Dense or sparse HDF5 encoding for X. |
-| `matrix_dtype` | `object` | 4,691 | Stored expression value dtype. |
-| `coordinate_location` | `object` | 4,691 | Indexed coordinate array location. |
-| `coordinates_finite` | `bool` | 4,691 | Whether inspected coordinate values are finite. |
-| `has_raw` | `bool` | 4,691 | Preserved source value before metadata normalization (serialized where needed). |
-| `layer_names` | `object` | 4,691 | JSON-encoded list of stored layer names. |
-| `obs_ids_unique` | `bool` | 4,691 | Uniqueness of stored observation identifiers. |
-| `var_ids_unique` | `bool` | 4,691 | Uniqueness of stored feature identifiers. |
-| `image_width` | `int64` | 4,691 | First image/page width in pixels. |
-| `image_height` | `int64` | 4,691 | First image/page height in pixels. |
-| `image_dtype` | `object` | 4,691 | Image dtype/mode from header inspection. |
-| `image_compression` | `object` | 4,691 | Source compression description. |
-| `image_pages` | `int64` | 4,691 | Number of pages/frames detected by the reader. |
-| `human_review` | `object` | 4,691 | Recorded visual-review decision for the selected artifact. |
-| `reviewed_at` | `object` | 4,691 | Recorded review timestamp. |
-| `review_version` | `object` | 4,691 | Recorded review version. |
-| `normalization_review_required` | `bool` | 4,691 | Metadata normalization needs further interpretation/review. |
-| `donor_identity_verified` | `bool` | 4,691 | Whether donor identity was independently verified (false in this release). |
-| `screening_class` | `object` | 4,691 | Recorded upstream screening class; not a clinical diagnosis. |
-| `source_verification_status` | `object` | 4,691 | Recorded source/scientific verification status, separate from visual review. |
-| `integrity_annotation` | `object` | 4,691 | Retained artifact integrity annotation, if present. |
-| `recovery_source_comparison_pending` | `bool` | 4,691 | GSE174647 recovery source-comparison annotation remains pending. |
-| `geo_sample_url` | `object` | 4,691 | Source GEO sample record. |
-| `geo_study_url` | `object` | 4,691 | Source GEO study record. |
-| `archive_path` | `object` | 4,691 | Hub-relative path to the versioned sample package. |
-| `expression_member` | `object` | 4,691 | Canonical expression member filename. |
-| `image_member` | `object` | 4,691 | Canonical image member filename. |
-| `expression_state` | `object` | 4,691 | Source-defined representation; consult provenance before normalization. |
-| `source_license` | `object` | 4,691 | Source-specific terms; consult the original deposit/publication. |
-| `metadata_ruleset` | `object` | 4,691 | Deterministic metadata-normalization ruleset version. |
-| `archive_bytes` | `int64` | 4,691 | Exact compressed package bytes. |
-| `archive_sha256` | `object` | 4,691 | SHA256 of compressed package bytes. |
-| `uncompressed_bytes` | `int64` | 4,691 | Sum of non-manifest member bytes; excludes the manifest itself. |
-| `member_count` | `int64` | 4,691 | Number of tar members, including manifest.json. |
-| `roundtrip_verified` | `bool` | 4,691 | Package received an additional unpack/re-hash check during initial packaging (not all packages). |
-| `source_binary_sha256_recomputed` | `bool` | 4,691 | Image/matrix hashes were recomputed while packaging the selected input artifacts. |
-| `expression_sha256` | `object` | 4,691 | SHA256 of the selected expression binary. |
-| `image_sha256` | `object` | 4,691 | SHA256 of the selected image binary. |
 | `image_format` | `object` | 359 | Detected content format; may differ from the .tif filename. |
 ## Ontology extension fields

 One row is one GSM artifact. The current catalog has 96 columns: the original 80 fields plus 16 ontology-mapping fields. The original 80 columns remain value-identical to the pre-ontology catalog. CSV is a portable fallback; Parquet retains types. Null values are not imputed.
+| Field | Stored dtype | Non-null / 4,682 | Meaning |
 |---|---|---:|---|
+| `release_version` | `object` | 4,682 | Dated release namespace. |
+| `gse_id` | `object` | 4,682 | Parent GEO study accession; not a donor identifier. |
+| `gsm_id` | `object` | 4,682 | Unique catalog key, an accession-level sample artifact. |
+| `organism` | `object` | 4,682 | Source-derived organism label. |
+| `organism_raw` | `object` | 4,682 | Preserved source value before metadata normalization (serialized where needed). |
+| `organism_status` | `object` | 4,682 | Normalization status for the associated metadata field. |
+| `tissue` | `object` | 4,682 | Source-derived tissue/anatomy label; preserved independently of ontology mapping. |
+| `tissue_raw` | `object` | 4,682 | Preserved source value before metadata normalization (serialized where needed). |
+| `tissue_status` | `object` | 4,682 | Normalization status for the associated metadata field. |
+| `disease` | `object` | 2,398 | Source-derived disease; null is unknown, not healthy. |
+| `disease_raw` | `object` | 2,398 | Preserved source value before metadata normalization (serialized where needed). |
+| `disease_status` | `object` | 4,682 | Normalization status for the associated metadata field. |
+| `sex` | `object` | 1,446 | Source-reported sex, when present. |
+| `sex_raw` | `object` | 1,446 | Preserved source value before metadata normalization (serialized where needed). |
+| `sex_status` | `object` | 4,682 | Normalization status for the associated metadata field. |
 | `age` | `object` | 1,636 | Source-reported age; units/formats may vary. |
 | `age_raw` | `object` | 1,636 | Preserved source value before metadata normalization (serialized where needed). |
+| `age_status` | `object` | 4,682 | Normalization status for the associated metadata field. |
 | `donor_id` | `object` | 1,487 | Nullable source donor label; not independently verified. |
 | `donor_id_raw` | `object` | 1,487 | Preserved source value before metadata normalization (serialized where needed). |
+| `donor_id_status` | `object` | 4,682 | Normalization status for the associated metadata field. |
+| `condition` | `object` | 3,526 | Source-derived condition description. |
+| `condition_raw` | `object` | 3,526 | Preserved source value before metadata normalization (serialized where needed). |
+| `condition_status` | `object` | 4,682 | Normalization status for the associated metadata field. |
+| `technology` | `object` | 4,682 | Source-derived technology label. |
+| `technology_raw` | `object` | 4,682 | Preserved source value before metadata normalization (serialized where needed). |
+| `technology_status` | `object` | 4,682 | Normalization status for the associated metadata field. |
+| `platform` | `object` | 4,682 | Source platform/accession label. |
+| `platform_raw` | `object` | 4,682 | Preserved source value before metadata normalization (serialized where needed). |
+| `platform_status` | `object` | 4,682 | Normalization status for the associated metadata field. |
+| `stain_type` | `object` | 2,334 | Source-reported stain; do not infer from filenames. |
+| `stain_type_raw` | `object` | 2,334 | Preserved source value before metadata normalization (serialized where needed). |
+| `stain_type_status` | `object` | 4,682 | Normalization status for the associated metadata field. |
 | `publication_doi` | `object` | 634 | Source publication DOI if available. |
 | `publication_doi_raw` | `object` | 634 | Preserved source value before metadata normalization (serialized where needed). |
+| `publication_doi_status` | `object` | 4,682 | Normalization status for the associated metadata field. |
+| `publication_pmid` | `object` | 3,901 | Source publication PubMed ID if available. |
+| `publication_pmid_raw` | `object` | 3,901 | Preserved source value before metadata normalization (serialized where needed). |
+| `publication_pmid_status` | `object` | 4,682 | Normalization status for the associated metadata field. |
+| `n_obs` | `int64` | 4,682 | Rows in the selected expression matrix; source-defined spots/cells/bins. |
+| `n_vars` | `int64` | 4,682 | Features in the selected expression matrix. |
+| `matrix_storage` | `object` | 4,682 | Dense or sparse HDF5 encoding for X. |
+| `matrix_dtype` | `object` | 4,682 | Stored expression value dtype. |
+| `coordinate_location` | `object` | 4,682 | Indexed coordinate array location. |
+| `coordinates_finite` | `bool` | 4,682 | Whether inspected coordinate values are finite. |
+| `has_raw` | `bool` | 4,682 | Preserved source value before metadata normalization (serialized where needed). |
+| `layer_names` | `object` | 4,682 | JSON-encoded list of stored layer names. |
+| `obs_ids_unique` | `bool` | 4,682 | Uniqueness of stored observation identifiers. |
+| `var_ids_unique` | `bool` | 4,682 | Uniqueness of stored feature identifiers. |
+| `image_width` | `int64` | 4,682 | First image/page width in pixels. |
+| `image_height` | `int64` | 4,682 | First image/page height in pixels. |
+| `image_dtype` | `object` | 4,682 | Image dtype/mode from header inspection. |
+| `image_compression` | `object` | 4,682 | Source compression description. |
+| `image_pages` | `int64` | 4,682 | Number of pages/frames detected by the reader. |
+| `human_review` | `object` | 4,682 | Recorded visual-review decision for the selected artifact. |
+| `reviewed_at` | `object` | 4,682 | Recorded review timestamp. |
+| `review_version` | `object` | 4,682 | Recorded review version. |
+| `normalization_review_required` | `bool` | 4,682 | Metadata normalization needs further interpretation/review. |
+| `donor_identity_verified` | `bool` | 4,682 | Whether donor identity was independently verified (false in this release). |
+| `screening_class` | `object` | 4,682 | Recorded upstream screening class; not a clinical diagnosis. |
+| `source_verification_status` | `object` | 4,682 | Recorded source/scientific verification status, separate from visual review. |
+| `integrity_annotation` | `object` | 4,682 | Retained artifact integrity annotation, if present. |
+| `recovery_source_comparison_pending` | `bool` | 4,682 | GSE174647 recovery source-comparison annotation remains pending. |
+| `geo_sample_url` | `object` | 4,682 | Source GEO sample record. |
+| `geo_study_url` | `object` | 4,682 | Source GEO study record. |
+| `archive_path` | `object` | 4,682 | Hub-relative path to the versioned sample package. |
+| `expression_member` | `object` | 4,682 | Canonical expression member filename. |
+| `image_member` | `object` | 4,682 | Canonical image member filename. |
+| `expression_state` | `object` | 4,682 | Source-defined representation; consult provenance before normalization. |
+| `source_license` | `object` | 4,682 | Source-specific terms; consult the original deposit/publication. |
+| `metadata_ruleset` | `object` | 4,682 | Deterministic metadata-normalization ruleset version. |
+| `archive_bytes` | `int64` | 4,682 | Exact compressed package bytes. |
+| `archive_sha256` | `object` | 4,682 | SHA256 of compressed package bytes. |
+| `uncompressed_bytes` | `int64` | 4,682 | Sum of non-manifest member bytes; excludes the manifest itself. |
+| `member_count` | `int64` | 4,682 | Number of tar members, including manifest.json. |
+| `roundtrip_verified` | `bool` | 4,682 | Package received an additional unpack/re-hash check during initial packaging (not all packages). |
+| `source_binary_sha256_recomputed` | `bool` | 4,682 | Image/matrix hashes were recomputed while packaging the selected input artifacts. |
+| `expression_sha256` | `object` | 4,682 | SHA256 of the selected expression binary. |
+| `image_sha256` | `object` | 4,682 | SHA256 of the selected image binary. |
 | `image_format` | `object` | 359 | Detected content format; may differ from the .tif filename. |
 ## Ontology extension fields

docs/KNOWN_ISSUES.md CHANGED Viewed

@@ -2,11 +2,11 @@
 This page describes the released artifacts, not a new scientific evaluation.
-All 4,691 included packages carry a recorded human visual-review PASS for the selected artifact. That label applies to visual alignment review. It does not independently certify every expression value, donor identity, source annotation, assay or downstream application.
 The **176 GSE174647 recovery samples** retain a pending independent 540-spot source-comparison annotation (`recovery_source_comparison_pending`). They remain in the release with that flag; packaging/publication does not resolve or remove it. Five known synthetic-expression HOLDs and two workflow-contract failures were excluded during release preparation. A downstream study should choose eligibility criteria appropriate to its scientific claim and report exclusions explicitly.
-The 54,925,797 observations are a sum across heterogeneous technologies and source-defined observation units (for example spots, cells or bins), not a count of independent patients. The 4,691 GSMs are accession-level sample artifacts; donors, repeated sections and source duplication can cross accession boundaries. The example split groups GSEs and exact binary duplicates but does not establish donor-disjoint evaluation.
 Expression and image binaries are byte-identical to the selected standardized inputs during packaging (for the 12 packages replaced in 2026-09-17-v1.5, the inputs are the re-converted files described below). This is a lossless packaging claim, **not** a claim that the preceding standardization made no changes relative to the original GEO deposit. Public JSON has host paths sanitized; original JSON hashes are recorded where applicable. Null metadata is preserved rather than filled with assumed healthy/control labels.
@@ -24,7 +24,7 @@ HESRT preserves the expression representation carried by the selected standardiz
 - `GSM9026963` (`GSE298953`): the feature index has the form `<symbol>_<column number>` (for example `OR4F5_2`), which was added during conversion to make names unique. Use `var['gene_name']` for the gene symbol and `var['gene_ids']` for the Ensembl ID. The source positions file marks 1,000 of 4,992 spots as in tissue, and the sample holds those 1,000 spots.
 - Three `GSE207592` samples carry the organism label `Mus` as deposited. It matches both a genus and a subgenus in NCBI Taxonomy, so no taxon ID is assigned.
-## Corrections in 2026-09-17-v1.5
 On 2026-11-11 every package of release `2026-09-17-v1.4` (4,697 samples) was compared with the files deposited in GEO. The check read the deposited files again and compared each expression value and each coordinate with the released one.
@@ -36,7 +36,7 @@ On 2026-11-11 every package of release `2026-09-17-v1.4` (4,697 samples) was com
 | Rows in the wrong order | 3 |
 | Values equal to the deposit, but the deposit has no gene names | 4 |
-The 140 samples in the second row were not found to be wrong; they were not checked. They remain in this release. The 18 samples in the last three rows were handled as follows.
 ### Replaced packages (12 samples)
@@ -68,9 +68,18 @@ The new packages differ from the other packages in a few ways:
 These six samples are no longer in the catalog, the study index or the checksums. `GSM7825036` was one of the nine preview samples on the dataset card, so the card now shows eight.
-### Samples whose spots do not sit on the tissue (8 samples, still in the release)
-On the same day the image registration of all 4,697 packages was screened. For each sample the screen measured how many spots fall inside the image and on tissue. 230 samples were flagged and viewed one by one. Most flags were false alarms, such as pale tissue or tissue that fills the whole image. Ten samples were confirmed as misaligned. Two of them are the withdrawn GSE298115 samples. The other eight remain in this release:
 | Study | Samples | What is seen |
 | --- | --- | --- |
@@ -78,9 +87,28 @@ On the same day the image registration of all 4,697 packages was screened. For e
 | GSE302160 | `GSM9097318`, `GSM9097320` | The spot grid is shifted and extends onto bare glass. |
 | GSE294844 | `GSM8925216` | The tissue forms two horizontal strips, but the spots form two vertical strips. |
 | GSE288607 | `GSM8770960` | Only 31% of the spots fall inside the image. The spot grid is about three times larger than the image. |
-For these eight samples the expression values and the coordinates are equal to the deposit. Only the match between spots and image is wrong. Do not use them for analyses that pair image patches with expression until they are corrected or withdrawn in a later release.
-In 19 further samples the spots that fall inside the image match the tissue, but the image covers only part of the spots (5% to 50% of the spots fall outside it). The largest cases are `GSM9264149` (50%) and `GSM9264148` (25%) from GSE309269, and `GSM9026210` (18%) from GSE298932. Filter spots by the image bounds before you extract patches. For 13 samples (11 from GSE174647, `GSM8509590`, `GSM9317397`) the registration could not be judged by eye. Look at the overlay yourself before you pair image and expression for these samples.
 The screen has limits. It cannot detect a small shift that keeps the spots on tissue. It cannot judge images that are fully covered by tissue. It does not detect rows in the wrong order. The 4,467 samples that were not flagged were not viewed again.

 This page describes the released artifacts, not a new scientific evaluation.
+All 4,682 included packages carry a recorded human visual-review PASS for the selected artifact. That label applies to visual alignment review. It does not independently certify every expression value, donor identity, source annotation, assay or downstream application.
 The **176 GSE174647 recovery samples** retain a pending independent 540-spot source-comparison annotation (`recovery_source_comparison_pending`). They remain in the release with that flag; packaging/publication does not resolve or remove it. Five known synthetic-expression HOLDs and two workflow-contract failures were excluded during release preparation. A downstream study should choose eligibility criteria appropriate to its scientific claim and report exclusions explicitly.
+The 54,902,915 observations are a sum across heterogeneous technologies and source-defined observation units (for example spots, cells or bins), not a count of independent patients. The 4,682 GSMs are accession-level sample artifacts; donors, repeated sections and source duplication can cross accession boundaries. The example split groups GSEs and exact binary duplicates but does not establish donor-disjoint evaluation.
 Expression and image binaries are byte-identical to the selected standardized inputs during packaging (for the 12 packages replaced in 2026-09-17-v1.5, the inputs are the re-converted files described below). This is a lossless packaging claim, **not** a claim that the preceding standardization made no changes relative to the original GEO deposit. Public JSON has host paths sanitized; original JSON hashes are recorded where applicable. Null metadata is preserved rather than filled with assumed healthy/control labels.
 - `GSM9026963` (`GSE298953`): the feature index has the form `<symbol>_<column number>` (for example `OR4F5_2`), which was added during conversion to make names unique. Use `var['gene_name']` for the gene symbol and `var['gene_ids']` for the Ensembl ID. The source positions file marks 1,000 of 4,992 spots as in tissue, and the sample holds those 1,000 spots.
 - Three `GSE207592` samples carry the organism label `Mus` as deposited. It matches both a genus and a subgenus in NCBI Taxonomy, so no taxon ID is assigned.
+## Corrections in 2026-09-17-v1.5 and 2026-09-17-v1.6
 On 2026-11-11 every package of release `2026-09-17-v1.4` (4,697 samples) was compared with the files deposited in GEO. The check read the deposited files again and compared each expression value and each coordinate with the released one.
 | Rows in the wrong order | 3 |
 | Values equal to the deposit, but the deposit has no gene names | 4 |
+The 140 samples in the second row were not found to be wrong; they were not checked. They remained in `2026-09-17-v1.5`. The 18 samples in the last three rows were handled as follows.
 ### Replaced packages (12 samples)
 These six samples are no longer in the catalog, the study index or the checksums. `GSM7825036` was one of the nine preview samples on the dataset card, so the card now shows eight.
+### Samples whose spots do not sit on the tissue (11 samples, all withdrawn)
+On 2026-11-11 the image registration of all 4,697 packages of release `2026-09-17-v1.4` was screened. For each sample the screen measured how many spots fall inside the image and on tissue. 230 samples were flagged and viewed one by one. Most flags were false alarms, such as pale tissue or tissue that fills the whole image. The author then judged the 23 samples that looked wrong or unclear on a review page: 11 are misaligned, and 12 are correctly registered (11 from GSE174647 and `GSM8509590`). These 12 are counted in the second row of the table.
+| Result | Samples |
+| --- | ---: |
+| Not flagged by the screen (not viewed again) | 4,467 |
+| Flagged; the spots match the tissue | 200 |
+| Flagged; the spots match the tissue, but the image covers only part of the spots | 19 |
+| The spots do not sit on the tissue | 11 |
+Two of the 11 misaligned samples are `GSM9008651` and `GSM9008653` (GSE298115). They were withdrawn in `2026-09-17-v1.5`, together with four other samples that had a different problem. The other nine are withdrawn in `2026-09-17-v1.6`:
 | Study | Samples | What is seen |
 | --- | --- | --- |
 | GSE302160 | `GSM9097318`, `GSM9097320` | The spot grid is shifted and extends onto bare glass. |
 | GSE294844 | `GSM8925216` | The tissue forms two horizontal strips, but the spots form two vertical strips. |
 | GSE288607 | `GSM8770960` | Only 31% of the spots fall inside the image. The spot grid is about three times larger than the image. |
+| GSE311123 | `GSM9317397` | The spots lie on one large dark area of tissue. The author judged that they do not match the tissue. |
+For these nine samples the expression values and the coordinates are equal to the GEO deposit. Only the match between spots and image is wrong. The nine samples are no longer in the catalog, the study index or the checksums. GSE229175, GSE302160 and GSE311123 leave the release completely. GSE288607 keeps eight samples and GSE294844 keeps three.
+The old packages remain reachable under the earlier tags so that earlier work can be traced. If you used these nine samples, remove them from every analysis that pairs image patches with expression. Results that use only their expression values are not affected.
+In 19 further samples the spots that fall inside the image match the tissue, but the image covers only part of the spots (5% to 50% of the spots fall outside it). The largest cases are `GSM9264149` (50%) and `GSM9264148` (25%) from GSE309269, and `GSM9026210` (18%) from GSE298932. These samples remain in the release. Filter spots by the image bounds before you extract patches. The 19 samples are:
+| Study | Samples (share of spots outside the image) |
+| --- | --- |
+| GSE242352 | `GSM8513879` (7%) |
+| GSE296626 | `GSM8973758` (17%), `GSM8973768` (10%) |
+| GSE298286 | `GSM9011373` (13%) |
+| GSE298932 | `GSM9026210` (18%) |
+| GSE306833 | `GSM9210422` (5%) |
+| GSE307534 | `GSM9226169` (6%) |
+| GSE309269 | `GSM9264148` (25%), `GSM9264149` (50%) |
+| GSE311294 | `GSM9322960` (9%) |
+| GSE311783 | `GSM9331991` (7%) |
+| GSE312053 | `GSM9336958` (9%), `GSM9336959` (7%), `GSM9336960` (6%), `GSM9336961` (12%) |
+| GSE313896 | `GSM9377338` (5%) |
+| GSE316390 | `GSM9451526` (7%), `GSM9451527` (12%) |
+| GSE319409 | `GSM9517468` (9%) |
 The screen has limits. It cannot detect a small shift that keeps the spots on tissue. It cannot judge images that are fully covered by tissue. It does not detect rows in the wrong order. The 4,467 samples that were not flagged were not viewed again.

docs/ONTOLOGY_MAPPING.md CHANGED Viewed

@@ -23,12 +23,12 @@ Control/reference states, procedures, and non-disease phenotypes are not forced
 | Field | Result |
 |---|---:|
-| organism mapped | 4,688 / 4,691 |
-| tissue mapped | 3,023 / 4,691 |
-| disease mapped | 1,896 / 2,403 non-null disease labels |
 | disease control/non-disease states | 105 |
 | disease ambiguous | 4 |
-| disease unresolved | 395 |
 Tissue coverage is intentionally lower because many source tissue labels are compound specimen/pathology descriptions such as tumor state, treatment status, PDX, or section wording. Those are kept unresolved rather than inferred from disease names.
@@ -61,3 +61,7 @@ The 229 samples added in `2026-09-17-v1.4` were mapped with the same frozen onto
 ## Rows removed in 2026-09-17-v1.5
 Release `2026-09-17-v1.5` removed six samples (GSE244723 and GSE298115) from the catalog and from the ontology sidecar. The ontology columns of every remaining row are unchanged, including the 12 samples whose packages were replaced, because their source metadata did not change. The coverage table above describes the current catalog.

 | Field | Result |
 |---|---:|
+| organism mapped | 4,679 / 4,682 |
+| tissue mapped | 3,021 / 4,682 |
+| disease mapped | 1,893 / 2,398 non-null disease labels |
 | disease control/non-disease states | 105 |
 | disease ambiguous | 4 |
+| disease unresolved | 396 |
 Tissue coverage is intentionally lower because many source tissue labels are compound specimen/pathology descriptions such as tumor state, treatment status, PDX, or section wording. Those are kept unresolved rather than inferred from disease names.
 ## Rows removed in 2026-09-17-v1.5
 Release `2026-09-17-v1.5` removed six samples (GSE244723 and GSE298115) from the catalog and from the ontology sidecar. The ontology columns of every remaining row are unchanged, including the 12 samples whose packages were replaced, because their source metadata did not change. The coverage table above describes the current catalog.
+## Rows removed in 2026-09-17-v1.6
+Release `2026-09-17-v1.6` removed nine samples (GSE229175, GSE302160, GSE311123, one sample of GSE288607 and one of GSE294844) from the catalog and from the ontology sidecar. The ontology columns of every remaining row are unchanged. The coverage table above describes the current catalog.

docs/REUSE.md CHANGED Viewed

@@ -8,11 +8,11 @@ The collection is intended for research and benchmarking, not clinical decision
 ## Cite the exact version and source studies
-Cite the underlying GEO accession and publication for each study used. Additionally identify **HESRT release 2026-09-17-v1.5**, hosted at `Biogod/HESRT`, and preserve the immutable commit resolved from that tag in the analysis record. A minimal dataset reference is:
 ```bibtex
 @misc{hesrt20260917,
-  title = {HESRT: Human-reviewed spatial-omics sample artifacts, release 2026-09-17-v1.5},
   year = {2026},
   howpublished = {Hugging Face dataset repository},
   url = {https://huggingface.co/datasets/Biogod/HESRT},

 ## Cite the exact version and source studies
+Cite the underlying GEO accession and publication for each study used. Additionally identify **HESRT release 2026-09-17-v1.6**, hosted at `Biogod/HESRT`, and preserve the immutable commit resolved from that tag in the analysis record. A minimal dataset reference is:
 ```bibtex
 @misc{hesrt20260917,
+  title = {HESRT: Human-reviewed spatial-omics sample artifacts, release 2026-09-17-v1.6},
   year = {2026},
   howpublished = {Hugging Face dataset repository},
   url = {https://huggingface.co/datasets/Biogod/HESRT},

docs/USAGE.md CHANGED Viewed

@@ -1,6 +1,6 @@
 # HESRT usage guide
-Use Python 3.11 or newer. Start with the catalog, not a clone or full snapshot of the repository: the versioned packages total approximately **422.08 GB compressed**. This repository also retains older data paths.
 ## Install and obtain the examples
@@ -20,7 +20,7 @@ import pandas as pd
 repo = "Biogod/HESRT"
 revision = HfApi().dataset_info(
-    repo, revision="2026-09-17-v1.5"
 ).sha
 path = hf_hub_download(repo, "releases/2026-09-17/catalog.parquet",
                        repo_type="dataset", revision=revision)
@@ -36,12 +36,12 @@ print(len(brain), brain.archive_bytes.sum() / 1e9, "GB compressed")
 For a broader neuroscience cohort, inspect labels such as frontal cortex, BA44, BA46 and spinal cord as well. A text filter is not a comprehensive anatomical or clinical classification. Missing disease values mean **unknown**, not healthy controls. Use `*_raw` and `*_status` columns to inspect normalization.
-The native Dataset Viewer offers `reviewed_catalog` (all 4,691 catalog rows), `studies` (533 study summaries), and `visual_preview` (eight illustrative paired image/QC previews). It previews indexes and thumbnails, not the full expression matrices. With the optional `datasets` package:
 ```python
 from datasets import load_dataset
 rows = load_dataset("Biogod/HESRT", "reviewed_catalog",
-                    split="reviewed", revision="2026-09-17-v1.5")
 print(rows[0]["gsm_id"])
 ```

 # HESRT usage guide
+Use Python 3.11 or newer. Start with the catalog, not a clone or full snapshot of the repository: the versioned packages total approximately **421.75 GB compressed**. This repository also retains older data paths.
 ## Install and obtain the examples
 repo = "Biogod/HESRT"
 revision = HfApi().dataset_info(
+    repo, revision="2026-09-17-v1.6"
 ).sha
 path = hf_hub_download(repo, "releases/2026-09-17/catalog.parquet",
                        repo_type="dataset", revision=revision)
 For a broader neuroscience cohort, inspect labels such as frontal cortex, BA44, BA46 and spinal cord as well. A text filter is not a comprehensive anatomical or clinical classification. Missing disease values mean **unknown**, not healthy controls. Use `*_raw` and `*_status` columns to inspect normalization.
+The native Dataset Viewer offers `reviewed_catalog` (all 4,682 catalog rows), `studies` (530 study summaries), and `visual_preview` (eight illustrative paired image/QC previews). It previews indexes and thumbnails, not the full expression matrices. With the optional `datasets` package:
 ```python
 from datasets import load_dataset
 rows = load_dataset("Biogod/HESRT", "reviewed_catalog",
+                    split="reviewed", revision="2026-09-17-v1.6")
 print(rows[0]["gsm_id"])
 ```

examples/hesrt_io.py CHANGED Viewed

@@ -14,7 +14,7 @@ import zstandard as zstd
 from huggingface_hub import HfApi, hf_hub_download
 REPO_ID = "Biogod/HESRT"
-RELEASE_TAG = "2026-09-17-v1.5"
 PREFIX = "releases/2026-09-17/"

 from huggingface_hub import HfApi, hf_hub_download
 REPO_ID = "Biogod/HESRT"
+RELEASE_TAG = "2026-09-17-v1.6"
 PREFIX = "releases/2026-09-17/"

releases/2026-09-17/SHA256SUMS CHANGED Viewed

@@ -1183,10 +1183,6 @@ b7fbcb60297cbcd8af98a5d27af7c7b80db1f60ee0104c4ab07718301e5c0cbf  releases/2026-
 abe9aebbf85193c5887b5cf766e506870856f80fb23841f7b8e690b8025c88bd  releases/2026-09-17/samples/GSE228982/GSM7146858.tar.zst
 242c2ded166d5fd7cb788ed2d20155f0cc4873e5c9b0c5aad8a67ba8b943b797  releases/2026-09-17/samples/GSE228982/GSM7146859.tar.zst
 e31f10d7b7d31408f00b8ff0c6bbcc421e9323a4545c0d0711495be473277255  releases/2026-09-17/samples/GSE228982/GSM7146860.tar.zst
-c4e3696c9170f417bec658f7cf97d1cd748c9a3ee5f404922f35ece10d9562be  releases/2026-09-17/samples/GSE229175/GSM7156292.tar.zst
-03f5ed1f92d3ec503cda6e1319f89df9d5b54caa41203d86300bd503a65b6d44  releases/2026-09-17/samples/GSE229175/GSM7156293.tar.zst
-f3dcb922444bce12e93af017d8b2f310f773b96db81a30966ea066da3c10be1c  releases/2026-09-17/samples/GSE229175/GSM7156294.tar.zst
-3a3137e5fb7bbea3c62eb853be23feb975c3debe42c6d7457b9d9001388e4635  releases/2026-09-17/samples/GSE229175/GSM7156295.tar.zst
 9bf72e3e38405260e7d9a868a0b693a423a8e88248e17495b40ca787d6a248d2  releases/2026-09-17/samples/GSE229508/GSM7164655.tar.zst
 571533ed463e4281888eb9403ea40ce0e621020965684035c595e0c95b168efb  releases/2026-09-17/samples/GSE200751/GSM7164986.tar.zst
 5b708fce696ee3cc6d0adff3dff4bfe11dbfbfa86163f932eb5351310aa6d13a  releases/2026-09-17/samples/GSE200751/GSM7164987.tar.zst
@@ -3348,7 +3344,6 @@ d683da181741ca86d030cc6e83d313be63a22517cf74212a7d69eb8c4e9a8424  releases/2026-
 bb91720978f5aecec6baf6bb97bfbbc5c41abfe2ad025416ac0a61b4b090b3c6  releases/2026-09-17/samples/GSE288607/GSM8770957.tar.zst
 b9a33546f575d60e2b462adb108d105e90274e3d4d962c23b684b602f2ac3bf1  releases/2026-09-17/samples/GSE288607/GSM8770958.tar.zst
 f8cc3087030f1d60f05cb9098025c1114be671140385786adad62e592894d560  releases/2026-09-17/samples/GSE288607/GSM8770959.tar.zst
-a96b19424f883ea89414f7bbf2c5294788ed57482d8ab2c42254922d16107a79  releases/2026-09-17/samples/GSE288607/GSM8770960.tar.zst
 ef356c514bf9eba69ea70353fbad343361add990c2abeef2bd01998c0e069754  releases/2026-09-17/samples/GSE288607/GSM8770961.tar.zst
 22f8164a236419c19f5a8b3a48ffe175247b6175c05a62aa98872dfab3a72245  releases/2026-09-17/samples/GSE288607/GSM8770962.tar.zst
 0d676f18d23ceed35d04027331992b75ecd796d5f3f5a4d6af2e52e0e093d49e  releases/2026-09-17/samples/GSE288758/GSM8774701.tar.zst
@@ -3452,7 +3447,6 @@ ea737698525a13a6e608368278ab3ce05d36607512b4991518a28bb44110e7bb  releases/2026-
 4380aed023a7164be0dd3b3b0e32f8a89c79329923b7484556b8e38176f0cc84  releases/2026-09-17/samples/GSE294669/GSM8915498.tar.zst
 894286de7012b912d3520f2fd72edd06b1ccde77a00d1a4a73701893757c4067  releases/2026-09-17/samples/GSE294669/GSM8915499.tar.zst
 7509bbc02828a7964f876da69ec6a13ae18cb2299ddb3e379a03fbed24703f3e  releases/2026-09-17/samples/GSE294669/GSM8915500.tar.zst
-fbdce62ac8233aa2fd0b7b017e2d02da2c451897cb1209c0f0d8c6d61ecc619b  releases/2026-09-17/samples/GSE294844/GSM8925216.tar.zst
 8c639a861913484e6d74ac1df7f357f77b4f2b76ae1d2bc678d292173b60a8aa  releases/2026-09-17/samples/GSE294844/GSM8925218.tar.zst
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 2026-09-17,GSE228982,GSM7146858,Homo sapiens,Homo sapiens,unchanged,synovial joint,synovial joint,unmapped,psoriatic arthritis,psoriatic arthritis,unmapped,,,missing,,,missing,,,missing,psoriatic arthritis,psoriatic arthritis,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,H&E,H&E,unchanged,,,missing,38396288,38396288,unchanged,1368,36601,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,2000,RGB,source-defined,1,PASS,2026-09-06T02:36:30.890334+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7146858,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE228982,releases/2026-09-17/samples/GSE228982/GSM7146858.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,14459689,abe9aebbf85193c5887b5cf766e506870856f80fb23841f7b8e690b8025c88bd,67512803,9,False,True,e81887e97c603a99dbf42590172a057d2c5de3a0ec02bcbe5333e6eef3445ca6,dafa699f7c717b8d641beefc3d99fa264f601716ed10333b91e1a3ad0f893649,PNG,UBERON:0002217,synovial joint,UBERON,mapped,exact_label,,MONDO:0011849,psoriatic arthritis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE228982,GSM7146859,Homo sapiens,Homo sapiens,unchanged,synovial joint,synovial joint,unmapped,healthy,healthy,unchanged,,,missing,,,missing,,,missing,healthy,healthy,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,H&E,H&E,unchanged,,,missing,38396288,38396288,unchanged,927,36601,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,2000,RGB,source-defined,1,PASS,2026-09-06T02:36:30.890334+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7146859,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE228982,releases/2026-09-17/samples/GSE228982/GSM7146859.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,7837936,242c2ded166d5fd7cb788ed2d20155f0cc4873e5c9b0c5aad8a67ba8b943b797,24848062,9,False,True,4ac1d994dcd3bf7d3e6cb17c7541ed1637837408acfa2aaf68d63bb31eb1ffd4,a8c2786540fe66d4ba77f8f519930d3e5700da804e6a8ead29b703854e599884,PNG,UBERON:0002217,synovial joint,UBERON,mapped,exact_label,,,,,control_or_non_disease,curated_non_disease_state,control label,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
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 2026-09-17,GSE229508,GSM7164655,Mus musculus,Mus musculus,unchanged,forebrain,Forebrain,normalized,,,missing,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL21273,GPL21273,unchanged,,,missing,,,missing,40210990,40210990,unchanged,979,32285,csr_matrix,int32,"obs/x,obs/y",True,False,[],True,True,2000,1968,uint8,NONE,1,PASS,2026-09-06T02:13:07.411023+00:00,full-review-revision-110,False,False,B,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7164655,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE229508,releases/2026-09-17/samples/GSE229508/GSM7164655.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,20278601,9bf72e3e38405260e7d9a868a0b693a423a8e88248e17495b40ca787d6a248d2,32497425,9,False,True,2e422c5c690aa02a9b3bcf89f753d03a3523d30d81dd9d86e7f602a2ea49fe46,9dc8d2e23f89a5cfc322221690f0ca6951ec1624d3a4e90e2b32c3b8b4e1a29b,,UBERON:0001890,forebrain,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 2026-09-17,GSE229635,GSM7169587,Electrophorus voltai,Electrophorus voltai,unmapped,the main electric organ,the main electric organ,unmapped,,,missing,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL33292,GPL33292,unchanged,H&E,H&E,unchanged,,,missing,,,missing,2677,23221,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,2000,uint8,LZW,1,PASS,2026-09-06T02:36:30.890334+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7169587,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE229635,releases/2026-09-17/samples/GSE229635/GSM7169587.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,14556016,97a96df1623b8957b3f5c5c7405cc79181f73a415775a0add83715571acd496b,54713832,9,False,True,99d58ed0fc0d024ec14f8da1425c42d28671e86cf77f7a2ded71c67a93b8dd47,1967a2f5c0ee515c9f19db3f89d98b297e5f3f1a90141162f0853d122da163e3,,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:2609070,Electrophorus voltai,mapped,exact_scientific_name
 2026-09-17,GSE229635,GSM7169588,Electrophorus voltai,Electrophorus voltai,unmapped,the main electric organ,the main electric organ,unmapped,,,missing,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL33292,GPL33292,unchanged,H&E,H&E,unchanged,,,missing,,,missing,2862,23221,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,2000,uint8,LZW,1,PASS,2026-09-06T02:36:30.890334+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7169588,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE229635,releases/2026-09-17/samples/GSE229635/GSM7169588.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,15126641,fbbfe56ea4970b2c4adce15718288b29099e8fa1e4d82c5eac30a45a67c300c2,55910600,9,False,True,fb69cb33e966a72bb713757428c84f384eb5ad6ea7a64cc9ca8fa5173d62e7df,b8a71edcd1c34c702bdf16bec78d7cc4439a0f31ac20ed3eacd1cb580fd70cba,,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:2609070,Electrophorus voltai,mapped,exact_scientific_name
@@ -3354,7 +3350,6 @@ release_version,gse_id,gsm_id,organism,organism_raw,organism_status,tissue,tissu
 2026-09-17,GSE288607,GSM8770957,Homo sapiens,Homo sapiens,unchanged,lung,lung,unchanged,sarcoidosis,sarcoidosis,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,,,missing,,,missing,,,missing,3923,37082,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,1920,uint8,NONE,1,PASS,2026-09-08T02:41:51.571445+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8770957,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288607,releases/2026-09-17/samples/GSE288607/GSM8770957.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,25960080,bb91720978f5aecec6baf6bb97bfbbc5c41abfe2ad025416ac0a61b4b090b3c6,108507454,9,False,True,8d7c999f6ae7cdba78f5648c81d2141f22062d8924159a6c5c65bb9484329432,6e068006fef760cbd548f8e86945bc3a95d7b666a16f963a78278b1d238b33e5,,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0019338,sarcoidosis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE288607,GSM8770958,Homo sapiens,Homo sapiens,unchanged,lung,lung,unchanged,sarcoidosis,sarcoidosis,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,,,missing,,,missing,,,missing,3332,37082,csr_matrix,int64,obsm/spatial,True,False,[],True,True,1949,2000,uint8,NONE,1,PASS,2026-09-08T02:41:51.571445+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8770958,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288607,releases/2026-09-17/samples/GSE288607/GSM8770958.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,14343672,b9a33546f575d60e2b462adb108d105e90274e3d4d962c23b684b602f2ac3bf1,40231896,9,False,True,9f85729e4137ebcbfefb42ee182cc17f74ec4fa7651da0557a67898d774cc372,b6d212a682801f04dea98f7fecc1db27242989708d7c1a51ee6807b08b49b045,,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0019338,sarcoidosis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE288607,GSM8770959,Homo sapiens,Homo sapiens,unchanged,lung,lung,unchanged,sarcoidosis,sarcoidosis,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,,,missing,,,missing,,,missing,2285,37082,csr_matrix,int64,obsm/spatial,True,False,[],True,True,8192,7647,uint8,NONE,1,PASS,2026-09-08T02:41:51.571445+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8770959,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288607,releases/2026-09-17/samples/GSE288607/GSM8770959.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,86576035,f8cc3087030f1d60f05cb9098025c1114be671140385786adad62e592894d560,251870029,9,False,True,66433c6e2c068f56eebabd6930d03211eda213488fd7d8fb0c0a9105835c53ba,305eab023e938d1fa04dbb78d1b5380a301fb529ac1ea2d4924912ab3f8a08cb,,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0019338,sarcoidosis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
-2026-09-17,GSE288607,GSM8770960,Homo sapiens,Homo sapiens,unchanged,lung,lung,unchanged,sarcoidosis,sarcoidosis,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,,,missing,,,missing,,,missing,4992,37082,csr_matrix,int64,obsm/spatial,True,False,[],True,True,7926,8192,uint8,NONE,1,PASS,2026-09-06T00:35:00.602681+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8770960,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288607,releases/2026-09-17/samples/GSE288607/GSM8770960.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,122278284,a96b19424f883ea89414f7bbf2c5294788ed57482d8ab2c42254922d16107a79,389603738,9,False,True,d8799771a2315442848138a7762d98bdec87ca7953e4ac8e4b9f73e11d80201b,ff46cd2b7f5f24c67c59e7a756298af0ab46c41a950da739af46af7c86bc62dd,,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0019338,sarcoidosis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE288607,GSM8770961,Homo sapiens,Homo sapiens,unchanged,lung,lung,unchanged,sarcoidosis,sarcoidosis,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL18573,GPL18573,unchanged,,,missing,,,missing,,,missing,3043,37082,csr_matrix,int64,obsm/spatial,True,False,[],True,True,19120,18141,uint8,NONE,1,PASS,2026-09-08T02:41:51.571445+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8770961,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288607,releases/2026-09-17/samples/GSE288607/GSM8770961.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,739492350,ef356c514bf9eba69ea70353fbad343361add990c2abeef2bd01998c0e069754,1183077294,9,False,True,010cd816d3f44a88242e3d3afbe2445693dd91ec4991ba1613ef476c42497067,200818f1baced03b0ef24929bbc75d472c4e0f487cc676c28c137a441353aaf7,,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0019338,sarcoidosis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE288607,GSM8770962,Homo sapiens,Homo sapiens,unchanged,lung,lung,unchanged,sarcoidosis,sarcoidosis,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL18573,GPL18573,unchanged,,,missing,,,missing,,,missing,4112,37082,csr_matrix,int64,obsm/spatial,True,False,[],True,True,17704,16663,uint8,NONE,1,PASS,2026-09-08T02:41:51.571445+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8770962,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288607,releases/2026-09-17/samples/GSE288607/GSM8770962.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,792145653,22f8164a236419c19f5a8b3a48ffe175247b6175c05a62aa98872dfab3a72245,1078320741,9,False,True,3e554d49ec919338bbbe828f33ea6c4eb7080c3a01ef64fa69ee73829895331c,6df56a37ae92ac7e79449b39281a37b9312ff5100fa9b01f8ef57848c132d40e,,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0019338,sarcoidosis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE288758,GSM8774701,Homo sapiens,Homo sapiens,unchanged,lung,Lung,normalized,non-small cell lung cancer,non-small cell lung cancer,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium HD,Visium HD,normalized,GPL34284,GPL34284,unchanged,H&E,H&E,unchanged,,,missing,41152910,41152910,unchanged,67850,18085,csr_matrix,float64,"obs/x,obs/y",True,False,[],True,True,25074,21755,uint8,NONE,1,PASS,2026-09-06T01:25:27.617022+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8774701,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288758,releases/2026-09-17/samples/GSE288758/GSM8774701.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,909352465,0d676f18d23ceed35d04027331992b75ecd796d5f3f5a4d6af2e52e0e093d49e,1709035357,9,False,True,14699b84b8bddeae8fc7e59ba5826a417392feea88f9a8376513fd00510fb16f,c946cf383f035bb48e84fd89f3967d8b0a61988c9038ac7dfdd75542d60a091b,,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0005233,non-small cell lung carcinoma,MONDO,mapped,exact_synonym,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
@@ -3468,7 +3463,6 @@ release_version,gse_id,gsm_id,organism,organism_raw,organism_status,tissue,tissu
 2026-09-17,GSE294669,GSM8915498,Homo sapiens,Homo sapiens,unchanged,pancreas,pancreas,unchanged,chronic pancreatitis,chronic pancreatitis,unmapped,,,missing,,,missing,,,missing,treatment naive,treatment naive,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,,,missing,,,missing,40569674,40569674,unchanged,2397,17943,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,1215,uint8,NONE,1,PASS,2026-09-07T11:22:53.696169+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8915498,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294669,releases/2026-09-17/samples/GSE294669/GSM8915498.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,25212422,4380aed023a7164be0dd3b3b0e32f8a89c79329923b7484556b8e38176f0cc84,191265363,9,False,True,7c3e2e2dd88d97f2b3ec4f5b9f4d11d8604669a5aab16a77b26c886b54862260,d2c5a22760bc88671c0bddfeb9323f8dd12bd80958ae0a2da4b69c1c1d7fcc35,,UBERON:0001264,pancreas,UBERON,mapped,exact_label,,MONDO:0005003,chronic pancreatitis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE294669,GSM8915499,Homo sapiens,Homo sapiens,unchanged,pancreas,pancreas,unchanged,,,missing,,,missing,,,missing,,,missing,treatment naive,treatment naive,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,,,missing,,,missing,40569674,40569674,unchanged,2857,17943,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,1215,uint8,NONE,1,PASS,2026-09-06T01:40:38.814413+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8915499,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294669,releases/2026-09-17/samples/GSE294669/GSM8915499.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,28673284,894286de7012b912d3520f2fd72edd06b1ccde77a00d1a4a73701893757c4067,212410807,9,False,True,ebea1e7fca48a25c20d6bec38346dad40d3b4fff4169a459fa17dc001a71e93a,77adc3e4353bb27a13e6fdf5594eb2090fcf88c2e97ab65bea2c0f6d2246c095,,UBERON:0001264,pancreas,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE294669,GSM8915500,Homo sapiens,Homo sapiens,unchanged,pancreas,pancreas,unchanged,pancreatic ductal adenocarcinoma,pancreatic ductal adenocarcinoma,unchanged,,,missing,,,missing,,,missing,treatment naive,treatment naive,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,,,missing,,,missing,40569674,40569674,unchanged,3009,17943,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,1215,uint8,NONE,1,PASS,2026-09-07T11:22:53.696169+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8915500,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294669,releases/2026-09-17/samples/GSE294669/GSM8915500.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,28918389,7509bbc02828a7964f876da69ec6a13ae18cb2299ddb3e379a03fbed24703f3e,214906971,9,False,True,b1f215d833aae7030b389e4aa081fc76ba97caa232f786896a1fc94114980382,fc71dd97cbee6ec4bca98323645f45897238e069a57659ab68fbd618d879463f,,UBERON:0001264,pancreas,UBERON,mapped,exact_label,,MONDO:0005184,pancreatic ductal adenocarcinoma,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
-2026-09-17,GSE294844,GSM8925216,human skin metagenome,human skin metagenome,unmapped,skin,skin,unchanged,actinic keratosis,actinic keratosis,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium v2 CytAssist Spatial Gene Expression,Visium v2 CytAssist Spatial Gene Expression,normalized,GPL35769,GPL35769,unchanged,,,missing,,,missing,,,missing,1435,18085,csr_matrix,int32,obsm/spatial,True,False,[],True,True,3000,3000,uint8,LZW,1,PASS,2026-09-06T02:54:12.053096+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8925216,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294844,releases/2026-09-17/samples/GSE294844/GSM8925216.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,24849641,fbdce62ac8233aa2fd0b7b017e2d02da2c451897cb1209c0f0d8c6d61ecc619b,26108655,9,False,True,7f4e039c15bbd08acce862bcc9ba20c2df5b17b3a3053c29b5f8459562e93cfc,5aecfa240487be96289b7cc0a34e5e481f91db2714a4b938b2d44ec6aceccf17,,UBERON:0000014,zone of skin,UBERON,mapped,exact_synonym,,MONDO:0005173,actinic keratosis,MONDO,mapped,exact_label,,NCBITaxon:539655,human skin metagenome,mapped,exact_scientific_name
 2026-09-17,GSE294844,GSM8925218,human skin metagenome,human skin metagenome,unmapped,skin,skin,unchanged,actinic keratosis,actinic keratosis,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium v2 CytAssist Spatial Gene Expression,Visium v2 CytAssist Spatial Gene Expression,normalized,GPL35769,GPL35769,unchanged,,,missing,,,missing,,,missing,1706,18085,csr_matrix,int32,obsm/spatial,True,False,[],True,True,3000,3000,uint8,DEFLATE,1,PASS,2026-09-06T02:28:28.511102+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8925218,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294844,releases/2026-09-17/samples/GSE294844/GSM8925218.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,31748762,8c639a861913484e6d74ac1df7f357f77b4f2b76ae1d2bc678d292173b60a8aa,67682784,9,False,True,f08e8b8910db704b81ac4370da1f87492af02b4125defaf28a5cd194399cd503,ad0f8dbff97534ffc6644a3a9800f8dfa02286a8fd8ccfe28b34729fb716c67c,,UBERON:0000014,zone of skin,UBERON,mapped,exact_synonym,,MONDO:0005173,actinic keratosis,MONDO,mapped,exact_label,,NCBITaxon:539655,human skin metagenome,mapped,exact_scientific_name
 2026-09-17,GSE294844,GSM8925219,human skin metagenome,human skin metagenome,unmapped,skin,skin,unchanged,actinic keratosis,actinic keratosis,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium v2 CytAssist Spatial Gene Expression,Visium v2 CytAssist Spatial Gene Expression,normalized,GPL35769,GPL35769,unchanged,,,missing,,,missing,,,missing,921,18085,csr_matrix,int32,obsm/spatial,True,False,[],True,True,3000,3000,uint8,DEFLATE,1,PASS,2026-09-06T02:28:28.511102+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8925219,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294844,releases/2026-09-17/samples/GSE294844/GSM8925219.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,30476481,1a474dc168c400f210bc313522368040f1b3c38fabd3bb23fce4ba78401be577,62830573,9,False,True,98d9177886d4e97f71f6003a92cb1da9f57f076a2f11abbb36769165766eeaf8,9e43ca2464196810062a4ec3e566b8865fffa46353d58a920cf17b40847cbbb3,,UBERON:0000014,zone of skin,UBERON,mapped,exact_synonym,,MONDO:0005173,actinic keratosis,MONDO,mapped,exact_label,,NCBITaxon:539655,human skin metagenome,mapped,exact_scientific_name
 2026-09-17,GSE294844,GSM8925221,human skin metagenome,human skin metagenome,unmapped,skin,skin,unchanged,actinic keratosis,actinic keratosis,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium v2 CytAssist Spatial Gene Expression,Visium v2 CytAssist Spatial Gene Expression,normalized,GPL35769,GPL35769,unchanged,,,missing,,,missing,,,missing,2289,18085,csr_matrix,int32,obsm/spatial,True,False,[],True,True,3000,3000,uint8,DEFLATE,1,PASS,2026-09-06T02:28:28.511102+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8925221,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294844,releases/2026-09-17/samples/GSE294844/GSM8925221.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,29461140,a7ad0e1dd7d9307d1174007fc4d41b69305f2bf8d72379d06896887a163806ad,49178919,9,False,True,38a5e9ba2aa8b3072a636f50bfc8305b7299973ce0f9b46c7037ac8fac6a01fb,cbf119266bad8d42003e2d6e8ddfe38cbc5b481e97fff1f0dadff40cb3b369f9,,UBERON:0000014,zone of skin,UBERON,mapped,exact_synonym,,MONDO:0005173,actinic keratosis,MONDO,mapped,exact_label,,NCBITaxon:539655,human skin metagenome,mapped,exact_scientific_name
@@ -3776,8 +3770,6 @@ release_version,gse_id,gsm_id,organism,organism_raw,organism_status,tissue,tissu
 2026-09-17,GSE301720,GSM9087754,Homo sapiens,Homo sapiens,unchanged,Oral Cavity,Oral Cavity,unmapped,head and neck cancer,head and neck cancer,unmapped,,,missing,,,missing,,,missing,Non-Responder,Non-Responder,unchanged,10x Genomics Visium,10x Visium,normalized,GPL34284,GPL34284,unchanged,H&E,H&E,unchanged,,,missing,41837744,41837744,unchanged,2608,17943,csr_matrix,int64,"obs/x,obs/y",True,False,[],True,True,2000,1923,uint8,LZW,1,PASS,2026-09-08T02:45:31.928851+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9087754,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE301720,releases/2026-09-17/samples/GSE301720/GSM9087754.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,28341034,db858df48fba78bb848b5ca87d92773fcf6ba306424f90139b3f5d9d679125d5,31020916,9,False,True,afde8d3112ff19faf45ec8b5392063940be5760b2d44903fd09bec44f8fba984,f65a88c5f20149396de2bb9aec395e1005aa898850b89f2c584fa444e760c801,,UBERON:0000167,oral cavity,UBERON,mapped,exact_label,,MONDO:0005627,head and neck cancer,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE301973,GSM9093278,Homo sapiens,Homo sapiens,unchanged,lung,Lung,normalized,EGFR-mutated NSCLC,EGFR-mutated NSCLC,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium HD,10x Visium HD,normalized,GPL34284,GPL34284,unchanged,H&E,H&E,unchanged,,,missing,41152910,41152910,unchanged,45661,18111,csr_matrix,float64,obsm/spatial,True,False,[],True,True,22143,28735,uint8,NONE,1,PASS,2026-09-06T02:52:56.338110+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9093278,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE301973,releases/2026-09-17/samples/GSE301973/GSM9093278.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,984069794,48520a26e35de33f6ce52dcd7bc79e2b5f225bc043ff59d6b18f5a228444fda5,1992865624,9,False,True,4c2f041551e62c4b5f8596c72e9349cca0dc9c6aa60979db412325475b8072e7,603b8c0a15c6ddff33d5f5b4a73de19c0969e9ac6b7ffd452189be05ab7d1ec3,,UBERON:0002048,lung,UBERON,mapped,exact_label,,,,,unmapped,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE301973,GSM9093279,Homo sapiens,Homo sapiens,unchanged,lung,Lung,normalized,EGFR-mutated NSCLC,EGFR-mutated NSCLC,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium HD,10x Visium HD,normalized,GPL34284,GPL34284,unchanged,H&E,H&E,unchanged,,,missing,41152910,41152910,unchanged,165630,18111,csr_matrix,float64,obsm/spatial,True,False,[],True,True,23491,23683,uint8,NONE,1,PASS,2026-09-06T01:25:27.617022+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9093279,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE301973,releases/2026-09-17/samples/GSE301973/GSM9093279.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,1455093986,0ac69ccdd99d5fc69d028cb146187281bc94bff720e26382f7aa62a01d70fbe5,1766552390,9,False,True,d3b0b4cb25bdfab6b3cc3a84b6124844ae01ac12260c3eba699aa3e389b4d9cb,8376f5107f9cf0366e184a89e482d4334632efb3e5fb8fd9caaffabcaf5333e4,,UBERON:0002048,lung,UBERON,mapped,exact_label,,,,,unmapped,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
-2026-09-17,GSE302160,GSM9097318,Homo sapiens,Homo sapiens,unchanged,brain:primary motor cortex,brain:primary motor cortex,unmapped,PSP (low seeder),PSP (low seeder),unmapped,,,missing,,,missing,,,missing,low seeder,low seeder,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,,,missing,,,missing,41476155,41476155,unchanged,4763,18085,csr_matrix,int64,"obs/x,obs/y",True,False,[],True,True,3000,3000,uint8,LZW,1,PASS,2026-09-06T02:54:12.053096+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9097318,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE302160,releases/2026-09-17/samples/GSE302160/GSM9097318.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,44791018,931e400c6dceb6a0c2c3fc8ba014dd75bf72baefa3243b7b219c9cc5db4fa781,138349724,9,False,True,3133cc81ac5f037d9505dbc80f0cfff04c0629a87c11bf3c504e5ff6dc8c2386,9b1eb91bf693c6e5735b1bb5e95c945483abe85496c3a6f26e0b2b65a8c4839d,,,,,unmapped,,,,,,unmapped,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
-2026-09-17,GSE302160,GSM9097320,Homo sapiens,Homo sapiens,unchanged,brain:primary motor cortex,brain:primary motor cortex,unmapped,PSP (high seeder),PSP (high seeder),unmapped,,,missing,,,missing,,,missing,high seeder,high seeder,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,,,missing,,,missing,41476155,41476155,unchanged,4690,18085,csr_matrix,int64,"obs/x,obs/y",True,False,[],True,True,3000,3000,uint8,LZW,1,PASS,2026-09-06T02:54:12.053096+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9097320,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE302160,releases/2026-09-17/samples/GSE302160/GSM9097320.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,41646497,8805168e82cfde9347872adf61819aac08005aad1352a147fe8380b3c76584e6,137722823,9,False,True,87ae2566105f644ae1821fc3ccd91ff47a1acff6d9e77d21a7dac2796870a73b,a1993d23c7249aa298b8c65cccc9ee4c0bda21aadb99511d66efd701fc6e20e2,,,,,unmapped,,,,,,unmapped,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE302569,GSM9106293,Homo sapiens,Homo sapiens,unchanged,ileum,ileum,unmapped,Crohn's disease,Crohn's disease,unmapped,,,missing,,,missing,,,missing,strictured fibrotic ileum,strictured fibrotic ileum,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,,,missing,,,missing,41344440,41344440,unchanged,520101,18085,csr_matrix,int64,obsm/spatial,True,False,[],True,True,4792,6000,uint8,NONE,1,PASS,2026-09-06T01:25:27.617022+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9106293,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE302569,releases/2026-09-17/samples/GSE302569/GSM9106293.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,282767889,336570c7cd549021bf54e25656f9adc083befa2966abe6816ad4788fcc4315f9,314941481,9,False,True,7fe1ad186bfdba50ab90ede62b2e1aa54c01cd421466192ed84de981369ee1c5,11611a8d55cd34fc9184ca69beff1e8008228a5f322cc62878a0701e3f466a04,,UBERON:0002116,ileum,UBERON,mapped,exact_label,,MONDO:0005011,Crohn disease,MONDO,mapped,exact_synonym,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE302569,GSM9106294,Homo sapiens,Homo sapiens,unchanged,ileum,ileum,unmapped,Crohn's disease,Crohn's disease,unmapped,,,missing,,,missing,,,missing,non-strictured non-fibrotic ileum,non-strictured non-fibrotic ileum,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,,,missing,,,missing,41344440,41344440,unchanged,468841,18085,csr_matrix,int64,obsm/spatial,True,False,[],True,True,5148,6000,uint8,NONE,1,PASS,2026-09-06T01:25:27.617022+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9106294,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE302569,releases/2026-09-17/samples/GSE302569/GSM9106294.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,249254588,53e6c7c11fc37cb0b032ec89c8db1416bf076c95d1bb445501e133415ff81930,292607017,9,False,True,1041973e897a5b0785d76984c73e922b84755a22d958d38d4b0fe4c25327fd78,91929e09077d65d8d7eee7f375f0bfc87012f90d70121af1df42baf9167d2e2c,,UBERON:0002116,ileum,UBERON,mapped,exact_label,,MONDO:0005011,Crohn disease,MONDO,mapped,exact_synonym,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE302815,GSM9111711,Mus musculus,Mus musculus,unchanged,liver,liver,unchanged,,,missing,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL24247,GPL24247,unchanged,H&E,H&E,unchanged,,,missing,41706888,41706888,unchanged,2082,32285,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,1855,uint8,NONE,1,PASS,2026-09-06T01:25:27.617022+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9111711,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE302815,releases/2026-09-17/samples/GSE302815/GSM9111711.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,20078845,fcd3f711a80847d9fc434a2692cfe8d64e28a63dee90d17edbba34e14652ec7b,87811551,9,False,True,ca7425b4074c8b60410f22b6ad154be4544a91958a1fcbd5b14cef2614793908,f214fe731bb8e51235ce9c676ff721870788abf8eab81424b68e0900059fdca5,,UBERON:0002107,liver,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
@@ -4012,7 +4004,6 @@ release_version,gse_id,gsm_id,organism,organism_raw,organism_status,tissue,tissu
 2026-09-17,GSE310610,GSM9304482,Homo sapiens,Homo sapiens,unchanged,lung,lung,unchanged,,,missing,,,missing,18 weeks,18 weeks,unchanged,,,missing,No Lung Disease,No Lung Disease,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,H&E,H&E,unchanged,,,missing,41484334,41484334,unchanged,3251,17943,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,2000,uint8,LZW,1,PASS,2026-09-08T02:47:12.416572+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9304482,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE310610,releases/2026-09-17/samples/GSE310610/GSM9304482.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,26733023,a14f68d6189298d62118c3d334a604eb7ea2052762e69644d9804f7e7b8b40f1,28908835,9,False,True,7695c3dd7897e55d8942e3866a41375892f3b1816247247eae487e58018a5bdc,83ededcca50363c2d51ae2ce6e20ad6a8e2d163ba8d13ec57f79d9f161f094c3,,UBERON:0002048,lung,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE310610,GSM9304483,Homo sapiens,Homo sapiens,unchanged,lung,lung,unchanged,Trisomy 21,Trisomy 21,unmapped,,,missing,19 weeks,19 weeks,unchanged,,,missing,Trisomy 21,Trisomy 21,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,H&E,H&E,unchanged,,,missing,41484334,41484334,unchanged,4558,17943,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,2000,uint8,LZW,1,PASS,2026-09-08T02:47:12.416572+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9304483,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE310610,releases/2026-09-17/samples/GSE310610/GSM9304483.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,80374663,771801a8324609ddb2538cfde49eb6afaf2ce3c23e9da3d7eae295b8d29c8cbc,93666532,9,False,True,8dac056b71e73cc59bcf03e785e5e92be0e373b5f6fc9eaca1fc96d03e640277,d216999cefe98496f529b14c9b159bec857448e3667ce1b663aee3c694fce8b7,,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0700126,trisomy 21,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE310610,GSM9304484,Homo sapiens,Homo sapiens,unchanged,lung,lung,unchanged,,,missing,,,missing,20 weeks,20 weeks,unchanged,,,missing,No Lung Disease,No Lung Disease,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,H&E,H&E,unchanged,,,missing,41484334,41484334,unchanged,4399,17943,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,2000,uint8,LZW,1,PASS,2026-09-08T02:47:12.416572+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9304484,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE310610,releases/2026-09-17/samples/GSE310610/GSM9304484.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,55872516,f29ad2cf2dff8102f378c06d4f9dc05d91fbe30144a1fca6716b1df416a24dc7,59225683,9,False,True,404413ba4479ba44edbf8a88143e07cc8583b16e791b48304029e07a38935134,2ec3764a8ef30a05505b804fb4c282186d00d988eea210de9d3947fc0699f403,,UBERON:0002048,lung,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
-2026-09-17,GSE311123,GSM9317397,Homo sapiens,Homo sapiens,unchanged,Distal femur,Distal femur,unmapped,Giant Cell Tumor of Bone,Giant Cell Tumor of Bone,unmapped,male,Male,normalized,,,missing,,,missing,surgical curettage,surgical curettage,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,H&E,H&E,unchanged,,,missing,41872383,41872383,unchanged,4992,18085,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,1499,uint8,LZW,1,PASS,2026-09-06T02:52:56.338110+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9317397,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE311123,releases/2026-09-17/samples/GSE311123/GSM9317397.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,75916073,d0d0c083642d198e3c5cec93b3563c8d3c6d215f8b8c1953216d958749710260,83590448,9,False,True,fb6ad8a9ece3ddb1a86279e1765c7126bd45428dd56a797277f2b187531e232e,51297b346c5c0dcec223e67cf69970cdcc13aeb30e4066361980376b4c221bb5,,,,,unmapped,,,MONDO:0005674,bone giant cell tumor,MONDO,mapped,exact_synonym,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE311294,GSM9322957,Homo sapiens,Homo sapiens,unchanged,primary colorectal cancer,primary colorectal cancer,unmapped,colorectal cancer,colorectal cancer,unchanged,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL34281,GPL34281,unchanged,,,missing,,,missing,,,missing,3742,18085,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,2000,uint8,LZW,1,PASS,2026-09-06T02:52:56.338110+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9322957,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE311294,releases/2026-09-17/samples/GSE311294/GSM9322957.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,36353249,cc45ac81e69d42b9c6ecb3f1a1fbf104925253891b8848873d2163130ed2160e,38022249,9,False,True,3ed48c349832558c02cd2b73a3285dcbfc0fe3a3376caf63ee21d4790992e2d6,a0b97591f12e7b603cef18278ef0f6f063bd8b08faad07cfc75b8be488375793,,,,,unmapped,,,MONDO:0005575,colorectal cancer,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE311294,GSM9322958,Homo sapiens,Homo sapiens,unchanged,primary colorectal cancer,primary colorectal cancer,unmapped,colorectal cancer,colorectal cancer,unchanged,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL34281,GPL34281,unchanged,,,missing,,,missing,,,missing,4732,18085,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,2000,uint8,LZW,1,PASS,2026-09-06T02:52:56.338110+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9322958,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE311294,releases/2026-09-17/samples/GSE311294/GSM9322958.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,46553352,433483d1b49b4dbfc4ff61e785c7241a990863632220839c68a1933abbb8fc7b,48238581,9,False,True,c938a3063347eaf5146fccd089a434077d41736417e6e83b8cbb76419e8ebd45,f9d50ae7ae7fffd55d411ae39bfdd5e3a9422aba2ac178d445f4f0a80a9baeed,,,,,unmapped,,,MONDO:0005575,colorectal cancer,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE311294,GSM9322959,Homo sapiens,Homo sapiens,unchanged,primary colorectal cancer,primary colorectal cancer,unmapped,colorectal cancer,colorectal cancer,unchanged,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL34281,GPL34281,unchanged,,,missing,,,missing,,,missing,3673,18085,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,1299,uint8,LZW,1,PASS,2026-09-06T02:52:56.338110+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9322959,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE311294,releases/2026-09-17/samples/GSE311294/GSM9322959.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,17357204,a5625114b0252660a17fae701ec5427c2e7f7149601903a16d8ae78417618f59,18624189,9,False,True,2beb33f2d03121671a4f54f8f52bb8d763e917e0b330d9536ab38afb9a0a56af,5a5247a7af37b0c24cb662a5ad82ca39105629460447dc95ac1c2c253a70604d,,,,,unmapped,,,MONDO:0005575,colorectal cancer,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name

 2026-09-17,GSE228982,GSM7146858,Homo sapiens,Homo sapiens,unchanged,synovial joint,synovial joint,unmapped,psoriatic arthritis,psoriatic arthritis,unmapped,,,missing,,,missing,,,missing,psoriatic arthritis,psoriatic arthritis,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,H&E,H&E,unchanged,,,missing,38396288,38396288,unchanged,1368,36601,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,2000,RGB,source-defined,1,PASS,2026-09-06T02:36:30.890334+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7146858,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE228982,releases/2026-09-17/samples/GSE228982/GSM7146858.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,14459689,abe9aebbf85193c5887b5cf766e506870856f80fb23841f7b8e690b8025c88bd,67512803,9,False,True,e81887e97c603a99dbf42590172a057d2c5de3a0ec02bcbe5333e6eef3445ca6,dafa699f7c717b8d641beefc3d99fa264f601716ed10333b91e1a3ad0f893649,PNG,UBERON:0002217,synovial joint,UBERON,mapped,exact_label,,MONDO:0011849,psoriatic arthritis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE228982,GSM7146859,Homo sapiens,Homo sapiens,unchanged,synovial joint,synovial joint,unmapped,healthy,healthy,unchanged,,,missing,,,missing,,,missing,healthy,healthy,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,H&E,H&E,unchanged,,,missing,38396288,38396288,unchanged,927,36601,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,2000,RGB,source-defined,1,PASS,2026-09-06T02:36:30.890334+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7146859,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE228982,releases/2026-09-17/samples/GSE228982/GSM7146859.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,7837936,242c2ded166d5fd7cb788ed2d20155f0cc4873e5c9b0c5aad8a67ba8b943b797,24848062,9,False,True,4ac1d994dcd3bf7d3e6cb17c7541ed1637837408acfa2aaf68d63bb31eb1ffd4,a8c2786540fe66d4ba77f8f519930d3e5700da804e6a8ead29b703854e599884,PNG,UBERON:0002217,synovial joint,UBERON,mapped,exact_label,,,,,control_or_non_disease,curated_non_disease_state,control label,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE228982,GSM7146860,Homo sapiens,Homo sapiens,unchanged,synovial joint,synovial joint,unmapped,healthy,healthy,unchanged,,,missing,,,missing,,,missing,healthy,healthy,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,H&E,H&E,unchanged,,,missing,38396288,38396288,unchanged,899,36601,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,2000,RGB,source-defined,1,PASS,2026-09-06T02:36:30.890334+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7146860,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE228982,releases/2026-09-17/samples/GSE228982/GSM7146860.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,8408228,e31f10d7b7d31408f00b8ff0c6bbcc421e9323a4545c0d0711495be473277255,29708747,9,False,True,06343bcf0dbf96877a4ec17236a70c1c104d1f74d10c2233eeab1d4954522b2a,9c09200774f615c19c0283b1ae5a538e354be61ab09362ddb8e2b39e82734d45,PNG,UBERON:0002217,synovial joint,UBERON,mapped,exact_label,,,,,control_or_non_disease,curated_non_disease_state,control label,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE229508,GSM7164655,Mus musculus,Mus musculus,unchanged,forebrain,Forebrain,normalized,,,missing,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL21273,GPL21273,unchanged,,,missing,,,missing,40210990,40210990,unchanged,979,32285,csr_matrix,int32,"obs/x,obs/y",True,False,[],True,True,2000,1968,uint8,NONE,1,PASS,2026-09-06T02:13:07.411023+00:00,full-review-revision-110,False,False,B,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7164655,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE229508,releases/2026-09-17/samples/GSE229508/GSM7164655.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,20278601,9bf72e3e38405260e7d9a868a0b693a423a8e88248e17495b40ca787d6a248d2,32497425,9,False,True,2e422c5c690aa02a9b3bcf89f753d03a3523d30d81dd9d86e7f602a2ea49fe46,9dc8d2e23f89a5cfc322221690f0ca6951ec1624d3a4e90e2b32c3b8b4e1a29b,,UBERON:0001890,forebrain,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 2026-09-17,GSE229635,GSM7169587,Electrophorus voltai,Electrophorus voltai,unmapped,the main electric organ,the main electric organ,unmapped,,,missing,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL33292,GPL33292,unchanged,H&E,H&E,unchanged,,,missing,,,missing,2677,23221,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,2000,uint8,LZW,1,PASS,2026-09-06T02:36:30.890334+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7169587,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE229635,releases/2026-09-17/samples/GSE229635/GSM7169587.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,14556016,97a96df1623b8957b3f5c5c7405cc79181f73a415775a0add83715571acd496b,54713832,9,False,True,99d58ed0fc0d024ec14f8da1425c42d28671e86cf77f7a2ded71c67a93b8dd47,1967a2f5c0ee515c9f19db3f89d98b297e5f3f1a90141162f0853d122da163e3,,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:2609070,Electrophorus voltai,mapped,exact_scientific_name
 2026-09-17,GSE229635,GSM7169588,Electrophorus voltai,Electrophorus voltai,unmapped,the main electric organ,the main electric organ,unmapped,,,missing,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL33292,GPL33292,unchanged,H&E,H&E,unchanged,,,missing,,,missing,2862,23221,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,2000,uint8,LZW,1,PASS,2026-09-06T02:36:30.890334+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7169588,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE229635,releases/2026-09-17/samples/GSE229635/GSM7169588.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,15126641,fbbfe56ea4970b2c4adce15718288b29099e8fa1e4d82c5eac30a45a67c300c2,55910600,9,False,True,fb69cb33e966a72bb713757428c84f384eb5ad6ea7a64cc9ca8fa5173d62e7df,b8a71edcd1c34c702bdf16bec78d7cc4439a0f31ac20ed3eacd1cb580fd70cba,,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:2609070,Electrophorus voltai,mapped,exact_scientific_name
 2026-09-17,GSE288607,GSM8770957,Homo sapiens,Homo sapiens,unchanged,lung,lung,unchanged,sarcoidosis,sarcoidosis,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,,,missing,,,missing,,,missing,3923,37082,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,1920,uint8,NONE,1,PASS,2026-09-08T02:41:51.571445+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8770957,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288607,releases/2026-09-17/samples/GSE288607/GSM8770957.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,25960080,bb91720978f5aecec6baf6bb97bfbbc5c41abfe2ad025416ac0a61b4b090b3c6,108507454,9,False,True,8d7c999f6ae7cdba78f5648c81d2141f22062d8924159a6c5c65bb9484329432,6e068006fef760cbd548f8e86945bc3a95d7b666a16f963a78278b1d238b33e5,,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0019338,sarcoidosis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE288607,GSM8770958,Homo sapiens,Homo sapiens,unchanged,lung,lung,unchanged,sarcoidosis,sarcoidosis,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,,,missing,,,missing,,,missing,3332,37082,csr_matrix,int64,obsm/spatial,True,False,[],True,True,1949,2000,uint8,NONE,1,PASS,2026-09-08T02:41:51.571445+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8770958,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288607,releases/2026-09-17/samples/GSE288607/GSM8770958.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,14343672,b9a33546f575d60e2b462adb108d105e90274e3d4d962c23b684b602f2ac3bf1,40231896,9,False,True,9f85729e4137ebcbfefb42ee182cc17f74ec4fa7651da0557a67898d774cc372,b6d212a682801f04dea98f7fecc1db27242989708d7c1a51ee6807b08b49b045,,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0019338,sarcoidosis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE288607,GSM8770959,Homo sapiens,Homo sapiens,unchanged,lung,lung,unchanged,sarcoidosis,sarcoidosis,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,,,missing,,,missing,,,missing,2285,37082,csr_matrix,int64,obsm/spatial,True,False,[],True,True,8192,7647,uint8,NONE,1,PASS,2026-09-08T02:41:51.571445+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8770959,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288607,releases/2026-09-17/samples/GSE288607/GSM8770959.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,86576035,f8cc3087030f1d60f05cb9098025c1114be671140385786adad62e592894d560,251870029,9,False,True,66433c6e2c068f56eebabd6930d03211eda213488fd7d8fb0c0a9105835c53ba,305eab023e938d1fa04dbb78d1b5380a301fb529ac1ea2d4924912ab3f8a08cb,,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0019338,sarcoidosis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE288607,GSM8770961,Homo sapiens,Homo sapiens,unchanged,lung,lung,unchanged,sarcoidosis,sarcoidosis,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL18573,GPL18573,unchanged,,,missing,,,missing,,,missing,3043,37082,csr_matrix,int64,obsm/spatial,True,False,[],True,True,19120,18141,uint8,NONE,1,PASS,2026-09-08T02:41:51.571445+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8770961,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288607,releases/2026-09-17/samples/GSE288607/GSM8770961.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,739492350,ef356c514bf9eba69ea70353fbad343361add990c2abeef2bd01998c0e069754,1183077294,9,False,True,010cd816d3f44a88242e3d3afbe2445693dd91ec4991ba1613ef476c42497067,200818f1baced03b0ef24929bbc75d472c4e0f487cc676c28c137a441353aaf7,,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0019338,sarcoidosis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE288607,GSM8770962,Homo sapiens,Homo sapiens,unchanged,lung,lung,unchanged,sarcoidosis,sarcoidosis,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL18573,GPL18573,unchanged,,,missing,,,missing,,,missing,4112,37082,csr_matrix,int64,obsm/spatial,True,False,[],True,True,17704,16663,uint8,NONE,1,PASS,2026-09-08T02:41:51.571445+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8770962,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288607,releases/2026-09-17/samples/GSE288607/GSM8770962.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,792145653,22f8164a236419c19f5a8b3a48ffe175247b6175c05a62aa98872dfab3a72245,1078320741,9,False,True,3e554d49ec919338bbbe828f33ea6c4eb7080c3a01ef64fa69ee73829895331c,6df56a37ae92ac7e79449b39281a37b9312ff5100fa9b01f8ef57848c132d40e,,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0019338,sarcoidosis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE288758,GSM8774701,Homo sapiens,Homo sapiens,unchanged,lung,Lung,normalized,non-small cell lung cancer,non-small cell lung cancer,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium HD,Visium HD,normalized,GPL34284,GPL34284,unchanged,H&E,H&E,unchanged,,,missing,41152910,41152910,unchanged,67850,18085,csr_matrix,float64,"obs/x,obs/y",True,False,[],True,True,25074,21755,uint8,NONE,1,PASS,2026-09-06T01:25:27.617022+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8774701,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288758,releases/2026-09-17/samples/GSE288758/GSM8774701.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,909352465,0d676f18d23ceed35d04027331992b75ecd796d5f3f5a4d6af2e52e0e093d49e,1709035357,9,False,True,14699b84b8bddeae8fc7e59ba5826a417392feea88f9a8376513fd00510fb16f,c946cf383f035bb48e84fd89f3967d8b0a61988c9038ac7dfdd75542d60a091b,,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0005233,non-small cell lung carcinoma,MONDO,mapped,exact_synonym,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE294669,GSM8915498,Homo sapiens,Homo sapiens,unchanged,pancreas,pancreas,unchanged,chronic pancreatitis,chronic pancreatitis,unmapped,,,missing,,,missing,,,missing,treatment naive,treatment naive,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,,,missing,,,missing,40569674,40569674,unchanged,2397,17943,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,1215,uint8,NONE,1,PASS,2026-09-07T11:22:53.696169+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8915498,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294669,releases/2026-09-17/samples/GSE294669/GSM8915498.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,25212422,4380aed023a7164be0dd3b3b0e32f8a89c79329923b7484556b8e38176f0cc84,191265363,9,False,True,7c3e2e2dd88d97f2b3ec4f5b9f4d11d8604669a5aab16a77b26c886b54862260,d2c5a22760bc88671c0bddfeb9323f8dd12bd80958ae0a2da4b69c1c1d7fcc35,,UBERON:0001264,pancreas,UBERON,mapped,exact_label,,MONDO:0005003,chronic pancreatitis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE294669,GSM8915499,Homo sapiens,Homo sapiens,unchanged,pancreas,pancreas,unchanged,,,missing,,,missing,,,missing,,,missing,treatment naive,treatment naive,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,,,missing,,,missing,40569674,40569674,unchanged,2857,17943,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,1215,uint8,NONE,1,PASS,2026-09-06T01:40:38.814413+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8915499,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294669,releases/2026-09-17/samples/GSE294669/GSM8915499.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,28673284,894286de7012b912d3520f2fd72edd06b1ccde77a00d1a4a73701893757c4067,212410807,9,False,True,ebea1e7fca48a25c20d6bec38346dad40d3b4fff4169a459fa17dc001a71e93a,77adc3e4353bb27a13e6fdf5594eb2090fcf88c2e97ab65bea2c0f6d2246c095,,UBERON:0001264,pancreas,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE294669,GSM8915500,Homo sapiens,Homo sapiens,unchanged,pancreas,pancreas,unchanged,pancreatic ductal adenocarcinoma,pancreatic ductal adenocarcinoma,unchanged,,,missing,,,missing,,,missing,treatment naive,treatment naive,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,,,missing,,,missing,40569674,40569674,unchanged,3009,17943,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,1215,uint8,NONE,1,PASS,2026-09-07T11:22:53.696169+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8915500,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294669,releases/2026-09-17/samples/GSE294669/GSM8915500.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,28918389,7509bbc02828a7964f876da69ec6a13ae18cb2299ddb3e379a03fbed24703f3e,214906971,9,False,True,b1f215d833aae7030b389e4aa081fc76ba97caa232f786896a1fc94114980382,fc71dd97cbee6ec4bca98323645f45897238e069a57659ab68fbd618d879463f,,UBERON:0001264,pancreas,UBERON,mapped,exact_label,,MONDO:0005184,pancreatic ductal adenocarcinoma,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE294844,GSM8925218,human skin metagenome,human skin metagenome,unmapped,skin,skin,unchanged,actinic keratosis,actinic keratosis,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium v2 CytAssist Spatial Gene Expression,Visium v2 CytAssist Spatial Gene Expression,normalized,GPL35769,GPL35769,unchanged,,,missing,,,missing,,,missing,1706,18085,csr_matrix,int32,obsm/spatial,True,False,[],True,True,3000,3000,uint8,DEFLATE,1,PASS,2026-09-06T02:28:28.511102+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8925218,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294844,releases/2026-09-17/samples/GSE294844/GSM8925218.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,31748762,8c639a861913484e6d74ac1df7f357f77b4f2b76ae1d2bc678d292173b60a8aa,67682784,9,False,True,f08e8b8910db704b81ac4370da1f87492af02b4125defaf28a5cd194399cd503,ad0f8dbff97534ffc6644a3a9800f8dfa02286a8fd8ccfe28b34729fb716c67c,,UBERON:0000014,zone of skin,UBERON,mapped,exact_synonym,,MONDO:0005173,actinic keratosis,MONDO,mapped,exact_label,,NCBITaxon:539655,human skin metagenome,mapped,exact_scientific_name
 2026-09-17,GSE294844,GSM8925219,human skin metagenome,human skin metagenome,unmapped,skin,skin,unchanged,actinic keratosis,actinic keratosis,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium v2 CytAssist Spatial Gene Expression,Visium v2 CytAssist Spatial Gene Expression,normalized,GPL35769,GPL35769,unchanged,,,missing,,,missing,,,missing,921,18085,csr_matrix,int32,obsm/spatial,True,False,[],True,True,3000,3000,uint8,DEFLATE,1,PASS,2026-09-06T02:28:28.511102+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8925219,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294844,releases/2026-09-17/samples/GSE294844/GSM8925219.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,30476481,1a474dc168c400f210bc313522368040f1b3c38fabd3bb23fce4ba78401be577,62830573,9,False,True,98d9177886d4e97f71f6003a92cb1da9f57f076a2f11abbb36769165766eeaf8,9e43ca2464196810062a4ec3e566b8865fffa46353d58a920cf17b40847cbbb3,,UBERON:0000014,zone of skin,UBERON,mapped,exact_synonym,,MONDO:0005173,actinic keratosis,MONDO,mapped,exact_label,,NCBITaxon:539655,human skin metagenome,mapped,exact_scientific_name
 2026-09-17,GSE294844,GSM8925221,human skin metagenome,human skin metagenome,unmapped,skin,skin,unchanged,actinic keratosis,actinic keratosis,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium v2 CytAssist Spatial Gene Expression,Visium v2 CytAssist Spatial Gene Expression,normalized,GPL35769,GPL35769,unchanged,,,missing,,,missing,,,missing,2289,18085,csr_matrix,int32,obsm/spatial,True,False,[],True,True,3000,3000,uint8,DEFLATE,1,PASS,2026-09-06T02:28:28.511102+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8925221,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294844,releases/2026-09-17/samples/GSE294844/GSM8925221.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,29461140,a7ad0e1dd7d9307d1174007fc4d41b69305f2bf8d72379d06896887a163806ad,49178919,9,False,True,38a5e9ba2aa8b3072a636f50bfc8305b7299973ce0f9b46c7037ac8fac6a01fb,cbf119266bad8d42003e2d6e8ddfe38cbc5b481e97fff1f0dadff40cb3b369f9,,UBERON:0000014,zone of skin,UBERON,mapped,exact_synonym,,MONDO:0005173,actinic keratosis,MONDO,mapped,exact_label,,NCBITaxon:539655,human skin metagenome,mapped,exact_scientific_name
 2026-09-17,GSE301720,GSM9087754,Homo sapiens,Homo sapiens,unchanged,Oral Cavity,Oral Cavity,unmapped,head and neck cancer,head and neck cancer,unmapped,,,missing,,,missing,,,missing,Non-Responder,Non-Responder,unchanged,10x Genomics Visium,10x Visium,normalized,GPL34284,GPL34284,unchanged,H&E,H&E,unchanged,,,missing,41837744,41837744,unchanged,2608,17943,csr_matrix,int64,"obs/x,obs/y",True,False,[],True,True,2000,1923,uint8,LZW,1,PASS,2026-09-08T02:45:31.928851+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9087754,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE301720,releases/2026-09-17/samples/GSE301720/GSM9087754.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,28341034,db858df48fba78bb848b5ca87d92773fcf6ba306424f90139b3f5d9d679125d5,31020916,9,False,True,afde8d3112ff19faf45ec8b5392063940be5760b2d44903fd09bec44f8fba984,f65a88c5f20149396de2bb9aec395e1005aa898850b89f2c584fa444e760c801,,UBERON:0000167,oral cavity,UBERON,mapped,exact_label,,MONDO:0005627,head and neck cancer,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE301973,GSM9093278,Homo sapiens,Homo sapiens,unchanged,lung,Lung,normalized,EGFR-mutated NSCLC,EGFR-mutated NSCLC,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium HD,10x Visium HD,normalized,GPL34284,GPL34284,unchanged,H&E,H&E,unchanged,,,missing,41152910,41152910,unchanged,45661,18111,csr_matrix,float64,obsm/spatial,True,False,[],True,True,22143,28735,uint8,NONE,1,PASS,2026-09-06T02:52:56.338110+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9093278,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE301973,releases/2026-09-17/samples/GSE301973/GSM9093278.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,984069794,48520a26e35de33f6ce52dcd7bc79e2b5f225bc043ff59d6b18f5a228444fda5,1992865624,9,False,True,4c2f041551e62c4b5f8596c72e9349cca0dc9c6aa60979db412325475b8072e7,603b8c0a15c6ddff33d5f5b4a73de19c0969e9ac6b7ffd452189be05ab7d1ec3,,UBERON:0002048,lung,UBERON,mapped,exact_label,,,,,unmapped,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE301973,GSM9093279,Homo sapiens,Homo sapiens,unchanged,lung,Lung,normalized,EGFR-mutated NSCLC,EGFR-mutated NSCLC,unmapped,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium HD,10x Visium HD,normalized,GPL34284,GPL34284,unchanged,H&E,H&E,unchanged,,,missing,41152910,41152910,unchanged,165630,18111,csr_matrix,float64,obsm/spatial,True,False,[],True,True,23491,23683,uint8,NONE,1,PASS,2026-09-06T01:25:27.617022+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9093279,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE301973,releases/2026-09-17/samples/GSE301973/GSM9093279.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,1455093986,0ac69ccdd99d5fc69d028cb146187281bc94bff720e26382f7aa62a01d70fbe5,1766552390,9,False,True,d3b0b4cb25bdfab6b3cc3a84b6124844ae01ac12260c3eba699aa3e389b4d9cb,8376f5107f9cf0366e184a89e482d4334632efb3e5fb8fd9caaffabcaf5333e4,,UBERON:0002048,lung,UBERON,mapped,exact_label,,,,,unmapped,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE302569,GSM9106293,Homo sapiens,Homo sapiens,unchanged,ileum,ileum,unmapped,Crohn's disease,Crohn's disease,unmapped,,,missing,,,missing,,,missing,strictured fibrotic ileum,strictured fibrotic ileum,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,,,missing,,,missing,41344440,41344440,unchanged,520101,18085,csr_matrix,int64,obsm/spatial,True,False,[],True,True,4792,6000,uint8,NONE,1,PASS,2026-09-06T01:25:27.617022+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9106293,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE302569,releases/2026-09-17/samples/GSE302569/GSM9106293.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,282767889,336570c7cd549021bf54e25656f9adc083befa2966abe6816ad4788fcc4315f9,314941481,9,False,True,7fe1ad186bfdba50ab90ede62b2e1aa54c01cd421466192ed84de981369ee1c5,11611a8d55cd34fc9184ca69beff1e8008228a5f322cc62878a0701e3f466a04,,UBERON:0002116,ileum,UBERON,mapped,exact_label,,MONDO:0005011,Crohn disease,MONDO,mapped,exact_synonym,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE302569,GSM9106294,Homo sapiens,Homo sapiens,unchanged,ileum,ileum,unmapped,Crohn's disease,Crohn's disease,unmapped,,,missing,,,missing,,,missing,non-strictured non-fibrotic ileum,non-strictured non-fibrotic ileum,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,,,missing,,,missing,41344440,41344440,unchanged,468841,18085,csr_matrix,int64,obsm/spatial,True,False,[],True,True,5148,6000,uint8,NONE,1,PASS,2026-09-06T01:25:27.617022+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9106294,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE302569,releases/2026-09-17/samples/GSE302569/GSM9106294.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,249254588,53e6c7c11fc37cb0b032ec89c8db1416bf076c95d1bb445501e133415ff81930,292607017,9,False,True,1041973e897a5b0785d76984c73e922b84755a22d958d38d4b0fe4c25327fd78,91929e09077d65d8d7eee7f375f0bfc87012f90d70121af1df42baf9167d2e2c,,UBERON:0002116,ileum,UBERON,mapped,exact_label,,MONDO:0005011,Crohn disease,MONDO,mapped,exact_synonym,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE302815,GSM9111711,Mus musculus,Mus musculus,unchanged,liver,liver,unchanged,,,missing,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL24247,GPL24247,unchanged,H&E,H&E,unchanged,,,missing,41706888,41706888,unchanged,2082,32285,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,1855,uint8,NONE,1,PASS,2026-09-06T01:25:27.617022+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9111711,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE302815,releases/2026-09-17/samples/GSE302815/GSM9111711.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,20078845,fcd3f711a80847d9fc434a2692cfe8d64e28a63dee90d17edbba34e14652ec7b,87811551,9,False,True,ca7425b4074c8b60410f22b6ad154be4544a91958a1fcbd5b14cef2614793908,f214fe731bb8e51235ce9c676ff721870788abf8eab81424b68e0900059fdca5,,UBERON:0002107,liver,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 2026-09-17,GSE310610,GSM9304482,Homo sapiens,Homo sapiens,unchanged,lung,lung,unchanged,,,missing,,,missing,18 weeks,18 weeks,unchanged,,,missing,No Lung Disease,No Lung Disease,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,H&E,H&E,unchanged,,,missing,41484334,41484334,unchanged,3251,17943,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,2000,uint8,LZW,1,PASS,2026-09-08T02:47:12.416572+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9304482,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE310610,releases/2026-09-17/samples/GSE310610/GSM9304482.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,26733023,a14f68d6189298d62118c3d334a604eb7ea2052762e69644d9804f7e7b8b40f1,28908835,9,False,True,7695c3dd7897e55d8942e3866a41375892f3b1816247247eae487e58018a5bdc,83ededcca50363c2d51ae2ce6e20ad6a8e2d163ba8d13ec57f79d9f161f094c3,,UBERON:0002048,lung,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE310610,GSM9304483,Homo sapiens,Homo sapiens,unchanged,lung,lung,unchanged,Trisomy 21,Trisomy 21,unmapped,,,missing,19 weeks,19 weeks,unchanged,,,missing,Trisomy 21,Trisomy 21,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,H&E,H&E,unchanged,,,missing,41484334,41484334,unchanged,4558,17943,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,2000,uint8,LZW,1,PASS,2026-09-08T02:47:12.416572+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9304483,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE310610,releases/2026-09-17/samples/GSE310610/GSM9304483.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,80374663,771801a8324609ddb2538cfde49eb6afaf2ce3c23e9da3d7eae295b8d29c8cbc,93666532,9,False,True,8dac056b71e73cc59bcf03e785e5e92be0e373b5f6fc9eaca1fc96d03e640277,d216999cefe98496f529b14c9b159bec857448e3667ce1b663aee3c694fce8b7,,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0700126,trisomy 21,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE310610,GSM9304484,Homo sapiens,Homo sapiens,unchanged,lung,lung,unchanged,,,missing,,,missing,20 weeks,20 weeks,unchanged,,,missing,No Lung Disease,No Lung Disease,unchanged,10x Genomics Visium,10x Visium,normalized,GPL24676,GPL24676,unchanged,H&E,H&E,unchanged,,,missing,41484334,41484334,unchanged,4399,17943,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,2000,uint8,LZW,1,PASS,2026-09-08T02:47:12.416572+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9304484,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE310610,releases/2026-09-17/samples/GSE310610/GSM9304484.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,55872516,f29ad2cf2dff8102f378c06d4f9dc05d91fbe30144a1fca6716b1df416a24dc7,59225683,9,False,True,404413ba4479ba44edbf8a88143e07cc8583b16e791b48304029e07a38935134,2ec3764a8ef30a05505b804fb4c282186d00d988eea210de9d3947fc0699f403,,UBERON:0002048,lung,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE311294,GSM9322957,Homo sapiens,Homo sapiens,unchanged,primary colorectal cancer,primary colorectal cancer,unmapped,colorectal cancer,colorectal cancer,unchanged,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL34281,GPL34281,unchanged,,,missing,,,missing,,,missing,3742,18085,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,2000,uint8,LZW,1,PASS,2026-09-06T02:52:56.338110+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9322957,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE311294,releases/2026-09-17/samples/GSE311294/GSM9322957.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,36353249,cc45ac81e69d42b9c6ecb3f1a1fbf104925253891b8848873d2163130ed2160e,38022249,9,False,True,3ed48c349832558c02cd2b73a3285dcbfc0fe3a3376caf63ee21d4790992e2d6,a0b97591f12e7b603cef18278ef0f6f063bd8b08faad07cfc75b8be488375793,,,,,unmapped,,,MONDO:0005575,colorectal cancer,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE311294,GSM9322958,Homo sapiens,Homo sapiens,unchanged,primary colorectal cancer,primary colorectal cancer,unmapped,colorectal cancer,colorectal cancer,unchanged,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL34281,GPL34281,unchanged,,,missing,,,missing,,,missing,4732,18085,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,2000,uint8,LZW,1,PASS,2026-09-06T02:52:56.338110+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9322958,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE311294,releases/2026-09-17/samples/GSE311294/GSM9322958.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,46553352,433483d1b49b4dbfc4ff61e785c7241a990863632220839c68a1933abbb8fc7b,48238581,9,False,True,c938a3063347eaf5146fccd089a434077d41736417e6e83b8cbb76419e8ebd45,f9d50ae7ae7fffd55d411ae39bfdd5e3a9422aba2ac178d445f4f0a80a9baeed,,,,,unmapped,,,MONDO:0005575,colorectal cancer,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 2026-09-17,GSE311294,GSM9322959,Homo sapiens,Homo sapiens,unchanged,primary colorectal cancer,primary colorectal cancer,unmapped,colorectal cancer,colorectal cancer,unchanged,,,missing,,,missing,,,missing,,,missing,10x Genomics Visium,10x Visium,normalized,GPL34281,GPL34281,unchanged,,,missing,,,missing,,,missing,3673,18085,csr_matrix,int64,obsm/spatial,True,False,[],True,True,2000,1299,uint8,LZW,1,PASS,2026-09-06T02:52:56.338110+00:00,full-review-revision-110,False,False,A,PASS,NOT_CERTIFIED_BY_HUMAN_REVIEW,False,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9322959,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE311294,releases/2026-09-17/samples/GSE311294/GSM9322959.tar.zst,spatial.h5ad,wsi.tif,source-defined; consult metadata/provenance before normalization,source-specific; consult original deposit/publication,1.0.0,17357204,a5625114b0252660a17fae701ec5427c2e7f7149601903a16d8ae78417618f59,18624189,9,False,True,2beb33f2d03121671a4f54f8f52bb8d763e917e0b330d9536ab38afb9a0a56af,5a5247a7af37b0c24cb662a5ad82ca39105629460447dc95ac1c2c253a70604d,,,,,unmapped,,,MONDO:0005575,colorectal cancer,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name

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releases/2026-09-17/ontology_mapping.csv CHANGED Viewed

@@ -1217,10 +1217,6 @@ GSM7146857,UBERON:0002217,synovial joint,UBERON,mapped,exact_label,,MONDO:001184
 GSM7146858,UBERON:0002217,synovial joint,UBERON,mapped,exact_label,,MONDO:0011849,psoriatic arthritis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM7146859,UBERON:0002217,synovial joint,UBERON,mapped,exact_label,,,,,control_or_non_disease,curated_non_disease_state,control label,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM7146860,UBERON:0002217,synovial joint,UBERON,mapped,exact_label,,,,,control_or_non_disease,curated_non_disease_state,control label,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
-GSM7156292,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:7719,Ciona intestinalis,mapped,exact_scientific_name
-GSM7156293,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:7719,Ciona intestinalis,mapped,exact_scientific_name
-GSM7156294,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:7719,Ciona intestinalis,mapped,exact_scientific_name
-GSM7156295,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:7719,Ciona intestinalis,mapped,exact_scientific_name
 GSM7164655,UBERON:0001890,forebrain,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 GSM7169587,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:2609070,Electrophorus voltai,mapped,exact_scientific_name
 GSM7169588,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:2609070,Electrophorus voltai,mapped,exact_scientific_name
@@ -3354,7 +3350,6 @@ GSM8770956,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0019338,sarcoido
 GSM8770957,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0019338,sarcoidosis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM8770958,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0019338,sarcoidosis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM8770959,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0019338,sarcoidosis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
-GSM8770960,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0019338,sarcoidosis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM8770961,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0019338,sarcoidosis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM8770962,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0019338,sarcoidosis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM8774701,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0005233,non-small cell lung carcinoma,MONDO,mapped,exact_synonym,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
@@ -3468,7 +3463,6 @@ GSM8915497,UBERON:0001264,pancreas,UBERON,mapped,exact_label,,MONDO:0005184,panc
 GSM8915498,UBERON:0001264,pancreas,UBERON,mapped,exact_label,,MONDO:0005003,chronic pancreatitis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM8915499,UBERON:0001264,pancreas,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM8915500,UBERON:0001264,pancreas,UBERON,mapped,exact_label,,MONDO:0005184,pancreatic ductal adenocarcinoma,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
-GSM8925216,UBERON:0000014,zone of skin,UBERON,mapped,exact_synonym,,MONDO:0005173,actinic keratosis,MONDO,mapped,exact_label,,NCBITaxon:539655,human skin metagenome,mapped,exact_scientific_name
 GSM8925218,UBERON:0000014,zone of skin,UBERON,mapped,exact_synonym,,MONDO:0005173,actinic keratosis,MONDO,mapped,exact_label,,NCBITaxon:539655,human skin metagenome,mapped,exact_scientific_name
 GSM8925219,UBERON:0000014,zone of skin,UBERON,mapped,exact_synonym,,MONDO:0005173,actinic keratosis,MONDO,mapped,exact_label,,NCBITaxon:539655,human skin metagenome,mapped,exact_scientific_name
 GSM8925221,UBERON:0000014,zone of skin,UBERON,mapped,exact_synonym,,MONDO:0005173,actinic keratosis,MONDO,mapped,exact_label,,NCBITaxon:539655,human skin metagenome,mapped,exact_scientific_name
@@ -3776,8 +3770,6 @@ GSM9087753,UBERON:0001729,oropharynx,UBERON,mapped,exact_label,,MONDO:0005627,he
 GSM9087754,UBERON:0000167,oral cavity,UBERON,mapped,exact_label,,MONDO:0005627,head and neck cancer,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM9093278,UBERON:0002048,lung,UBERON,mapped,exact_label,,,,,unmapped,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM9093279,UBERON:0002048,lung,UBERON,mapped,exact_label,,,,,unmapped,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
-GSM9097318,,,,unmapped,,,,,,unmapped,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
-GSM9097320,,,,unmapped,,,,,,unmapped,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM9106293,UBERON:0002116,ileum,UBERON,mapped,exact_label,,MONDO:0005011,Crohn disease,MONDO,mapped,exact_synonym,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM9106294,UBERON:0002116,ileum,UBERON,mapped,exact_label,,MONDO:0005011,Crohn disease,MONDO,mapped,exact_synonym,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM9111711,UBERON:0002107,liver,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
@@ -4012,7 +4004,6 @@ GSM9304481,UBERON:0002048,lung,UBERON,mapped,exact_label,,,,,missing_source_valu
 GSM9304482,UBERON:0002048,lung,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM9304483,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0700126,trisomy 21,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM9304484,UBERON:0002048,lung,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
-GSM9317397,,,,unmapped,,,MONDO:0005674,bone giant cell tumor,MONDO,mapped,exact_synonym,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM9322957,,,,unmapped,,,MONDO:0005575,colorectal cancer,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM9322958,,,,unmapped,,,MONDO:0005575,colorectal cancer,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM9322959,,,,unmapped,,,MONDO:0005575,colorectal cancer,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name

 GSM7146858,UBERON:0002217,synovial joint,UBERON,mapped,exact_label,,MONDO:0011849,psoriatic arthritis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM7146859,UBERON:0002217,synovial joint,UBERON,mapped,exact_label,,,,,control_or_non_disease,curated_non_disease_state,control label,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM7146860,UBERON:0002217,synovial joint,UBERON,mapped,exact_label,,,,,control_or_non_disease,curated_non_disease_state,control label,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM7164655,UBERON:0001890,forebrain,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 GSM7169587,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:2609070,Electrophorus voltai,mapped,exact_scientific_name
 GSM7169588,,,,unmapped,,,,,,missing_source_value,,,NCBITaxon:2609070,Electrophorus voltai,mapped,exact_scientific_name
 GSM8770957,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0019338,sarcoidosis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM8770958,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0019338,sarcoidosis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM8770959,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0019338,sarcoidosis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM8770961,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0019338,sarcoidosis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM8770962,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0019338,sarcoidosis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM8774701,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0005233,non-small cell lung carcinoma,MONDO,mapped,exact_synonym,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM8915498,UBERON:0001264,pancreas,UBERON,mapped,exact_label,,MONDO:0005003,chronic pancreatitis,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM8915499,UBERON:0001264,pancreas,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM8915500,UBERON:0001264,pancreas,UBERON,mapped,exact_label,,MONDO:0005184,pancreatic ductal adenocarcinoma,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM8925218,UBERON:0000014,zone of skin,UBERON,mapped,exact_synonym,,MONDO:0005173,actinic keratosis,MONDO,mapped,exact_label,,NCBITaxon:539655,human skin metagenome,mapped,exact_scientific_name
 GSM8925219,UBERON:0000014,zone of skin,UBERON,mapped,exact_synonym,,MONDO:0005173,actinic keratosis,MONDO,mapped,exact_label,,NCBITaxon:539655,human skin metagenome,mapped,exact_scientific_name
 GSM8925221,UBERON:0000014,zone of skin,UBERON,mapped,exact_synonym,,MONDO:0005173,actinic keratosis,MONDO,mapped,exact_label,,NCBITaxon:539655,human skin metagenome,mapped,exact_scientific_name
 GSM9087754,UBERON:0000167,oral cavity,UBERON,mapped,exact_label,,MONDO:0005627,head and neck cancer,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM9093278,UBERON:0002048,lung,UBERON,mapped,exact_label,,,,,unmapped,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM9093279,UBERON:0002048,lung,UBERON,mapped,exact_label,,,,,unmapped,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM9106293,UBERON:0002116,ileum,UBERON,mapped,exact_label,,MONDO:0005011,Crohn disease,MONDO,mapped,exact_synonym,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM9106294,UBERON:0002116,ileum,UBERON,mapped,exact_label,,MONDO:0005011,Crohn disease,MONDO,mapped,exact_synonym,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM9111711,UBERON:0002107,liver,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:10090,Mus musculus,mapped,exact_scientific_name
 GSM9304482,UBERON:0002048,lung,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM9304483,UBERON:0002048,lung,UBERON,mapped,exact_label,,MONDO:0700126,trisomy 21,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM9304484,UBERON:0002048,lung,UBERON,mapped,exact_label,,,,,missing_source_value,,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM9322957,,,,unmapped,,,MONDO:0005575,colorectal cancer,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM9322958,,,,unmapped,,,MONDO:0005575,colorectal cancer,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name
 GSM9322959,,,,unmapped,,,MONDO:0005575,colorectal cancer,MONDO,mapped,exact_label,,NCBITaxon:9606,Homo sapiens,mapped,exact_scientific_name

releases/2026-09-17/ontology_mapping.parquet CHANGED Viewed

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releases/2026-09-17/ontology_mapping_summary.json CHANGED Viewed

@@ -2,7 +2,7 @@
   "schema_version": "hesrt-ontology-mapping-v1",
   "input_catalog": "/cwStorage/home/jijh/projects/spatial-data-agent/standardized_data/releases/hesrt-hf-20260917-v1/public/releases/2026-09-17/catalog.parquet",
   "input_catalog_sha256": "8f654bd534261c1e22b2aedb37b4ca5a0d3f71ad04c9ad69737d0d63821a46ac",
-  "samples": 4691,
   "ontologies": {
     "UBERON": {
       "data_version": "releases/2026-06-19",
@@ -31,30 +31,30 @@
   },
   "coverage": {
     "tissue": {
-      "mapped": 3023,
-      "unmapped": 1668
     },
     "disease": {
-      "missing_source_value": 2288,
-      "mapped": 1896,
-      "unmapped": 398,
       "control_or_non_disease": 105,
       "ambiguous": 4
     },
     "organism": {
-      "mapped": 4688,
       "unmapped": 3
     }
   },
   "match_types": {
     "tissue": {
-      "exact_label": 2136,
-      "exact_synonym": 463,
       "curated_anatomy_phrase": 424
     },
     "disease": {
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-      "exact_synonym": 257,
       "source_validated_alias": 196,
       "curated_non_disease_state": 105,
       "punctuation_normalized_exact": 62,
@@ -63,7 +63,7 @@
       "ambiguous_exact": 4
     },
     "organism": {
-      "exact_scientific_name": 4683,
       "multi_taxon_exact": 5
     }
   },
@@ -73,6 +73,6 @@
     "original_columns_bytewise_dataframe_equal": true,
     "original_values_overwritten": false
   },
-  "release_tag": "2026-09-17-v1.5",
-  "input_catalog_note": "input_catalog and input_catalog_sha256 describe the 4,468-row catalog mapped on 2026-09-18; the 229 rows added in 2026-09-17-v1.4 were mapped with the same frozen ontology files and the same rules; 2026-09-17-v1.5 removed 6 rows and left the ontology columns of every remaining row unchanged"
 }

   "schema_version": "hesrt-ontology-mapping-v1",
   "input_catalog": "/cwStorage/home/jijh/projects/spatial-data-agent/standardized_data/releases/hesrt-hf-20260917-v1/public/releases/2026-09-17/catalog.parquet",
   "input_catalog_sha256": "8f654bd534261c1e22b2aedb37b4ca5a0d3f71ad04c9ad69737d0d63821a46ac",
+  "samples": 4682,
   "ontologies": {
     "UBERON": {
       "data_version": "releases/2026-06-19",
   },
   "coverage": {
     "tissue": {
+      "mapped": 3021,
+      "unmapped": 1661
     },
     "disease": {
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+      "mapped": 1893,
+      "unmapped": 396,
       "control_or_non_disease": 105,
       "ambiguous": 4
     },
     "organism": {
+      "mapped": 4679,
       "unmapped": 3
     }
   },
   "match_types": {
     "tissue": {
+      "exact_label": 2135,
+      "exact_synonym": 462,
       "curated_anatomy_phrase": 424
     },
     "disease": {
+      "exact_label": 1323,
+      "exact_synonym": 256,
       "source_validated_alias": 196,
       "curated_non_disease_state": 105,
       "punctuation_normalized_exact": 62,
       "ambiguous_exact": 4
     },
     "organism": {
+      "exact_scientific_name": 4674,
       "multi_taxon_exact": 5
     }
   },
     "original_columns_bytewise_dataframe_equal": true,
     "original_values_overwritten": false
   },
+  "release_tag": "2026-09-17-v1.6",
+  "input_catalog_note": "input_catalog and input_catalog_sha256 describe the 4,468-row catalog mapped on 2026-09-18; the 229 rows added in 2026-09-17-v1.4 were mapped with the same frozen ontology files and the same rules; 2026-09-17-v1.5 removed 6 rows and left the ontology columns of every remaining row unchanged; 2026-09-17-v1.6 removed 9 rows and left the ontology columns of every remaining row unchanged"
 }

releases/2026-09-17/ontology_mapping_validation.json CHANGED Viewed

@@ -1,12 +1,12 @@
 {
   "status": "VERIFIED",
-  "samples": 4691,
   "original_columns_preserved": 80,
   "new_columns": 16,
-  "tissue_mapped": 3023,
-  "disease_mapped": 1896,
   "disease_control_or_non_disease": 105,
-  "organism_mapped": 4688,
   "source_validated_aliases": {
     "MS": [
       "GSE174647",

 {
   "status": "VERIFIED",
+  "samples": 4682,
   "original_columns_preserved": 80,
   "new_columns": 16,
+  "tissue_mapped": 3021,
+  "disease_mapped": 1893,
   "disease_control_or_non_disease": 105,
+  "organism_mapped": 4679,
   "source_validated_aliases": {
     "MS": [
       "GSE174647",

releases/2026-09-17/ontology_unresolved_terms.csv CHANGED Viewed

@@ -98,8 +98,6 @@ disease,Hippocampal sclerosis,unmapped,1
 disease,Ischemia Reperfuion Injury,unmapped,1
 disease,Liver hepatocellular carcinoma,unmapped,1
 disease,"NEPC pT4N1M0 and ARPC pT2aN0M0, Gleason score of 4+4",unmapped,1
-disease,PSP (high seeder),unmapped,1
-disease,PSP (low seeder),unmapped,1
 disease,grade 3 serous fallopian tube carcinoma,unmapped,1
 disease,healthy control,unmapped,1
 disease,mitochondrial cardiomyopathy,unmapped,1
@@ -235,7 +233,6 @@ tissue,lung organoid,unmapped,4
 tissue,lung tissue,unmapped,4
 tissue,metastasis biopsies,unmapped,4
 tissue,mouse spinal cord,unmapped,4
-tissue,neural complex,unmapped,4
 tissue,proximal small intestine,unmapped,4
 tissue,skeletal muscle (quadriceps),unmapped,4
 tissue,skin wounds,unmapped,4
@@ -305,7 +302,6 @@ tissue,SC31 breast cancer PDX,unmapped,2
 tissue,Subcutaneous tumor,unmapped,2
 tissue,Submandibular and sublingual gland,unmapped,2
 tissue,Xenograft,unmapped,2
-tissue,brain:primary motor cortex,unmapped,2
 tissue,coronary sample with plaque erosion,unmapped,2
 tissue,endomyocardial biopsy tissue,unmapped,2
 tissue,liver tissue,unmapped,2
@@ -318,7 +314,6 @@ tissue,visceral adipose tissue,unmapped,2
 tissue,5 dpa regenerating lower arm,unmapped,1
 tissue,Angiomyolipoma associated with Tuberous Sclerosis Complex,unmapped,1
 tissue,Carotid plaque tissue,unmapped,1
-tissue,Distal femur,unmapped,1
 tissue,EBV+ Burkitt Lymphoma,unmapped,1
 tissue,EBV+ High Grade Plasma Cell Neoplasm,unmapped,1
 tissue,EBV+ Immunoblastic Lymphoma,unmapped,1

 disease,Ischemia Reperfuion Injury,unmapped,1
 disease,Liver hepatocellular carcinoma,unmapped,1
 disease,"NEPC pT4N1M0 and ARPC pT2aN0M0, Gleason score of 4+4",unmapped,1
 disease,grade 3 serous fallopian tube carcinoma,unmapped,1
 disease,healthy control,unmapped,1
 disease,mitochondrial cardiomyopathy,unmapped,1
 tissue,lung tissue,unmapped,4
 tissue,metastasis biopsies,unmapped,4
 tissue,mouse spinal cord,unmapped,4
 tissue,proximal small intestine,unmapped,4
 tissue,skeletal muscle (quadriceps),unmapped,4
 tissue,skin wounds,unmapped,4
 tissue,Subcutaneous tumor,unmapped,2
 tissue,Submandibular and sublingual gland,unmapped,2
 tissue,Xenograft,unmapped,2
 tissue,coronary sample with plaque erosion,unmapped,2
 tissue,endomyocardial biopsy tissue,unmapped,2
 tissue,liver tissue,unmapped,2
 tissue,5 dpa regenerating lower arm,unmapped,1
 tissue,Angiomyolipoma associated with Tuberous Sclerosis Complex,unmapped,1
 tissue,Carotid plaque tissue,unmapped,1
 tissue,EBV+ Burkitt Lymphoma,unmapped,1
 tissue,EBV+ High Grade Plasma Cell Neoplasm,unmapped,1
 tissue,EBV+ Immunoblastic Lymphoma,unmapped,1

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@@ -17269,11 +17244,6 @@
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@@ -18809,16 +18779,6 @@
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-  {
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-    "sha256": "931e400c6dceb6a0c2c3fc8ba014dd75bf72baefa3243b7b219c9cc5db4fa781"
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-    "sha256": "8805168e82cfde9347872adf61819aac08005aad1352a147fe8380b3c76584e6"
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@@ -20044,11 +20004,6 @@
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-  {
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-    "bytes": 75916073,
-    "sha256": "d0d0c083642d198e3c5cec93b3563c8d3c6d215f8b8c1953216d958749710260"
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releases/2026-09-17/release.json CHANGED Viewed

@@ -1,31 +1,31 @@
 {
   "version": "2026-09-17",
   "status": "PUBLISHED",
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-  "studies": 533,
-  "observations": 54925797,
-  "compressed_bytes": 422084128535,
-  "uncompressed_bytes": 657424301903,
   "all_source_binary_hashes_recomputed": true,
   "roundtrip_verified_packages": 243,
   "matrix_image_transformation": "none during packaging (byte-identical lossless packaging); 12 packages were converted again from the GEO deposit in 2026-09-17-v1.5",
   "published_at": "2026-09-18T02:57:13.346496+00:00",
   "repo_id": "Biogod/HESRT",
-  "payload_verified_commit": "f8eaa82c7222da379ba847d4632f115f13fe46bf",
-  "documentation_version": "2026-11-11-v1.5",
   "preview_samples": 8,
-  "payload_integrity_check": "All 4691 remote LFS SHA256 values and sizes match packages.json",
   "metadata_ontology_mapping": {
     "schema_version": "hesrt-ontology-mapping-v1",
     "catalog_columns": 96,
-    "tissue_mapped": 3023,
-    "disease_mapped": 1896,
     "disease_control_or_non_disease": 105,
-    "organism_mapped": 4688,
     "payload_modified": false
   },
-  "release_tag": "2026-09-17-v1.5",
-  "updated_at": "2026-11-11T10:58:33.124248+00:00",
   "additions": [
     {
       "tag": "2026-09-17-v1.4",
@@ -104,6 +104,56 @@
       "replaced_samples": 12,
       "withdrawn_samples": 6,
       "note": "Replaced packages were converted again from the GEO deposit, checked value by value against it and passed human visual review on 2026-11-11. Withdrawn packages remain reachable through the earlier tags and should not be used."
     }
   ]
 }

 {
   "version": "2026-09-17",
   "status": "PUBLISHED",
+  "samples": 4682,
+  "studies": 530,
+  "observations": 54902915,
+  "compressed_bytes": 421746281566,
+  "uncompressed_bytes": 656574825375,
   "all_source_binary_hashes_recomputed": true,
   "roundtrip_verified_packages": 243,
   "matrix_image_transformation": "none during packaging (byte-identical lossless packaging); 12 packages were converted again from the GEO deposit in 2026-09-17-v1.5",
   "published_at": "2026-09-18T02:57:13.346496+00:00",
   "repo_id": "Biogod/HESRT",
+  "payload_verified_commit": "3cbd36cce2b4203f389589e697baaa8bba672252",
+  "documentation_version": "2026-11-11-v1.6",
   "preview_samples": 8,
+  "payload_integrity_check": "All 4682 remote LFS SHA256 values and sizes match packages.json",
   "metadata_ontology_mapping": {
     "schema_version": "hesrt-ontology-mapping-v1",
     "catalog_columns": 96,
+    "tissue_mapped": 3021,
+    "disease_mapped": 1893,
     "disease_control_or_non_disease": 105,
+    "organism_mapped": 4679,
     "payload_modified": false
   },
+  "release_tag": "2026-09-17-v1.6",
+  "updated_at": "2026-11-11T12:22:12.061465+00:00",
   "additions": [
     {
       "tag": "2026-09-17-v1.4",
       "replaced_samples": 12,
       "withdrawn_samples": 6,
       "note": "Replaced packages were converted again from the GEO deposit, checked value by value against it and passed human visual review on 2026-11-11. Withdrawn packages remain reachable through the earlier tags and should not be used."
+    },
+    {
+      "tag": "2026-09-17-v1.6",
+      "date": "2026-11-11",
+      "check": "image registration of every package screened (share of spots inside the image and on tissue); 230 flagged samples viewed one by one, 23 of them judged by the author on a review page",
+      "replaced": [],
+      "withdrawn": [
+        {
+          "gse_id": "GSE229175",
+          "gsm_ids": [
+            "GSM7156292",
+            "GSM7156293",
+            "GSM7156294",
+            "GSM7156295"
+          ],
+          "reason": "the whole block of spots is shifted down and to the right of the tissue in the image"
+        },
+        {
+          "gse_id": "GSE302160",
+          "gsm_ids": [
+            "GSM9097318",
+            "GSM9097320"
+          ],
+          "reason": "the spot grid is shifted and extends onto bare glass"
+        },
+        {
+          "gse_id": "GSE294844",
+          "gsm_ids": [
+            "GSM8925216"
+          ],
+          "reason": "the tissue forms two horizontal strips in the image, but the spots form two vertical strips"
+        },
+        {
+          "gse_id": "GSE288607",
+          "gsm_ids": [
+            "GSM8770960"
+          ],
+          "reason": "only 31% of the spots fall inside the image; the spot grid is about three times larger than the image"
+        },
+        {
+          "gse_id": "GSE311123",
+          "gsm_ids": [
+            "GSM9317397"
+          ],
+          "reason": "the author judged the spots as not matching the tissue in the image on the review page"
+        }
+      ],
+      "replaced_samples": 0,
+      "withdrawn_samples": 9,
+      "note": "In the withdrawn packages the expression values and the coordinates are equal to the GEO deposit; only the match between spots and image is wrong. They remain reachable through the earlier tags and should not be used for analyses that pair image and expression."
     }
   ]
 }

releases/2026-09-17/studies.csv CHANGED Viewed

@@ -143,7 +143,6 @@ GSE228394,3,11443,Mus musculus,10x Genomics Visium,,38264685,https://www.ncbi.nl
 GSE228516,1,2116,Mus musculus,10x Genomics Visium,,,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE228516
 GSE228685,1,3584,Homo sapiens,10x Genomics Visium,,37370820,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE228685
 GSE228982,4,4583,Homo sapiens,10x Genomics Visium,,38396288,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE228982
-GSE229175,4,2010,Ciona intestinalis,10x Genomics Visium,,40970208,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE229175
 GSE229508,1,979,Mus musculus,10x Genomics Visium,,40210990,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE229508
 GSE229635,3,8317,Electrophorus voltai,10x Genomics Visium,,,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE229635
 GSE229699,5,6156,Mus musculus,10x Genomics Visium,,37052506,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE229699
@@ -389,7 +388,7 @@ GSE287278,8,10163,Homo sapiens,10x Genomics Visium,,41162434,https://www.ncbi.nl
 GSE287459,8,27437,Homo sapiens,10x Genomics Visium,,,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE287459
 GSE287979,1,2182,Homo sapiens,10x Genomics Visium,,39984438,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE287979
 GSE288483,8,15322,Homo sapiens,10x Genomics Visium,,41219363,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288483
-GSE288607,9,36114,Homo sapiens,10x Genomics Visium,,,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288607
 GSE288758,2,107163,Homo sapiens,10x Genomics Visium HD,,41152910,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288758
 GSE288888,2,4228,Homo sapiens,10x Genomics Visium,,,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288888
 GSE289170,6,17834,Mus musculus,10x Genomics Visium,,41058694,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE289170
@@ -410,7 +409,7 @@ GSE294120,2,3175,Mus musculus,10x Genomics Visium,,41644086,https://www.ncbi.nlm
 GSE294222,8,17581,Mus musculus,10x Genomics Visium,,40336950,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294222
 GSE294277,10,23245,Homo sapiens,10x Genomics Visium,,41524472,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294277
 GSE294669,13,32083,Homo sapiens,10x Genomics Visium,,40569674,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294669
-GSE294844,4,6351,human skin metagenome,10x Genomics Visium v2 CytAssist Spatial Gene Expression,,,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294844
 GSE294965,1,317414,Homo sapiens,10x Genomics Xenium In Situ,10.1101/2024.12.18.629206,40393992,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294965
 GSE295043,8,15439,Mus musculus,10x Genomics Visium,,40974890,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE295043
 GSE295060,2,5688,Mus musculus,10x Genomics Visium,,,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE295060
@@ -455,7 +454,6 @@ GSE301265,8,8295,Homo sapiens,10x Genomics Visium,10.1158/1078-0432.ccr-25-2854,
 GSE301486,1,80924,Homo sapiens,10x Genomics Visium HD,,40758889,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE301486
 GSE301720,8,19047,Homo sapiens,10x Genomics Visium,,41837744,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE301720
 GSE301973,2,211291,Homo sapiens,10x Genomics Visium HD,,41152910,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE301973
-GSE302160,2,9453,Homo sapiens,10x Genomics Visium,,41476155,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE302160
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 GSE302815,4,10854,Mus musculus,10x Genomics Visium,,41706888,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE302815
 GSE303705,4,1644264,Mus musculus,10x Genomics Visium HD,,,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE303705
@@ -476,7 +474,6 @@ GSE309408,8,7616,Anolis carolinensis; Columba livia; Gallus gallus; Taeniopygia
 GSE310073,6,13169,Rattus norvegicus,10x Genomics Visium,,41796221,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE310073
 GSE310351,6,5675,Homo sapiens,10x Genomics Visium,,41569144,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE310351
 GSE310610,12,43435,Homo sapiens,10x Genomics Visium,,41484334,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE310610
-GSE311123,1,4992,Homo sapiens,10x Genomics Visium,,41872383,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE311123
 GSE311294,5,21073,Homo sapiens,10x Genomics Visium,,,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE311294
 GSE311681,1,100627,Mus musculus,10x Genomics Xenium In Situ,,41963321,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE311681
 GSE311783,7,7873,Homo sapiens,10x Genomics Visium,,41707654,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE311783

 GSE228516,1,2116,Mus musculus,10x Genomics Visium,,,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE228516
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 GSE228982,4,4583,Homo sapiens,10x Genomics Visium,,38396288,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE228982
 GSE229508,1,979,Mus musculus,10x Genomics Visium,,40210990,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE229508
 GSE229635,3,8317,Electrophorus voltai,10x Genomics Visium,,,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE229635
 GSE229699,5,6156,Mus musculus,10x Genomics Visium,,37052506,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE229699
 GSE287459,8,27437,Homo sapiens,10x Genomics Visium,,,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE287459
 GSE287979,1,2182,Homo sapiens,10x Genomics Visium,,39984438,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE287979
 GSE288483,8,15322,Homo sapiens,10x Genomics Visium,,41219363,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288483
+GSE288607,8,31122,Homo sapiens,10x Genomics Visium,,,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288607
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 GSE288888,2,4228,Homo sapiens,10x Genomics Visium,,,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288888
 GSE289170,6,17834,Mus musculus,10x Genomics Visium,,41058694,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE289170
 GSE294222,8,17581,Mus musculus,10x Genomics Visium,,40336950,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294222
 GSE294277,10,23245,Homo sapiens,10x Genomics Visium,,41524472,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294277
 GSE294669,13,32083,Homo sapiens,10x Genomics Visium,,40569674,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294669
+GSE294844,3,4916,human skin metagenome,10x Genomics Visium v2 CytAssist Spatial Gene Expression,,,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294844
 GSE294965,1,317414,Homo sapiens,10x Genomics Xenium In Situ,10.1101/2024.12.18.629206,40393992,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294965
 GSE295043,8,15439,Mus musculus,10x Genomics Visium,,40974890,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE295043
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 GSE302569,2,988942,Homo sapiens,10x Genomics Visium,,41344440,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE302569
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 GSE310073,6,13169,Rattus norvegicus,10x Genomics Visium,,41796221,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE310073
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 GSE311294,5,21073,Homo sapiens,10x Genomics Visium,,,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE311294
 GSE311681,1,100627,Mus musculus,10x Genomics Xenium In Situ,,41963321,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE311681
 GSE311783,7,7873,Homo sapiens,10x Genomics Visium,,41707654,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE311783

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